Query psy15516
Match_columns 107
No_of_seqs 169 out of 324
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 23:18:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2514|consensus 99.6 2.5E-15 5.5E-20 130.6 8.2 69 34-102 750-818 (861)
2 KOG2514|consensus 99.2 2.9E-11 6.3E-16 105.6 6.8 51 2-52 753-812 (861)
3 PF04547 Anoctamin: Calcium-ac 99.2 1E-10 2.3E-15 95.5 7.6 81 2-85 371-452 (452)
4 KOG2513|consensus 98.8 9.9E-09 2.1E-13 87.9 8.0 88 2-93 530-617 (647)
5 PF04547 Anoctamin: Calcium-ac 98.0 6.1E-06 1.3E-10 67.6 4.6 34 8-41 419-452 (452)
6 KOG2513|consensus 96.7 0.0038 8.3E-08 54.2 5.6 42 8-49 576-617 (647)
7 cd07223 Pat_PNPLA5-mammals Pat 76.0 9.9 0.00021 31.9 6.2 26 51-77 349-374 (405)
8 cd07223 Pat_PNPLA5-mammals Pat 64.9 7.4 0.00016 32.7 3.2 23 9-32 351-373 (405)
9 PF04988 AKAP95: A-kinase anch 63.1 17 0.00037 27.0 4.5 45 60-104 92-152 (165)
10 KOG0569|consensus 38.0 62 0.0013 27.6 4.5 34 2-35 179-214 (485)
11 PF10911 DUF2717: Protein of u 36.0 26 0.00056 23.0 1.6 13 69-81 15-27 (77)
12 PHA00438 hypothetical protein 30.7 35 0.00077 22.5 1.5 10 69-78 15-24 (81)
13 PRK08561 rps15p 30S ribosomal 27.1 70 0.0015 23.4 2.7 23 68-90 80-102 (151)
14 TIGR01294 P_lamban phospholamb 25.7 92 0.002 18.6 2.6 24 82-105 3-32 (52)
15 PF04746 DUF575: Protein of un 23.9 65 0.0014 22.0 1.9 46 52-97 24-75 (101)
16 COG0804 UreC Urea amidohydrola 23.6 56 0.0012 28.2 1.9 38 54-93 311-351 (568)
17 KOG2910|consensus 23.5 1.3E+02 0.0028 23.2 3.6 16 60-75 41-56 (209)
18 COG5117 NOC3 Protein involved 23.3 1.4E+02 0.0031 26.2 4.3 36 68-105 123-162 (657)
19 KOG3850|consensus 20.9 1.9E+02 0.004 24.7 4.4 30 74-103 284-313 (455)
20 cd08818 CARD_MDA5_1 Caspase ac 20.6 1.2E+02 0.0026 20.2 2.7 22 63-85 23-44 (88)
No 1
>KOG2514|consensus
Probab=99.60 E-value=2.5e-15 Score=130.64 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q psy15516 34 FKIKRERYLAKQALQDSETMMNHVVFGICRMIDILVPDIPEGLEFKIKRERYLAKQALQDSETMMNILE 102 (107)
Q Consensus 34 ~~ikrE~ylt~~Allafvivfehvv~~~~~~~~~~IPD~P~~l~~~ikre~yl~~~~l~~~~~~~~~~~ 102 (107)
-......|...+|+++|+|+|||+|++++.+++|+|||+|+++++||+||+||++++++++|.+++..+
T Consensus 750 Y~~s~~~whvlAarLaFiiVfehlV~~ik~~i~~~IPDvPk~l~dqi~REkyL~~e~~~e~eler~qk~ 818 (861)
T KOG2514|consen 750 YGLSIQYWHVLAARLAFVIVFENLVFEIKELVSWTIPDVPKDLKDQIRREKYLAQELFYETEIEKLQKL 818 (861)
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666899999999999999999999999999999999999999999999999999999998887665
No 2
>KOG2514|consensus
Probab=99.20 E-value=2.9e-11 Score=105.64 Aligned_cols=51 Identities=31% Similarity=0.729 Sum_probs=46.8
Q ss_pred chhHHHH---------HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhhhHh
Q psy15516 2 TLLFWNV---------QKKHVVFGICRMIDILVPDIPEGLEFKIKRERYLAKQALQDSET 52 (107)
Q Consensus 2 ~~~~W~v---------vFEhvv~~~~~~i~~lIPdvP~~v~~~ikrE~ylt~~Allafvi 52 (107)
|++|||| +|||+|+.++.+++|+|||+|.++++||+||+|++++...+.++
T Consensus 753 s~~~whvlAarLaFiiVfehlV~~ik~~i~~~IPDvPk~l~dqi~REkyL~~e~~~e~el 812 (861)
T KOG2514|consen 753 SIQYWHVLAARLAFVIVFENLVFEIKELVSWTIPDVPKDLKDQIRREKYLAQELFYETEI 812 (861)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 7899998 89999999999999999999999999999999998877766553
No 3
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.15 E-value=1e-10 Score=95.47 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=69.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHHHcCCCchhHHHHH
Q psy15516 2 TLLFWNVQKKHVVFGICRMIDILVPDIP-EGLEFKIKRERYLAKQALQDSETMMNHVVFGICRMIDILVPDIPEGLEFKI 80 (107)
Q Consensus 2 ~~~~W~vvFEhvv~~~~~~i~~lIPdvP-~~v~~~ikrE~ylt~~Allafvivfehvv~~~~~~~~~~IPD~P~~l~~~i 80 (107)
++|-|.-++|-+..+...+||.++.-.. ..+ +..-.+ .+...+..+.+++||++++++.+++|+|||+|+++++++
T Consensus 371 ~IG~W~~il~~i~~lav~tN~~li~~~s~~~~-~~~~~~--~~~~~~~~~~l~~eh~~~~~~~~i~~~ipd~P~~v~~~~ 447 (452)
T PF04547_consen 371 SIGIWNNILEIISWLAVITNAALIAFTSDGQL-QGYFPD--SSLAQRLLFFLVFEHVVFFLKYLISWLIPDVPKWVRIQI 447 (452)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhcchh-hhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6899999999999999999999998775 223 222212 455788999999999999999999999999999999999
Q ss_pred HHHHH
Q psy15516 81 KRERY 85 (107)
Q Consensus 81 kre~y 85 (107)
+||+|
T Consensus 448 ~r~~Y 452 (452)
T PF04547_consen 448 QREEY 452 (452)
T ss_pred HHhcC
Confidence 99998
No 4
>KOG2513|consensus
Probab=98.85 E-value=9.9e-09 Score=87.86 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHHHcCCCchhHHHHHH
Q psy15516 2 TLLFWNVQKKHVVFGICRMIDILVPDIPEGLEFKIKRERYLAKQALQDSETMMNHVVFGICRMIDILVPDIPEGLEFKIK 81 (107)
Q Consensus 2 ~~~~W~vvFEhvv~~~~~~i~~lIPdvP~~v~~~ikrE~ylt~~Allafvivfehvv~~~~~~~~~~IPD~P~~l~~~ik 81 (107)
|+|-|+-++|-++.+.+.+||.++...|+ + ++.-. +.+.+.....++++||+.+++|++++++|||.|.+++..+-
T Consensus 530 ~IG~Wq~~l~~lSvls~vtncaLi~~~~~-~-~~~~~--~~s~~~~il~~V~~EH~~l~Lkflis~vipe~p~wva~~~~ 605 (647)
T KOG2513|consen 530 NIGAWQNALELLSVLSCVTNCALIGMYPQ-V-NKLWP--LLSPENAILIIVILEHVLLLLKFLISSVIPESPRWVAAGIA 605 (647)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhcccc-c-cccCc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 79999999999999999999999999997 4 43332 23666777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy15516 82 RERYLAKQALQD 93 (107)
Q Consensus 82 re~yl~~~~l~~ 93 (107)
|-++.+.|+..+
T Consensus 606 k~~~~~~e~~~k 617 (647)
T KOG2513|consen 606 KAEFQAREAFKK 617 (647)
T ss_pred HHHHHHHHhhhH
Confidence 999999999985
No 5
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=98.03 E-value=6.1e-06 Score=67.57 Aligned_cols=34 Identities=38% Similarity=0.691 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q psy15516 8 VQKKHVVFGICRMIDILVPDIPEGLEFKIKRERY 41 (107)
Q Consensus 8 vvFEhvv~~~~~~i~~lIPdvP~~v~~~ikrE~y 41 (107)
+++||++++++.++.|+|||+|++++++++||+|
T Consensus 419 l~~eh~~~~~~~~i~~~ipd~P~~v~~~~~r~~Y 452 (452)
T PF04547_consen 419 LVFEHVVFFLKYLISWLIPDVPKWVRIQIQREEY 452 (452)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC
Confidence 4999999999999999999999999999999986
No 6
>KOG2513|consensus
Probab=96.65 E-value=0.0038 Score=54.21 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhh
Q psy15516 8 VQKKHVVFGICRMIDILVPDIPEGLEFKIKRERYLAKQALQD 49 (107)
Q Consensus 8 vvFEhvv~~~~~~i~~lIPdvP~~v~~~ikrE~ylt~~Alla 49 (107)
|++||+.++++++++++|||.|++|...+.|-++.+.++.-.
T Consensus 576 V~~EH~~l~Lkflis~vipe~p~wva~~~~k~~~~~~e~~~k 617 (647)
T KOG2513|consen 576 VILEHVLLLLKFLISSVIPESPRWVAAGIAKAEFQAREAFKK 617 (647)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhH
Confidence 489999999999999999999999999999999998887654
No 7
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=75.96 E-value=9.9 Score=31.91 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.4
Q ss_pred HhhhhHHHHHHHHHHHHHcCCCchhHH
Q psy15516 51 ETMMNHVVFGICRMIDILVPDIPEGLE 77 (107)
Q Consensus 51 vivfehvv~~~~~~~~~~IPD~P~~l~ 77 (107)
-.=+|...+....++.| +||+|.++.
T Consensus 349 tlp~e~~~~~~~r~~~w-lpd~p~d~~ 374 (405)
T cd07223 349 TLPFEYIYFRSRRLVAW-LPDVPADLW 374 (405)
T ss_pred CchHHHHHHHHHHHHHH-cCCChHHHH
Confidence 44589999999999999 599999985
No 8
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=64.88 E-value=7.4 Score=32.66 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhH
Q psy15516 9 QKKHVVFGICRMIDILVPDIPEGL 32 (107)
Q Consensus 9 vFEhvv~~~~~~i~~lIPdvP~~v 32 (107)
=||...+....++.| +||+|+++
T Consensus 351 p~e~~~~~~~r~~~w-lpd~p~d~ 373 (405)
T cd07223 351 PFEYIYFRSRRLVAW-LPDVPADL 373 (405)
T ss_pred hHHHHHHHHHHHHHH-cCCChHHH
Confidence 489999999999999 59999987
No 9
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=63.09 E-value=17 Score=27.02 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCchhHH----------------HHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy15516 60 GICRMIDILVPDIPEGLE----------------FKIKRERYLAKQALQDSETMMNILENV 104 (107)
Q Consensus 60 ~~~~~~~~~IPD~P~~l~----------------~~ikre~yl~~~~l~~~~~~~~~~~~~ 104 (107)
+=...++.+||..|..|+ +|.||+-+.+-+.+.++....+++|+.
T Consensus 92 ~hCsACd~~IP~~~~~vQ~Hl~S~~H~~Nrr~~~eq~Kr~sl~vA~Silnnk~Ik~~le~y 152 (165)
T PF04988_consen 92 AHCSACDVFIPMQHSSVQKHLKSQDHNKNRRAMMEQSKRSSLSVARSILNNKHIKKRLEKY 152 (165)
T ss_pred hhhhHhhhhccCcHHHHHHHhccHHHHhhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 345588999999988773 567778888878888877788888765
No 10
>KOG0569|consensus
Probab=38.05 E-value=62 Score=27.64 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=27.4
Q ss_pred chhHHHH--HHHHHHHHHHHHHHHHcCCCChhHHHH
Q psy15516 2 TLLFWNV--QKKHVVFGICRMIDILVPDIPEGLEFK 35 (107)
Q Consensus 2 ~~~~W~v--vFEhvv~~~~~~i~~lIPdvP~~v~~~ 35 (107)
|..-|.+ +++-+..++....-+..|++|+++-.+
T Consensus 179 t~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~ 214 (485)
T KOG0569|consen 179 TEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK 214 (485)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 4455766 788888888999999999999998554
No 11
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=35.98 E-value=26 Score=22.96 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.1
Q ss_pred cCCCchhHHHHHH
Q psy15516 69 VPDIPEGLEFKIK 81 (107)
Q Consensus 69 IPD~P~~l~~~ik 81 (107)
|||+|+.+++-.+
T Consensus 15 iP~ipra~aeyLq 27 (77)
T PF10911_consen 15 IPDIPRAAAEYLQ 27 (77)
T ss_pred cCCccHHHHHHHH
Confidence 8999999865443
No 12
>PHA00438 hypothetical protein
Probab=30.70 E-value=35 Score=22.50 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=8.6
Q ss_pred cCCCchhHHH
Q psy15516 69 VPDIPEGLEF 78 (107)
Q Consensus 69 IPD~P~~l~~ 78 (107)
|||+|++..+
T Consensus 15 iPdvpraa~e 24 (81)
T PHA00438 15 IPDVPRAAAE 24 (81)
T ss_pred cccccHHHHH
Confidence 8999999864
No 13
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=27.11 E-value=70 Score=23.45 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=19.2
Q ss_pred HcCCCchhHHHHHHHHHHHHHHH
Q psy15516 68 LVPDIPEGLEFKIKRERYLAKQA 90 (107)
Q Consensus 68 ~IPD~P~~l~~~ikre~yl~~~~ 90 (107)
+-|++|+++.+-++|-..++.-.
T Consensus 80 l~p~iPEDL~~L~~ri~~L~~HL 102 (151)
T PRK08561 80 LAPEIPEDLRNLIKKAVNLRKHL 102 (151)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHH
Confidence 57999999999999988876544
No 14
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=25.72 E-value=92 Score=18.61 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhH------HHHHHHHhhhh
Q psy15516 82 RERYLAKQALQDS------ETMMNILENVF 105 (107)
Q Consensus 82 re~yl~~~~l~~~------~~~~~~~~~~~ 105 (107)
|-+|+++.++.+. ...++.+|++|
T Consensus 3 kvq~~trsairras~ie~~~qar~~lq~lf 32 (52)
T TIGR01294 3 KVQYLTRSAIRRASTIEMPQQARQNLQNLF 32 (52)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5578888887654 34677888876
No 15
>PF04746 DUF575: Protein of unknown function (DUF575); InterPro: IPR006835 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=23.91 E-value=65 Score=22.02 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHHHHHHH------cCCCchhHHHHHHHHHHHHHHHHHhHHHH
Q psy15516 52 TMMNHVVFGICRMIDIL------VPDIPEGLEFKIKRERYLAKQALQDSETM 97 (107)
Q Consensus 52 ivfehvv~~~~~~~~~~------IPD~P~~l~~~ikre~yl~~~~l~~~~~~ 97 (107)
=+.-|+++.+.++++|+ -|.-|.++..-+|-|+-.-.+-+..-+..
T Consensus 24 PivGhiv~GieWLvS~c~~~~v~~p~f~SDV~~ivKvEk~~G~dhisrve~~ 75 (101)
T PF04746_consen 24 PIVGHIVMGIEWLVSRCFERFVTKPMFTSDVASIVKVEKTRGRDHISRVEEY 75 (101)
T ss_pred cccceEEeehHHHHHHhhhhccCCCCCchHHHHHHHHHHhhCCCchHHHHHH
Confidence 35679999999999994 68899999888888877666655544433
No 16
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=23.63 E-value=56 Score=28.21 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHcCCCchhH---HHHHHHHHHHHHHHHHh
Q psy15516 54 MNHVVFGICRMIDILVPDIPEGL---EFKIKRERYLAKQALQD 93 (107)
Q Consensus 54 fehvv~~~~~~~~~~IPD~P~~l---~~~ikre~yl~~~~l~~ 93 (107)
=||+=++. ++--+=|++|+++ ..|||+|-.-+.+.|++
T Consensus 311 ~EhlDMlM--VcHhL~p~ipeDvaFAeSRIR~eTIAAEdiLhD 351 (568)
T COG0804 311 DEHLDMLM--VCHHLDPRIPEDVAFAESRIRPETIAAEDILHD 351 (568)
T ss_pred HHhhhhhh--hhccCCCCCcchhhhhhhccchhhhhHHHHHhh
Confidence 46776665 5677889999999 58999999988888875
No 17
>KOG2910|consensus
Probab=23.45 E-value=1.3e+02 Score=23.17 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCCCchh
Q psy15516 60 GICRMIDILVPDIPEG 75 (107)
Q Consensus 60 ~~~~~~~~~IPD~P~~ 75 (107)
.=+.+..-+|-|-+++
T Consensus 41 ~Er~~Ar~lird~rKd 56 (209)
T KOG2910|consen 41 AERQLARDLIRDGRKD 56 (209)
T ss_pred HHHHHHHHHHHhChHH
Confidence 3344555555555553
No 18
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=23.34 E-value=1.4e+02 Score=26.17 Aligned_cols=36 Identities=25% Similarity=0.665 Sum_probs=28.2
Q ss_pred HcCCCchhHHHHHHHHH----HHHHHHHHhHHHHHHHHhhhh
Q psy15516 68 LVPDIPEGLEFKIKRER----YLAKQALQDSETMMNILENVF 105 (107)
Q Consensus 68 ~IPD~P~~l~~~ikre~----yl~~~~l~~~~~~~~~~~~~~ 105 (107)
+-||+| ++.||+.++ -+.++.+.+-+.-.+.++++|
T Consensus 123 ~~~e~P--~kqqi~~~Ke~ia~~~tki~EePeeNl~~~~~vf 162 (657)
T COG5117 123 IAPEIP--VKQQIDSEKERIASICTKIIEEPEENLGMMEEVF 162 (657)
T ss_pred cCCCCC--hHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 358999 778887665 567788888888888888876
No 19
>KOG3850|consensus
Probab=20.93 E-value=1.9e+02 Score=24.69 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q psy15516 74 EGLEFKIKRERYLAKQALQDSETMMNILEN 103 (107)
Q Consensus 74 ~~l~~~ikre~yl~~~~l~~~~~~~~~~~~ 103 (107)
.+++++++||--+..|.|.+++..-.++|.
T Consensus 284 e~Lke~~krdy~fi~etLQEERyR~erLEE 313 (455)
T KOG3850|consen 284 ERLKEQIKRDYKFIAETLQEERYRYERLEE 313 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999888777764
No 20
>cd08818 CARD_MDA5_1 Caspase activation and recruitment domain found in MDA5, first repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-
Probab=20.57 E-value=1.2e+02 Score=20.24 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHHHHHcCCCchhHHHHHHHHHH
Q psy15516 63 RMIDILVPDIPEGLEFKIKRERY 85 (107)
Q Consensus 63 ~~~~~~IPD~P~~l~~~ikre~y 85 (107)
-+++|+ |=.|.+.+++|++++-
T Consensus 23 ~VL~~l-~~L~~e~ke~I~a~~~ 44 (88)
T cd08818 23 PVLDYL-TFLEAEVKERIRAAAA 44 (88)
T ss_pred HHhhhc-ccCCHHHHHHHHHHHH
Confidence 356777 7889999999998876
Done!