Query psy15516
Match_columns 107
No_of_seqs 169 out of 324
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 23:19:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15516.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15516hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d4ubpc2 c.1.9.2 (C:132-434,C:4 26.5 24 0.0017 26.5 3.3 38 54-93 182-222 (390)
2 d1ejxc2 c.1.9.2 (C:1130-1422,C 23.8 18 0.0013 27.2 2.1 38 54-93 181-221 (385)
3 d1e9yb2 c.1.9.2 (B:132-431,B:4 22.4 23 0.0016 26.6 2.4 38 54-93 181-221 (389)
4 d1x9ya2 d.17.1.4 (A:41-211) St 16.9 68 0.005 21.0 3.7 24 27-51 11-34 (171)
5 d1n08a_ b.43.5.1 (A:) Riboflav 10.7 1.2E+02 0.0085 19.2 3.4 26 72-97 120-145 (154)
6 d1mrza1 b.43.5.1 (A:159-288) R 9.5 1.2E+02 0.0089 18.4 3.1 23 72-94 104-126 (130)
7 d1nb9a_ b.43.5.1 (A:) Riboflav 9.3 94 0.0069 19.6 2.5 27 71-97 109-135 (147)
8 d2gz4a1 a.211.1.1 (A:6-205) Hy 7.1 88 0.0064 20.9 1.6 50 23-84 85-135 (200)
9 d2csga1 b.82.2.12 (A:3-419) Hy 7.1 2.1E+02 0.016 20.9 4.0 34 71-104 7-40 (417)
10 d1l0oc_ a.4.13.2 (C:) SigmaF { 7.0 1.8E+02 0.013 14.8 3.1 21 72-92 6-26 (57)
No 1
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Probab=26.48 E-value=24 Score=26.50 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHcCCCchhH---HHHHHHHHHHHHHHHHh
Q psy15516 54 MNHVVFGICRMIDILVPDIPEGL---EFKIKRERYLAKQALQD 93 (107)
Q Consensus 54 fehvv~~~~~~~~~~IPD~P~~l---~~~ikre~yl~~~~l~~ 93 (107)
=||+=+++ ++--+=|++|+++ +.|||+|-.-+-+.|++
T Consensus 182 ~EhldM~M--vcHhL~~~ipeDvafAesRiR~eTiaAEdvLHD 222 (390)
T d4ubpc2 182 DEHLDMLM--VCHHLKQNIPEDVAFADSRIRPETIAAEDILHD 222 (390)
T ss_dssp HHHHHHHH--HHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hhhcCeEE--eeccCCCCChhhHHHHhhcccchhhhhHHHhhh
Confidence 46777765 6677889999999 58999998888888765
No 2
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=23.81 E-value=18 Score=27.18 Aligned_cols=38 Identities=34% Similarity=0.486 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHcCCCchhH---HHHHHHHHHHHHHHHHh
Q psy15516 54 MNHVVFGICRMIDILVPDIPEGL---EFKIKRERYLAKQALQD 93 (107)
Q Consensus 54 fehvv~~~~~~~~~~IPD~P~~l---~~~ikre~yl~~~~l~~ 93 (107)
=||+=+++ .+--+=|++|++| +.|||+|-.-+-+.|++
T Consensus 181 ~EhldMlm--vcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD 221 (385)
T d1ejxc2 181 DEHLDMLM--VCHHLDPDIAEDVAFAESRIRRETIAAEDVLHD 221 (385)
T ss_dssp HHHHHHHH--HC----------CHHHHHHSCHHHHHHHHHHHH
T ss_pred HhhCCcee--ecccCCCCChhHHhhhhccccchhhhhHHHhhc
Confidence 46777665 5677789999998 58999998888888875
No 3
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]}
Probab=22.40 E-value=23 Score=26.63 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHcCCCchhH---HHHHHHHHHHHHHHHHh
Q psy15516 54 MNHVVFGICRMIDILVPDIPEGL---EFKIKRERYLAKQALQD 93 (107)
Q Consensus 54 fehvv~~~~~~~~~~IPD~P~~l---~~~ikre~yl~~~~l~~ 93 (107)
=||+=+++ .+--+=|++|+++ +.|||+|-.-+-+.|++
T Consensus 181 ~EhldMlm--vcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD 221 (389)
T d1e9yb2 181 AEHMDMLM--VCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHD 221 (389)
T ss_dssp HHHHHHHH--HTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHhhchhh--hhccCCCCCchhHHHHhhcccchhhhhHHHhhc
Confidence 46776665 5667789999999 58999988888888775
No 4
>d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain {Staphylococcus aureus [TaxId: 1280]}
Probab=16.91 E-value=68 Score=21.05 Aligned_cols=24 Identities=8% Similarity=0.325 Sum_probs=19.7
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhH
Q psy15516 27 DIPEGLEFKIKRERYLAKQALQDSE 51 (107)
Q Consensus 27 dvP~~v~~~ikrE~ylt~~Allafv 51 (107)
|||..| .++.+++|++..+.++..
T Consensus 11 ~VP~~v-~~lA~~qy~sy~~aLdk~ 34 (171)
T d1x9ya2 11 KVPQKV-KDLAQQQFAGYAKALDKQ 34 (171)
T ss_dssp CCCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cccHHH-HHHHHHHHHHHHHHHHHH
Confidence 799999 788999999888877643
No 5
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=10.66 E-value=1.2e+02 Score=19.24 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHHHH
Q psy15516 72 IPEGLEFKIKRERYLAKQALQDSETM 97 (107)
Q Consensus 72 ~P~~l~~~ikre~yl~~~~l~~~~~~ 97 (107)
-.++|+.||+++.-.+++.|.+....
T Consensus 120 s~e~L~~qI~~D~~~ar~~L~~~~~~ 145 (154)
T d1n08a_ 120 GLDKLIEDIHTDIRVALNSMDRPSYS 145 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcChhHH
Confidence 45788999999999999998776543
No 6
>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=9.50 E-value=1.2e+02 Score=18.43 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=17.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhH
Q psy15516 72 IPEGLEFKIKRERYLAKQALQDS 94 (107)
Q Consensus 72 ~P~~l~~~ikre~yl~~~~l~~~ 94 (107)
-.+.|..||+++.-.+++.|.+.
T Consensus 104 s~~eL~~qI~~Di~~ar~~l~~~ 126 (130)
T d1mrza1 104 SIEELKAAIDQDVKSARNMIDDI 126 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999888888887653
No 7
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.30 E-value=94 Score=19.58 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=21.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHH
Q psy15516 71 DIPEGLEFKIKRERYLAKQALQDSETM 97 (107)
Q Consensus 71 D~P~~l~~~ikre~yl~~~~l~~~~~~ 97 (107)
|-++.|++||+++.-.+++.|...+..
T Consensus 109 ~s~~~L~~qI~~Di~~ar~~l~~~~~~ 135 (147)
T d1nb9a_ 109 DSLESLISAIQGDIEEAKKRLELPEYL 135 (147)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCChhhh
Confidence 456788999999999999988665544
No 8
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.13 E-value=88 Score=20.91 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=26.1
Q ss_pred HHcCCCChhHHHHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHH
Q psy15516 23 ILVPDIPEGLEFKIKRERYLAKQALQDSETMMNHVVFGICRMIDILVP-DIPEGLEFKIKRER 84 (107)
Q Consensus 23 ~lIPdvP~~v~~~ikrE~ylt~~Allafvivfehvv~~~~~~~~~~IP-D~P~~l~~~ikre~ 84 (107)
++++|+|.=+|..+- ..|...+.++...| ...+=.| +.|..++.+||+--
T Consensus 85 ~~~gD~~sP~K~~lg-~~y~~~E~rl~~aI-----------~~rFGLp~~lp~~~~~~IK~AD 135 (200)
T d2gz4a1 85 YVIGDMISPFKSVVG-GGYKTVEKRLEAAV-----------HLRFGLPPHASRELKDRIKKAD 135 (200)
T ss_dssp HHHCCCCGGGGGTSC-HHHHHHHHHHHHHH-----------HHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHhcccchHHHHHhh-HHHHHHHHHHHHHH-----------HHHcCCCCCCCHHHHHHHHHHH
Confidence 345566665543331 23444444433332 3344354 78999887777643
No 9
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=7.11 E-value=2.1e+02 Score=20.89 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy15516 71 DIPEGLEFKIKRERYLAKQALQDSETMMNILENV 104 (107)
Q Consensus 71 D~P~~l~~~ikre~yl~~~~l~~~~~~~~~~~~~ 104 (107)
..|.++..+|++.|-..+....+.+.-+++|+..
T Consensus 7 ~~p~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~ 40 (417)
T d2csga1 7 TLPADPKAAIRQMKQALRAQIGDVQAVFDRLSAT 40 (417)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 4677777888877766666666666666666543
No 10
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.95 E-value=1.8e+02 Score=14.83 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=13.7
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q psy15516 72 IPEGLEFKIKRERYLAKQALQ 92 (107)
Q Consensus 72 ~P~~l~~~ikre~yl~~~~l~ 92 (107)
+|.++++++.|-+-...+...
T Consensus 6 vPr~~~e~~~ki~~~~~~l~q 26 (57)
T d1l0oc_ 6 VSRSLKEMGNKIRKAKDELSK 26 (57)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 788887777666655555443
Done!