RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15515
(242 letters)
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 70.4 bits (172), Expect = 2e-16
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA--GISKGYGFITFDSEEEAKR-L 100
++ V I + E+ ELFS +G +K V++ G +G+GF+ F ++++AK+
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 101 QKDSDNIMFKEKRLNIAPAIKK 122
+ +RL + A +
Sbjct: 69 NALCHSTHLYGRRLVLEWADSE 90
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 63.4 bits (154), Expect = 4e-14
Identities = 16/75 (21%), Positives = 39/75 (52%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS 104
++ V + ++ ++ ELF+++G +K+ + DR+G S G + F+ + +A + K
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 105 DNIMFKEKRLNIAPA 119
+ + + +NI
Sbjct: 62 NGVPLDGRPMNIQLV 76
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 63.0 bits (153), Expect = 5e-14
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIV-VDRAGISKGYGFITFDSEEEAKRLQKDS 104
++VG + TE L E FS G + +++ S GY ++ F +A+R
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 105 DNIMFKEKRLNIAPAIK 121
+ + K K + I + +
Sbjct: 63 NFDVIKGKPVRIMWSQR 79
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 62.7 bits (152), Expect = 9e-14
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQK 102
+ V G+ TTE +L E FS +G V V++ D G SKG+GF+ F E ++
Sbjct: 9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
M + + KQ
Sbjct: 69 QRH--MIDGRWCDCKLPNSKQ 87
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 62.3 bits (151), Expect = 1e-13
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKD 103
++F+GG++ TT++ L E F Q+G VK+ ++ D S+G+GF+TF + ++
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA- 60
Query: 104 SDNIMFKEKRLNIAPA 119
K ++ A
Sbjct: 61 QSRHELDSKTIDPKVA 76
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 63.1 bits (153), Expect = 1e-13
Identities = 11/81 (13%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQ 101
V + +++ + T +E+ ++F +YG ++Q+++ ++G ++ ++ +AK
Sbjct: 6 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNAC 63
Query: 102 KDSDNIMFKEKRLNIAPAIKK 122
+ L +
Sbjct: 64 DHLSGFNVCNRYLVVLYYNAN 84
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 62.6 bits (152), Expect = 2e-13
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 42 VPKRVFVGGI-TSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRL 100
+ RVF+G + T + ++ +FS+YG + + KG+ F+ + +E A+
Sbjct: 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH-------KGFAFVQYVNERNARAA 66
Query: 101 QKDSDNIMFKEKRLNIAPAIKKQ 123
D M + L+I A + +
Sbjct: 67 VAGEDGRMIAGQVLDINLAAEPK 89
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 61.5 bits (149), Expect = 2e-13
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKR-LQK 102
++FVGG++ T E+++ E F +G V+ +++ +D +G+ FITF EE K+ ++K
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 103 DSDNIMFKEKRLNIA 117
N+ + + +A
Sbjct: 61 KYHNVGLSKCEIKVA 75
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 61.3 bits (148), Expect = 3e-13
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIV--VDRAGISKGYGFITFDSEEEAKRLQKD 103
+F+G + E L + FS +G++ Q + G SKGY FI F S + + +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 104 SDNIMFKEKRLNIAPAIKKQ 123
+ + + ++ A KK
Sbjct: 61 MNGQYLCNRPITVSYAFKKD 80
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 61.6 bits (149), Expect = 3e-13
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQK 102
+++F+GG++ TTE+ L + Q+G + ++ D A S+G+GF+TF S E
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+ + A+ ++
Sbjct: 81 A-RPHSIDGRVVEPKRAVARE 100
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 61.2 bits (148), Expect = 5e-13
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGYGFITFDSEEEAKRLQK 102
+ VF + + +L + FS G V+ V+I+ DR SKG ++ F +
Sbjct: 19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 78
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+ + + ++
Sbjct: 79 -LTGQRLLGVPIIVQASQAEK 98
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 60.7 bits (147), Expect = 7e-13
Identities = 16/74 (21%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGIS-KGYGFITFDSEEEAKRLQK 102
++VG ++ TTE+++ ELFS+ G +K++ + +D+ + G+ F+ + S +A+ +
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 103 DSDNIMFKEKRLNI 116
+ ++ +
Sbjct: 68 YINGTRLDDRIIRT 81
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 60.0 bits (145), Expect = 8e-13
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQ 101
+++F+GG++ TT++ L F Q+G + ++ D S+G+GF+T+ + EE
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
Query: 102 KDSDNIMFKEKRLNIAPAI 120
+ + + A+
Sbjct: 66 N-ARPHKVDGRVVEPKRAV 83
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 60.1 bits (145), Expect = 1e-12
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P+ ++VG ++ TE + +LFSQ G K K++ + + Y F+ F +A
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH-TSNDPYCFVEFYEHRDAAAALA 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+ K + + A
Sbjct: 67 AMNGRKILGKEVKVNWATTPS 87
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 59.3 bits (143), Expect = 2e-12
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
PKR+ V I + +L ++F Q+G + V+I+ + SKG+GF+TF++ +A R ++
Sbjct: 11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-RGSKGFGFVTFENSADADRARE 69
Query: 103 DSDNIMFKEKRLNIAPAIKK 122
+ + +++ + A +
Sbjct: 70 KLHGTVVEGRKIEVNNATAR 89
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 58.8 bits (142), Expect = 3e-12
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 45 RVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
++V + T T+D+L +F +YG IV++ + G +G F+ ++ EEA+
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
Query: 104 SDNIMFK--EKRLNIAPA 119
+N++ + + L++ A
Sbjct: 68 LNNVIPEGGSQPLSVRLA 85
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 58.5 bits (141), Expect = 3e-12
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
+F+ + + L + FS +G + K+V D G SKGYGF+ F+++E A+R +
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIE 66
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+ ++ ++++ + ++
Sbjct: 67 KMNGMLLNDRKVFVGRFKSRK 87
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 58.1 bits (140), Expect = 4e-12
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGYGFITFDSEEEAKRLQKD 103
++F+GG+ + +D++ EL + +G +K +V D A SKGY F + +
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 104 SDNIMFKEKRLNIAPA 119
+ + +K+L + A
Sbjct: 63 LNGMQLGDKKLLVQRA 78
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 58.2 bits (140), Expect = 5e-12
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVV---DRAGISKGYGFITFDSEEEAKRLQ 101
R+F+GGI +E+ E ++ IV ++G+ F+ ++S A +
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 102 K--DSDNIMFKEKRLNIAPAIKKQ 123
+ I ++ + A +
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEI 86
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 57.7 bits (139), Expect = 7e-12
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 47 FVGGITSTTTEDELCELFSQYGIVKQVKIVVDR----AGISKGYGFITFDSEEEAKRLQK 102
F+ + +TTE+ L +FS+ G +K I + +S G+GF+ + E+A++ K
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+L + + +
Sbjct: 62 QLQGHTVDGHKLEVRISERAT 82
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 57.7 bits (139), Expect = 9e-12
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 21 NNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA 80
N ++ VN ++PK V+ GGI S T+ + + FS +G + ++++ ++
Sbjct: 1 NTKQLRFEDVVNQSSPK-----NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK- 54
Query: 81 GISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119
GY F+ F + E A + + +
Sbjct: 55 ----GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 89
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 56.5 bits (136), Expect = 1e-11
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGYGFITFDSEEEAKRLQKD 103
++F+GG++ TT+ +L + FS++G V + +D S+G+GF+ F E ++ D
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV-MD 59
Query: 104 SDNIMFKEKRLNIAPA 119
K ++ A
Sbjct: 60 QKEHKLNGKVIDPKRA 75
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 59.2 bits (142), Expect = 1e-11
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQ 101
K++FVGGI T E L + F QYG ++ ++I+ DR G +G+ F+TFD + ++
Sbjct: 97 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 156
Query: 102 KDSDNIMFKEKRLNIAPAIKKQ 123
+ A+ KQ
Sbjct: 157 IQ-KYHTVNGHNCEVRKALSKQ 177
Score = 55.0 bits (131), Expect = 5e-10
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQ 101
+++F+GG++ TT++ L F Q+G + ++ D S+G+GF+T+ + EE
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
Query: 102 KDSDNIMFKEK 112
+ +
Sbjct: 66 NARPHKVDGRV 76
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 56.2 bits (135), Expect = 3e-11
Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDSEEEAKRLQK 102
+ ++VGG+ + L F +G + ++I +D +G+ F+ F+ E+A
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+ + + + + A +
Sbjct: 66 NMNESELFGRTIRVNLAKPMR 86
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 55.8 bits (134), Expect = 3e-11
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKD 103
+ V + T+ EL LF G + +I+ D G S GY F+ F SE +++R K
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 104 SDNIMFKEKRLNIAPA 119
+ I + KRL ++ A
Sbjct: 64 LNGITVRNKRLKVSYA 79
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 55.8 bits (134), Expect = 3e-11
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
K ++V + +T+E+ + + F+ ++ + Y F+ F + E+A K
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-----KKIRDYAFVHFSNREDAVEAMKA 63
Query: 104 SDNIMFKEKRLNIAPA 119
+ + + + A
Sbjct: 64 LNGKVLDGSPIEVTLA 79
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 56.2 bits (135), Expect = 4e-11
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
+ + ++ TEDEL E+F ++ V G SKG +I F SE +A++ ++
Sbjct: 17 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQD----GKSKGIAYIEFKSEADAEKNLEE 72
Query: 104 SDNIMFKEKRLNIAPAIKKQGFTG 127
+ +++ +K G G
Sbjct: 73 KQGAEIDGRSVSLYYTGEKGGTRG 96
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 55.5 bits (133), Expect = 4e-11
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGYGFITFDSEEEAK 98
TV K++FVGGI T E L + F QYG ++ ++I+ DR +G+ F+TFD +
Sbjct: 1 TV--KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 58
Query: 99 RLQKDSDNIMFKEKRLNIAPAI 120
++ + A+
Sbjct: 59 KIVIQ-KYHTVNGHNCEVRKAL 79
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 55.8 bits (134), Expect = 5e-11
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKD 103
V+VGG+ +E L ELF Q G V + DR G +GYGF+ F SEE+A K
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 70
Query: 104 SDNIMFKEKRLNIAPAIKKQ 123
D I K + + A
Sbjct: 71 MDMIKLYGKPIRVNKASAHN 90
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 55.8 bits (134), Expect = 5e-11
Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
R++VG + ++ ++F +YG ++ + + R + F+ F+ +A+
Sbjct: 14 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--GGPPFAFVEFEDPRDAEDAVY 71
Query: 103 DSDNIMFKEKRLNIAPA 119
D + RL +
Sbjct: 72 GRDGYDYDGYRLRVEFP 88
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 55.4 bits (133), Expect = 5e-11
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS 104
R+FVG + TE+E+ +LF +YG +V I D+ G+GFI ++ A+ + +
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-----GFGFIRLETRTLAEIAKVEL 64
Query: 105 DNIMFKEKRLNIAPAIKKQGFT 126
DN+ + K+L + A T
Sbjct: 65 DNMPLRGKQLRVRFACHSASLT 86
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 55.5 bits (133), Expect = 7e-11
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGYGFITFDSEEEA 97
G+ R+FV ++ T++E++L +LFS YG + ++ +D KG+ F+TF E A
Sbjct: 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 63
Query: 98 KRLQKDSDNIMFKEKRLNIAPAIKKQ 123
+ + D +F+ + L++ P+ K+
Sbjct: 64 VKAYAEVDGQVFQGRMLHVLPSTIKK 89
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 54.4 bits (130), Expect = 1e-10
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
+ V++ G + T D++ E G V +++ KG F+ FDS E AK+ +
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 66
Query: 104 SDNIMFKEKRLNIAPA 119
+KE L I
Sbjct: 67 -PGQKYKETDLLILFK 81
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 54.3 bits (130), Expect = 1e-10
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 45 RVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
++FVGG++ TT +++ F Q+G + + + +G+GF+TF+SE+ +++ +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE- 59
Query: 104 SDNIMFKEKRLNIAPA 119
K + A
Sbjct: 60 IHFHEINNKMVECKKA 75
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 54.7 bits (131), Expect = 1e-10
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 44 KRVFVGGITSTTTEDELC----ELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKR 99
+++ + +DEL +FS++G + + + +G F+ F A
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL--KMRGQAFVIFKEVSSATN 61
Query: 100 LQKDSDNIMFKEKRLNIAPAIKK 122
+ F +K + I A
Sbjct: 62 ALRSMQGFPFYDKPMRIQYAKTD 84
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 53.1 bits (127), Expect = 3e-10
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G+ VFVG T TEDEL E FSQYG V V I + + F+TF ++ A+
Sbjct: 1 GSSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF----RAFAFVTFADDQIAQ 56
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
L ++++ K ++I+ A K
Sbjct: 57 SLCG--EDLIIKGISVHISNAEPKH 79
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 53.1 bits (127), Expect = 4e-10
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDSEEEAKRLQKD 103
++V G+ T T+ EL +LFSQYG + +I+VD+ +S+G GFI FD EA+ K
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
Query: 104 SDNIMFKEKRLNI 116
+ I
Sbjct: 68 LNGQKPSGATEPI 80
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.4 bits (125), Expect = 6e-10
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA------GISKGYGFITFDSEEEA 97
+R++VG I TE+ + + F+ + + K + F+ F S +E
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 98 KRLQKDSDNIMFKEKRLNI 116
+ D I+F+ + L I
Sbjct: 62 TQAMAF-DGIIFQGQSLKI 79
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 52.0 bits (124), Expect = 6e-10
Identities = 14/80 (17%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKR-LQKD 103
++++G ++ T D+L +LF + ++ + GY F+ + + A R ++
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQV-----LLKSGYAFVDYPDQNWAIRAIETL 57
Query: 104 SDNIMFKEKRLNIAPAIKKQ 123
S + K + + ++ K+
Sbjct: 58 SGKVELHGKIMEVDYSVSKK 77
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 52.0 bits (124), Expect = 7e-10
Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRLQK 102
+ V G++ TTE +L E+FS+YG + V IV D ++ S+G+ F+ F++ ++AK ++
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 103 DSDNIMFKEKRLNI 116
++ + +R+ +
Sbjct: 70 RANGMELDGRRIRV 83
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 52.0 bits (124), Expect = 8e-10
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQ 101
P + V + T + DE+ + F Y ++ + G+ G + F+S +EA
Sbjct: 9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 68
Query: 102 KDSDNIMFKEKRLNIAPA 119
D ++ +++ +
Sbjct: 69 IDLNDRPIGSRKVKLVLG 86
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 51.6 bits (123), Expect = 2e-09
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
R+ V + T D L ++FS++G V ++ ++ + + A+ +
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLS 64
Query: 104 SDN--IMFKEKRLNIAPAIKKQ 123
D I L I +
Sbjct: 65 LDGQNIYNACCTLRIDFSKLTS 86
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 51.3 bits (122), Expect = 2e-09
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGYGFITFDSEEEAKRLQK 102
++FVGG+ TT+ L + F +G +++ ++ DR S+GYGF+T A+R K
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
D N + ++ N+ A
Sbjct: 71 D-PNPIIDGRKANVNLAYLGA 90
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 51.3 bits (122), Expect = 2e-09
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD---------RAGISKGYGFITFDSE 94
++V G+ + T D+L + F Q G+VK K G KG ++++
Sbjct: 9 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 68
Query: 95 EEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123
AK + D F+ +L ++ A KK
Sbjct: 69 PTAKAAVEWFDGKDFQGSKLKVSLARKKP 97
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.9 bits (121), Expect = 2e-09
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGYGFITFDSEEEAKRLQ 101
++FVGG++ T E L ++FS+YG + +V +V DR S+G+GF+TF++ ++AK
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 102 KDSDNIMFKEKRLNIAPAIKKQ 123
+ +++ + A K
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSS 86
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 49.7 bits (118), Expect = 6e-09
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDSEEEAKRLQKD 103
+FV I EDE+ E F YG +K + + +DR SKGY + +++ ++A ++
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68
Query: 104 SDNIMFKEKRLNIAPAIKK 122
+ + + + K
Sbjct: 69 LNGAEIMGQTIQVDWCFVK 87
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 48.4 bits (115), Expect = 1e-08
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
V V G + L + F+QYG + + + + I + S+ +A++
Sbjct: 7 VTVFGFPQASASYILLQ-FAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALSKDG 60
Query: 106 NIMFKEKRLNIAPAIKKQ 123
I + + + P I K
Sbjct: 61 RIFGESIMIGVKPCIDKN 78
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 48.6 bits (115), Expect = 1e-08
Identities = 9/76 (11%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 45 RVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
+++ + T+ + +L + +++ R S+ + +I S+E+A+ +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 104 SDNIMFKEKRLNIAPA 119
+ + + L +
Sbjct: 63 LNGLKIEGYTLVTKVS 78
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 48.6 bits (115), Expect = 1e-08
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 45 RVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
+ V + T++E LF G I + G S GYGF+ + ++A++
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 104 SDNIMFKEKRLNIAPA 119
+ + + K + ++ A
Sbjct: 64 LNGLRLQTKTIKVSYA 79
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 48.9 bits (116), Expect = 2e-08
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 45 RVFVGGITSTTTEDELCELF-SQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
+F+ + + +L ++F +V + + +SK +GF+++D+ A+ +
Sbjct: 20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 79
Query: 104 SDNIMFKEKRLNIAPAIKK 122
+ KRL + K
Sbjct: 80 MNGFQIGMKRLKVQLKRSK 98
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.5 bits (115), Expect = 2e-08
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQK 102
+ V ++ T E +L ELF +G + ++ + D+ G SKG+ FI+F E+A R
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 103 DSDNIMFKEKRLNIAPAIKK 122
+ LN+ A
Sbjct: 69 GVSGFGYDHLILNVEWAKPS 88
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 47.9 bits (113), Expect = 3e-08
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI-SKGYGFITFDSEEEAKR--- 99
K VF+ ++ + E+ L E+ Q+G +K V++V+ SKG F F ++E A++
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 100 ---LQKDSDNIMFKEKRLNIAPAIKKQ 123
L+ + + ++L + A+ +
Sbjct: 69 AASLEAEGGGLKLDGRQLKVDLAVTRD 95
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 48.0 bits (114), Expect = 4e-08
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 57 EDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116
++L S++G ++++ + G ++F EEA + D F +++
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRH---PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
Query: 117 APAIKKQGF 125
+
Sbjct: 90 QAWDGTTDY 98
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.8 bits (113), Expect = 4e-08
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQ 101
P F+G + TE+ + E F I KG+G+ F+ +
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74
Query: 102 KDSDNIMFKEKRLNIAPAIKKQ 123
+ KR+ + A + Q
Sbjct: 75 S-LNEESLGNKRIRVDVADQAQ 95
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 46.6 bits (110), Expect = 6e-08
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 35 APKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSE 94
AP+ G ++V G T L FS +G + + + R F+T++
Sbjct: 1 APRKG----NTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR-----NCAFVTYEKM 49
Query: 95 EEAKRLQKDSDNIMFKEKRLNIAPAIKK 122
E A + + + + +L + A K+
Sbjct: 50 ESADQAVAELNGTQVESVQLKVNIARKQ 77
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 46.9 bits (110), Expect = 6e-08
Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P +F+G + + EL S+ + +V R G ++ +G++ F+S E+ ++
Sbjct: 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKA-L 71
Query: 103 DSDNIMFKEKRLNIAPAIKK 122
+ + + + +
Sbjct: 72 ELTGLKVFGNEIKLEKPKGR 91
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 46.7 bits (110), Expect = 1e-07
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDSEEEAKRLQK 102
+ VFVG I TE++L ++FS+ G V ++V DR KGYGF + +E A +
Sbjct: 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68
Query: 103 DSDNIMFKEKRLNIAPAIKKQ 123
+ + F + L + A ++
Sbjct: 69 NLNGREFSGRALRVDNAASEK 89
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 46.6 bits (110), Expect = 1e-07
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
V + E+ E+ +YG V+++ + + G ++ F EE+A++ D +
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 89
Query: 106 NIMFKEKRLNI 116
N F + ++
Sbjct: 90 NRWFNGQPIHA 100
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 45.2 bits (106), Expect = 4e-07
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 13/108 (12%)
Query: 38 YGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEA 97
V VF + + T + LF Y + I F + A
Sbjct: 9 IACVANDDVF----SESETRAKFESLFRTYDKDTTFQYFKSF-----KRVRINFSNPLSA 59
Query: 98 KRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDSLPTVTSPVPPVPTS 145
+ F K + + A + ++ + P +P P+S
Sbjct: 60 ADARLRLHKTEFLGKEMKLYFA-QTLHIGSSHLAPP---NPDKSGPSS 103
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 44.0 bits (103), Expect = 9e-07
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P +++ + + E EL + +G V +I+ D +G S+G GF +S E+ + +
Sbjct: 18 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIG 77
Query: 103 DSDNIMFKEKRLNIAPA 119
+ K AP
Sbjct: 78 HFNGKFIKTPPGVSAPT 94
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 43.6 bits (102), Expect = 1e-06
Identities = 15/86 (17%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 40 TVVPKRVFVGGI-TSTTTEDELCELFSQYGIVKQVKIVVDRAGI--SKGYGFITFDSEEE 96
T+ + + + + T E+ L E F +G ++++ I + + F+ F++++
Sbjct: 1 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 60
Query: 97 AKRLQKDSDNIMFKEKRLNIAPAIKK 122
A+R + + + + ++++ A KK
Sbjct: 61 AERALQ-MNRSLLGNREISVSLADKK 85
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 43.6 bits (102), Expect = 1e-06
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 33 NNAPKYGTVVP----KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYG 87
P + + P K +++ ++ TE +L LF+++ K I G +G
Sbjct: 4 RKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 63
Query: 88 FITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123
FITF ++E A + + K L I K+
Sbjct: 64 FITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 99
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 44.1 bits (103), Expect = 2e-06
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 6 PSEGSSNPSSPSSTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFS 65
P +P ++ Q + V + + V I +T E +L +LF
Sbjct: 5 PLVSQYDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFE 64
Query: 66 QYGIVKQVKIVVDRAG-ISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123
+YG ++ VKIV DR S+GYGF+ F S A++ + KRL +A A
Sbjct: 65 RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 43.3 bits (101), Expect = 2e-06
Identities = 8/79 (10%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKDS 104
+ I + T+ ++ + + + V+ G G + F +E++A++ ++
Sbjct: 11 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-L 69
Query: 105 DNIMFKEKRLNIAPAIKKQ 123
+ + +
Sbjct: 70 HRKKLNGREAFVHVVTLED 88
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 42.5 bits (99), Expect = 3e-06
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 41 VVPKRVFVGGITSTTTEDEL---CELFSQYGIVKQVKIVVDRAG----ISKGYGFITFDS 93
V VFV G++ + E+ E F ++G + +V I + ++T+
Sbjct: 6 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIR 65
Query: 94 EEEAKRLQKDSDNIMFKEKRLNIA 117
E+A R + +N++ + L +
Sbjct: 66 SEDALRAIQCVNNVVVDGRTLKAS 89
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 42.4 bits (99), Expect = 4e-06
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKR 99
V GG+ + + ++L + + G+V + + ++ Y F + + EE+KR
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----PYSFARYRTTEESKR 71
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 41.2 bits (96), Expect = 9e-06
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 38 YGTVVP-KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEE 96
YG P R++VGG+ T+ L F ++G ++ + V + +I ++S +
Sbjct: 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-----SFAYIQYESLDA 65
Query: 97 AKRLQKDSDNIMF--KEKRLNIAPA 119
A+ ++RL + A
Sbjct: 66 AQAACAKMRGFPLGGPDRRLRVDFA 90
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 40.1 bits (93), Expect = 2e-05
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
+ V + + E+ +L Y + +K F+T + E+A+ +
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD------RNKRTAFVTLLNGEQAQNAIQ 58
Query: 103 DSDNIMFKEKRLNIAPAIKK 122
F+ K L +
Sbjct: 59 MFHQYSFRGKDLIVQLQPTD 78
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 40.6 bits (94), Expect = 2e-05
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSE-EEAKRLQKDS 104
F G + T ++L LFS +G +K + V G I F + +EA KD+
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDA 68
Query: 105 DNIMFKEKRLNIAPAIKK 122
+N + + + + +
Sbjct: 69 NNGNLQLRNKEVTWEVLE 86
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 40.2 bits (93), Expect = 2e-05
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 33/123 (26%)
Query: 3 GAHPSEGSSNPSSPSSTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCE 62
G+ S GS + S S V V G+ + E +L E
Sbjct: 1 GSSGSSGSHHKVSVSPV--------------------------VHVRGLCESVVEADLVE 34
Query: 63 LFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK--DSDNIMFKEKRLNIAPAI 120
++G + V ++ + + F++ + AK + ++ +
Sbjct: 35 ALEKFGTICYVMMMPFK-----RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89
Query: 121 KKQ 123
K+
Sbjct: 90 SKR 92
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 39.1 bits (90), Expect = 3e-05
Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
V V + + ++++ + F G + V + D + + I F + A
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDV-ADSLKKNFRFARIEFARYDGALAAITK-T 60
Query: 106 NIMFKEKRLNI 116
+ + + + +
Sbjct: 61 HKVVGQNEIIV 71
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.8 bits (92), Expect = 3e-05
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKDS 104
V + G+ +++E+ + FS IV + G S G F+ F S+E A++
Sbjct: 18 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA-LKK 76
Query: 105 DNIMFKEKRLNIAPAIKKQ 123
+ + I + + +
Sbjct: 77 HKERIGHRYIEIFKSSRAE 95
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 38.2 bits (88), Expect = 6e-05
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 46 VFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS 104
+++ G+ TT+ +L +L YG IV I+ KGYGF+ FDS A++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 105 DNIMFKEKRL 114
+ +
Sbjct: 61 KASGVQAQMA 70
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 37.8 bits (87), Expect = 1e-04
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103
+ + I + +E++L LFS G V + + + I S EEA + D
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALID 67
Query: 104 SDNIMFKEKR 113
N E
Sbjct: 68 LHNHDLGENH 77
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 37.8 bits (87), Expect = 1e-04
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 44 KRVFVGGI-TSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRL-- 100
+ V + +L +L +G++ I+ FI + E+A+
Sbjct: 9 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-----NEAFIEMATTEDAQAAVD 63
Query: 101 QKDSDNIMFKEKRLNIAPAIKKQ 123
+ + K + + + K +
Sbjct: 64 YYTTTPALVFGKPVRVHLSQKYK 86
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 36.4 bits (83), Expect = 3e-04
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
+ + G+ T E+ +L S Y ++ KG F+T + E+A+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTFH 54
Query: 106 NIMFKEKRLNIAPA 119
+E+ L++
Sbjct: 55 QSRLRERELSVQLQ 68
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 37.1 bits (85), Expect = 3e-04
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
RV V G+ + + +L + + G V + D G + + +E+ + +
Sbjct: 15 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG------MGMVEYLRKEDMEYALR 68
Query: 103 DSDNIMFKEKRLNIAPA 119
D+ F+ +
Sbjct: 69 KLDDTKFRSHEGETSYI 85
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 36.7 bits (84), Expect = 4e-04
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 44 KRVFVGGI-TSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
+ V + T L LF YG V++VKI+ ++ K + +A+
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMS 58
Query: 103 DSDNIMFKEKRLNIAPA 119
+ K + I +
Sbjct: 59 HLNGHKLHGKPIRITLS 75
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 35.1 bits (80), Expect = 0.001
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKR-LQKDS 104
V + G+ TE+++ FS ++ I + G G + F + E+A + KD
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPMRVH-IEIGPDGRVTGEADVEFATHEDAVAAMAKDK 76
Query: 105 DNIMFKEKRLNIAPAIKKQG 124
N+ + L + G
Sbjct: 77 ANMQHRYVELFLNSTAGTSG 96
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 33.7 bits (76), Expect = 0.003
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS 104
RV V G+ + + +L + + G V + D G + F +E+ +
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG------TGVVEFVRKEDMTYAVRKL 55
Query: 105 DNIMFKEKRLNIAPAIKKQ 123
DN F+ A K
Sbjct: 56 DNTKFRSHEGETAYIRVKV 74
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 30.3 bits (67), Expect = 0.067
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
+ + + T E+ E FS++G + +V + F EA++ +
Sbjct: 13 ILAKNLPAGTLAAEIQETFSRFGSLGRV-----LLPEGGITAIVEFLEPLEARKAFRHLA 67
Query: 106 NIMFKEKRLNIAPAIKKQ 123
F L + A
Sbjct: 68 YSKFHHVPLYLEWAPIGV 85
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 79
Score = 27.5 bits (61), Expect = 0.44
Identities = 7/36 (19%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 62 ELFSQYGIVK-QVKIVVDRAGISKGYGFITFDSEEE 96
+LF++ G + ++++ +AG++ F S++
Sbjct: 15 QLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKA 50
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus
caldolyticus [TaxId: 1394]}
Length = 66
Score = 25.5 bits (56), Expect = 1.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 83 SKGYGFITFDSEEE 96
KGYGFI + +
Sbjct: 12 EKGYGFIEVEGGSD 25
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping
white clover (Trifolium repens) [TaxId: 3899]}
Length = 490
Score = 27.5 bits (60), Expect = 1.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 81 GISKGYGFITFDSEEEAKRLQKDS 104
G + +G + D + KR K S
Sbjct: 457 GYTVRFGLVFVDFKNNLKRHPKLS 480
>d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces
lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]}
Length = 269
Score = 27.2 bits (59), Expect = 1.6
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 138 PVPPVPTSNM-YYHNGLPYTYHNGMAFFPSNGQ 169
VP +P Y H+ Y +G +
Sbjct: 202 IVPRLPPREFGYSHSSPEYWIKSGTLVPVTRND 234
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga
maritima [TaxId: 2336]}
Length = 66
Score = 25.5 bits (56), Expect = 1.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 83 SKGYGFITFDSEEE 96
KGYGFIT D +
Sbjct: 11 KKGYGFITKDEGGD 24
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 27.1 bits (59), Expect = 2.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 81 GISKGYGFITFDSEEEAKRLQKDS 104
G ++ +G + D E +R K S
Sbjct: 452 GYTERFGIVYVDRENGCERTMKRS 475
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 26.0 bits (57), Expect = 2.2
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 87 GFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117
G + E+ ++L+K +I ++NIA
Sbjct: 73 GIVIGKKGEDVEKLRKVVADIAGVPAQINIA 103
>d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White
mustard (Sinapis alba) [TaxId: 3728]}
Length = 499
Score = 26.7 bits (58), Expect = 2.9
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 81 GISKGYGFITFDSEEEAKRLQKDS 104
G + +G D R K S
Sbjct: 466 GFTVRFGLSYIDWNNVTDRDLKKS 489
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 25.4 bits (55), Expect = 3.2
Identities = 13/60 (21%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 145 SNMYYHNGL-----PYTYHNGMAFFPSNGQSMVPTSPPTVPTQVKILLPPGVLLCG-ICL 198
+N+ Y N + P PP V K V G ICL
Sbjct: 25 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICL 84
>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 24.8 bits (54), Expect = 3.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 83 SKGYGFITFDSEEE 96
GYGFI + +E
Sbjct: 19 RNGYGFINRNDTKE 32
>d2ex0a1 c.87.1.9 (A:26-412)
Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella
multocida [TaxId: 747]}
Length = 387
Score = 26.0 bits (57), Expect = 4.2
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 108 MFKEKRLNIAPAIKKQGFTGTYDSLPTVTSPVPPVPTSNMY-YHNGLPYTYH 158
+ KE+ +I+ A KQ L T PT Y + + P YH
Sbjct: 124 LEKEENKDIS-AEIKQAEKQLSHYLLTGKIKFDN-PTIARYVWQSAFPVKYH 173
>d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum
anthropi [TaxId: 529]}
Length = 362
Score = 26.2 bits (56), Expect = 4.7
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 139 VPPVPTSNMYYHNGLPYTYHNGMAFFPSNGQSMV 172
+ +S + H G + + M G +++
Sbjct: 295 LMRYGSSELKGHLGQIPGHTSIMGRDEETGAALM 328
>d1r17a2 b.2.3.4 (A:425-596) Fibrinogen-binding adhesin SdrG
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 172
Score = 25.2 bits (55), Expect = 5.7
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 125 FTGTYDS----LPTVTSPVPPVPTSNMYYHNGLPYTYHNGMAFFPSNGQ 169
YD T+ V T N Y +Y N +AF S+GQ
Sbjct: 117 VISKYDPNKDDYTTIQQTVTMQTTINEYTGEFRTASYDNTIAFSTSSGQ 165
>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 24.1 bits (52), Expect = 7.7
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 9/31 (29%)
Query: 66 QYGIVKQVKIVVDRAGISKGYGFITFDSEEE 96
+ G+++++ YGFI +
Sbjct: 19 ETGVIEKLL---------TSYGFIQCSERQA 40
>d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 190
Score = 25.1 bits (54), Expect = 8.3
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 149 YHNGLPYTYHNGMAFFPSNGQSMVP 173
HN G+ F SNG
Sbjct: 116 SHNPGGPNGDFGIKFNISNGGPAPE 140
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 24.3 bits (52), Expect = 9.0
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 7/90 (7%)
Query: 139 VPPVPTSNMYYHNGL-----PYTYHNGMAFFPSNGQSMVPTSPPTVPTQVKILLPPGVLL 193
+ +++Y L Y G+ P PP + +I P V
Sbjct: 21 AGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI-WHPNVDK 79
Query: 194 CG-ICLIFLITLALAPTIKRPSLKPLNSSQ 222
G +C+ L +
Sbjct: 80 NGDVCISILHEPGEDKYGYEKPEERWLPIH 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 888,512
Number of extensions: 42045
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 102
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)