Your job contains 1 sequence.
>psy15515
MSGAHPSEGSSNPSSPSSTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL
CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI
KKQGFTGTYDSLPTVTSPVPPVPTSNMYYHNGLPYTYHNGMAFFPSNGQSMVPTSPPTVP
TQVKILLPPGVLLCGICLIFLITLALAPTIKRPSLKPLNSSQCKIKQSRGRLLSRACSSS
SQ
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15515
(242 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1SI86 - symbol:BOLL "Uncharacterized protein" ... 333 3.8e-30 1
UNIPROTKB|C1JGV6 - symbol:BOLL "Uncharacterized protein" ... 328 1.3e-29 1
UNIPROTKB|G3MY63 - symbol:BOLL "Uncharacterized protein" ... 328 1.3e-29 1
UNIPROTKB|F1P6I8 - symbol:BOLL "Uncharacterized protein" ... 328 1.3e-29 1
UNIPROTKB|F2Z2G3 - symbol:BOLL "Protein boule-like" speci... 327 1.6e-29 1
UNIPROTKB|Q8N9W6 - symbol:BOLL "Protein boule-like" speci... 327 1.6e-29 1
MGI|MGI:1922638 - symbol:Boll "bol, boule-like (Drosophil... 325 2.7e-29 1
RGD|1559527 - symbol:Boll "bol, boule-like (Drosophila)" ... 325 2.7e-29 1
FB|FBgn0011206 - symbol:bol "boule" species:7227 "Drosoph... 314 3.9e-28 1
UNIPROTKB|F1NDD0 - symbol:F1NDD0 "Uncharacterized protein... 308 1.7e-27 1
UNIPROTKB|O57437 - symbol:dazl-a "Deleted in azoospermia-... 205 1.4e-16 1
UNIPROTKB|Q4V7Y4 - symbol:dazl-b "Deleted in azoospermia-... 204 1.8e-16 1
UNIPROTKB|A3DUJ0 - symbol:DAZL "Deleted in azoospermia-li... 200 4.7e-16 1
UNIPROTKB|J9NTC5 - symbol:DAZL "Uncharacterized protein" ... 200 4.7e-16 1
UNIPROTKB|I3LPX5 - symbol:LOC100625706 "Uncharacterized p... 199 6.0e-16 1
UNIPROTKB|Q76CY5 - symbol:dazl "Deleted in azoospermia-li... 198 7.7e-16 1
MGI|MGI:1342328 - symbol:Dazl "deleted in azoospermia-lik... 198 7.7e-16 1
RGD|1591714 - symbol:Dazl "deleted in azoospermia-like" s... 198 7.7e-16 1
UNIPROTKB|D4A0P8 - symbol:Dazl "Protein Dazl" species:101... 198 7.7e-16 1
UNIPROTKB|Q92904 - symbol:DAZL "Deleted in azoospermia-li... 197 9.8e-16 1
UNIPROTKB|E7EV40 - symbol:DAZL "Deleted in azoospermia-li... 196 1.3e-15 1
WB|WBGene00000935 - symbol:daz-1 species:6239 "Caenorhabd... 202 2.0e-15 1
UNIPROTKB|F1P368 - symbol:DAZL "Deleted in azoospermia-li... 191 4.2e-15 1
UNIPROTKB|Q804A9 - symbol:DAZL "Deleted in azoospermia-li... 191 4.2e-15 1
UNIPROTKB|F1PL96 - symbol:DAZL "Uncharacterized protein" ... 197 4.3e-15 1
UNIPROTKB|F6S8J2 - symbol:DAZ4 "Deleted in azoospermia pr... 194 4.3e-15 1
UNIPROTKB|E7EUF4 - symbol:DAZ3 "Deleted in azoospermia pr... 194 4.5e-15 1
UNIPROTKB|E7EN82 - symbol:DAZ2 "Deleted in azoospermia pr... 194 6.0e-15 1
UNIPROTKB|E7EU98 - symbol:DAZ3 "Deleted in azoospermia pr... 194 6.0e-15 1
UNIPROTKB|E7ETR3 - symbol:DAZ3 "Deleted in azoospermia pr... 194 6.3e-15 1
UNIPROTKB|E7EU30 - symbol:DAZ4 "Deleted in azoospermia pr... 194 6.3e-15 1
UNIPROTKB|E7EU39 - symbol:DAZ2 "Deleted in azoospermia pr... 194 6.3e-15 1
UNIPROTKB|E7ENA5 - symbol:DAZ4 "Deleted in azoospermia pr... 194 7.3e-15 1
UNIPROTKB|E7ERQ6 - symbol:DAZ3 "Deleted in azoospermia pr... 194 7.8e-15 1
UNIPROTKB|E7EU33 - symbol:DAZ4 "Deleted in azoospermia pr... 194 7.8e-15 1
UNIPROTKB|E7ENA6 - symbol:DAZ2 "Deleted in azoospermia pr... 194 1.1e-14 1
UNIPROTKB|I3L0B6 - symbol:DAZ2 "Deleted in azoospermia pr... 194 1.4e-14 1
UNIPROTKB|Q9NR90 - symbol:DAZ3 "Deleted in azoospermia pr... 194 1.4e-14 1
UNIPROTKB|Q13117 - symbol:DAZ2 "Deleted in azoospermia pr... 194 1.8e-14 1
UNIPROTKB|F8WD91 - symbol:BOLL "Protein boule-like" speci... 185 1.8e-14 1
UNIPROTKB|Q86SG3 - symbol:DAZ4 "Deleted in azoospermia pr... 194 1.9e-14 1
UNIPROTKB|F5H3W3 - symbol:DAZ2 "Deleted in azoospermia pr... 194 2.1e-14 1
UNIPROTKB|Q1RMF9 - symbol:DAZ1 "DAZ1 protein" species:960... 194 2.1e-14 1
UNIPROTKB|E9PBY2 - symbol:DAZ2 "Deleted in azoospermia pr... 194 2.4e-14 1
UNIPROTKB|Q9NQZ3 - symbol:DAZ1 "Deleted in azoospermia pr... 194 2.9e-14 1
ZFIN|ZDB-GENE-000405-6 - symbol:dazl "deleted in azoosper... 178 1.0e-13 1
UNIPROTKB|G4MYV6 - symbol:MGG_11418 "Nucleic acid-binding... 166 3.0e-12 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 154 8.5e-11 1
UNIPROTKB|E9PEG6 - symbol:DAZ1 "Deleted in azoospermia pr... 148 3.9e-10 1
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 148 7.2e-10 1
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin... 141 8.4e-10 1
DICTYBASE|DDB_G0275971 - symbol:DDB_G0275971 "RNA recogni... 150 1.4e-09 1
UNIPROTKB|F5GYA8 - symbol:DAZ2 "Deleted in azoospermia pr... 148 1.7e-09 1
WB|WBGene00007111 - symbol:B0035.12 species:6239 "Caenorh... 150 1.8e-09 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 136 2.9e-09 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 134 4.7e-09 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 133 5.9e-09 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 133 5.9e-09 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 145 9.9e-09 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 130 1.2e-08 1
UNIPROTKB|H0YHU8 - symbol:SART3 "Squamous cell carcinoma ... 128 2.0e-08 1
UNIPROTKB|F2Z2U1 - symbol:RBMY1A1 "RNA-binding motif prot... 127 2.6e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 126 3.3e-08 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 126 3.3e-08 1
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 131 3.5e-08 2
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 125 4.2e-08 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 141 4.6e-08 1
UNIPROTKB|F8VTQ5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 124 5.3e-08 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 136 5.7e-08 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 141 5.8e-08 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 123 7.2e-08 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 138 7.6e-08 1
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 143 8.0e-08 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 141 8.4e-08 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 141 8.4e-08 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 141 8.4e-08 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 141 8.5e-08 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 141 8.6e-08 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 141 8.6e-08 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 141 8.6e-08 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 141 8.6e-08 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 9.4e-08 1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 9.4e-08 1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 9.4e-08 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 9.4e-08 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 9.4e-08 1
UNIPROTKB|F8VYN5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 121 1.2e-07 1
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 138 1.3e-07 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 120 1.7e-07 1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 120 1.7e-07 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 122 1.9e-07 1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 140 2.1e-07 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 119 2.2e-07 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 119 2.2e-07 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 119 2.2e-07 1
UNIPROTKB|Q15415 - symbol:RBMY1F "RNA-binding motif prote... 136 2.3e-07 2
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 136 2.4e-07 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 138 2.5e-07 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 137 2.5e-07 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 138 2.6e-07 1
WARNING: Descriptions of 699 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1SI86 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:CU469305 Ensembl:ENSSSCT00000017510 Uniprot:F1SI86
Length = 295
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 66/138 (47%), Positives = 94/138 (68%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN +AP+YGTV+P R+FVGGI T E++L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 30 LNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 89
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDXXXXXXXXXXXXXXXNMY 148
+TF+++E+A+R+ ++++ + +K+K+LNI PAI+KQ G
Sbjct: 90 VTFETQEDAQRILQEAEKLNYKDKKLNIGPAIRKQQ-VGIPRSSIMPAAGTMYLTTST-- 146
Query: 149 YHNGLPYTYHNGMAFFPS 166
G PYTYHNG+A+F S
Sbjct: 147 ---GYPYTYHNGVAYFHS 161
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/136 (47%), Positives = 93/136 (68%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN +AP+YGTV+P R+FVGGI T E++L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 30 LNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 89
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDXXXXXXXXXXXXXXXNMY 148
+TF+++E+A+++ ++++ + +K+K+LNI PAI+KQ G
Sbjct: 90 VTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ-VGIPRSSIMPAAGTMYLTTST-- 146
Query: 149 YHNGLPYTYHNGMAFF 164
G PYTYHNG+A+F
Sbjct: 147 ---GYPYTYHNGVAYF 159
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/136 (47%), Positives = 93/136 (68%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN +AP+YGTV+P R+FVGGI T E++L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 30 LNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 89
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDXXXXXXXXXXXXXXXNMY 148
+TF+++E+A+++ ++++ + +K+K+LNI PAI+KQ G
Sbjct: 90 VTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ-VGIPRSSIMPAAGTMYLTTST-- 146
Query: 149 YHNGLPYTYHNGMAFF 164
G PYTYHNG+A+F
Sbjct: 147 ---GYPYTYHNGVAYF 159
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/136 (47%), Positives = 93/136 (68%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN +AP+YGTV+P R+FVGGI T E++L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 30 LNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 89
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDXXXXXXXXXXXXXXXNMY 148
+TF+++E+A+++ ++++ + +K+K+LNI PAI+KQ G
Sbjct: 90 VTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ-VGIPRSSIMPAAGTMYLTTST-- 146
Query: 149 YHNGLPYTYHNGMAFF 164
G PYTYHNG+A+F
Sbjct: 147 ---GYPYTYHNGVAYF 159
>UNIPROTKB|F2Z2G3 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011997
HGNC:HGNC:14273 IPI:IPI01018166 ProteinModelPortal:F2Z2G3
SMR:F2Z2G3 Ensembl:ENST00000430004 OMA:YQAPAQC ArrayExpress:F2Z2G3
Bgee:F2Z2G3 Uniprot:F2Z2G3
Length = 333
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 64/136 (47%), Positives = 92/136 (67%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN +AP+YGTV+P R+FVGGI T E +L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 18 LNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 77
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDXXXXXXXXXXXXXXXNMY 148
+TF+++E+A+++ ++++ + +K+K+LNI PAI+KQ G
Sbjct: 78 VTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ-VGIPRSSIMPAAGTMYLTTST-- 134
Query: 149 YHNGLPYTYHNGMAFF 164
G PYTYHNG+A+F
Sbjct: 135 ---GYPYTYHNGVAYF 147
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 64/136 (47%), Positives = 92/136 (67%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN +AP+YGTV+P R+FVGGI T E +L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 18 LNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 77
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDXXXXXXXXXXXXXXXNMY 148
+TF+++E+A+++ ++++ + +K+K+LNI PAI+KQ G
Sbjct: 78 VTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ-VGIPRSSIMPAAGTMYLTTST-- 134
Query: 149 YHNGLPYTYHNGMAFF 164
G PYTYHNG+A+F
Sbjct: 135 ---GYPYTYHNGVAYF 147
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 64/136 (47%), Positives = 92/136 (67%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN + P+YGTV+P R+FVGGI T E++L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 18 LNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 77
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDXXXXXXXXXXXXXXXNMY 148
ITF+++E+A+++ ++++ + +K+K+LNI PAI+KQ G
Sbjct: 78 ITFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ-VGIPRSSLMPAAGTMYLTTST-- 134
Query: 149 YHNGLPYTYHNGMAFF 164
G PYTYHNG+A+F
Sbjct: 135 ---GYPYTYHNGVAYF 147
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 64/136 (47%), Positives = 92/136 (67%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN + P+YGTV+P R+FVGGI T E++L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 30 LNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 89
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDXXXXXXXXXXXXXXXNMY 148
ITF+++E+A+++ ++++ + +K+K+LNI PAI+KQ G
Sbjct: 90 ITFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQ-VGIPRSSIMPAAGTMYLTTST-- 146
Query: 149 YHNGLPYTYHNGMAFF 164
G PYTYHNG+A+F
Sbjct: 147 ---GYPYTYHNGVAYF 159
>FB|FBgn0011206 [details] [associations]
symbol:bol "boule" species:7227 "Drosophila melanogaster"
[GO:0007140 "male meiosis" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP;TAS] [GO:0048137 "spermatocyte
division" evidence=IMP] [GO:0003729 "mRNA binding"
evidence=ISS;NAS;IMP] [GO:0008315 "meiotic G2/MI transition"
evidence=IMP;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IGI] [GO:0045836 "positive regulation of meiosis"
evidence=NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043204 "perikaryon" evidence=IDA] [GO:0007476 "imaginal
disc-derived wing morphogenesis" evidence=IMP] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:AE014296 GO:GO:0006417 GO:GO:0000166
GO:GO:0043204 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0046331
GO:GO:0007140 GO:GO:0007476 eggNOG:NOG260394
GeneTree:ENSGT00530000063480 EMBL:U51858 EMBL:AI063811
EMBL:AY089323 PIR:S68988 RefSeq:NP_523989.1 RefSeq:NP_729456.1
RefSeq:NP_729457.1 RefSeq:NP_729458.1 UniGene:Dm.20499
ProteinModelPortal:Q24207 SMR:Q24207 DIP:DIP-20744N IntAct:Q24207
MINT:MINT-911886 STRING:Q24207 PaxDb:Q24207 PRIDE:Q24207
EnsemblMetazoa:FBtr0076538 EnsemblMetazoa:FBtr0076540 GeneID:39049
KEGG:dme:Dmel_CG4760 UCSC:CG4760-RA CTD:39049 FlyBase:FBgn0011206
InParanoid:Q24207 OMA:NVPTIWP OrthoDB:EOG4S1RQF PhylomeDB:Q24207
ChiTaRS:bol GenomeRNAi:39049 NextBio:811653 Bgee:Q24207
GermOnline:CG4760 GO:GO:0008315 GO:GO:0048137 Uniprot:Q24207
Length = 228
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 55/89 (61%), Positives = 75/89 (84%)
Query: 35 APKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSE 94
APKYGT++P R+FVGGI+ TTE +L +FS YG VK KI+VDRAG+SKGYGF+TF++E
Sbjct: 24 APKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETE 83
Query: 95 EEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123
+EA+RLQ D + ++ ++++LNIAPAIKKQ
Sbjct: 84 QEAQRLQADGECVVLRDRKLNIAPAIKKQ 112
>UNIPROTKB|F1NDD0 [details] [associations]
symbol:F1NDD0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AADN02019816 EMBL:AADN02019817 IPI:IPI00575003
ProteinModelPortal:F1NDD0 Ensembl:ENSGALT00000013174 Uniprot:F1NDD0
Length = 307
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 61/136 (44%), Positives = 90/136 (66%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN AP++GTV P R+FVGGI T E++L + F+QYG V++VKIV DRAGISKGYGF
Sbjct: 24 LNNPTGAPRFGTVTPNRIFVGGIDFKTNENDLRKFFAQYGCVREVKIVNDRAGISKGYGF 83
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDXXXXXXXXXXXXXXXNMY 148
ITF+++E+A+++ +++ + +K+K+LNI PAI+KQ +
Sbjct: 84 ITFETQEDAQKILQEAKKLNYKDKKLNIGPAIRKQ------QTRMPRSNVIQEGGTMYLT 137
Query: 149 YHNGLPYTYHNGMAFF 164
+G PY YHNG+A+F
Sbjct: 138 TSSGYPYIYHNGVAYF 153
>UNIPROTKB|O57437 [details] [associations]
symbol:dazl-a "Deleted in azoospermia-like-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0008354 "germ cell migration" evidence=IMP] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0032019
"mitochondrial cloud" evidence=IDA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283
GO:GO:0003723 GO:GO:0008494 GO:GO:0007281 GO:GO:0045948
GO:GO:0045495 GO:GO:0008354 EMBL:AF017778 RefSeq:NP_001081772.1
UniGene:Xl.311 HSSP:Q15427 ProteinModelPortal:O57437 GeneID:398041
KEGG:xla:398041 CTD:1618 Xenbase:XB-GENE-6078612 HOVERGEN:HBG000573
GO:GO:0032019 Uniprot:O57437
Length = 286
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 45/106 (42%), Positives = 66/106 (62%)
Query: 19 TQNNAFFNYQAAVNNN--APKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIV 76
+ N A + AVN P+ G ++P VFVGGI T E E+ + F+++G VK+VKI+
Sbjct: 7 SSNYAATAEEEAVNQGFVLPE-GEIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKII 65
Query: 77 VDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122
DR G+SKGYGFI+F E + +++ K I F K+L + PAI+K
Sbjct: 66 TDRTGVSKGYGFISFSDEVDVQKIVKSQ--ISFHGKKLKLGPAIRK 109
>UNIPROTKB|Q4V7Y4 [details] [associations]
symbol:dazl-b "Deleted in azoospermia-like-B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0007281 "germ cell
development" evidence=ISS] [GO:0008354 "germ cell migration"
evidence=ISS] [GO:0008494 "translation activator activity"
evidence=ISS] [GO:0032019 "mitochondrial cloud" evidence=ISS]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0003723
GO:GO:0008494 GO:GO:0007281 GO:GO:0045948 GO:GO:0008354
UniGene:Xl.311 HSSP:Q15427 Xenbase:XB-GENE-6078612
HOVERGEN:HBG000573 GO:GO:0032019 EMBL:BC071023 EMBL:BC097658
ProteinModelPortal:Q4V7Y4 Uniprot:Q4V7Y4
Length = 286
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 45/106 (42%), Positives = 66/106 (62%)
Query: 19 TQNNAFFNYQAAVNNN--APKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIV 76
+ N A + AVN P+ G ++P VFVGGI T E E+ + F+++G VK+VKI+
Sbjct: 7 SSNYAATAEEEAVNQGFVLPE-GKIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKII 65
Query: 77 VDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122
DR G+SKGYGFI+F E + +++ K I F K+L + PAI+K
Sbjct: 66 TDRTGVSKGYGFISFSDEVDIQKIVKSQ--ISFHGKKLKLGPAIRK 109
>UNIPROTKB|A3DUJ0 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like transcript variant
1" species:9913 "Bos taurus" [GO:0045948 "positive regulation of
translational initiation" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:DAAA02003725 EMBL:DQ408764 EMBL:DQ408765
EMBL:EF501823 IPI:IPI00706010 RefSeq:NP_001075194.1
UniGene:Bt.63695 STRING:A3DUJ0 Ensembl:ENSBTAT00000048665
GeneID:530116 KEGG:bta:530116 InParanoid:A3DUJ0 NextBio:20875183
Uniprot:A3DUJ0
Length = 295
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 45/123 (36%), Positives = 70/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G ++P VFVGGI E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSATTSQGYV---LPE-GKIMPNTVFVGGIDVRMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F++YG VK+VKI+ DR G+SKGYGF++F ++ + +++ + N F K+L + PAI
Sbjct: 57 RSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQIN--FHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|J9NTC5 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 CTD:1618 OMA:YVIPPAY EMBL:AAEX03013583
RefSeq:XP_534251.3 Ensembl:ENSCAFT00000046462 GeneID:477055
KEGG:cfa:477055 Uniprot:J9NTC5
Length = 295
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 45/123 (36%), Positives = 70/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G ++P VFVGGI E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSATTSQGYV---LPE-GKIMPNTVFVGGIDVRMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F++YG VK+VKI+ DR G+SKGYGF++F ++ + +++ + N F K+L + PAI
Sbjct: 57 RSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQIN--FHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|I3LPX5 [details] [associations]
symbol:LOC100625706 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0045836 "positive regulation of
meiosis" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YVIPPAY
EMBL:FP312724 Ensembl:ENSSSCT00000022390 Uniprot:I3LPX5
Length = 298
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 44/123 (35%), Positives = 70/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G ++P +FVGGI E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAATSQGYV---LPE-GKIMPNTIFVGGIDVRMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F++YG VK+VKI+ DR G+SKGYGF++F ++ + +++ + N F K+L + PAI
Sbjct: 57 RSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQIN--FHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|Q76CY5 [details] [associations]
symbol:dazl "Deleted in azoospermia-like" species:8364
"Xenopus (Silurana) tropicalis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0007281
"germ cell development" evidence=ISS] [GO:0008354 "germ cell
migration" evidence=ISS] [GO:0008494 "translation activator
activity" evidence=ISS] [GO:0032019 "mitochondrial cloud"
evidence=ISS] [GO:0045495 "pole plasm" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
GO:GO:0007281 eggNOG:NOG260394 GO:GO:0045948
GeneTree:ENSGT00530000063480 GO:GO:0045495 HSSP:P09651
GO:GO:0008354 OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573
GO:GO:0032019 HOGENOM:HOG000246400 OMA:YVIPPAY EMBL:AB109328
EMBL:BC067947 RefSeq:NP_989079.1 UniGene:Str.6165
ProteinModelPortal:Q76CY5 STRING:Q76CY5 Ensembl:ENSXETT00000053944
GeneID:394676 KEGG:xtr:394676 Xenbase:XB-GENE-1006218
InParanoid:Q76CY5 Bgee:Q76CY5 Uniprot:Q76CY5
Length = 286
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 41/91 (45%), Positives = 56/91 (61%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G V+P VFVGGI T E + LF +YG VK +KI+ DR G+SKGYGF++F E + +
Sbjct: 25 GKVIPNTVFVGGIDITMDEMAIGNLFEKYGKVKDLKIITDRTGVSKGYGFVSFYDEVDVQ 84
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFTGTY 129
++ K N F K+L + PAI+K TY
Sbjct: 85 KIVKSQIN--FHGKKLKLGPAIRKMQRICTY 113
>MGI|MGI:1342328 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=ISO;IDA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0044464 "cell part" evidence=IDA] [GO:0045836 "positive
regulation of meiosis" evidence=IMP] [GO:0045948 "positive
regulation of translational initiation" evidence=ISO;IDA]
[GO:0048477 "oogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1342328 GO:GO:0007275 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:X95724 EMBL:U38690 EMBL:U46694 EMBL:AK014854
EMBL:AK033183 IPI:IPI00262067 RefSeq:NP_034151.3 UniGene:Mm.280641
PDB:2XS2 PDB:2XS5 PDB:2XS7 PDB:2XSF PDBsum:2XS2 PDBsum:2XS5
PDBsum:2XS7 PDBsum:2XSF ProteinModelPortal:Q64368 SMR:Q64368
IntAct:Q64368 MINT:MINT-133503 STRING:Q64368 PhosphoSite:Q64368
PaxDb:Q64368 PRIDE:Q64368 Ensembl:ENSMUST00000010736 GeneID:13164
KEGG:mmu:13164 UCSC:uc008cyv.2 InParanoid:Q64368
EvolutionaryTrace:Q64368 NextBio:283242 Bgee:Q64368 CleanEx:MM_DAZL
Genevestigator:Q64368 GermOnline:ENSMUSG00000010592 Uniprot:Q64368
Length = 298
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 39/91 (42%), Positives = 59/91 (64%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F++YG VK+VKI+ DR G+SKGYGF++F ++ + +
Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFTGTY 129
++ + N F K+L + PAI+KQ TY
Sbjct: 95 KIVESQIN--FHGKKLKLGPAIRKQNLC-TY 122
>RGD|1591714 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=IEA;ISO] [GO:0044464 "cell part" evidence=ISO] [GO:0045836
"positive regulation of meiosis" evidence=IEA;ISO] [GO:0045948
"positive regulation of translational initiation" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008494 GO:GO:0003730 GO:GO:0007281
GO:GO:0005844 GO:GO:0045836 GO:GO:0045948 OrthoDB:EOG4T783S
EMBL:CH473987 UniGene:Rn.136288 IPI:IPI00765442
Ensembl:ENSRNOT00000039512 UCSC:RGD:1591714 Uniprot:D4A3C6
Length = 298
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 39/91 (42%), Positives = 59/91 (64%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F++YG VK+VKI+ DR G+SKGYGF++F ++ + +
Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFTGTY 129
++ + N F K+L + PAI+KQ TY
Sbjct: 95 KIVESQIN--FHGKKLKLGPAIRKQNLC-TY 122
>UNIPROTKB|D4A0P8 [details] [associations]
symbol:Dazl "Protein Dazl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063480 CTD:1618 EMBL:CH473987
IPI:IPI00870381 RefSeq:NP_001102884.1 UniGene:Rn.136288
Ensembl:ENSRNOT00000066517 GeneID:680486 KEGG:rno:680486
NextBio:718813 Uniprot:D4A0P8
Length = 281
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 39/91 (42%), Positives = 59/91 (64%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F++YG VK+VKI+ DR G+SKGYGF++F ++ + +
Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFTGTY 129
++ + N F K+L + PAI+KQ TY
Sbjct: 95 KIVESQIN--FHGKKLKLGPAIRKQNLC-TY 122
>UNIPROTKB|Q92904 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0007281 "germ cell development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 EMBL:CH471055 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0003730
GO:GO:0007281 GO:GO:0005844 GO:GO:0045836 eggNOG:NOG260394
GO:GO:0045948 OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573
HOGENOM:HOG000246400 EMBL:U65918 EMBL:U66726 EMBL:U66078
EMBL:U77476 EMBL:U77467 EMBL:U77468 EMBL:U77469 EMBL:U77470
EMBL:U77471 EMBL:U77472 EMBL:U77473 EMBL:U77474 EMBL:U77475
EMBL:AK303026 EMBL:BX648638 EMBL:AC010139 EMBL:BC027595
IPI:IPI00871660 RefSeq:NP_001177740.1 RefSeq:NP_001342.2
UniGene:Hs.131179 ProteinModelPortal:Q92904 SMR:Q92904
IntAct:Q92904 STRING:Q92904 PhosphoSite:Q92904 DMDM:27805453
PRIDE:Q92904 DNASU:1618 Ensembl:ENST00000250863
Ensembl:ENST00000399444 GeneID:1618 KEGG:hsa:1618 UCSC:uc003cbb.3
GeneCards:GC03M016603 HGNC:HGNC:2685 HPA:HPA019593 HPA:HPA019777
MIM:601486 neXtProt:NX_Q92904 PharmGKB:PA27155 OMA:YVIPPAY
GenomeRNAi:1618 NextBio:6646 ArrayExpress:Q92904 Bgee:Q92904
CleanEx:HS_DAZL Genevestigator:Q92904 GermOnline:ENSG00000092345
Uniprot:Q92904
Length = 295
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 44/123 (35%), Positives = 70/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q + P+ G ++P VFVGGI E E+
Sbjct: 1 MSTANPETPNSTISREASTQSSSAATSQGYI---LPE-GKIMPNTVFVGGIDVRMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F++YG VK+VKI+ DR G+SKGYGF++F ++ + +++ + N F K+L + PAI
Sbjct: 57 RSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVESQIN--FHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7EV40 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010139
HGNC:HGNC:2685 IPI:IPI00927411 ProteinModelPortal:E7EV40 SMR:E7EV40
Ensembl:ENST00000454457 ArrayExpress:E7EV40 Bgee:E7EV40
Uniprot:E7EV40
Length = 204
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 37/85 (43%), Positives = 57/85 (67%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F++YG VK+VKI+ DR G+SKGYGF++F ++ + +
Sbjct: 73 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQ 132
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ + N F K+L + PAI+KQ
Sbjct: 133 KIVESQIN--FHGKKLKLGPAIRKQ 155
>WB|WBGene00000935 [details] [associations]
symbol:daz-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0006898 GO:GO:0005737 GO:GO:0030154
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0048477 GO:GO:0003723 eggNOG:NOG260394 EMBL:AB025253
EMBL:FO081078 RefSeq:NP_495036.3 ProteinModelPortal:Q20870
SMR:Q20870 STRING:Q20870 PaxDb:Q20870 GeneID:173931
KEGG:cel:CELE_F56D1.7 UCSC:F56D1.7 CTD:173931 WormBase:F56D1.7
InParanoid:Q20870 NextBio:881713 GermOnline:F56D1.7 Uniprot:Q20870
Length = 499
Score = 202 (76.2 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 35 APKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSE 94
AP ++P R+FVGG ++TTE EL E F ++ VK VK+V G SKGYGFITF++E
Sbjct: 58 APPTYELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETE 117
Query: 95 EEAKRLQK-DSDNIMFKEKRLNIAPAIKK 122
++A+ ++K + F+ ++LN+ PAI+K
Sbjct: 118 DQAEEIRKLTPKQLEFRSRKLNLGPAIRK 146
>UNIPROTKB|F1P368 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 GO:GO:0003730 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 IPI:IPI00575414
OMA:YVIPPAY EMBL:AADN02001034 Ensembl:ENSGALT00000018341
Uniprot:F1P368
Length = 289
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F QYG VK+VKI+ DR G+SKGYGF++F + +
Sbjct: 31 GKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQ 90
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ + I KRL + PAI+KQ
Sbjct: 91 KIVESQ--ISVHGKRLKLGPAIRKQ 113
>UNIPROTKB|Q804A9 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0007283 GO:GO:0003723 eggNOG:NOG260394
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 EMBL:AY211387
IPI:IPI00575414 RefSeq:NP_989549.1 UniGene:Gga.5133
ProteinModelPortal:Q804A9 STRING:Q804A9 GeneID:374054
KEGG:gga:374054 HOGENOM:HOG000246400 InParanoid:Q804A9
NextBio:20813576 Uniprot:Q804A9
Length = 289
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F QYG VK+VKI+ DR G+SKGYGF++F + +
Sbjct: 31 GKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQ 90
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ + I KRL + PAI+KQ
Sbjct: 91 KIVESQ--ISVHGKRLKLGPAIRKQ 113
>UNIPROTKB|F1PL96 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:AAEX03013583
Ensembl:ENSCAFT00000009460 Uniprot:F1PL96
Length = 413
Score = 197 (74.4 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 39/93 (41%), Positives = 59/93 (63%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F++YG VK+VKI+ DR G+SKGYGF++F ++ + +
Sbjct: 36 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQ 95
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFT--GTY 129
++ + N F K+L + PAI+KQ G Y
Sbjct: 96 KIVESQIN--FHGKKLKLGPAIRKQNLCEKGAY 126
>UNIPROTKB|F6S8J2 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
HGNC:HGNC:15966 ChiTaRS:DAZ4 EMBL:AC006982 EMBL:AC010089
IPI:IPI01018895 ProteinModelPortal:F6S8J2 SMR:F6S8J2
Ensembl:ENST00000382290 UCSC:uc022cok.1 ArrayExpress:F6S8J2
Bgee:F6S8J2 Uniprot:F6S8J2
Length = 334
Score = 194 (73.4 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7EUF4 [details] [associations]
symbol:DAZ3 "Deleted in azoospermia protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15965
EMBL:AC010089 IPI:IPI00749494 ProteinModelPortal:E7EUF4 SMR:E7EUF4
Ensembl:ENST00000306737 ArrayExpress:E7EUF4 Bgee:E7EUF4
Uniprot:E7EUF4
Length = 337
Score = 194 (73.4 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7EN82 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15964
EMBL:AC006983 EMBL:AC007039 EMBL:AC053490 IPI:IPI00874259
ProteinModelPortal:E7EN82 SMR:E7EN82 Ensembl:ENST00000382434
ArrayExpress:E7EN82 Bgee:E7EN82 Uniprot:E7EN82
Length = 361
Score = 194 (73.4 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7EU98 [details] [associations]
symbol:DAZ3 "Deleted in azoospermia protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15965
EMBL:AC010089 IPI:IPI00872285 ProteinModelPortal:E7EU98 SMR:E7EU98
Ensembl:ENST00000400212 ArrayExpress:E7EU98 Bgee:E7EU98
Uniprot:E7EU98
Length = 361
Score = 194 (73.4 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7ETR3 [details] [associations]
symbol:DAZ3 "Deleted in azoospermia protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15965
EMBL:AC010089 IPI:IPI00872074 ProteinModelPortal:E7ETR3 SMR:E7ETR3
Ensembl:ENST00000315357 ArrayExpress:E7ETR3 Bgee:E7ETR3
Uniprot:E7ETR3
Length = 366
Score = 194 (73.4 bits), Expect = 6.3e-15, P = 6.3e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7EU30 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
HGNC:HGNC:15966 ChiTaRS:DAZ4 EMBL:AC006982 EMBL:AC010089
IPI:IPI00930462 ProteinModelPortal:E7EU30 SMR:E7EU30 PRIDE:E7EU30
Ensembl:ENST00000382314 ArrayExpress:E7EU30 Bgee:E7EU30
Uniprot:E7EU30
Length = 366
Score = 194 (73.4 bits), Expect = 6.3e-15, P = 6.3e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7EU39 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
RefSeq:NP_001005786.2 UniGene:Hs.592257 GeneID:57055 KEGG:hsa:57055
CTD:57055 HGNC:HGNC:15964 GenomeRNAi:57055 NextBio:62832
HGNC:HGNC:15966 EMBL:AC006983 EMBL:AC007039 EMBL:AC053490
EMBL:AC006982 EMBL:AC010089 IPI:IPI00974525 SMR:E7EU39
Ensembl:ENST00000382294 Ensembl:ENST00000415508 UCSC:uc004fvo.3
Uniprot:E7EU39
Length = 366
Score = 194 (73.4 bits), Expect = 6.3e-15, P = 6.3e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7ENA5 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
HGNC:HGNC:15966 ChiTaRS:DAZ4 EMBL:AC006982 EMBL:AC010089
IPI:IPI00936003 SMR:E7ENA5 Ensembl:ENST00000382432
Ensembl:ENST00000400494 UCSC:uc022coz.1 Uniprot:E7ENA5
Length = 382
Score = 194 (73.4 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7ERQ6 [details] [associations]
symbol:DAZ3 "Deleted in azoospermia protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15965
EMBL:AC010089 IPI:IPI00942002 ProteinModelPortal:E7ERQ6 SMR:E7ERQ6
Ensembl:ENST00000446723 ArrayExpress:E7ERQ6 Bgee:E7ERQ6
Uniprot:E7ERQ6
Length = 390
Score = 194 (73.4 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7EU33 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
HGNC:HGNC:15966 ChiTaRS:DAZ4 EMBL:AC006982 EMBL:AC010089
IPI:IPI00639994 SMR:E7EU33 Ensembl:ENST00000382296
Ensembl:ENST00000382305 Uniprot:E7EU33
Length = 390
Score = 194 (73.4 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|E7ENA6 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15964
EMBL:AC006983 EMBL:AC007039 EMBL:AC053490 IPI:IPI00942959
ProteinModelPortal:E7ENA6 SMR:E7ENA6 Ensembl:ENST00000400493
ArrayExpress:E7ENA6 Bgee:E7ENA6 Uniprot:E7ENA6
Length = 438
Score = 194 (73.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|I3L0B6 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15964
EMBL:AC006983 EMBL:AC007039 EMBL:AC053490 ProteinModelPortal:I3L0B6
SMR:I3L0B6 Ensembl:ENST00000382431 Bgee:I3L0B6 Uniprot:I3L0B6
Length = 486
Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|Q9NR90 [details] [associations]
symbol:DAZ3 "Deleted in azoospermia protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 EMBL:AC006338 UniGene:Hs.70936
MIM:415000 Orphanet:1646 eggNOG:KOG0118 HOVERGEN:HBG048860
UniGene:Hs.592257 HOGENOM:HOG000112149 GermOnline:ENSG00000205944
EMBL:AF248481 EMBL:BC113005 IPI:IPI00006501 IPI:IPI00742060
RefSeq:NP_065097.2 ProteinModelPortal:Q9NR90 SMR:Q9NR90
STRING:Q9NR90 PhosphoSite:Q9NR90 DMDM:44887842 PRIDE:Q9NR90
Ensembl:ENST00000382365 GeneID:57054 KEGG:hsa:57054 UCSC:uc004fvs.3
UCSC:uc004fvw.3 CTD:57054 GeneCards:GC0YM026909 H-InvDB:HIX0093747
HGNC:HGNC:15965 MIM:400027 neXtProt:NX_Q9NR90 PharmGKB:PA27151
OrthoDB:EOG4T783S GenomeRNAi:57054 NextBio:62828
ArrayExpress:Q9NR90 Bgee:Q9NR90 Genevestigator:Q9NR90
Uniprot:Q9NR90
Length = 486
Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|Q13117 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007338 "single fertilization" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0007338 EMBL:AC006338 MIM:415000 Orphanet:1646
eggNOG:KOG0118 HOVERGEN:HBG048860 EMBL:U21663 EMBL:AF248480
EMBL:AF414184 EMBL:BC113006 IPI:IPI00006498 IPI:IPI00382559
IPI:IPI00401964 PIR:I38963 RefSeq:NP_001005785.1
RefSeq:NP_001005786.2 RefSeq:NP_065096.2 UniGene:Hs.592257
ProteinModelPortal:Q13117 SMR:Q13117 STRING:Q13117
PhosphoSite:Q13117 DMDM:218512098 PRIDE:Q13117
Ensembl:ENST00000382306 Ensembl:ENST00000382433
Ensembl:ENST00000382449 GeneID:57055 KEGG:hsa:57055 UCSC:uc004fvq.3
UCSC:uc022col.1 CTD:57055 GeneCards:GC0YP025365 H-InvDB:HIX0056667
HGNC:HGNC:15964 MIM:400026 neXtProt:NX_Q13117 PharmGKB:PA27150
HOGENOM:HOG000112149 OrthoDB:EOG43N7FJ GenomeRNAi:57055
NextBio:62832 ArrayExpress:Q13117 Bgee:Q13117 CleanEx:HS_DAZ2
Genevestigator:Q13117 GermOnline:ENSG00000205944 Uniprot:Q13117
Length = 558
Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|F8WD91 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011997 HGNC:HGNC:14273
IPI:IPI00917092 ProteinModelPortal:F8WD91 SMR:F8WD91
Ensembl:ENST00000434976 ArrayExpress:F8WD91 Bgee:F8WD91
Uniprot:F8WD91
Length = 87
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGY 86
+NN +AP+YGTV+P R+FVGGI T E +L + FSQYG VK+VKIV DRAG+SKG+
Sbjct: 30 LNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGF 87
>UNIPROTKB|Q86SG3 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 EMBL:AC006338 UniGene:Hs.522868
UniGene:Hs.70936 MIM:400003 MIM:415000 Orphanet:1646
HOVERGEN:HBG048860 GermOnline:ENSG00000188120 EMBL:AF248482
EMBL:AF248483 EMBL:BC047480 EMBL:BC047617 IPI:IPI00160336
IPI:IPI00401506 RefSeq:NP_001005375.1 RefSeq:NP_065153.1
ProteinModelPortal:Q86SG3 SMR:Q86SG3 STRING:Q86SG3
PhosphoSite:Q86SG3 DMDM:44887840 PRIDE:Q86SG3
Ensembl:ENST00000440066 Ensembl:ENST00000449750 GeneID:57135
KEGG:hsa:57135 UCSC:uc004fvm.3 UCSC:uc004fvn.3 CTD:57135
GeneCards:GC0YP026979 HGNC:HGNC:15966 neXtProt:NX_Q86SG3
PharmGKB:PA27152 InParanoid:Q86SG3 ChiTaRS:DAZ4 GenomeRNAi:57135
NextBio:63055 ArrayExpress:Q86SG3 Bgee:Q86SG3 CleanEx:HS_DAZ4
Genevestigator:Q86SG3 Uniprot:Q86SG3
Length = 579
Score = 194 (73.4 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
Score = 193 (73.0 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 200 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 259
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 260 KIV--GSQIHFHGKKLKLGPAIRKQ 282
>UNIPROTKB|F5H3W3 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15964
EMBL:AC006983 EMBL:AC007039 EMBL:AC053490 IPI:IPI00985133
ProteinModelPortal:F5H3W3 SMR:F5H3W3 Ensembl:ENST00000382424
ArrayExpress:F5H3W3 Bgee:F5H3W3 Uniprot:F5H3W3
Length = 606
Score = 194 (73.4 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|Q1RMF9 [details] [associations]
symbol:DAZ1 "DAZ1 protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:NP_004072.3
UniGene:Hs.522868 UniGene:Hs.70936 GeneID:1617 KEGG:hsa:1617
CTD:1617 HGNC:HGNC:2682 PharmGKB:PA27149 HOVERGEN:HBG048860
GenomeRNAi:1617 NextBio:6642 EMBL:AC053490 EMBL:AC010088
EMBL:BC114927 IPI:IPI00942129 SMR:Q1RMF9 STRING:Q1RMF9
Ensembl:ENST00000382510 Uniprot:Q1RMF9
Length = 613
Score = 194 (73.4 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
Score = 193 (73.0 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 365 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 424
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 425 KIV--GSQIHFHGKKLKLGPAIRKQ 447
Score = 193 (73.0 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 200 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 259
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 260 KIV--GSQIHFHGKKLKLGPAIRKQ 282
>UNIPROTKB|E9PBY2 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15964
EMBL:AC006983 EMBL:AC007039 EMBL:AC053490 IPI:IPI00644348
ProteinModelPortal:E9PBY2 SMR:E9PBY2 PRIDE:E9PBY2
Ensembl:ENST00000382440 OMA:DSKIPEF ArrayExpress:E9PBY2 Bgee:E9PBY2
Uniprot:E9PBY2
Length = 654
Score = 194 (73.4 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
>UNIPROTKB|Q9NQZ3 [details] [associations]
symbol:DAZ1 "Deleted in azoospermia protein 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0045948
EMBL:AC006338 EMBL:AF271087 EMBL:AF271088 IPI:IPI00334616
RefSeq:NP_004072.3 UniGene:Hs.522868 UniGene:Hs.70936
ProteinModelPortal:Q9NQZ3 SMR:Q9NQZ3 IntAct:Q9NQZ3 MINT:MINT-254473
STRING:Q9NQZ3 PhosphoSite:Q9NQZ3 DMDM:44887841 PRIDE:Q9NQZ3
Ensembl:ENST00000405239 GeneID:1617 KEGG:hsa:1617 UCSC:uc004fvl.3
CTD:1617 GeneCards:GC0YM025275 HGNC:HGNC:2682 MIM:400003 MIM:415000
neXtProt:NX_Q9NQZ3 Orphanet:1646 PharmGKB:PA27149 eggNOG:KOG0118
HOGENOM:HOG000207950 HOVERGEN:HBG048860 InParanoid:Q9NQZ3
OMA:NYQAYSP GenomeRNAi:1617 NextBio:6642 ArrayExpress:Q9NQZ3
Bgee:Q9NQZ3 CleanEx:HS_DAZ1 Genevestigator:Q9NQZ3
GermOnline:ENSG00000188120 Uniprot:Q9NQZ3
Length = 744
Score = 194 (73.4 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 45/123 (36%), Positives = 69/123 (56%)
Query: 1 MSGAHXXXXXXXXXXXXXTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+ TQ+++ Q V P+ G +VP VFVGGI + E E+
Sbjct: 1 MSAANPETPNSTISREASTQSSSAAASQGWV---LPE-GKIVPNTVFVGGIDARMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L + PAI
Sbjct: 57 GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKLGPAI 114
Query: 121 KKQ 123
+KQ
Sbjct: 115 RKQ 117
Score = 193 (73.0 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 365 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 424
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 425 KIV--GSQIHFHGKKLKLGPAIRKQ 447
Score = 193 (73.0 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 200 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 259
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 260 KIV--GSQIHFHGKKLKLGPAIRKQ 282
>ZFIN|ZDB-GENE-000405-6 [details] [associations]
symbol:dazl "deleted in azoospermia-like"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0043565 "sequence-specific DNA
binding" evidence=IMP] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] [GO:0045495 "pole plasm" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0048477 "oogenesis" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-000405-6 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0007283 GO:GO:0008494 GO:GO:0003730 GO:GO:0010628
eggNOG:NOG260394 GO:GO:0070935 OrthoDB:EOG4T783S CTD:1618
HOGENOM:HOG000246400 EMBL:AB018191 EMBL:BC076423 IPI:IPI00503000
RefSeq:NP_571599.1 UniGene:Dr.81259 ProteinModelPortal:Q9YGW7
STRING:Q9YGW7 GeneID:58039 KEGG:dre:58039 HOVERGEN:HBG048864
InParanoid:Q9YGW7 NextBio:20892303 ArrayExpress:Q9YGW7
GO:GO:0060965 Uniprot:Q9YGW7
Length = 229
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 36/85 (42%), Positives = 52/85 (61%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G + P +FVGGI E+E+ E F++YG VK+VKI+ R GI KGYGF+ F + + +
Sbjct: 42 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVDIQ 101
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
+ I FK K+L + PAI K+
Sbjct: 102 TIVDQP--ISFKGKKLKLGPAIMKE 124
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 166 (63.5 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P +FV + T + L E FSQYG V K+ D G+SKG+GFI F++ E A++ +
Sbjct: 72 PNGIFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGLSKGFGFIYFETPEAAQKACE 131
Query: 103 DSDNIMFKEKRLNIAPAIK 121
+++N + +R+N+AP IK
Sbjct: 132 EANNTFWHGRRINVAPRIK 150
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 154 (59.3 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKR-LQK 102
++FVGGI+ +T E L E FS+YG V KI+VDR G S+G+ F+TF S EEA +Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 103 DSDNIMFKEKRLNIAPAIKKQGFTG 127
D ++ + R+N A + GF G
Sbjct: 95 DGQDLHGRRIRVNYATE-RGSGFGG 118
>UNIPROTKB|E9PEG6 [details] [associations]
symbol:DAZ1 "Deleted in azoospermia protein 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:2682
EMBL:AC053490 EMBL:AC010088 IPI:IPI00943033
ProteinModelPortal:E9PEG6 SMR:E9PEG6 Ensembl:ENST00000445837
ArrayExpress:E9PEG6 Bgee:E9PEG6 Uniprot:E9PEG6
Length = 287
Score = 148 (57.2 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 57 EDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116
E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L +
Sbjct: 3 ETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKL 60
Query: 117 APAIKKQ 123
PAI+KQ
Sbjct: 61 GPAIRKQ 67
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 148 (57.2 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQK 102
K++FVGGI ST TEDEL + F++YG V + +++ D S+G+GF+ FDSEE L
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+ I + ++ I A K+
Sbjct: 169 KGNMIDMADTQVEIKKAEPKK 189
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 32/101 (31%), Positives = 56/101 (55%)
Query: 22 NAFFNYQAAVNNNAPKYG--TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR 79
N F +A +NA G ++ P ++FVGG++ +T + L E F +G + +V+DR
Sbjct: 12 NIFRQPRALQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDR 71
Query: 80 -AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119
+G+S+G+GF+T+DS E A + N + + + PA
Sbjct: 72 ESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>DICTYBASE|DDB_G0275971 [details] [associations]
symbol:DDB_G0275971 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275971
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
eggNOG:NOG260394 RefSeq:XP_643377.1 ProteinModelPortal:Q552K5
EnsemblProtists:DDB0203538 GeneID:8620261 KEGG:ddi:DDB_G0275971
InParanoid:Q552K5 Uniprot:Q552K5
Length = 699
Score = 150 (57.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRLQKD 103
++FVGGI+ E+ L F Q+G V + KI++D SKGYGFITF++E+ ++++
Sbjct: 104 KIFVGGISWKADENTLKTYFLQFGNVLECKIIMDYNTNKSKGYGFITFENEDSIEKVR-- 161
Query: 104 SDNIMFKEKRLNIAPAIKKQ-GFTGTYDXXXXXXXXXXXXXXXN-MYYHNGLPYTYH 158
+ N++F K +NI ++K G G+ + M +NG+ Y H
Sbjct: 162 TSNLLFMGKNMNIGDPVRKHNGSIGSNNLFNGVSMSNGYIGNGGIMNGNNGINYNGH 218
>UNIPROTKB|F5GYA8 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15964
EMBL:AC006983 EMBL:AC007039 EMBL:AC053490 IPI:IPI00910411
ProteinModelPortal:F5GYA8 SMR:F5GYA8 Ensembl:ENST00000536288
ArrayExpress:F5GYA8 Bgee:F5GYA8 Uniprot:F5GYA8
Length = 581
Score = 148 (57.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 57 EDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116
E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +++ I F K+L +
Sbjct: 4 ETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKKLKL 61
Query: 117 APAIKKQ 123
PAI+KQ
Sbjct: 62 GPAIRKQ 68
>WB|WBGene00007111 [details] [associations]
symbol:B0035.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0008340 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0018991 GO:GO:0040010 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 EMBL:Z73102
GeneTree:ENSGT00550000074656 HSSP:P33240 InterPro:IPR008669
Pfam:PF05391 eggNOG:NOG321927 OMA:SQAVMKM PIR:T18650
RefSeq:NP_502136.1 ProteinModelPortal:Q17430 SMR:Q17430
STRING:Q17430 PaxDb:Q17430 EnsemblMetazoa:B0035.12.1
EnsemblMetazoa:B0035.12.2 EnsemblMetazoa:B0035.12.3 GeneID:178053
KEGG:cel:CELE_B0035.12 UCSC:B0035.12.1 CTD:178053 WormBase:B0035.12
HOGENOM:HOG000017964 InParanoid:Q17430 NextBio:899522
Uniprot:Q17430
Length = 836
Score = 150 (57.9 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 37 KYGTVVPK-RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEE 95
K+ T + K +VFV + T+DEL LFS++G V V+ V + G KG F+ FD+E
Sbjct: 675 KFSTTLEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEA 734
Query: 96 EAKRLQKDSDNIMFKEKRLNIA---PAIKK 122
A++ D +M +E+ L +A P +KK
Sbjct: 735 SAQKCVASGDKLMLRERELEVALSNPPVKK 764
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 31 VNNNAPKYGTV---VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGY 86
+N++A + T V ++F+GG++ TTE L E FS+ G V + +IV+DR SKG+
Sbjct: 18 INSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGF 77
Query: 87 GFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTG 127
GF+TF S +EA++ + + + + + A KQ G
Sbjct: 78 GFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGG 118
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 26/55 (47%), Positives = 41/55 (74%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGYGFITFDSEEEAK 98
++FVGG+ TTE+ L ++FS+YG V +V +V DR S+G+GF+TF++ E+AK
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAK 61
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/81 (33%), Positives = 50/81 (61%)
Query: 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
T+ +++VG ++ T DEL F QYG +++ K+++DR G SKG+ FIT+ +++ A+
Sbjct: 14 TMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQ 73
Query: 99 RLQKDSDNIMFKEK--RLNIA 117
++ I + + R+NIA
Sbjct: 74 EAVSKANGIDLQGRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/81 (33%), Positives = 50/81 (61%)
Query: 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
T+ +++VG ++ T DEL F QYG +++ K+++DR G SKG+ FIT+ +++ A+
Sbjct: 14 TMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQ 73
Query: 99 RLQKDSDNIMFKEK--RLNIA 117
++ I + + R+NIA
Sbjct: 74 EAVSKANGIDLQGRKIRVNIA 94
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 145 (56.1 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 46 VFVGGITSTTTEDELCELF-SQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKD 103
+FVG + + T+ L E F + Y VK K+V+DR G +KGYGF+ F E E R +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 104 SDNIMFKEKRLNIAPAIKKQGFTGTYD 130
+ + + + I PA K+G TG D
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRD 243
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++F+GG+ TT+D L E FS+YG +++ +V DR S+G+GF+ F SE EA
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 104 SDNIMFKEKRLNI-----APAIKKQGFTG 127
+N F + + + PA + GF G
Sbjct: 63 MNNQEFDGRIIRVDKASERPAARNGGFQG 91
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 24/82 (29%), Positives = 49/82 (59%)
Query: 37 KYGTVVPK-RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEE 95
+Y T + K ++F+ G+ + T++EL E+ +G VK +++V +RAG KG ++ +++E
Sbjct: 32 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENES 91
Query: 96 EAKRLQKDSDNIMFKEKRLNIA 117
+A + D + KE + +A
Sbjct: 92 QASQAVMKMDGMTIKENIIKVA 113
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRL 114
D + M + L
Sbjct: 67 DMNGKMMVDTLL 78
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++F+GG+ T E+ L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 104 SDNIMFKEKRLNIAPAIKKQG 124
+ +++ + A K G
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSG 86
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRL 100
+ ++FV +++ TT+ L +LFS +G +K+ +++ D KG+GFITFDSE++A++
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 101 QKDSD 105
K D
Sbjct: 65 LKSLD 69
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 131 (51.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 34 NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFD 92
N+P +G +VFVGG+ T + L + F QYG + + ++ D+ G SKGYGF+TF
Sbjct: 15 NSP-FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFR 73
Query: 93 SEEEAKRLQKDSDNIM 108
E A+R D I+
Sbjct: 74 DPEAARRACADPTPII 89
Score = 42 (19.8 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 146 NMYYHNGLPYTYHNGMAF 163
N Y LPY Y G+ +
Sbjct: 140 NYPYQQPLPYNYQQGVVY 157
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQ 101
P ++F+GG+ + T E L +F +YG + +V ++ DR S+G+ F+TF+S +AK
Sbjct: 7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAA 66
Query: 102 KDSDNIMFKEKRLNIAPAIKKQGFTGTY 129
+D + K + + A K F Y
Sbjct: 67 RDMNGKSLDGKAIKVEQATKPS-FENVY 93
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 141 (54.7 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 76 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 134
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 135 GYGFITFSDSECAKK 149
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRL 100
K++FVGGI T E L + F QYG ++ ++I+ DR +G +G+ F+TFD + ++
Sbjct: 56 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 113
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 136 (52.9 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++F+GG++ TTE L E FS+YG + +V ++ DR S+G+GF+TF++ E+AK
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 104 SDNIMFKEKRLNIAPAIKKQGFTGTY 129
+ + + + A K G +G +
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGGRSGGF 109
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 141 (54.7 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 123 (48.4 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
RV+VG ++ TTT+D L E FS YG V ++ DR S+G+GF+T+ S EA+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 104 SDNIMFKEKRLNI 116
D +R+++
Sbjct: 64 MDGKELNGRRVSV 76
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 138 (53.6 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 38 YGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEE 96
+G +VFVGG+ T DE+ F Q+G + + I+ D+A G SKGYGF+TF +
Sbjct: 11 FGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDS 70
Query: 97 AKRLQKDSDNIMFKEK-RLNIA 117
A R D + ++ K NIA
Sbjct: 71 ATRAVADPNPVIDGRKANCNIA 92
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 143 (55.4 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRLQKD 103
R+F+ I+ +E++ LFSQYG +++V I +D R G SKG+ ++ F +E+A R +
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370
Query: 104 SDNIMFKEKRLNIAPAIKKQ 123
D +F+ + L+I PA KK+
Sbjct: 371 LDKQIFQGRLLHILPADKKK 390
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 141 (54.7 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 141 (54.7 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 141 (54.7 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 141 (54.7 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 141 (54.7 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 141 (54.7 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 141 (54.7 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 141 (54.7 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 121 (47.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEE 95
K++FVGGI T E L + F QYG ++ ++I+ DR +G +G+ F+TFD +
Sbjct: 60 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 112
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 138 (53.6 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/84 (33%), Positives = 54/84 (64%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGIS---KGYGFITFDSEEEAKRL 100
K++FVGG++S TTE+E F ++G + +VV G++ +G+GF+T+DSE+ + +
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFG--RTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVV 177
Query: 101 QKDSDNIMFKEKRLNIAPAIKKQG 124
+ + + + +KR+ + AI K+G
Sbjct: 178 MQSNFHEL-SDKRVEVKRAIPKEG 200
Score = 111 (44.1 bits), Expect = 0.00041, P = 0.00041
Identities = 24/79 (30%), Positives = 48/79 (60%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKD 103
++FVGGI T+E+ L + FS+YG V + + ++ G +G+GF+ F ++ + + +D
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 104 SDNIMFKEKRLNIAPAIKK 122
+ I+ K +++ AI+K
Sbjct: 67 THFILGKP--VDVRKAIRK 83
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGIS-KGYGFITFDSEEEAKR 99
+FV GI+ ++TE+ L + FSQYG V +V +++D+ KG+ ++TF S+EEA++
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 21/65 (32%), Positives = 44/65 (67%)
Query: 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
T+ R+FV G++ TT ++L + F+ +G + +++ DR +G SKG+GF+T+ + E+A+
Sbjct: 30 TLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAE 89
Query: 99 RLQKD 103
+ + +
Sbjct: 90 KAKAE 94
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 122 (48.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 140 (54.3 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 30/100 (30%), Positives = 55/100 (55%)
Query: 19 TQNNAFFNYQAAVNNNAPKYGTVVPKR-VFVGGITSTTTEDELCELFSQYGIVKQVKIVV 77
T+ + ++ NN + G P+R +F+ + ++ T + L E FSQ ++K +VV
Sbjct: 11 TEASGAITESSSSKNNVQEDGATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVV 70
Query: 78 D-RAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116
D + SKGYGF+TF E+AK ++ + F+ K++ +
Sbjct: 71 DPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKV 110
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 119 (46.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA 117
+ I+ K +N+A
Sbjct: 72 PNPIIDGRKANVNLA 86
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 119 (46.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKR 99
V R FVGG+ T + L FS+YG V KI+ DR G S+G+GF+TF S+E ++
Sbjct: 4 VEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 119 (46.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG++ T + L + F+ +G V + ++ DR G S+G+GF++F E+ A K+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 104 SDN--IMFKEKRLNIA 117
D + ++ R+N+A
Sbjct: 96 MDGKELNGRQIRVNLA 111
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 136 (52.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQGF 125
D + K + + A KK F
Sbjct: 67 DMNGTSLHGKAIKVEQA-KKPSF 88
Score = 35 (17.4 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 150 HNGLPYTYHNG 160
H+ Y+YH+G
Sbjct: 362 HSSRGYSYHDG 372
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 136 (52.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 30/98 (30%), Positives = 53/98 (54%)
Query: 28 QAAVNNNAPKYGTVVP-KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G++V K++FVGGI T E L E F +YG + ++I+ DR +G +G
Sbjct: 95 RAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRG 154
Query: 86 YGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123
+GF+TFD + ++ + + R + A+ +Q
Sbjct: 155 FGFVTFDDYDPVDKIMLQKYHAI-NGHRAEVGKALSRQ 191
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 138 (53.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G + +++++D G SK
Sbjct: 229 NRAAALANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSK 287
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 288 GYGFITFSDAECAKK 302
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 137 (53.3 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQK 102
K++FVGGI S+ +DE E F Q+G +K+ +I+ D + G S+G+GF+T++SE+ L
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+ I ++ I A K+
Sbjct: 190 KGNRIELSGTQVEIKKAEPKK 210
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 138 (53.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
V+V + T T+D L LFSQYG V V ++ D G S+G+GF+ F + E AK+ +
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 106 NIMFKEKRLNIAPAIKK 122
+ K+L + A+KK
Sbjct: 264 GLQLGSKKLFVGKALKK 280
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 118 (46.6 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRLQK 102
K ++VG ++ TED+L LFS G V V I+ D G SKG G++ +EEEAK +
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 103 DSDNIMFKEKRLNIAPA 119
D + + + + ++ A
Sbjct: 63 TLDGALLRNRVITVSVA 79
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 118 (46.6 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRLQK 102
K ++VG ++ TED+L LFS G V V I+ D G SKG G++ +EEEAK +
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 103 DSDNIMFKEKRLNIAPA 119
D + + + + ++ A
Sbjct: 63 TLDGALLRNRVITVSVA 79
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 117 (46.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQ 101
P ++F+GG+ + T E L +F +YG + +V ++ DR S+G+ F+TF+S +AK
Sbjct: 7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAA 66
Query: 102 KDSDNIM 108
+D + M
Sbjct: 67 RDMNGKM 73
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 117 (46.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQ 101
P ++F+GG+ + T E L +F +YG + +V ++ DR S+G+ F+TF+S +AK
Sbjct: 9 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAA 68
Query: 102 KDSDNIM 108
+D + M
Sbjct: 69 RDMNGKM 75
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 117 (46.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/82 (30%), Positives = 50/82 (60%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRL-Q 101
K++FVGG++ T E+++ E F +G V+ +++ +D + +G+ FITF EE K++ +
Sbjct: 34 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 93
Query: 102 KDSDNIMFKEKRLNIAPAIKKQ 123
K N+ + + +A + K+Q
Sbjct: 94 KKYHNVGLSKCEIKVAMS-KEQ 114
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 117 (46.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDS 104
V+VG TTED+L FSQ G V V+IV DR G +G+ F+ F E A+R
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 105 DNIMFKEK--RLNIA 117
+ + F + R+N+A
Sbjct: 66 NGVDFNGRALRVNLA 80
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 117 (46.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDS 104
V+VG TTED+L FSQ G V V+IV DR G +G+ F+ F E A+R
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 105 DNIMFKEK--RLNIA 117
+ + F + R+N+A
Sbjct: 66 NGVDFNGRALRVNLA 80
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 133 (51.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 38 YGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEE 96
+G +VFVGG+ T DE+ F Q+G + + I+ D+ G SKGYGF+TF +
Sbjct: 11 FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70
Query: 97 AKRLQKDSDNIMFKEK-RLNIA 117
A R D + ++ K NIA
Sbjct: 71 ATRAVADPNPVIDGRKANCNIA 92
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 136 (52.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQGF 125
D + K + + A KK F
Sbjct: 67 DMNGTSLHGKAIKVEQA-KKPSF 88
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 116 (45.9 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 37 KYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEE 95
K G V R+FVG + T EL F ++G V ++ D R G SKGYGF++F+S
Sbjct: 9 KVGKSV-HRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLT 67
Query: 96 EAKRLQKDSDNIMFKEKRLNI 116
++++ + +I+ + LNI
Sbjct: 68 ALEKIENEQKHIL-EGNYLNI 87
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 116 (45.9 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++F+GG++ T + L + F+ +G V K++VDR G S+G+GF+ F+ E A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 104 SDNIMFKEKRLNIAPA 119
D + + + PA
Sbjct: 96 MDGKELNGRHIRVNPA 111
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 120 (47.3 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++F+GG+ T ED L + F++YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 104 SDNIMFKEKRLNIAPAIKKQG 124
+ +++ + A K G
Sbjct: 66 MNGKSVDGRQIRVDQAGKSSG 86
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 134 (52.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQGF 125
D + K + + A KK F
Sbjct: 67 DMNGKSLHGKAIKVEQA-KKPSF 88
Score = 35 (17.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 150 HNGLPYTYHNG 160
H+ Y+YH+G
Sbjct: 362 HSSRGYSYHDG 372
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 134 (52.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQGF 125
D + K + + A KK F
Sbjct: 67 DMNGKSLHGKAIKVEQA-KKPSF 88
Score = 35 (17.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 150 HNGLPYTYHNG 160
H+ Y+YH+G
Sbjct: 362 HSSRGYSYHDG 372
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 134 (52.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQGF 125
D + K + + A KK F
Sbjct: 67 DMNGKSLHGKAIKVEQA-KKPSF 88
Score = 35 (17.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 150 HNGLPYTYHNG 160
H+ Y+YH+G
Sbjct: 362 HSSRGYSYHDG 372
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 134 (52.2 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQGF 125
D + K + + A KK F
Sbjct: 67 DMNGKSLHGKAIKVEQA-KKPSF 88
Score = 35 (17.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 150 HNGLPYTYHNG 160
H+ Y+YH+G
Sbjct: 362 HSSRGYSYHDG 372
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|E1BV45 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:AADN02049470
IPI:IPI00602926 ProteinModelPortal:E1BV45
Ensembl:ENSGALT00000015109 OMA:LNPPKCT Uniprot:E1BV45
Length = 243
Score = 130 (50.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V VG +T T+D + E+FS YG +K + + VDR +SKGY ++ F++ ++A++
Sbjct: 160 PTKVHVGRLTRNVTKDHIMEIFSTYGKIKMIDMPVDRLNPHLSKGYAYVEFENPDDAEKA 219
Query: 101 QKDSD 105
K D
Sbjct: 220 LKHMD 224
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 115 (45.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQ 101
P ++F+GG+ + T E L +F +YG + +V ++ DR S+G+ F+TF+S +AK
Sbjct: 9 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAA 68
Query: 102 KD 103
+D
Sbjct: 69 RD 70
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 128 (50.1 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRL 100
K++FVGGI T E L + F QYG ++ ++I+ DR KG+ F+TFD + ++
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKGFAFVTFDDHDSVDKI 160
Score = 36 (17.7 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 217 PLNSSQCKIKQSRGRLLSRACSSSSQ 242
P+N C+++++ + A +SS+Q
Sbjct: 167 PVNGHSCEVRKALSKQ-EMASASSTQ 191
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 122 (48.0 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 134 (52.2 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQGF 125
D + K + + A KK F
Sbjct: 67 DMNGKSLHGKAIKVEQA-KKPSF 88
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 134 (52.2 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQGF 125
D + K + + A KK F
Sbjct: 67 DMNGKSLHGKAIKVEQA-KKPSF 88
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 132 (51.5 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F++YG + ++I+ DR +G +G
Sbjct: 83 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRG 142
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 143 FGFVTFDDHDPVDKIVLQK 161
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 131 (51.2 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 43 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 102
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 103 FGFVTFDDHDPVDKIVLQK 121
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 121 (47.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 121 (47.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 121 (47.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 132 (51.5 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 32/91 (35%), Positives = 50/91 (54%)
Query: 37 KYGTVVP-KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSE 94
K G ++ K++FVGGIT E L + F +YG + ++IV D ++G +G+GFITFD
Sbjct: 104 KLGALITVKKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDH 163
Query: 95 EEAKR--LQKDSDNIMFKEKRLNIAPAIKKQ 123
+ + LQK N R + A+ +Q
Sbjct: 164 DPVDKIVLQK---NHTINGHRAEVRKALSRQ 191
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 127 (49.8 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISK 84
N AA+ NN K G P R++VG + TED L +F +G + + ++ D G SK
Sbjct: 21 NRLAAMANNLQK-GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSK 79
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E A+R
Sbjct: 80 GYGFITFSDSECARR 94
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 131 (51.2 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGY 86
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G+
Sbjct: 83 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKRGF 142
Query: 87 GFITFDSEEEAKR--LQK 102
GF+TFD + + LQK
Sbjct: 143 GFVTFDDHDPVDKIVLQK 160
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 131 (51.2 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 94 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 153
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 154 FGFVTFDDHDPVDKIVLQK 172
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 128 (50.1 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A R KD
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGFT 126
+ I+ K +N+A P + + GFT
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRVMQPGFT 100
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKR 99
V R FVGG+ T +++L FSQ+G V KI+ DR +G S+G+GF+TF +E+A R
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF-KDEKAMR 61
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 131 (51.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 83 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 142
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 143 FGFVTFDDHDPVDKIVLQK 161
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 91 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 150
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 151 FGFVTFDDHDPVDKIVLQK 169
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 94 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 153
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 154 FGFVTFDDHDPVDKIVLQK 172
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 95 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 154
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 155 FGFVTFDDHDPVDKIVLQK 173
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 95 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 154
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 155 FGFVTFDDHDPVDKIVLQK 173
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 95 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 154
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 155 FGFVTFDDHDPVDKIVLQK 173
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 95 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 154
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 155 FGFVTFDDHDPVDKIVLQK 173
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 95 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRG 154
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 155 FGFVTFDDHDPVDKIFLQK 173
>UNIPROTKB|H3BV80 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BV80 SMR:H3BV80 Ensembl:ENST00000569598
Bgee:H3BV80 Uniprot:H3BV80
Length = 211
Score = 126 (49.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 66 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 125
Query: 101 QKDSD 105
K D
Sbjct: 126 LKHMD 130
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 132 (51.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISK 84
N AA+ NN K GT P R++VG + TED L +F +G + + ++ D G SK
Sbjct: 237 NRLAAMANNLQK-GTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSK 295
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E A+R
Sbjct: 296 GYGFITFSDSECARR 310
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 112 (44.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDS 104
V+VG TTE+EL FS G + V+IV DR G +G+ FI F E A+R +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 105 DNIMFKEK--RLNIA 117
+ F + R+N+A
Sbjct: 67 NGAEFNGRPLRVNLA 81
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 128 (50.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 34 NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFD 92
N+P +G +VFVGG+ T + L F QYG + + ++ D+ G SKGYGF+TF
Sbjct: 15 NSP-FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFR 73
Query: 93 SEEEAKRLQKDSDNIM 108
E A+R D I+
Sbjct: 74 DPEAARRACVDPTPII 89
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 21/55 (38%), Positives = 39/55 (70%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++F+GG++ TTE L + FS+YG++ V + +R S+G+GF+TF++ ++AK
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAK 60
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/55 (43%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L +FS+YG +++V +V DR S+G+GF+TF++ E+AK
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAK 61
>UNIPROTKB|P0DJD4 [details] [associations]
symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
family 1 member C" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
Uniprot:P0DJD4
Length = 496
Score = 130 (50.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIK 121
D + K + + A K
Sbjct: 67 DMNGKSLHGKAIKVEQAQK 85
Score = 35 (17.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 150 HNGLPYTYHNG 160
H+ Y+YH+G
Sbjct: 362 HSSRGYSYHDG 372
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 127 (49.8 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISK 84
N AA+ NN K G P R++VG + TED L +F +G + + ++ D G SK
Sbjct: 76 NRLAAMANNLQK-GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSK 134
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E A+R
Sbjct: 135 GYGFITFSDSECARR 149
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 125 (49.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRIMQPGF 99
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 125 (49.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRIMQPGF 99
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 125 (49.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRIMQPGF 99
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 125 (49.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRIMQPGF 99
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 132 (51.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
++V + TE+EL + FSQ G + K++ D G SKG+GF+ F + EEA K
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 106 NIMFKEKRLNIAPAIKKQ 123
MF K L +A A KK+
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 126 (49.4 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGFT 126
+ I+ K +N+A P I + GF+
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRILQPGFS 100
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 129 (50.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G V K++FVGGI T E L + F +YG V ++I+ DR +G +G
Sbjct: 95 RAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRG 154
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF TFD + + LQK
Sbjct: 155 FGFFTFDDHDPVDKIVLQK 173
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 129 (50.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 27 YQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGY 86
Y+A KY V +FV + T ++L E F +G + K++VD AG SKG+
Sbjct: 322 YEAVRLEKLAKYQGV---NLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGF 378
Query: 87 GFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122
GF+ F + EEA + + + M K L +A A +K
Sbjct: 379 GFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRK 414
Score = 39 (18.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 153 LPYTYHNGMAFFPSNGQ 169
+P ++ FFP NG+
Sbjct: 446 IPPMFYGQQGFFPPNGR 462
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 110 (43.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 25/81 (30%), Positives = 49/81 (60%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEA-KRLQK 102
+++VG + E++L + FS++G ++ VKIV + R G SKGY F+T+ + ++A K L
Sbjct: 45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA 104
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
++ + + IA + ++Q
Sbjct: 105 HGKDLQGRSLVVRIAKSREQQ 125
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 110 (43.8 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 25/81 (30%), Positives = 49/81 (60%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEA-KRLQK 102
+++VG + E++L + FS++G ++ VKIV + R G SKGY F+T+ + ++A K L
Sbjct: 45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA 104
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
++ + + IA + ++Q
Sbjct: 105 HGKDLQGRSLVVRIAKSREQQ 125
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 122 (48.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
Query: 104 SD-NIMFKEKRLNIA 117
+ NI ++ +N+A
Sbjct: 95 PNPNIDGRKANVNLA 109
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 118 (46.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
+++VGG+ TT ++ L F ++G + V +V DR S+GYGF+TF E A R KD
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
>UNIPROTKB|H3BMS0 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BMS0 SMR:H3BMS0 Ensembl:ENST00000567147
Bgee:H3BMS0 Uniprot:H3BMS0
Length = 257
Score = 126 (49.4 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 137 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 196
Query: 101 QKDSD 105
K D
Sbjct: 197 LKHMD 201
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 125 (49.1 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 38 YGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEE 96
Y TV K++FVGGI T E L + F QYG + ++IV DR +G +G+ F+TFD +
Sbjct: 94 YLTV--KKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDS 151
Query: 97 AKRL 100
++
Sbjct: 152 VDKI 155
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 128 (50.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 28 QAAVNNNAPKYGT-VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A + K G + K++FVGGI T E L + F +YG + ++I+ DR +G +G
Sbjct: 95 RAVAREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRG 154
Query: 86 YGFITFDSEEEAKR--LQK 102
+GF+TFD + + LQK
Sbjct: 155 FGFVTFDDHDPVDKIVLQK 173
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 125 (49.1 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRIMQPGF 99
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 127 (49.8 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 28 QAAVNNNAPKYGTVVP-KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKG 85
+A ++P+ G ++ K++FVGGI T E L + F QYG ++ ++ + DR +G +G
Sbjct: 83 RAVSQEDSPRPGVLLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRG 142
Query: 86 YGFITFDSEEEAKRL 100
+ F+TFD + ++
Sbjct: 143 FAFVTFDDHDSVDKI 157
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 124 (48.7 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRL 100
K++FVGGI T E L + F QYG ++ ++I+ DR +G +G+ F+TFD + ++
Sbjct: 124 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 181
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 57 EDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116
++ L +LF ++G VK++ D +G SKG+GF++F+ E+A++ + + K++ +
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 117 APAIKK 122
A KK
Sbjct: 62 GRAQKK 67
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++F+GG++ + E L + FS +G V +V+I D+ +G S+G+GF+ F E +A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 104 SDNIMFKEKRLNIAPAIKK 122
D + L I+ A+++
Sbjct: 102 MDGKGLLGRPLRISFALER 120
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 131 (51.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/78 (33%), Positives = 47/78 (60%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
++V + T T+++L ELF+++G + K++ D +G SKG GF+ F + EA R+ + +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 106 NIMFKEKRLNIAPAIKKQ 123
M K L +A A +K+
Sbjct: 390 GKMVGGKPLYVALAQRKE 407
Score = 121 (47.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
+FV + + L E FS G + K+ D G S+GYGF+ FD+E+ AK + +
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 106 NIMFKEKRLNIAPAIKKQ 123
+ +K++ + P ++K+
Sbjct: 196 GKVLNDKQIFVGPFLRKE 213
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
V+V ++ TT+DEL F QYG + ++ D G S+ +GF+ F++ E+A R + +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 106 NIMFKEKRLNIAPAIKK 122
F +K + A KK
Sbjct: 287 GKKFDDKEWYVGKAQKK 303
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 122 (48.0 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 129 (50.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G + + ++ D G SK
Sbjct: 247 NRLAAMANNLQK-GSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSK 305
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E A+R
Sbjct: 306 GYGFITFSDSECARR 320
>UNIPROTKB|H3BMM9 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000561518
Bgee:H3BMM9 Uniprot:H3BMM9
Length = 284
Score = 126 (49.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 219
Query: 101 QKDSD 105
K D
Sbjct: 220 LKHMD 224
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 121 (47.7 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKR 99
K++FVGG+ E +L E FSQ+G V++ +I+ D+ +G +G+GF+ F S + A +
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADK 154
>ZFIN|ZDB-GENE-050706-77 [details] [associations]
symbol:snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050706-77 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:Q14103 GeneTree:ENSGT00530000063750 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD
OrthoDB:EOG4MSD0C EMBL:BC098619 IPI:IPI00616423
RefSeq:NP_001025412.1 UniGene:Dr.47462 ProteinModelPortal:Q4KMD3
Ensembl:ENSDART00000065243 GeneID:569999 KEGG:dre:569999
InParanoid:Q4KMD3 NextBio:20889939 Bgee:Q4KMD3 Uniprot:Q4KMD3
Length = 208
Score = 112 (44.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKDS 104
+FV + TTE++L ++FS++G ++++++V D G SK Y FI + E KR +D+
Sbjct: 52 LFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDA 111
Query: 105 DNIMFKEKRL 114
+ ++ + L
Sbjct: 112 NKLILDQYEL 121
Score = 42 (19.8 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 212 RPSLKPLNSSQCKIKQSRGRLLSR 235
RP KP+N S + + RGR R
Sbjct: 159 RPFRKPINLSTRRPAEPRGRETER 182
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 127 (49.8 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 119 (46.9 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 48 VGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRLQKDSDN 106
V G++ TTE +L E+FS+YG + V +V D R G S+G+ F+ F+ +++K + ++
Sbjct: 22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81
Query: 107 IMFKEKRLNIAPAIKKQGFTGT 128
+ +R+ + +I K+ T T
Sbjct: 82 MELDGRRIRVDYSITKRAHTPT 103
>UNIPROTKB|H3BTC0 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000565870
Bgee:H3BTC0 Uniprot:H3BTC0
Length = 302
Score = 126 (49.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 219
Query: 101 QKDSD 105
K D
Sbjct: 220 LKHMD 224
>UNIPROTKB|A6QR16 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9913 "Bos taurus" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:BC150075
IPI:IPI00867269 RefSeq:NP_001095311.1 UniGene:Bt.20502
ProteinModelPortal:A6QR16 STRING:A6QR16 Ensembl:ENSBTAT00000013151
GeneID:504506 KEGG:bta:504506 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 InParanoid:A6QR16 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM NextBio:20866696 Uniprot:A6QR16
Length = 305
Score = 126 (49.4 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 219
Query: 101 QKDSD 105
K D
Sbjct: 220 LKHMD 224
>UNIPROTKB|F6XEW2 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 CTD:10921 KO:K14325 OMA:TKRKDRT
Ensembl:ENSCAFT00000030839 EMBL:AAEX03004619 RefSeq:XP_537005.1
ProteinModelPortal:F6XEW2 GeneID:479880 KEGG:cfa:479880
Uniprot:F6XEW2
Length = 305
Score = 126 (49.4 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 219
Query: 101 QKDSD 105
K D
Sbjct: 220 LKHMD 224
>UNIPROTKB|Q15287 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP;IDA;TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471112
TCDB:3.A.18.1.1 GO:GO:0003730 GO:GO:0006406 GO:GO:0000398
Reactome:REACT_1788 EMBL:AC009065 GO:GO:0006369 GO:GO:0031124
Reactome:REACT_78 CTD:10921 eggNOG:NOG331533 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM EMBL:L37368 EMBL:AF015608 EMBL:AF274003
EMBL:AK289955 EMBL:AK293343 EMBL:AK303100 EMBL:AK316132
EMBL:BC001659 EMBL:BC001838 EMBL:BC108316 EMBL:AF247662
IPI:IPI00033561 IPI:IPI00479871 IPI:IPI00783594 PIR:JC4525
RefSeq:NP_006702.1 RefSeq:NP_542161.1 UniGene:Hs.355643
UniGene:Hs.507343 UniGene:Hs.733012 PDB:4A8X PDBsum:4A8X
ProteinModelPortal:Q15287 SMR:Q15287 DIP:DIP-32943N IntAct:Q15287
MINT:MINT-1474621 STRING:Q15287 PhosphoSite:Q15287 DMDM:74754492
PaxDb:Q15287 PRIDE:Q15287 DNASU:10921 Ensembl:ENST00000301730
Ensembl:ENST00000320225 Ensembl:ENST00000397086
Ensembl:ENST00000565678 Ensembl:ENST00000566458
Ensembl:ENST00000568631 GeneID:10921 KEGG:hsa:10921 UCSC:uc002cpt.3
UCSC:uc002cpx.3 GeneCards:GC16M002303 H-InvDB:HIX0031789
HGNC:HGNC:10080 HPA:HPA044014 MIM:606447 neXtProt:NX_Q15287
PharmGKB:PA34453 HOVERGEN:HBG053138 InParanoid:Q15287 ChiTaRS:RNPS1
GenomeRNAi:10921 NextBio:41487 ArrayExpress:Q15287 Bgee:Q15287
CleanEx:HS_RNPS1 Genevestigator:Q15287 GermOnline:ENSG00000205937
Uniprot:Q15287
Length = 305
Score = 126 (49.4 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 219
Query: 101 QKDSD 105
K D
Sbjct: 220 LKHMD 224
>MGI|MGI:97960 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:97960 GO:GO:0005737
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OMA:TKRKDRT OrthoDB:EOG44J2KM
HOVERGEN:HBG053138 ChiTaRS:RNPS1 EMBL:AK146443 EMBL:AK151150
EMBL:AK165905 EMBL:BC002061 EMBL:BC008089 IPI:IPI00462424
IPI:IPI00656166 RefSeq:NP_001073596.1 RefSeq:NP_001073597.1
RefSeq:NP_033096.2 UniGene:Mm.1951 ProteinModelPortal:Q99M28
SMR:Q99M28 STRING:Q99M28 PhosphoSite:Q99M28 PaxDb:Q99M28
PRIDE:Q99M28 Ensembl:ENSMUST00000088512 Ensembl:ENSMUST00000115371
Ensembl:ENSMUST00000163717 GeneID:19826 KEGG:mmu:19826
UCSC:uc008avs.1 UCSC:uc008avu.1 NextBio:297301 Bgee:Q99M28
CleanEx:MM_RNPS1 Genevestigator:Q99M28
GermOnline:ENSMUSG00000034681 Uniprot:Q99M28
Length = 305
Score = 126 (49.4 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 219
Query: 101 QKDSD 105
K D
Sbjct: 220 LKHMD 224
>RGD|1307522 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 126 (49.4 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 219
Query: 101 QKDSD 105
K D
Sbjct: 220 LKHMD 224
>UNIPROTKB|Q6AYK1 [details] [associations]
symbol:Rnps1 "RNA-binding protein with serine-rich domain
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 126 (49.4 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 219
Query: 101 QKDSD 105
K D
Sbjct: 220 LKHMD 224
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 119 (46.9 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 48 VGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRLQKDSDN 106
V G++ TTE +L E+FS+YG + V +V D R G S+G+ F+ F+ +++K + ++
Sbjct: 22 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANG 81
Query: 107 IMFKEKRLNIAPAIKKQGFTGT 128
+ +R+ + +I K+ T T
Sbjct: 82 MELDGRRIRVDYSITKRAHTPT 103
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 127 (49.8 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 127 (49.8 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 127 (49.8 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 127 (49.8 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 128 (50.1 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 32 NNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFIT 90
+++ P T V K++FVGGI T E+ L + F Q+G ++ V+I+VD + G +G+ F+T
Sbjct: 113 DSSKPFAHTTV-KKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVT 171
Query: 91 FDSEEEAKRL 100
FD + R+
Sbjct: 172 FDDHDSVDRI 181
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 119 (46.9 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 48 VGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRLQKDSDN 106
V G++ TTE +L E+FS+YG + V +V D R G S+G+ F+ F+ +++K + ++
Sbjct: 22 VFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANG 81
Query: 107 IMFKEKRLNIAPAIKKQGFTGT 128
+ +R+ + +I K+ T T
Sbjct: 82 MELDGRRIRVDYSITKRAHTPT 103
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 118 (46.6 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITF-DSEEEAKRLQK 102
+++VGG+ T + L F Q+G + V +V DR G S+GYGF+TF D+E + Q
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112
Query: 103 DSDNIMFKEKRLNIA 117
I +E + N+A
Sbjct: 113 PKPVIDGREAKCNLA 127
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 108 (43.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRL--- 100
+++VG + + +L F+ YG VK ++V+DRA G S+G+GF+ S++EA+
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 101 ----QKDSDNIMFKEKR 113
+ D N+M E R
Sbjct: 64 LNGKEMDGRNLMVNEAR 80
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 108 (43.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDS 104
V+VG + TE+E+ F+ G V V+IV DR G +G+ F+ F E A+R +
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 105 DNIMFKEKRLNIAPAIK 121
+ + F + L + A K
Sbjct: 68 NGVAFNGRNLRVNYANK 84
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 122 (48.0 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 116 (45.9 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 22/55 (40%), Positives = 39/55 (70%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++ VGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|E2R2P7 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R2P7 Ensembl:ENSCAFT00000030839 Uniprot:E2R2P7
Length = 320
Score = 126 (49.4 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + V+R +SKGY ++ F++ +EA++
Sbjct: 159 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA 218
Query: 101 QKDSD 105
K D
Sbjct: 219 LKHMD 223
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 122 (48.0 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGFT 126
+ I+ K +N+A P + GFT
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRSIQTGFT 100
>UNIPROTKB|E2QXZ2 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00550000074656
InterPro:IPR008669 Pfam:PF05391 OMA:SQAVMKM EMBL:AAEX03014754
Ensembl:ENSCAFT00000018071 Uniprot:E2QXZ2
Length = 1082
Score = 132 (51.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 25/82 (30%), Positives = 49/82 (59%)
Query: 37 KYGTVVPK-RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEE 95
+Y T + K ++FV G+ + T++EL E+ +G VK +++V +RAG KG ++ +++E
Sbjct: 912 RYSTALEKHKLFVSGLPFSCTKEELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENES 971
Query: 96 EAKRLQKDSDNIMFKEKRLNIA 117
+A + D + KE + +A
Sbjct: 972 QASQAVLKMDGMTIKENVIKVA 993
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 130 (50.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 27 YQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGY 86
Y+A +Y V ++V I +D L + FS +G + K++VD G SKG+
Sbjct: 329 YEALKQERVQRYQGV---NLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGF 385
Query: 87 GFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123
GF+ F+ EEA D ++ M K L +A A +K+
Sbjct: 386 GFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKE 422
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 127 (49.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 145 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 204
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 205 IEAEEAIK 212
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 127 (49.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 146 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 205
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 206 IEAEEAIK 213
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 127 (49.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 146 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 205
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 206 IEAEEAIK 213
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 126 (49.4 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKR--L 100
K++FVGGI T E L E F +YG + ++I+ DR +G +G+GF+TFD + + L
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVL 159
Query: 101 QK 102
QK
Sbjct: 160 QK 161
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 123 (48.4 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRIMQPGF 99
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 123 (48.4 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRIMQPGF 99
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 123 (48.4 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRIMQPGF 99
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 123 (48.4 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 72 PNPIIDGRKANVNLAYLGAKPRIMQPGF 99
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 127 (49.8 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 157 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 216
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 217 IEAEEAIK 224
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 124 (48.7 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRL 100
K++FVGGI T E L + F QYG ++ ++I+ DR +G +G+ F+TFD + ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 127 (49.8 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 46 VFVGGITSTTTEDELCELF-SQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
+FVG + + T+ L E F S Y V+ K+V DR G SKGYGF+ F E E R +
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTE 237
Query: 104 SDNIMFKEKRLNIAPAIKKQ 123
+ ++ + + I PA K+
Sbjct: 238 MNGVLCSTRPMRIGPAANKK 257
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 126 (49.4 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 122 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 181
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 182 IEAEEAIK 189
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 107 (42.7 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 28 QAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGY 86
+++ + AP+ +V VFV I TED++ + FS+YG +K + + +DR G KGY
Sbjct: 40 ESSATSGAPQR-SVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGY 98
Query: 87 GFITFDSEEEAKR-LQKDSD 105
+ +++++EA + + +D
Sbjct: 99 ALVEYETQKEANEAIDQSND 118
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 127 (49.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISK 84
N AA+ NN K G P R++VG + TED L +F +G + + ++ D G SK
Sbjct: 246 NRLAAMANNLQK-GNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSK 304
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E A+R
Sbjct: 305 GYGFITFSDSECARR 319
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 126 (49.4 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 184 IEAEEAIK 191
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 126 (49.4 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 184 IEAEEAIK 191
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 125 (49.1 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQK 102
K++FVGGI T E L + F QYG ++ ++I+ DR +G +G+ F+TFD + ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+ + K + A+ KQ
Sbjct: 165 QKYHTV-KGHNCEVRKALPKQ 184
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 126 (49.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 129 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 189 IEAEEAIK 196
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 126 (49.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 129 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 189 IEAEEAIK 196
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 129 (50.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 24/82 (29%), Positives = 49/82 (59%)
Query: 37 KYGTVVPK-RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEE 95
+Y T + K ++FV G+ + T++EL E+ +G VK +++V +RAG KG ++ +++E
Sbjct: 491 RYSTALEKHKLFVSGLPFSCTKEELEEICKAHGTVKDIRLVTNRAGKPKGLAYVEYENES 550
Query: 96 EAKRLQKDSDNIMFKEKRLNIA 117
+A + D + +E + +A
Sbjct: 551 QASQAVLKMDGMTIRENVIKVA 572
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 126 (49.4 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 126 (49.4 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
>ASPGD|ASPL0000043989 [details] [associations]
symbol:AN1517 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:BN001307
Gene3D:3.30.70.330 GO:GO:0003676 ProteinModelPortal:C8VMQ1
EnsemblFungi:CADANIAT00008145 Uniprot:C8VMQ1
Length = 450
Score = 127 (49.8 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 43 PKR-VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQ 101
PK+ VF+G + T ++L + ++YG+V+ V I+ D GISKGYG++ F S A+R
Sbjct: 269 PKQTVFIGNLFYDVTAEDLKKQMAKYGVVEGVNIIYDSRGISKGYGYVQFSSNAAARRAI 328
Query: 102 KDSDNIMFKEKRLNI 116
+F+ +R+ +
Sbjct: 329 DAMHMRIFEGRRVTL 343
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 123 (48.4 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 30 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 89
Query: 104 SDNIMFKEK-RLNIA-----PAIKKQGF 125
+ I+ K +N+A P I + GF
Sbjct: 90 PNPIIDGRKANVNLAYLGAKPRIMQPGF 117
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 126 (49.4 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 184 IEAEEAIK 191
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 126 (49.4 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 184 IEAEEAIK 191
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 126 (49.4 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
VFV +D+L ELFS+YG + VK++ D +G SKG+GF+ +++ E A++ D
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 106 NIMFKEKRLNIAPAIKK 122
K L + A KK
Sbjct: 261 GKSIDGKVLYVGRAQKK 277
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 126 (49.4 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 140 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 199
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 200 IEAEEAIK 207
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 126 (49.4 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 128 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 187
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 188 IEAEEAIK 195
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 126 (49.4 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 129 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 189 IEAEEAIK 196
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 126 (49.4 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 129 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 189 IEAEEAIK 196
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 121 (47.7 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
VFV I +++L ELF +YG + VK++ D +G SKG+GF+ +++ E A++ D
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 96
Query: 106 NIMFKEKRLNIAPAIKK 122
K L + A KK
Sbjct: 97 GKSIDGKVLYVGRAQKK 113
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 126 (49.4 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 145 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 204
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 205 IEAEEAIK 212
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 122 (48.0 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
Query: 104 SD-NIMFKEKRLNIA 117
+ NI ++ +N+A
Sbjct: 95 PNPNIDGRKANVNLA 109
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 122 (48.0 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGG+ TT+ L + F +G +++ ++ DR G S+GYGF+T A+R KD
Sbjct: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94
Query: 104 SD-NIMFKEKRLNIA 117
+ NI ++ +N+A
Sbjct: 95 PNPNIDGRKANVNLA 109
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 126 (49.4 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQ 101
P ++F+GG+ T E L F +YG + +V ++ DR S+G+ FITF+S +AK
Sbjct: 7 PGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAV 66
Query: 102 KDSDNIMFKEKRLNIAPAIK 121
+D + K + +A A K
Sbjct: 67 RDMNGKSLDGKAIKVAQATK 86
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 116 (45.9 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 22/55 (40%), Positives = 39/55 (70%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAK 98
++ VGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 124 (48.7 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRL 100
K++FVGGI T E L + F QYG ++ ++I+ DR +G +G+ F+TFD + ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 124 (48.7 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRL 100
K++FVGGI T E L + F QYG ++ ++I+ DR +G +G+ F+TFD + ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 124 (48.7 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRL 100
K++FVGGI T E L + F QYG ++ ++I+ DR +G +G+ F+TFD + ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 124 (48.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEA 97
++F+GG+ + ED L E F++YG V ++++DR G S+G+GF+TF S E A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94
>UNIPROTKB|D6RFL5 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00968211
ProteinModelPortal:D6RFL5 SMR:D6RFL5 Ensembl:ENST00000514782
ArrayExpress:D6RFL5 Bgee:D6RFL5 Uniprot:D6RFL5
Length = 137
Score = 106 (42.4 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
VFVG I EDEL +F G + ++++++D G ++GY F+ + + EAKR ++ +
Sbjct: 73 VFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELN 132
Query: 106 N 106
N
Sbjct: 133 N 133
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 121 (47.7 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKR 99
K++FVGG+ E +L E FSQ+G V++ +I+ D+ +G +G+GF+ F S + A +
Sbjct: 17 KKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADK 73
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 124 (48.7 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRL 100
K++FVGGI T E L + F QYG ++ ++I+ DR +G +G+ F+TFD + ++
Sbjct: 113 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 170
WARNING: HSPs involving 549 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 242 202 0.00090 111 3 11 22 0.48 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 799
No. of states in DFA: 573 (61 KB)
Total size of DFA: 152 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.27u 0.10s 18.37t Elapsed: 00:00:01
Total cpu time: 18.29u 0.11s 18.40t Elapsed: 00:00:01
Start: Thu Aug 15 14:13:35 2013 End: Thu Aug 15 14:13:36 2013
WARNINGS ISSUED: 2