Query psy15516
Match_columns 107
No_of_seqs 169 out of 324
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:19:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kwh_A RAla-binding protein 1; 66.1 5.5 0.00019 23.8 2.9 21 70-90 2-22 (56)
2 1dip_A Delta-sleep-inducing pe 25.9 55 0.0019 20.5 2.7 40 61-100 5-44 (78)
3 3j20_Q 30S ribosomal protein S 18.8 83 0.0028 22.2 2.8 25 66-90 85-109 (158)
4 3u5c_N S27A, YS15, 40S ribosom 16.8 64 0.0022 22.6 1.8 21 68-88 80-100 (151)
5 3he5_B Synzip2; heterodimeric 16.0 1.7E+02 0.0058 16.5 3.9 25 79-103 21-45 (52)
6 2xzm_O RPS13E; ribosome, trans 14.9 75 0.0026 22.3 1.8 18 67-84 81-98 (153)
7 2kvr_A Ubiquitin carboxyl-term 14.2 81 0.0028 21.0 1.7 15 71-85 1-15 (130)
8 2y6x_A PSB27, photosystem II 1 12.1 2.8E+02 0.0095 18.3 3.9 31 65-95 81-111 (113)
9 2q0o_C Probable transcriptiona 11.3 3.6E+02 0.012 17.7 6.1 44 26-76 60-105 (107)
10 4gc0_A D-xylose-proton symport 11.0 2E+02 0.0069 21.2 3.3 30 10-39 205-234 (491)
No 1
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=66.12 E-value=5.5 Score=23.76 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.3
Q ss_pred CCCchhHHHHHHHHHHHHHHH
Q psy15516 70 PDIPEGLEFKIKRERYLAKQA 90 (107)
Q Consensus 70 PD~P~~l~~~ikre~yl~~~~ 90 (107)
||-|.+++..+++.+.+..++
T Consensus 2 p~~~e~I~~El~kQe~lL~~L 22 (56)
T 2kwh_A 2 SETQAGIKEEIRRQEFLLNSL 22 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876
No 2
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=25.90 E-value=55 Score=20.49 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy15516 61 ICRMIDILVPDIPEGLEFKIKRERYLAKQALQDSETMMNI 100 (107)
Q Consensus 61 ~~~~~~~~IPD~P~~l~~~ikre~yl~~~~l~~~~~~~~~ 100 (107)
+|..+-+++-+-++-++++|+.......+.-.++..+++.
T Consensus 5 VKtHLm~AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 5 VKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TTTGGGGTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667888999999999999888888887777777664
No 3
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=18.83 E-value=83 Score=22.17 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=20.7
Q ss_pred HHHcCCCchhHHHHHHHHHHHHHHH
Q psy15516 66 DILVPDIPEGLEFKIKRERYLAKQA 90 (107)
Q Consensus 66 ~~~IPD~P~~l~~~ikre~yl~~~~ 90 (107)
.=+-|++|+++..-++|-..++.-.
T Consensus 85 ~gl~p~iPEDL~~Lt~RI~~Lt~HL 109 (158)
T 3j20_Q 85 HGLAPEIPEDLMFLIRRAVNLRKHL 109 (158)
T ss_dssp HTCSCSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4457999999999999998887544
No 4
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=16.75 E-value=64 Score=22.65 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=16.3
Q ss_pred HcCCCchhHHHHHHHHHHHHH
Q psy15516 68 LVPDIPEGLEFKIKRERYLAK 88 (107)
Q Consensus 68 ~IPD~P~~l~~~ikre~yl~~ 88 (107)
+-|++|++|.+-|||---+.+
T Consensus 80 lapeiPEDL~~LikKAv~lrk 100 (151)
T 3u5c_N 80 LAPEIPEDLYYLIKKAVSVRK 100 (151)
T ss_dssp CCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 479999999999987554433
No 5
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=15.99 E-value=1.7e+02 Score=16.45 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhh
Q psy15516 79 KIKRERYLAKQALQDSETMMNILEN 103 (107)
Q Consensus 79 ~ikre~yl~~~~l~~~~~~~~~~~~ 103 (107)
+..|++.-..+++..-+...++++|
T Consensus 21 qlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4445555555566666667777776
No 6
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=14.93 E-value=75 Score=22.32 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=14.5
Q ss_pred HHcCCCchhHHHHHHHHH
Q psy15516 67 ILVPDIPEGLEFKIKRER 84 (107)
Q Consensus 67 ~~IPD~P~~l~~~ikre~ 84 (107)
-+-|++|+||-+-|||--
T Consensus 81 glapeiPEDL~~LikKAv 98 (153)
T 2xzm_O 81 GCAPQLPEDLYFLIKKAL 98 (153)
T ss_dssp TCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHH
Confidence 347999999999888743
No 7
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=14.20 E-value=81 Score=20.99 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=11.0
Q ss_pred CCchhHHHHHHHHHH
Q psy15516 71 DIPEGLEFKIKRERY 85 (107)
Q Consensus 71 D~P~~l~~~ikre~y 85 (107)
|+|..|..++..|+=
T Consensus 1 ~iP~hL~~rl~eE~~ 15 (130)
T 2kvr_A 1 GSPQQLVERLQEEKR 15 (130)
T ss_dssp --CTHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHH
Confidence 689999999988754
No 8
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=12.07 E-value=2.8e+02 Score=18.26 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHcCCCchhHHHHHHHHHHHHHHHHHhHH
Q psy15516 65 IDILVPDIPEGLEFKIKRERYLAKQALQDSE 95 (107)
Q Consensus 65 ~~~~IPD~P~~l~~~ikre~yl~~~~l~~~~ 95 (107)
.++=---+|+.+++|+..|=-.+..+|.+..
T Consensus 81 ~s~g~~PlPek~k~Rl~~el~~AE~al~Rg~ 111 (113)
T 2y6x_A 81 SSYPNRPLPEKLKARLEQEFKQVELALDREA 111 (113)
T ss_dssp HHCTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333456999999999988777777776543
No 9
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=11.27 E-value=3.6e+02 Score=17.72 Aligned_cols=44 Identities=25% Similarity=0.476 Sum_probs=23.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHHH--cCCCchhH
Q psy15516 26 PDIPEGLEFKIKRERYLAKQALQDSETMMNHVVFGICRMIDIL--VPDIPEGL 76 (107)
Q Consensus 26 PdvP~~v~~~ikrE~ylt~~Allafvivfehvv~~~~~~~~~~--IPD~P~~l 76 (107)
|.+|..+.... +.+|+..+....-- -..++.+++.+ ||++|-+-
T Consensus 60 ~~~~~avl~~~-q~eYi~a~~e~~AQ------q~~lstLid~LGyvPkV~~d~ 105 (107)
T 2q0o_C 60 PSISGPVLQTL-QDEYVARQKRSEAQ------QEELSDILDALGFVPDVPFDD 105 (107)
T ss_dssp TTSCHHHHHHH-HHHHHHHHHHHHHH------HHHHHHHHHHHCSCCCCC---
T ss_pred CCCCchhhHHH-HHHHHHHHHHHHHH------HHHHHHHHHHhcCCCCCCCCC
Confidence 55777664443 34455433332211 24556677777 99999653
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=11.02 E-value=2e+02 Score=21.22 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q psy15516 10 KKHVVFGICRMIDILVPDIPEGLEFKIKRE 39 (107)
Q Consensus 10 FEhvv~~~~~~i~~lIPdvP~~v~~~ikrE 39 (107)
..-+..++.....+.+|+.|+++..+-+.|
T Consensus 205 ~~~~~~~~~~~~~~~~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 205 SECIPALLFLMLLYTVPESPRWLMSRGKQE 234 (491)
T ss_dssp TTHHHHHHHHHHGGGSCCCHHHHHHTTCHH
T ss_pred hhhhhhhhhhhhhhcCCCChHHHHHcCchh
Confidence 344445556677788999999875443333
Done!