BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15517
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 141/213 (66%), Gaps = 5/213 (2%)
Query: 190 AIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGF 249
A+ QR+YS + YHT+ +++FIR H++P L QR+ E FQ W+ NGID++ +LK F
Sbjct: 2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDF 61
Query: 250 PECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLY 309
P+ L+ADI +HLN+ LL F+ AS GCLR+LSL KT+ PG+ L+ +GD L ++Y
Sbjct: 62 PDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIY 120
Query: 310 FISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLD 369
F+ GS+E+L+D+ V+AILGK D+ G + + K+++NV+ALTYCDL I L +
Sbjct: 121 FVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLRE 180
Query: 370 VLDLYPEFYNSFTENLE--ITFYMRDEEQAGVD 400
VL LYPE+ F ++ +T+ +R E +G D
Sbjct: 181 VLRLYPEYAQKFVSEIQHDLTYNLR--EGSGAD 211
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 105/150 (70%)
Query: 243 NSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKG 302
VL+ P+ ++ADIC+HLNR + AF+ AS GCLRAL+++F+T H PGD + H G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 303 DVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362
+ + SL F+ GS+E+++DD V+AILGK D++G+ +T+ +S +NVRALTYCDLH I
Sbjct: 66 ESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVI 125
Query: 363 HRDDLLDVLDLYPEFYNSFTENLEITFYMR 392
RD L VL+ Y F +SF+ NL +T+ +R
Sbjct: 126 KRDALQKVLEFYTAFSHSFSRNLILTYNLR 155
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQR+ +Y++H + D S+L E L+ +
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREE 67
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + ++ K + PGD ++ +G + +YFI G +
Sbjct: 68 IINFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV 127
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE CL T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 128 SVLTKGNKETKLADGSYFGE-ICL-LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 185
Query: 377 FYNSF 381
+F
Sbjct: 186 MRRAF 190
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQR+ +Y++H + D S+L E L+ +
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREE 61
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + ++ K + PGD ++ +G + +YFI G +
Sbjct: 62 IINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV 121
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE CL T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 122 SVLTKGNKETKLADGSYFGE-ICL-LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 179
Query: 377 FYNSF 381
+F
Sbjct: 180 MRRAF 184
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQ++ +Y++H + D +S+L L+ +
Sbjct: 8 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREE 66
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I NR L+++ F A P + A+ K K PGD ++ +G + +YFI G +
Sbjct: 67 IVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 126
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE L T G+ +++VRA TY L+ + D+ +VL+ YP
Sbjct: 127 SVLTKGNKEMKLSDGSYFGEISLL--TRGRRTASVRADTYSRLYSLSVDNFNEVLEEYPM 184
Query: 377 FYNSF 381
+F
Sbjct: 185 MRRAF 189
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQR+ +Y++H + D S+L E L+ +
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREE 61
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + ++ K + PGD ++ +G + +YFI G +
Sbjct: 62 IINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV 121
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE CL T G+ ++ VRA TYC L+ + D+ +VL+ YP
Sbjct: 122 SVLTKGNKETKLADGSYFGE-ICL-LTRGRRTARVRADTYCRLYSLSVDNFNEVLEEYPM 179
Query: 377 FYNSF 381
+F
Sbjct: 180 MRRAF 184
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQ++ +Y++H + D +S+L L+ +
Sbjct: 6 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREE 64
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + A+ K K PGD ++ +G + +YFI G +
Sbjct: 65 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 124
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE CL T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 125 SVLTKGNKEMKLSDGSYFGE-ICL-LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 182
Query: 377 FYNSF 381
+F
Sbjct: 183 MRRAF 187
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQ++ +Y++H + D +S+L L+ +
Sbjct: 4 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREE 62
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + A+ K K PGD ++ +G + +YFI G +
Sbjct: 63 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 122
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE CL T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 123 SVLTKGNKEMKLSDGSYFGE-ICL-LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 180
Query: 377 FYNSF 381
+F
Sbjct: 181 MRRAF 185
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQ++ +Y++H + D +S+L L+ +
Sbjct: 6 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREE 64
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + A+ K K PGD ++ +G + +YFI G +
Sbjct: 65 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 124
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE CL T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 125 SVLTKGNKEMKLSDGSYFGE-ICL-LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 182
Query: 377 FYNSF 381
+F
Sbjct: 183 MRRAF 187
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQ++ +Y++H + D +S+L L+ +
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREE 67
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + A+ K K PGD ++ +G + +YFI G +
Sbjct: 68 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 127
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE CL T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 128 SVLTKGNKEMKLSDGSYFGE-ICL-LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 185
Query: 377 FYNSF 381
+F
Sbjct: 186 MRRAF 190
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQ++ +Y++H + D +S+L L+
Sbjct: 6 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREK 64
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + A+ K K PGD ++ +G + +YFI G +
Sbjct: 65 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 124
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE CL T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 125 SVLTKGNKEMKLSDGSYFGE-ICL-LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 182
Query: 377 FYNSF 381
+F
Sbjct: 183 MRRAF 187
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V ++ FH++P RQ++ +Y++H + D +S+L L+ +
Sbjct: 6 SSRRQYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQ-GKXFDEDSILGELNGPLREE 64
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + A K K PGD ++ +G + YFI G +
Sbjct: 65 IVNFNCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVV 124
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE CL T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 125 SVLTKGNKEXKLSDGSYFGE-ICL-LTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPX 182
Query: 377 FYNSF 381
+F
Sbjct: 183 XRRAF 187
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P +RQ++ +Y++H + D ++L + L+ +
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQ-GKIFDEENILSELNDPLREE 67
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L++ F A P + A+ K + PGD ++ +G V +YFI G
Sbjct: 68 IVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVA 127
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
++ L +GE CL T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 128 GVITKSSKEMKLTDGSYFGE-ICL-LTKGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 185
Query: 377 FYNSF 381
+F
Sbjct: 186 MRRAF 190
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 90/187 (48%), Gaps = 2/187 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S + +Y ++ +V E++++ ++P+ LR ++ +Y+++ + D + + E ++ D
Sbjct: 5 SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQD 63
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
+ + R+L+++ F GA + + + P D ++ +G ++FI +G +
Sbjct: 64 VANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIV 123
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+I+ D V+A D Y CL T + ++V+ TYC L + VLD +P
Sbjct: 124 DIIMSDGVIATSLSDGSYFGEICL-LTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPA 182
Query: 377 FYNSFTE 383
+ E
Sbjct: 183 MRKTMEE 189
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR--- 320
+L+ F+G P + AL+ + + P G T+ +G+ LY I G ++I R
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 321 --DDVVMAILGKDDIYGE----NPCLHSTIGKSSSNVRALT 355
+ ++ I+G D++GE +P ++ + + VRA++
Sbjct: 88 DGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVS 128
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR--- 320
+L+ F+G P + AL+ + + P G T+ +G+ LY I G ++I R
Sbjct: 3 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 62
Query: 321 --DDVVMAILGKDDIYGE----NPCLHSTIGKSSSNVRALTY 356
+ ++ I+G D++GE +P ++ + + VRA++
Sbjct: 63 DGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSM 104
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 260 HLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEIL 319
H++ +L+ F+G P + AL+ + + P G T+ +G+ LY I G ++I
Sbjct: 1 HMD-EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIG 59
Query: 320 R-----DDVVMAILGKDDIYGE----NPCLHSTIGKSSSNVRALTY 356
R + ++ I+G D++GE +P ++ + + VRA++
Sbjct: 60 RRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSM 105
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 260 HLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEIL 319
H++ +L+ F+G P + AL+ + + P G T+ +G+ LY I G ++I
Sbjct: 3 HMD-EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIG 61
Query: 320 R-----DDVVMAILGKDDIYGE----NPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDV 370
R + ++ I+G D++GE +P ++ + + VRA++ + RD L
Sbjct: 62 RRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVS------MDRDALRSW 115
Query: 371 LDLYPEF 377
+ PE
Sbjct: 116 IADRPEI 122
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D ++++ L + D GE L +
Sbjct: 25 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE-LGLFEEGQER 83
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 121
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D ++++ L + D GE L +
Sbjct: 24 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE-LGLFEEGQER 82
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 120
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D ++++ L + D GE L +
Sbjct: 25 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE-LGLFEEGQER 83
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 121
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D ++++ L + D GE L +
Sbjct: 24 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE-LGLFEEGQER 82
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 120
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D ++++ L + D GE L +
Sbjct: 17 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE-LGLFEEGQER 75
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 76 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 113
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D ++++ L + D GE L +
Sbjct: 25 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE-LGLFEEGQER 83
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 121
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR--- 320
+L+ F+G P + AL+ + + P G T+ +G+ LY I G ++I R
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 321 --DDVVMAILGKDDIYGE----NPCLHSTIGKSSSNVRALT 355
+ ++ I G D++GE +P ++ + + VRA++
Sbjct: 88 DGRENLLTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVS 128
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D ++++ L + D GE L +
Sbjct: 17 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE-LGLFEEGQER 75
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 76 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 113
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D ++++ L + D GE L +
Sbjct: 24 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE-LGLFEEGQER 82
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 120
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D ++++ L + D GE L +
Sbjct: 75 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE-LGLFEEGQER 133
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 134 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 171
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 266 LSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR----- 320
+ F G +P + F+ P G + ++GD+ +LY ++ G + + R
Sbjct: 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG 60
Query: 321 DDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYP 375
+ +A+LG +++GE L G+ S++ A+ +L + R+D L ++ P
Sbjct: 61 QERTLALLGPGELFGEMSLLDE--GERSASAVAVEDTELLALFREDYLALIRRLP 113
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEIL-----RDDVVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L +++++ L + D GE L +
Sbjct: 24 PSKSTLIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGE-LGLFEEGQER 82
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 120
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKS 347
P TL+H+G+ +LY+I +GS+ +L D +++ L + D GE L +
Sbjct: 25 PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGE-LGLFEEGQER 83
Query: 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S+ VRA T C++ +I ++ + P+ + +
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 121
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD- 321
+ +LS F+G P + L +T P G T+ +G+ LY I+ G +++ R
Sbjct: 25 QEILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHA 84
Query: 322 ----DVVMAILGKDDIYGE 336
+ ++ I+G D++GE
Sbjct: 85 PDGRENLLTIMGPSDMFGE 103
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG+GN +P TD KIFTIL + +G
Sbjct: 45 TTVGYGNFSPQTDFGKIFTILYIFIG 70
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VGFG+ +P TD KIFTIL + +G
Sbjct: 45 TTVGFGDFSPQTDFGKIFTILYIFIG 70
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 4/123 (3%)
Query: 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321
N L++ F+ P L + + P G + G+ ++F+ GS+ +
Sbjct: 226 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 285
Query: 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381
+ V LG +GE + S+ V A T L +H D + PE F
Sbjct: 286 NPVE--LGPGAFFGEMALISGE--PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF 341
Query: 382 TEN 384
+
Sbjct: 342 RKT 344
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSG 198
T+VG+G+V P T K+ I VML G + G VS + Q++ G
Sbjct: 190 TTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKILVG 236
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 35.4 bits (80), Expect = 0.067, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 295 GDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHSTIGKSSS 349
GDTL H+GD LY ++ G +++ R + +A++G ++ GE G ++
Sbjct: 36 GDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENXLAVVGPSELIGELSLFDP--GPRTA 93
Query: 350 NVRALTYCDLHKIHRDDLLDVLDLYPE 376
ALT L + DL L++ PE
Sbjct: 94 TGTALTEVKLLALGHGDLQPWLNVRPE 120
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 35.0 bits (79), Expect = 0.087, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG+G+ +P TD KIFTIL + +G
Sbjct: 45 TTVGYGDFSPQTDFGKIFTILYIFIG 70
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 35.0 bits (79), Expect = 0.090, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG+G+ +P TD KIFTIL + +G
Sbjct: 45 TTVGYGDFSPQTDFGKIFTILYIFIG 70
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG+G+ +P TD KIFTIL + +G
Sbjct: 45 TTVGYGDFSPQTDFGKIFTILYIFIG 70
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 35.0 bits (79), Expect = 0.100, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG GN +P TD KIFTIL + +G
Sbjct: 62 TTVGAGNFSPQTDFGKIFTILYIFIG 87
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD- 322
L + F+ L L+ + TH G+ ++ +G + + IS+G + + R+D
Sbjct: 157 EFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS 216
Query: 323 -----VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRD 365
V + LGK D +GE + ++NV A I RD
Sbjct: 217 PNEDPVFLRTLGKGDWFGEKALQGEDV--RTANVIAAEAVTCLVIDRD 262
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 298 LVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYC 357
++ +GDV + +Y + G +E+ ++ V + +G ++GE L++ ++ V+ L
Sbjct: 73 IIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCT--RTATVKTLVNV 130
Query: 358 DLHKIHR 364
L I R
Sbjct: 131 KLWAIDR 137
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG GN +P TD KIFTIL + +G
Sbjct: 62 TTVGNGNFSPQTDFGKIFTILYIFIG 87
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG GN +P TD KIFTIL + +G
Sbjct: 62 TTVGEGNFSPQTDFGKIFTILYIFIG 87
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG+G +P TD KIFTIL + +G
Sbjct: 45 TTVGYGEFSPQTDFGKIFTILYIFIG 70
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG GN +P TD KIFTIL + +G
Sbjct: 44 TTVGDGNFSPQTDFGKIFTILYIFIG 69
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG GN +P TD KIFTIL + +G
Sbjct: 62 TTVGDGNFSPQTDFGKIFTILYIFIG 87
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG GN P TD KIFTIL + +G
Sbjct: 62 TTVGAGNFEPQTDFGKIFTILYIFIG 87
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRL 195
T+VG+G+V P T K+ I VML G + G VS + Q++
Sbjct: 178 TTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKI 221
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 266 LSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEIL------ 319
L AF+ P LR + L + G TL +GD+ T+ Y + GS+++
Sbjct: 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103
Query: 320 -RDDVVMAILGKDDIYGE----NPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLY 374
+D V + LG +GE N H+TI S+ +L +I ++D + + Y
Sbjct: 104 HQDAVTICTLGIGTAFGESILDNTPRHATIVTRESS-------ELLRIEQEDFKALWEKY 156
Query: 375 PEF 377
++
Sbjct: 157 RQY 159
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 266 LSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEIL------ 319
L AF+ P LR + L + G TL +GD+ T+ Y + GS+++
Sbjct: 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103
Query: 320 -RDDVVMAILGKDDIYGE----NPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLY 374
+D V + LG +GE N H+TI S+ +L +I ++D + + Y
Sbjct: 104 HQDAVTICTLGIGTAFGESILDNTPRHATIVTRESS-------ELLRIEQEDFKALWEKY 156
Query: 375 PEF 377
++
Sbjct: 157 RQY 159
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 266 LSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEIL------ 319
L AF+ P LR + L + G TL +GD+ T+ Y + GS+++
Sbjct: 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103
Query: 320 -RDDVVMAILGKDDIYGE----NPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLY 374
+D V + LG +GE N H+TI S+ +L +I ++D + + Y
Sbjct: 104 HQDAVTICTLGIGTAFGESILDNTPRHATIVTRESS-------ELLRIEQEDFKALWEKY 156
Query: 375 PEF 377
++
Sbjct: 157 RQY 159
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG GN +P TD K+FTIL + +G
Sbjct: 65 TTVGDGNFSPQTDFGKVFTILYIFIG 90
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVG 177
T+VG G+ +P TD KIFTIL + +G
Sbjct: 45 TTVGDGDFSPQTDFGKIFTILYIFIG 70
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 297 TLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHS--TIGKSSS 349
T+++ GD +L+FI +GS+ IL +D +++ L D +GE + + S+
Sbjct: 23 TIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSA 82
Query: 350 NVRALTYCDLHKI 362
VRA C++ +I
Sbjct: 83 WVRAKVECEVAEI 95
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNV 188
T++G+GNVA TD ++F I LVG ++ + V
Sbjct: 128 TTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGV 164
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 295 GDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRAL 354
G+T++ +GD + Y I +G +++ ++ +G+ +GE ++ T ++ V+A
Sbjct: 76 GETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGT--PRAATVKAK 133
Query: 355 TYCDLHKIHRDDLLDVL 371
T L I RD +L
Sbjct: 134 TNVKLWGIDRDSYRRIL 150
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 295 GDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRAL 354
G+T++ +GD + Y I +G +++ ++ +G+ +GE ++ T ++ V+A
Sbjct: 70 GETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGT--PRAATVKAK 127
Query: 355 TYCDLHKIHRDDLLDVL--------DLYPEFYNSFT 382
T L I RD +L +Y EF + +
Sbjct: 128 TNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS 163
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 295 GDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRAL 354
G+T++ +GD + Y I +G +++ ++ +G+ +GE ++ T ++ V+A
Sbjct: 66 GETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGT--PRAATVKAK 123
Query: 355 TYCDLHKIHRDDLLDVL--------DLYPEFYNSFT 382
T L I RD +L +Y EF + +
Sbjct: 124 TNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS 159
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 295 GDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRAL 354
G+T++ +GD + Y I +G +++ ++ +G+ +GE ++ T ++ V+A
Sbjct: 68 GETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGT--PRAATVKAK 125
Query: 355 TYCDLHKIHRDDLLDVL--------DLYPEFYNSFT 382
T L I RD +L +Y EF + +
Sbjct: 126 TNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS 161
>pdb|1JK9|A Chain A, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|C Chain C, Heterodimer Between H48f-Ysod1 And Yccs
Length = 153
Score = 31.6 bits (70), Expect = 0.97, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 272 FKGASPGCLRALSL--KFKTTHAPPGDTLVHKGD---VLTSLYFISRGSIEILRDDVVMA 326
F A+ GC+ A FK TH P D + H GD V T +++GS + D ++
Sbjct: 50 FGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK----DSLIK 105
Query: 327 ILGKDDIYGENPCLHS 342
++G + G + +H+
Sbjct: 106 LIGPTSVVGRSVVIHA 121
>pdb|1SDY|A Chain A, Structure Solution And Molecular Dynamics Refinement Of
The Yeast Cu,Zn Enzyme Superoxide Dismutase
pdb|1SDY|B Chain B, Structure Solution And Molecular Dynamics Refinement Of
The Yeast Cu,Zn Enzyme Superoxide Dismutase
pdb|1SDY|C Chain C, Structure Solution And Molecular Dynamics Refinement Of
The Yeast Cu,Zn Enzyme Superoxide Dismutase
pdb|1SDY|D Chain D, Structure Solution And Molecular Dynamics Refinement Of
The Yeast Cu,Zn Enzyme Superoxide Dismutase
pdb|1B4L|A Chain A, 15 Atmosphere Oxygen Yeast CuZN SUPEROXIDE DISMUTASE ROOM
Temperature (298k) Structure
pdb|1YAZ|A Chain A, Azide-Bound Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM
Temperature (298k) Structure
pdb|1JCV|A Chain A, Reduced Bridge-Broken Yeast CuZN SUPEROXIDE DISMUTASE LOW
TEMPERATURE (-180c) Structure
pdb|1YSO|A Chain A, Yeast Cu, Zn Superoxide Dismutase With The Reduced Bridge
Broken
pdb|2JCW|A Chain A, Reduced Bridge-Broken Yeast CuZN SUPEROXIDE DISMUTASE ROOM
Temperature (298k) Structure
Length = 153
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 272 FKGASPGCLRALSL--KFKTTHAPPGDTLVHKGD---VLTSLYFISRGSIEILRDDVVMA 326
F A+ GC+ A FK TH P D + H GD V T +++GS + D ++
Sbjct: 50 FGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK----DSLIK 105
Query: 327 ILGKDDIYGENPCLHS 342
++G + G + +H+
Sbjct: 106 LIGPTSVVGRSVVIHA 121
>pdb|1F1D|A Chain A, Crystal Structure Of Yeast H46c Cuznsod Mutant
Length = 154
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 272 FKGASPGCLRALSL--KFKTTHAPPGDTLVHKGD---VLTSLYFISRGSIEILRDDVVMA 326
F A+ GC+ A FK TH P D + H GD V T +++GS + D ++
Sbjct: 51 FGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK----DSLIK 106
Query: 327 ILGKDDIYGENPCLHS 342
++G + G + +H+
Sbjct: 107 LIGPTSVVGRSVVIHA 122
>pdb|1F1A|A Chain A, Crystal Structure Of Yeast H48q Cuznsod Fals Mutant Analog
Length = 154
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 272 FKGASPGCLRALSL--KFKTTHAPPGDTLVHKGD---VLTSLYFISRGSIEILRDDVVMA 326
F A+ GC+ A FK TH P D + H GD V T +++GS + D ++
Sbjct: 51 FGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK----DSLIK 106
Query: 327 ILGKDDIYGENPCLHS 342
++G + G + +H+
Sbjct: 107 LIGPTSVVGRSVVIHA 122
>pdb|1B4T|A Chain A, H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE
(298k) Structure
Length = 153
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 272 FKGASPGCLRALSL--KFKTTHAPPGDTLVHKGD---VLTSLYFISRGSIEILRDDVVMA 326
F A+ GC+ A FK TH P D + H GD V T +++GS + D ++
Sbjct: 50 FGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK----DSLIK 105
Query: 327 ILGKDDIYGENPCLHS 342
++G + G + +H+
Sbjct: 106 LIGPTSVVGRSVVIHA 121
>pdb|1F1G|A Chain A, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|B Chain B, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|C Chain C, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|D Chain D, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|E Chain E, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
pdb|1F1G|F Chain F, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
Length = 154
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 272 FKGASPGCLRALSL--KFKTTHAPPGDTLVHKGD---VLTSLYFISRGSIEILRDDVVMA 326
F A+ GC+ A FK TH P D + H GD V T +++GS + D ++
Sbjct: 51 FGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFK----DSLIK 106
Query: 327 ILGKDDIYGENPCLHS 342
++G + G + +H+
Sbjct: 107 LIGPTSVVGRSVVIHA 122
>pdb|1F18|A Chain A, Crystal Structure Of Yeast Copper-Zinc Superoxide
Dismutase Mutant Gly85arg
Length = 154
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 272 FKGASPGCLRALSL--KFKTTHAPPGDTLVHKGD---VLTSLYFISRGSIEILRDDVVMA 326
F A+ GC+ A FK TH P D + H GD V T +++GS + D ++
Sbjct: 51 FGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMRNVKTDENGVAKGSFK----DSLIK 106
Query: 327 ILGKDDIYGENPCLHS 342
++G + G + +H+
Sbjct: 107 LIGPTSVVGRSVVIHA 122
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 298 LVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYC 357
++ +GDV + +Y + G +E+ ++ V + +G ++GE L++ ++ V+ L
Sbjct: 57 IIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILYNC--TRTATVKTLVNV 114
Query: 358 DLHKIHR 364
L I R
Sbjct: 115 KLWAIDR 121
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 295 GDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRAL 354
G+T++ +GD + Y I +G +++ ++ +G+ +GE ++ T ++ V+A
Sbjct: 69 GETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGT--PRAATVKAK 126
Query: 355 TYCDLHKIHRDDLLDVL 371
T L I RD +L
Sbjct: 127 TNVKLWGIDRDSYRRIL 143
>pdb|2XND|H Chain H, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 131
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 294 PGDTLVHKGDVLTSLYFISRGSIEILRDDVV 324
PG +VH D TS YF+S GS+ + D V
Sbjct: 46 PGLVVVHAEDGTTSKYFVSSGSVTVNADSSV 76
>pdb|1E79|H Chain H, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8E|H Chain H, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|2CK3|H Chain H, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|H Chain H, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2V7Q|H Chain H, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|H Chain H, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|Q Chain Q, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|H Chain H, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 146
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 294 PGDTLVHKGDVLTSLYFISRGSIEILRDDVV 324
PG +VH D TS YF+S GS+ + D V
Sbjct: 60 PGLVVVHAEDGTTSKYFVSSGSVTVNADSSV 90
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321
N L++ F+ P L + + P G + G+ ++F+ GS+ +
Sbjct: 11 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 70
Query: 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381
+ V LG +GE + S+ V A T L +H D + PE F
Sbjct: 71 NPVE--LGPGAFFGEMALISGE--PESATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF 126
>pdb|2W6I|H Chain H, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|H Chain H, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6H|H Chain H, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 168
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 294 PGDTLVHKGDVLTSLYFISRGSIEILRDDVV 324
PG +VH D TS YF+S GS+ + D V
Sbjct: 82 PGLVVVHAEDGTTSKYFVSSGSVTVNADSSV 112
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321
N L++ F+ P L + + P G + G+ ++F+ GS+ +
Sbjct: 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 68
Query: 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381
+ V LG +GE + S+ V A T L +H D + PE F
Sbjct: 69 NPVE--LGPGAFFGEMALISGE--PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF 124
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321
N L++ F+ P L + + P G + G+ ++F+ GS+ +
Sbjct: 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 68
Query: 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381
+ V LG +GE + S+ V A T L +H D + PE F
Sbjct: 69 NPVE--LGPGAFFGEMALISGE--PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF 124
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321
N L++ F+ P L + + P G + G+ ++F+ GS+ +
Sbjct: 13 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 72
Query: 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381
+ V LG +GE + S+ V A T L +H D + PE F
Sbjct: 73 NPVE--LGPGAFFGEMALISGE--PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF 128
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321
N L++ F+ P L + + P G + G+ ++F+ GS+ +
Sbjct: 11 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 70
Query: 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381
+ V LG +GE + S+ V A T L +H D + PE F
Sbjct: 71 NPVE--LGPGAFFGEMALISGE--PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF 126
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321
N L++ F+ P L + + P G + G+ ++F+ GS+ +
Sbjct: 11 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 70
Query: 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381
+ V LG +GE + S+ V A T L +H D + PE F
Sbjct: 71 NPVE--LGPGAFFGEMALISGE--PWSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF 126
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 130 YSEYGAAGKGW--------GGFNFKHLYLRTSVGFGNVAP--NTD----NEKIFTI 171
Y E +G GW G +FK +++ GFG+++P NT+ NEKI I
Sbjct: 181 YCEIDGSGNGWTVFQKRLDGSLDFKKNWIQYKEGFGHLSPTGNTEFWLGNEKIHLI 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,288,055
Number of Sequences: 62578
Number of extensions: 464592
Number of successful extensions: 928
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 90
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)