RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15516
         (107 letters)



>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel.  The
           family carries eight putative transmembrane domains,
           and, although it has no similarity to other known
           channel proteins, it is clearly a calcium-activated
           ionic channel. It is expressed in various secretory
           epithelia, the retina and sensory neurons, and mediates
           receptor-activated chloride currents in diverse
           physiological processes.
          Length = 449

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 12  HVVFGICRMIDILVPDIPEGLEFKIKRERY 41
           HVV  +  +I  L+PDIPE +  K+KRE+Y
Sbjct: 420 HVVLLLKFLIAWLIPDIPEWVRIKLKREKY 449



 Score = 34.9 bits (81), Expect = 0.004
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 56  HVVFGICRMIDILVPDIPEGLEFKIKRERY 85
           HVV  +  +I  L+PDIPE +  K+KRE+Y
Sbjct: 420 HVVLLLKFLIAWLIPDIPEWVRIKLKREKY 449


>gnl|CDD|215605 PLN03153, PLN03153, hypothetical protein; Provisional.
          Length = 537

 Score = 28.0 bits (62), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 26  PDIPEGLEFKIKRERYL--AKQALQDSETMMNHVVFGI 61
           P +P  L     R R L   ++   ++E  +NH++FGI
Sbjct: 91  PSLPSSLLLDHFRNRSLSEIERLKVEAELSLNHIMFGI 128


>gnl|CDD|235416 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid;
           Reviewed.
          Length = 436

 Score = 25.9 bits (58), Expect = 4.5
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 10/42 (23%)

Query: 54  MNHVVFGICRMIDILVPDIPEGLEFKIKRERY--LAKQALQD 93
           MN   FG       L P + + +  + K+ER    A++AL D
Sbjct: 395 MN-ANFG-------LFPPLGKRIRGEDKKERKEAYAERALAD 428


>gnl|CDD|234241 TIGR03517, GldM_gliding, gliding motility-associated protein GldM. 
           This protein family, GldM, is named for the member from
           Flavobacterium johnsoniae, which is required for a type
           of rapid gliding motility found in certain members of
           the Bacteriodetes. However, members are found also in
           several members of the Bacteriodetes that appear not to
           be motile. The best conserved region, toward the
           N-terminus, is centered on a highly hydrobobic probable
           transmembrane helix. Two paralogs are found in Cytophaga
           hutchinsonii.
          Length = 523

 Score = 25.9 bits (57), Expect = 5.0
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 34  FKIKRERYLAKQALQDSETMMNHVVFGICRMIDILVPDIP 73
                + ++ K   Q    +MN +  G    I+I VP + 
Sbjct: 311 RSFSVDYFVVKPVAQIQAALMNVLYRGCGNPINISVPGVG 350


>gnl|CDD|224127 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in
           translation [Translation, ribosomal structure and
           biogenesis].
          Length = 439

 Score = 25.4 bits (56), Expect = 6.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 11/51 (21%)

Query: 54  MNHVVFGICRMIDILVPDIPEGLEFKIKRERYLAKQALQDSETMMNILENV 104
           MN V FG       L+P++ + +  K +R   LA++AL   E + N L+ +
Sbjct: 399 MN-VNFG-------LLPELEKRIRDKKERYEKLAERAL---EDLKNWLKQL 438


>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
           transaminase; Validated.
          Length = 428

 Score = 25.0 bits (55), Expect = 9.3
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 12/42 (28%)

Query: 45  QALQDSETMMNHVVFG---------ICRMIDILVPDIPEGLE 77
            A++     M+HV+FG         +CR    LV   P+ LE
Sbjct: 66  AAMKSQIDAMSHVMFGGITHPPAIELCRK---LVAMTPQPLE 104


>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
           Members represent alpha subunit of multifunctional
           enzyme complex of the fatty acid degradation cycle.
           Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
           dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
           3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
           3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
           representative is E. coli FadB. This model excludes the
           FadJ family represented by SP:P77399 [Fatty acid and
           phospholipid metabolism, Degradation].
          Length = 714

 Score = 25.2 bits (55), Expect = 10.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 21  IDILVPDIPEGLEFKIKRERYLAKQALQDSETMM 54
           + +L   I   L++K KR+  L    L   E MM
Sbjct: 198 LQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMM 231



 Score = 25.2 bits (55), Expect = 10.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 65  IDILVPDIPEGLEFKIKRERYLAKQALQDSETMM 98
           + +L   I   L++K KR+  L    L   E MM
Sbjct: 198 LQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMM 231


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.144    0.426 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,677,366
Number of extensions: 497177
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 19
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.3 bits)