Query psy15517
Match_columns 472
No_of_seqs 384 out of 3285
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:19:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498|consensus 100.0 2E-59 4.3E-64 481.7 29.7 349 1-384 167-543 (727)
2 PLN03192 Voltage-dependent pot 100.0 6.7E-55 1.5E-59 475.4 34.0 344 2-389 143-501 (823)
3 KOG0500|consensus 100.0 1.5E-53 3.2E-58 407.2 30.2 344 2-384 79-433 (536)
4 KOG0501|consensus 100.0 1.4E-51 3.1E-56 397.9 19.6 357 2-385 299-669 (971)
5 KOG0499|consensus 100.0 1E-46 2.2E-51 365.3 24.9 337 3-391 313-658 (815)
6 PRK09392 ftrB transcriptional 99.7 3.8E-16 8.3E-21 146.4 15.1 141 263-405 6-150 (236)
7 KOG3713|consensus 99.6 4.7E-15 1E-19 144.7 13.3 143 1-199 277-437 (477)
8 PRK11753 DNA-binding transcrip 99.6 1E-14 2.3E-19 134.2 13.8 122 273-395 6-132 (211)
9 PRK11161 fumarate/nitrate redu 99.5 3.3E-14 7.1E-19 133.2 11.9 130 265-397 14-149 (235)
10 cd00038 CAP_ED effector domain 99.5 6.6E-14 1.4E-18 114.8 12.0 109 271-381 1-114 (115)
11 PRK10402 DNA-binding transcrip 99.5 9.6E-14 2.1E-18 129.1 11.6 108 281-390 25-137 (226)
12 COG0664 Crp cAMP-binding prote 99.5 1.8E-13 3.8E-18 125.8 12.8 136 267-404 3-143 (214)
13 smart00100 cNMP Cyclic nucleot 99.5 5E-13 1.1E-17 110.2 12.9 113 271-383 1-118 (120)
14 PF00027 cNMP_binding: Cyclic 99.5 1.6E-13 3.6E-18 107.9 9.3 86 289-376 1-91 (91)
15 KOG1113|consensus 99.4 1.9E-13 4.2E-18 127.7 7.9 120 262-383 120-239 (368)
16 TIGR03697 NtcA_cyano global ni 99.4 2.9E-13 6.4E-18 122.7 8.4 101 295-395 1-106 (193)
17 COG2905 Predicted signal-trans 99.4 1.7E-12 3.8E-17 128.4 13.7 126 263-390 6-132 (610)
18 KOG0614|consensus 99.4 2.2E-13 4.7E-18 132.9 4.1 119 256-376 146-264 (732)
19 PRK09391 fixK transcriptional 99.4 7.1E-12 1.5E-16 116.9 12.4 120 282-406 33-157 (230)
20 KOG0614|consensus 99.3 2.7E-12 5.9E-17 125.3 8.3 119 260-380 268-393 (732)
21 PLN02868 acyl-CoA thioesterase 99.3 2.4E-11 5.1E-16 123.1 12.9 111 264-378 8-122 (413)
22 KOG1545|consensus 99.3 1.1E-12 2.5E-17 122.0 2.3 49 141-192 398-446 (507)
23 PRK13918 CRP/FNR family transc 99.3 9.3E-12 2E-16 113.7 8.3 94 286-388 5-105 (202)
24 PF07885 Ion_trans_2: Ion chan 99.2 5.1E-11 1.1E-15 91.1 6.1 50 141-193 29-78 (79)
25 KOG1113|consensus 99.1 1.8E-10 3.9E-15 108.0 6.8 118 259-379 235-354 (368)
26 KOG1419|consensus 98.9 1.4E-08 3E-13 100.3 10.9 87 130-230 267-353 (654)
27 KOG1420|consensus 98.9 5.6E-09 1.2E-13 103.0 7.8 140 13-202 212-351 (1103)
28 PRK10537 voltage-gated potassi 98.8 8.4E-08 1.8E-12 95.6 13.1 49 141-192 173-221 (393)
29 KOG4390|consensus 98.8 2.3E-10 5.1E-15 107.7 -5.1 131 2-188 265-405 (632)
30 PF00520 Ion_trans: Ion transp 98.6 7.6E-08 1.6E-12 87.0 7.7 129 19-188 62-200 (200)
31 KOG2968|consensus 98.6 5.5E-08 1.2E-12 100.9 5.4 111 278-390 499-614 (1158)
32 PF04831 Popeye: Popeye protei 98.1 0.00019 4.1E-09 60.2 14.0 114 274-387 14-132 (153)
33 PRK11832 putative DNA-binding 97.8 0.00046 1E-08 61.8 13.5 105 279-386 14-120 (207)
34 KOG2968|consensus 97.8 0.00012 2.5E-09 77.0 10.7 107 283-389 111-227 (1158)
35 KOG3684|consensus 97.8 0.00042 9E-09 68.0 13.1 84 141-235 292-375 (489)
36 KOG1418|consensus 97.7 4.1E-05 8.8E-10 78.1 4.5 54 135-195 118-171 (433)
37 PF01007 IRK: Inward rectifier 97.5 0.00014 2.9E-09 71.0 5.9 52 141-195 89-142 (336)
38 KOG3827|consensus 97.3 0.0016 3.5E-08 62.6 9.9 52 141-195 117-170 (400)
39 KOG4404|consensus 97.0 0.0036 7.9E-08 58.9 8.4 55 135-196 189-251 (350)
40 KOG4404|consensus 96.9 0.00082 1.8E-08 63.1 3.8 51 132-189 80-130 (350)
41 KOG3542|consensus 96.9 0.0033 7.1E-08 64.3 8.1 112 261-374 278-391 (1283)
42 KOG1418|consensus 95.8 0.011 2.5E-07 60.1 5.0 46 133-185 243-296 (433)
43 KOG3542|consensus 95.3 0.024 5.2E-07 58.3 4.9 91 264-364 37-127 (1283)
44 PLN03223 Polycystin cation cha 94.5 0.72 1.6E-05 51.9 13.9 28 168-195 1398-1425(1634)
45 KOG3193|consensus 93.5 0.39 8.4E-06 48.6 8.7 50 135-191 220-269 (1087)
46 PF07883 Cupin_2: Cupin domain 90.2 0.99 2.1E-05 32.8 5.8 67 290-362 3-70 (71)
47 COG4709 Predicted membrane pro 89.6 2.7 5.8E-05 36.9 8.6 76 203-280 4-83 (195)
48 PLN03192 Voltage-dependent pot 84.9 72 0.0016 35.7 19.3 44 216-264 357-400 (823)
49 KOG3676|consensus 84.2 21 0.00046 38.5 13.3 73 152-225 601-680 (782)
50 PF08006 DUF1700: Protein of u 83.8 8.1 0.00018 34.2 8.9 58 203-262 4-65 (181)
51 KOG1053|consensus 78.9 11 0.00025 40.9 9.0 46 139-193 614-663 (1258)
52 TIGR00870 trp transient-recept 78.0 22 0.00048 39.2 11.7 25 50-74 507-531 (743)
53 PRK13290 ectC L-ectoine syntha 77.9 10 0.00023 31.3 7.0 67 289-362 39-106 (125)
54 PF00520 Ion_trans: Ion transp 77.6 6.1 0.00013 34.8 6.1 53 21-73 61-115 (200)
55 PF05899 Cupin_3: Protein of u 76.5 5.6 0.00012 29.5 4.6 30 306-335 26-55 (74)
56 PF14377 DUF4414: Domain of un 64.5 12 0.00026 30.1 4.3 48 211-260 48-105 (108)
57 COG3718 IolB Uncharacterized e 58.9 30 0.00065 31.6 6.1 78 287-366 31-112 (270)
58 COG1917 Uncharacterized conser 58.5 17 0.00036 30.1 4.4 49 287-336 45-94 (131)
59 KOG2302|consensus 57.8 2.9E+02 0.0063 31.2 14.0 36 158-193 1350-1389(1956)
60 KOG0498|consensus 56.3 3.1E+02 0.0067 30.1 16.3 41 247-287 371-416 (727)
61 PF08016 PKD_channel: Polycyst 55.0 51 0.0011 33.6 8.1 20 23-42 307-326 (425)
62 COG0662 {ManC} Mannose-6-phosp 54.6 30 0.00065 28.6 5.2 48 286-334 37-85 (127)
63 PHA02909 hypothetical protein; 54.3 20 0.00043 24.6 3.2 23 151-173 14-36 (72)
64 PRK09943 DNA-binding transcrip 53.7 44 0.00094 29.6 6.5 66 291-362 113-179 (185)
65 PRK11171 hypothetical protein; 51.4 51 0.0011 31.2 6.9 70 288-363 64-135 (266)
66 PF13314 DUF4083: Domain of un 50.6 84 0.0018 21.9 6.5 14 201-214 43-56 (58)
67 PF00060 Lig_chan: Ligand-gate 50.5 14 0.0003 31.1 2.6 67 141-216 49-115 (148)
68 KOG0500|consensus 49.9 2.7E+02 0.0059 28.7 11.7 76 223-317 249-348 (536)
69 smart00835 Cupin_1 Cupin. This 48.0 52 0.0011 27.8 5.8 75 287-366 32-112 (146)
70 PF02037 SAP: SAP domain; Int 47.0 46 0.00099 20.5 3.9 26 205-230 5-35 (35)
71 TIGR03037 anthran_nbaC 3-hydro 46.1 43 0.00093 28.9 4.9 59 299-365 43-104 (159)
72 PHA03029 hypothetical protein; 45.9 1E+02 0.0023 22.5 6.0 38 163-200 2-39 (92)
73 PHA00672 hypothetical protein 45.4 1.6E+02 0.0035 24.2 7.6 85 287-378 49-134 (152)
74 KOG1545|consensus 44.7 47 0.001 32.5 5.3 71 2-72 291-382 (507)
75 PF07697 7TMR-HDED: 7TM-HD ext 43.4 1.3E+02 0.0027 27.2 8.1 58 248-306 147-207 (222)
76 TIGR03214 ura-cupin putative a 43.1 65 0.0014 30.4 6.2 53 306-364 81-133 (260)
77 KOG2378|consensus 42.5 23 0.00049 35.7 2.9 45 330-376 1-46 (573)
78 KOG4440|consensus 39.1 35 0.00077 35.8 3.8 50 141-193 618-667 (993)
79 PRK13264 3-hydroxyanthranilate 38.4 72 0.0016 28.1 5.2 57 303-366 52-111 (177)
80 PRK06771 hypothetical protein; 37.0 1.9E+02 0.0042 22.4 6.6 48 181-228 14-61 (93)
81 PF04962 KduI: KduI/IolB famil 35.3 88 0.0019 29.6 5.7 78 287-365 29-108 (261)
82 PF14377 DUF4414: Domain of un 34.7 1E+02 0.0022 24.7 5.2 48 217-264 8-68 (108)
83 PF11699 CENP-C_C: Mif2/CENP-C 33.2 87 0.0019 23.9 4.3 44 291-335 11-62 (85)
84 PRK04190 glucose-6-phosphate i 31.6 1.4E+02 0.0029 26.8 6.0 47 289-335 72-131 (191)
85 TIGR01479 GMP_PMI mannose-1-ph 31.5 1.4E+02 0.003 31.0 6.9 68 290-363 381-449 (468)
86 COG3450 Predicted enzyme of th 30.3 1.6E+02 0.0034 24.1 5.5 29 306-334 64-92 (116)
87 KOG2302|consensus 28.6 8.8E+02 0.019 27.8 12.0 19 19-37 1538-1556(1956)
88 PRK11171 hypothetical protein; 28.2 2.4E+02 0.0052 26.7 7.4 49 286-335 185-234 (266)
89 TIGR02272 gentisate_1_2 gentis 28.2 2.7E+02 0.0059 27.4 7.8 75 290-372 255-329 (335)
90 PRK15460 cpsB mannose-1-phosph 26.7 1.9E+02 0.0041 30.0 6.9 69 289-363 389-458 (478)
91 COG1615 Uncharacterized conser 25.7 62 0.0014 34.8 3.1 41 142-185 216-256 (885)
92 COG5559 Uncharacterized conser 25.6 1.1E+02 0.0025 21.3 3.3 23 215-237 8-30 (65)
93 PF12973 Cupin_7: ChrR Cupin-l 25.0 1.4E+02 0.003 22.8 4.3 63 287-361 26-88 (91)
94 KOG3300|consensus 24.7 1.9E+02 0.004 24.0 4.9 44 207-251 63-106 (146)
95 smart00513 SAP Putative DNA-bi 23.3 1.3E+02 0.0028 18.3 3.1 25 206-230 6-35 (35)
96 COG3837 Uncharacterized conser 23.2 1.6E+02 0.0034 25.4 4.5 39 299-338 58-96 (161)
97 PF14841 FliG_M: FliG middle d 22.5 1.3E+02 0.0029 22.4 3.7 39 243-289 30-68 (79)
98 PF08475 Baculo_VP91_N: Viral 22.2 1.8E+02 0.0039 25.8 4.8 22 196-217 22-43 (183)
99 KOG3599|consensus 21.7 1.1E+03 0.025 26.2 11.9 7 157-163 637-643 (798)
100 KOG2301|consensus 21.1 2.6E+02 0.0056 33.7 7.2 19 21-39 529-547 (1592)
101 KOG1054|consensus 21.0 72 0.0016 33.4 2.4 49 141-193 600-648 (897)
102 PF10047 DUF2281: Protein of u 20.2 1.1E+02 0.0023 22.1 2.6 22 216-237 10-31 (66)
No 1
>KOG0498|consensus
Probab=100.00 E-value=2e-59 Score=481.70 Aligned_cols=349 Identities=34% Similarity=0.559 Sum_probs=305.1
Q ss_pred CcccccccchhhHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHH
Q psy15517 1 MSEYHEILSKDFFFL----------QRTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAV-------LLLLMATFALIAH 63 (472)
Q Consensus 1 ~~~~~~~~P~~~~~~----------~~~~~~~~llrl~rllrl~r~~~~i~~~~~~~~~~-------l~~l~~~~~~~~H 63 (472)
++|+.|.||++++.. .....+.+++.+.||+|++|+...++++++..... ..++++.+++++|
T Consensus 167 iiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH 246 (727)
T KOG0498|consen 167 LIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASH 246 (727)
T ss_pred HHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 368999999999765 23446889999999999999999999988754333 5589999999999
Q ss_pred HHHHHHHhhccccc---ccc-cccccccccccccccc--CCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCC
Q psy15517 64 WLACIWYAIGNAEK---SSV-GWLDILANDTHQFYIN--GTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAG 137 (472)
Q Consensus 64 ~~aC~~~~i~~~~~---~~~-~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~ 137 (472)
|+||+||+++..+. ... +|+..... ....+.. .-|+++ ++.+|+ +|
T Consensus 247 ~~gc~wYlia~~~~~~~~~~~tw~~~l~~-~~~~~~~~~~fg~~s-----------------------~~~kY~---~a- 298 (727)
T KOG0498|consen 247 WAGCIWYLIAIERPASCPRKATWLGSLGR-LLSCYNLSFTFGIYS-----------------------LALKYV---YA- 298 (727)
T ss_pred HHHHHHHHHHhcccccCcccccccccccc-ccccCcccccccchh-----------------------HHHHHH---HH-
Confidence 99999999997654 233 77764321 0000000 011111 123444 99
Q ss_pred CccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhCC
Q psy15517 138 KGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQ 217 (472)
Q Consensus 138 ~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~ 217 (472)
+||+++|| ||+||||++|.|..|++|+|++|++|.++||++||+|+.++++...+.++|+.++.++++||++++
T Consensus 299 ---Lyw~l~tL---stvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~ 372 (727)
T KOG0498|consen 299 ---LYWGLSTL---STVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQ 372 (727)
T ss_pred ---HHHHhhHh---hhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCE
Q psy15517 218 IPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDT 297 (472)
Q Consensus 218 i~~~L~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~ 297 (472)
+|++|++||++|++|.|..++|+|+++++++||++||.+|.++++.++++++|+|+++|+++++.|+.++++..|+|||+
T Consensus 373 LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~ 452 (727)
T KOG0498|consen 373 LPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEY 452 (727)
T ss_pred CCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcCeEEEEEeeeEEEEEcC----eEEEEeCCCCeec-ccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHh
Q psy15517 298 LVHKGDVLTSLYFISRGSIEILRDD----VVMAILGKDDIYG-ENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLD 372 (472)
Q Consensus 298 I~~~G~~~~~ly~I~~G~v~v~~~~----~~~~~l~~G~~fG-e~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~ 372 (472)
|++|||+.++||||.+|.+++...+ .....+++||+|| |+.... ...|.+.||+|.+.|+++.|++++|..+++
T Consensus 453 iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~-~~~p~t~TVralt~~el~~L~~~dL~~V~~ 531 (727)
T KOG0498|consen 453 IIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWC-LDLPQTRTVRALTYCELFRLSADDLKEVLQ 531 (727)
T ss_pred EEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHH-hcCCCCceeehhhhhhHHhccHHHHHHHHH
Confidence 9999999999999999999999877 8999999999999 655553 225779999999999999999999999999
Q ss_pred hCHHHHHHHHHH
Q psy15517 373 LYPEFYNSFTEN 384 (472)
Q Consensus 373 ~~p~~~~~~~~~ 384 (472)
.||.+...+.+.
T Consensus 532 ~f~~~~~~~l~~ 543 (727)
T KOG0498|consen 532 QFRRLGSKFLQH 543 (727)
T ss_pred HhHHHHHHHHHh
Confidence 999999888874
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=6.7e-55 Score=475.37 Aligned_cols=344 Identities=20% Similarity=0.352 Sum_probs=293.4
Q ss_pred cccccccchhhHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 2 SEYHEILSKDFFFLQ-----RTTTLIGLLKTARLLRLVRVARKIDRYSE-----YGAAVLLLLMATFALIAHWLACIWYA 71 (472)
Q Consensus 2 ~~~~~~~P~~~~~~~-----~~~~~~~llrl~rllrl~r~~~~i~~~~~-----~~~~~l~~l~~~~~~~~H~~aC~~~~ 71 (472)
.|+.|++|++++... .....+++++++|++|+.|+.+.+.++++ +....++++++.+++++||+||+||+
T Consensus 143 ~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~ 222 (823)
T PLN03192 143 MDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYL 222 (823)
T ss_pred HHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999886431 11223445555555555555555554432 22345889999999999999999999
Q ss_pred hcccc-ccccccccccccccccccccCCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccceeeeecccc
Q psy15517 72 IGNAE-KSSVGWLDILANDTHQFYINGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGGFNFKHLYL 150 (472)
Q Consensus 72 i~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~yw~~~tl~~ 150 (472)
++... ..+.+|++....+..+ .+.+.+|+.| +||+++||
T Consensus 223 i~~~~~~~~~~Wi~~~~~~~~~----------------------------------~s~~~~Yi~s----lYwai~Tm-- 262 (823)
T PLN03192 223 IADRYPHQGKTWIGAVIPNFRE----------------------------------TSLWIRYISA----IYWSITTM-- 262 (823)
T ss_pred HHhhcCCCCCchHHHhhhcccc----------------------------------CcHHHHHHHH----HHHHHHHH--
Confidence 98643 3466898642111000 1233345599 99999999
Q ss_pred ceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy15517 151 RTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYF 230 (472)
Q Consensus 151 ~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~y~ 230 (472)
|||||||++|.|+.|+++++++|++|++++||++|++++++.+.+.++.+|+++++.+++||+.+++|++||.||++|+
T Consensus 263 -tTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~ 341 (823)
T PLN03192 263 -TTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYM 341 (823)
T ss_pred -hhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEE
Q psy15517 231 QHAWTYTNGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYF 310 (472)
Q Consensus 231 ~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~ 310 (472)
++.|.. +..+++++++.||++||.++..+++.+.++++++|++++++++.+++..++++.|+|||.|+.+||.++++||
T Consensus 342 ~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~ 420 (823)
T PLN03192 342 CLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYI 420 (823)
T ss_pred HHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEE
Confidence 999986 4578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeEEEEE----cCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHH
Q psy15517 311 ISRGSIEILR----DDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLE 386 (472)
Q Consensus 311 I~~G~v~v~~----~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~ 386 (472)
|.+|.|++.. ++.++..+++|++|||.+++.+ .|++++++|.++|+++.|++++|.++++.+|++...+.+.+.
T Consensus 421 I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~--~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l 498 (823)
T PLN03192 421 VVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCC--RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFL 498 (823)
T ss_pred EEecEEEEEEecCCcceeeEEccCCCEecchHHhcC--CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999986 3467899999999999999954 899999999999999999999999999999999999888876
Q ss_pred HHH
Q psy15517 387 ITF 389 (472)
Q Consensus 387 ~~~ 389 (472)
++.
T Consensus 499 ~~~ 501 (823)
T PLN03192 499 QHH 501 (823)
T ss_pred HHh
Confidence 544
No 3
>KOG0500|consensus
Probab=100.00 E-value=1.5e-53 Score=407.20 Aligned_cols=344 Identities=26% Similarity=0.508 Sum_probs=296.9
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---h-hHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy15517 2 SEYHEILSKDFFFLQRTTTLIGLLKTARLLRLVRVARKIDRYSE---Y-GAAVLLLLMATFALIAHWLACIWYAIGNAEK 77 (472)
Q Consensus 2 ~~~~~~~P~~~~~~~~~~~~~~llrl~rllrl~r~~~~i~~~~~---~-~~~~l~~l~~~~~~~~H~~aC~~~~i~~~~~ 77 (472)
.|.+|++|+|++.... ....+.|++||+|++|+...+++-+. + +..++.+++..+++++||.||++|+++...+
T Consensus 79 lD~l~liP~D~l~~~~--~~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g 156 (536)
T KOG0500|consen 79 LDVLSLIPLDLLLFKD--GSASLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIG 156 (536)
T ss_pred hhhhhhcchhHHhhcC--CcchHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcC
Confidence 5789999999977632 12334457777888888888877543 3 4455999999999999999999999998765
Q ss_pred -cccccccccccccccccccCCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccceeeeeccccceeeec
Q psy15517 78 -SSVGWLDILANDTHQFYINGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGGFNFKHLYLRTSVGF 156 (472)
Q Consensus 78 -~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~yw~~~tl~~~ttvGy 156 (472)
..++|.-.- -.+|..++.+. .+...+|+ .| +||+.-|+ ||+|
T Consensus 157 ~~~d~wvY~~-----------i~d~~~~~c~~---------------~n~~ReY~---~S----~YWStLTl---TTiG- 199 (536)
T KOG0500|consen 157 FTTDDWVYPK-----------INDPEFATCDA---------------GNLTREYL---YS----LYWSTLTL---TTIG- 199 (536)
T ss_pred ccccccccCC-----------ccCccccccch---------------hHHHHHHH---HH----HHHHhhhh---hhcc-
Confidence 355576310 01111111000 01123455 89 99999999 9998
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q psy15517 157 GNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTY 236 (472)
Q Consensus 157 Gdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~ 236 (472)
--..|.|+.|.+|.|+=.++|+.+||-|+|++++++.++|....+|+.+|+-++.||+.+++|..|+.||.+||+|.|.+
T Consensus 200 e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~ 279 (536)
T KOG0500|consen 200 EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAH 279 (536)
T ss_pred CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeE
Q psy15517 237 TNGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316 (472)
Q Consensus 237 ~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v 316 (472)
++..||+++++.||+.|+.+|+.+++.+.|+++++|+++++.++.+++.+++++.|.|||+|+++||.+.+||+|.+|.+
T Consensus 280 ~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L 359 (536)
T KOG0500|consen 280 KKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKL 359 (536)
T ss_pred cccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcC--eEEEEeCCCCeecccccccC----CCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHH
Q psy15517 317 EILRDD--VVMAILGKDDIYGENPCLHS----TIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTEN 384 (472)
Q Consensus 317 ~v~~~~--~~~~~l~~G~~fGe~~~l~~----~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~ 384 (472)
.+..++ .+...+++|++|||++++.- .+.+|++++++++.+.+++++++|+-+++++||+-+..+.+.
T Consensus 360 ~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 360 AVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred EEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 999865 67889999999999999842 235789999999999999999999999999999999888744
No 4
>KOG0501|consensus
Probab=100.00 E-value=1.4e-51 Score=397.86 Aligned_cols=357 Identities=47% Similarity=0.833 Sum_probs=321.1
Q ss_pred cccccccchhhHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy15517 2 SEYHEILSKDFFFLQ-----RTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAE 76 (472)
Q Consensus 2 ~~~~~~~P~~~~~~~-----~~~~~~~llrl~rllrl~r~~~~i~~~~~~~~~~l~~l~~~~~~~~H~~aC~~~~i~~~~ 76 (472)
||.+|.||+|.|... ...+++.-||++|||||-|+.+++++|.+|+.+.++.|+..+.+++||+||+||.++.+|
T Consensus 299 IDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~e 378 (971)
T KOG0501|consen 299 IDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYE 378 (971)
T ss_pred HHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchh
Confidence 688999999998863 456799999999999999999999999999999999999999999999999999999986
Q ss_pred c--------cccccccccccccccccccC-CCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccceeeeec
Q psy15517 77 K--------SSVGWLDILANDTHQFYING-TGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGGFNFKH 147 (472)
Q Consensus 77 ~--------~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~yw~~~t 147 (472)
- ..++|+-...++..+.|.-. ++.+.+.. .++..+.|+ .| +||+++.
T Consensus 379 v~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~g-----------------GPSr~S~Yi---ss----LYfTMt~ 434 (971)
T KOG0501|consen 379 VRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVG-----------------GPSRTSAYI---SS----LYFTMTC 434 (971)
T ss_pred eecccccccccchHHHHHHhhcCCCceeccCCCceeec-----------------CCcccceeh---hh----hhhhhhh
Confidence 2 25689988888777766321 22211110 011134555 99 9999888
Q ss_pred cccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy15517 148 LYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLE 227 (472)
Q Consensus 148 l~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~ 227 (472)
| ||||||+|.|.|+.|++|++.+|++|..+||-++|+++.|++++.+.+++|++.+..+.+||+-..+|..|.+||-
T Consensus 435 m---ttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVM 511 (971)
T KOG0501|consen 435 M---TTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVM 511 (971)
T ss_pred h---hcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 8 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCe
Q psy15517 228 EYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTS 307 (472)
Q Consensus 228 ~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ 307 (472)
+|.--.|...+|.|.++++.--|..++.+|+.+++++.+...|-|+-.|+.+++.|+..+...+.+|||.|++.||..+.
T Consensus 512 DYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDa 591 (971)
T KOG0501|consen 512 DYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDA 591 (971)
T ss_pred HHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHH
Q psy15517 308 LYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385 (472)
Q Consensus 308 ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l 385 (472)
++||++|.+++..++.+++++++||+||+.-.-..+.+...+.++|++.|.+..|.|+.+.+.++=|..++..|.+++
T Consensus 592 LcFvVsGSLEVIQDDEVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 592 LCFVVSGSLEVIQDDEVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred EEEEEecceEEeecCcEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence 999999999999999999999999999985433333345678899999999999999999999999999998888876
No 5
>KOG0499|consensus
Probab=100.00 E-value=1e-46 Score=365.28 Aligned_cols=337 Identities=21% Similarity=0.409 Sum_probs=297.6
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccc-
Q psy15517 3 EYHEILSKDFFFLQRTTTLIGLLKTARLLRLVRVARKIDRYS----EYGAAVLLLLMATFALIAHWLACIWYAIGNAEK- 77 (472)
Q Consensus 3 ~~~~~~P~~~~~~~~~~~~~~llrl~rllrl~r~~~~i~~~~----~~~~~~l~~l~~~~~~~~H~~aC~~~~i~~~~~- 77 (472)
|++||||+|+..+. +....++|+.|+|+..-++.....+. +..+.++++...++++++|+.||++|..+.+++
T Consensus 313 DllsiLPldllY~~--~G~~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sayqgl 390 (815)
T KOG0499|consen 313 DLLSILPLDLLYLF--FGFNPMWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGL 390 (815)
T ss_pred hHHhhhhHHHHHHH--hccchhhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhccc
Confidence 68999999996652 13344556677666665555554443 334455899999999999999999999998886
Q ss_pred cccccccccccccccccccCCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccceeeeeccccceeeecC
Q psy15517 78 SSVGWLDILANDTHQFYINGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGGFNFKHLYLRTSVGFG 157 (472)
Q Consensus 78 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~yw~~~tl~~~ttvGyG 157 (472)
+.+.|+- ++.| ..|+ +| +|||..|+ ||+| |
T Consensus 391 G~~rWVy-----------dg~G----------------------------n~Yi---RC----yyfa~kt~---~tiG-~ 420 (815)
T KOG0499|consen 391 GTTRWVY-----------DGEG----------------------------NEYI---RC----YYFAVKTL---ITIG-G 420 (815)
T ss_pred ccceeEE-----------cCCC----------------------------Ccee---ee----hhhHHHHH---HHhc-C
Confidence 5677873 2222 2455 98 99999999 9999 9
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q psy15517 158 NVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYT 237 (472)
Q Consensus 158 di~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~~ 237 (472)
...|.|..|.+|..+.-+.|+++|+.+||.|-.++...+.+.+.|+..|+..-.||+..+||.+.++||+.+|+|.|+++
T Consensus 421 ~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQ 500 (815)
T KOG0499|consen 421 LPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQ 500 (815)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEE
Q psy15517 238 NGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIE 317 (472)
Q Consensus 238 ~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 317 (472)
+..||.++++.||..|+.+++..++-.++.++.+|++++.+.+..++..++.+.|.|||.|+++||.+.+||+|..|.|+
T Consensus 501 r~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQ 580 (815)
T KOG0499|consen 501 RMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQ 580 (815)
T ss_pred ccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEE---cCeEEEEeCCCCeecccccccC-CCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHh
Q psy15517 318 ILR---DDVVMAILGKDDIYGENPCLHS-TIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYM 391 (472)
Q Consensus 318 v~~---~~~~~~~l~~G~~fGe~~~l~~-~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~ 391 (472)
+.. .+.++.++.+|++|||++++.- ++.+|+++++|.+.|.+++++++|+.+++..||+-...+.+.....++.
T Consensus 581 VlGGp~~~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~ 658 (815)
T KOG0499|consen 581 VLGGPDGTKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQ 658 (815)
T ss_pred EecCCCCCEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHh
Confidence 997 4589999999999999999853 2357899999999999999999999999999999888887776654443
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.69 E-value=3.8e-16 Score=146.39 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=122.7
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE----cCeEEEEeCCCCeecccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR----DDVVMAILGKDDIYGENP 338 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~----~~~~~~~l~~G~~fGe~~ 338 (472)
.+.++.+|+|+.++++.++.+....+.+.|++|++|+++|++++++|+|.+|.|+++. ++..+..+++|++||+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~ 85 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA 85 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence 3578899999999999999999999999999999999999999999999999999985 347889999999999999
Q ss_pred cccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhhCCCCcccc
Q psy15517 339 CLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQAGVDPRCGR 405 (472)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 405 (472)
++.+ .++.++++|.++|+++.+|+++|.+++.++|.+...+.+.+..++........++....+.
T Consensus 86 ~~~~--~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (236)
T PRK09392 86 VVLD--APYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSSA 150 (236)
T ss_pred HhCC--CCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 8854 7899999999999999999999999999999999999998876665544444333333333
No 7
>KOG3713|consensus
Probab=99.62 E-value=4.7e-15 Score=144.71 Aligned_cols=143 Identities=21% Similarity=0.236 Sum_probs=96.5
Q ss_pred CcccccccchhhHH-HH--------------HHHHHHHHHHHHHHHhHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHH
Q psy15517 1 MSEYHEILSKDFFF-LQ--------------RTTTLIGLLKTARLLRLVRVARKIDRY---SEYGAAVLLLLMATFALIA 62 (472)
Q Consensus 1 ~~~~~~~~P~~~~~-~~--------------~~~~~~~llrl~rllrl~r~~~~i~~~---~~~~~~~l~~l~~~~~~~~ 62 (472)
+||+.||+||.+=. +. .+++++|++|++|++||-|...-++-+ .+....-+..|++++.+.+
T Consensus 277 IIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI 356 (477)
T KOG3713|consen 277 IIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGI 356 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999998721 11 223333444444444444433333322 2334444777777777788
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccCCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccce
Q psy15517 63 HWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGG 142 (472)
Q Consensus 63 H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~y 142 (472)
-++|-+-|++-+.+...+ -.||+ .+ +|
T Consensus 357 ~iFStlvY~~Ek~~~~~~-------------------FtSIP------------------------------a~----~W 383 (477)
T KOG3713|consen 357 VIFSTLVYFAEKDEPDTK-------------------FTSIP------------------------------AG----FW 383 (477)
T ss_pred HHHHHHHHHhhhcCCCCC-------------------Ccccc------------------------------ch----hh
Confidence 889999988876553221 11121 66 88
Q ss_pred eeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q psy15517 143 FNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGT 199 (472)
Q Consensus 143 w~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~ 199 (472)
||++|| |||||||++|.|...++++..+.+.|+++.|..|..|.+-+....+..
T Consensus 384 WaiVTM---TTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~ 437 (477)
T KOG3713|consen 384 WAVVTM---TTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSEL 437 (477)
T ss_pred eeeEEE---eeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHH
Confidence 999999 999999999999999999999999999999998888776666544333
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.60 E-value=1e-14 Score=134.22 Aligned_cols=122 Identities=20% Similarity=0.382 Sum_probs=107.2
Q ss_pred cCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeecccccccCCCCcc
Q psy15517 273 KGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGENPCLHSTIGKS 347 (472)
Q Consensus 273 ~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~~~l~~~~~~~ 347 (472)
+-+|++.++.++..++.+.|++|++|+.+|++++.+|+|.+|.++++. ++..+..+++|++||+.+++.+ ..++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~-~~~~ 84 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE-GQER 84 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccC-CCCc
Confidence 348999999999999999999999999999999999999999999985 2367889999999999998853 2467
Q ss_pred eeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 348 SSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 348 ~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
+++++|.++|+++.+++++|.+++.++|++...+.+.+..++......
T Consensus 85 ~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 132 (211)
T PRK11753 85 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTSRK 132 (211)
T ss_pred eEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999888887666444333
No 9
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.55 E-value=3.3e-14 Score=133.20 Aligned_cols=130 Identities=20% Similarity=0.163 Sum_probs=109.5
Q ss_pred hhccCccccCCCHHHHHHHhhhccc-ccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccc
Q psy15517 265 LLSNCSAFKGASPGCLRALSLKFKT-THAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENP 338 (472)
Q Consensus 265 ~l~~~~~F~~~~~~~l~~l~~~~~~-~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~ 338 (472)
.+++.+.|..+++++++.|....+. ..|++|++|+.+||+++++|+|.+|.|+++.. +.++..+.+|++||+.+
T Consensus 14 ~~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~ 93 (235)
T PRK11161 14 SISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDA 93 (235)
T ss_pred cccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecccc
Confidence 3556666667999999999988864 67999999999999999999999999999862 26788889999999976
Q ss_pred cccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhh
Q psy15517 339 CLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQA 397 (472)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~ 397 (472)
++. .+++.+++|.++|+++.+|+++|.+++.++|++...+.+.+..+.........
T Consensus 94 ~~~---~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 149 (235)
T PRK11161 94 IGS---GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMIL 149 (235)
T ss_pred ccC---CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHH
Confidence 542 35567899999999999999999999999999999999998776654444433
No 10
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.54 E-value=6.6e-14 Score=114.78 Aligned_cols=109 Identities=32% Similarity=0.565 Sum_probs=100.3
Q ss_pred cccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcC-----eEEEEeCCCCeecccccccCCCC
Q psy15517 271 AFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIG 345 (472)
Q Consensus 271 ~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-----~~~~~l~~G~~fGe~~~l~~~~~ 345 (472)
+|..++++.+..++..++.+.+.+|++|+.+|++.+++|+|.+|.++++... ..+..+.+|++||+.+++.+ .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~--~ 78 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGN--G 78 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcC--C
Confidence 4788999999999999999999999999999999999999999999998743 67889999999999998843 7
Q ss_pred cceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHH
Q psy15517 346 KSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381 (472)
Q Consensus 346 ~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~ 381 (472)
++..+++|.++|.++.+++++|.+++.++|++...+
T Consensus 79 ~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 79 PRSATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 889999999999999999999999999999987764
No 11
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.51 E-value=9.6e-14 Score=129.14 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=97.5
Q ss_pred HHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeecccccccCCCCcceeEEEEcc
Q psy15517 281 RALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALT 355 (472)
Q Consensus 281 ~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~ 355 (472)
.++...++.+.|++|++|+.+||+.+++|+|.+|.|+++. ++.++..+.+|++||+.+++.+ .+++++++|.+
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~--~~~~~~~~A~~ 102 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDK--DHETKAVQAIE 102 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcC--CCCCccEEEec
Confidence 3577788999999999999999999999999999999986 2367889999999999998754 78999999999
Q ss_pred eEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15517 356 YCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFY 390 (472)
Q Consensus 356 ~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~ 390 (472)
+|+++.+++++|.+++.++|.+...+.+.+..+..
T Consensus 103 ~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~ 137 (226)
T PRK10402 103 ECWCLALPMKDCRPLLLNDALFLRKLCKFLSHKNY 137 (226)
T ss_pred cEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876643
No 12
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.51 E-value=1.8e-13 Score=125.84 Aligned_cols=136 Identities=23% Similarity=0.353 Sum_probs=116.2
Q ss_pred ccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeeccccccc
Q psy15517 267 SNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLH 341 (472)
Q Consensus 267 ~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~ 341 (472)
...+.|...+.+....+......+.+++|+.|+.+||+++.+|+|.+|.++++.. +.++..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 4556677677788888788999999999999999999999999999999999973 36788999999999999996
Q ss_pred CCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhhCCCCccc
Q psy15517 342 STIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQAGVDPRCG 404 (472)
Q Consensus 342 ~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 404 (472)
+ .+++++++|.++|+++.+++++|.+++...|.+...+.+.+..++.........+..+..
T Consensus 83 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~~~~~~~~~~ 143 (214)
T COG0664 83 G--DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERLSLLARKDV 143 (214)
T ss_pred C--CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 5 589999999999999999999999988889999999999998777766665554433333
No 13
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.49 E-value=5e-13 Score=110.23 Aligned_cols=113 Identities=27% Similarity=0.463 Sum_probs=101.2
Q ss_pred cccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccccCCCC
Q psy15517 271 AFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHSTIG 345 (472)
Q Consensus 271 ~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~~~~~ 345 (472)
+|.+++++.++.++..++.+.+++|++|+++|++.+++|+|.+|.++++.. +..+..+.+|++||+.+++.....
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 478899999999999999999999999999999999999999999999863 368889999999999998833335
Q ss_pred cceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHH
Q psy15517 346 KSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTE 383 (472)
Q Consensus 346 ~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 383 (472)
+...++.|.++|.++.++.+++.+.+..+|.+...+.+
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 77899999999999999999999999999998776654
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.48 E-value=1.6e-13 Score=107.91 Aligned_cols=86 Identities=29% Similarity=0.480 Sum_probs=78.9
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEEEcC-----eEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-----~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
++.|++|++|+++|++.+++|+|.+|.++++..+ ..+..+++|++||+.+++.+ .++.++++|.++|+++.||
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~--~~~~~~~~a~~~~~~~~i~ 78 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTG--KPSPFTVIALTDSEVLRIP 78 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHT--SBBSSEEEESSSEEEEEEE
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCC--CccEEEEEEccCEEEEEEe
Confidence 3679999999999999999999999999999732 46889999999999999965 6899999999999999999
Q ss_pred HhHHHHHHhhCHH
Q psy15517 364 RDDLLDVLDLYPE 376 (472)
Q Consensus 364 ~~~f~~ll~~~p~ 376 (472)
+++|.++++++|+
T Consensus 79 ~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 79 REDFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHHHSHH
T ss_pred HHHHHHHHHhCcC
Confidence 9999999999996
No 15
>KOG1113|consensus
Probab=99.44 E-value=1.9e-13 Score=127.66 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=109.7
Q ss_pred hHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeeccccccc
Q psy15517 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLH 341 (472)
Q Consensus 262 ~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~ 341 (472)
..+.+++.-+|++++++.+..+...|.++.+++|+.|+.||+.++.+|+|.+|++.++..+..+..+++|..|||.++++
T Consensus 120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~~v~~~~~g~sFGElALmy 199 (368)
T KOG1113|consen 120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGTYVTTYSPGGSFGELALMY 199 (368)
T ss_pred HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCeEEeeeCCCCchhhhHhhh
Confidence 34577888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHH
Q psy15517 342 STIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTE 383 (472)
Q Consensus 342 ~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~ 383 (472)
+ .||.+|++|.+++.+|.|++..|.+++..+..-..++..
T Consensus 200 n--~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~ 239 (368)
T KOG1113|consen 200 N--PPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYE 239 (368)
T ss_pred C--CCcccceeeccccceEEEeeceeEEEeeccchhhhhhhh
Confidence 7 799999999999999999999999988766555544443
No 16
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.43 E-value=2.9e-13 Score=122.70 Aligned_cols=101 Identities=17% Similarity=0.363 Sum_probs=87.0
Q ss_pred CCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHH
Q psy15517 295 GDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLD 369 (472)
Q Consensus 295 ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ 369 (472)
|+.|+.+||+.+++|+|.+|.|+++. ++.++..+++|++||+.+++.+...++.++++|.++|+++.+|+++|.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 78999999999999999999999986 2366899999999999988864222346889999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 370 VLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 370 ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
++.++|.+...+.+.+..++......
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~~~~ 106 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQTEMM 106 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988766554433
No 17
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.43 E-value=1.7e-12 Score=128.36 Aligned_cols=126 Identities=17% Similarity=0.271 Sum_probs=115.7
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcC-eEEEEeCCCCeeccccccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-VVMAILGKDDIYGENPCLH 341 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~G~~fGe~~~l~ 341 (472)
.+++.++|.|+.++++.+..|...+....|.+||+|...|.+.+++|+|.+|.|++...+ .++..+..||.||..+++.
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~~l~~ 85 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFSSLFT 85 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCccccchhhcc
Confidence 468899999999999999999999999999999999999999999999999999988754 6799999999999999996
Q ss_pred CCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15517 342 STIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFY 390 (472)
Q Consensus 342 ~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~ 390 (472)
. .+....+.|.+++.++.||++.|.++++++|++...+...++.+++
T Consensus 86 ~--~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~ 132 (610)
T COG2905 86 E--LNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLR 132 (610)
T ss_pred c--CCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 5 5556678888899999999999999999999999999988877765
No 18
>KOG0614|consensus
Probab=99.38 E-value=2.2e-13 Score=132.87 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=110.8
Q ss_pred HHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 256 DICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 256 ~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
.=..++-.+.+++..++++++++.+.+++..|.++.|.+|+.|+++||++.++|.+.+|++++...+..+...++|..||
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~ll~~m~~gtvFG 225 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGKLLGKMGAGTVFG 225 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCeeeeccCCchhhh
Confidence 33456677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHH
Q psy15517 336 ENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376 (472)
Q Consensus 336 e~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~ 376 (472)
|.+++++ .+|+++++|+++|.+|.|+|+.|+.++.....
T Consensus 226 ELAILyn--ctRtAsV~alt~~~lWaidR~vFq~IM~~tg~ 264 (732)
T KOG0614|consen 226 ELAILYN--CTRTASVRALTDVRLWAIDREVFQAIMMRTGL 264 (732)
T ss_pred HHHHHhC--CcchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999987 89999999999999999999999999865433
No 19
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.36 E-value=7.1e-12 Score=116.85 Aligned_cols=120 Identities=11% Similarity=0.102 Sum_probs=98.9
Q ss_pred HHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeecccccccCCCCcceeEEEEcce
Q psy15517 282 ALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTY 356 (472)
Q Consensus 282 ~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~ 356 (472)
.++...+.+.|++|++|+.+||+++++|+|.+|.|+++. ++.++..+.+|++||+. . ..++.++++|+++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~--~~~~~~~~~A~~d 107 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---S--GSTHRFTAEAIVD 107 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---C--CCcCCeEEEEcCc
Confidence 356677889999999999999999999999999999986 22578889999999964 2 2567899999999
Q ss_pred EEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhhCCCCccccc
Q psy15517 357 CDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQAGVDPRCGRH 406 (472)
Q Consensus 357 ~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 406 (472)
|+++.+++++|.+++.++|++...+.+.+..++.........+....++.
T Consensus 108 s~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~ 157 (230)
T PRK09391 108 TTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAME 157 (230)
T ss_pred eEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999877765544443333333333
No 20
>KOG0614|consensus
Probab=99.33 E-value=2.7e-12 Score=125.31 Aligned_cols=119 Identities=16% Similarity=0.303 Sum_probs=108.7
Q ss_pred HHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc------CeEEEEeCCCCe
Q psy15517 260 HLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD------DVVMAILGKDDI 333 (472)
Q Consensus 260 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~------~~~~~~l~~G~~ 333 (472)
+.+.++|+.+|+|++++++.+..++..++...|..|+.|+++|+.++.+|+|.+|.|++... +..+..++.||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 45678999999999999999999999999999999999999999999999999999999873 367899999999
Q ss_pred ecccccccCCCCcceeEEEEcce-EEEEEecHhHHHHHHhhCHHHHHH
Q psy15517 334 YGENPCLHSTIGKSSSNVRALTY-CDLHKIHRDDLLDVLDLYPEFYNS 380 (472)
Q Consensus 334 fGe~~~l~~~~~~~~~~~~A~~~-~~l~~l~~~~f~~ll~~~p~~~~~ 380 (472)
|||-+++.. ..|++++.|..+ ++++.|+++.|.+++....++.++
T Consensus 348 FGE~al~~e--dvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek 393 (732)
T KOG0614|consen 348 FGERALLGE--DVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEK 393 (732)
T ss_pred hhHHHhhcc--CccchhhhccCCCceEEEecHHHHHHhcccHHHhhhh
Confidence 999999955 789999999987 999999999999999887777753
No 21
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.29 E-value=2.4e-11 Score=123.08 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=99.0
Q ss_pred HhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc----CeEEEEeCCCCeeccccc
Q psy15517 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD----DVVMAILGKDDIYGENPC 339 (472)
Q Consensus 264 ~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~----~~~~~~l~~G~~fGe~~~ 339 (472)
+.++++++|++++++.++.++..++.+.|++||+|+++|++.+.+|+|.+|.|+++.. +.++..+++|++||+.
T Consensus 8 ~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~-- 85 (413)
T PLN02868 8 EFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG-- 85 (413)
T ss_pred HHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh--
Confidence 4678999999999999999999999999999999999999999999999999999872 3678889999999974
Q ss_pred ccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHH
Q psy15517 340 LHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFY 378 (472)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~ 378 (472)
+. +.++.++++|.++|+++.|+++.|..+...++-..
T Consensus 86 l~--~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~ 122 (413)
T PLN02868 86 LS--GSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDS 122 (413)
T ss_pred hC--CCCcccEEEECCCEEEEEEcHHHHhhhcccccccc
Confidence 43 37899999999999999999999999876554443
No 22
>KOG1545|consensus
Probab=99.28 E-value=1.1e-12 Score=122.04 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=43.0
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAII 192 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~ 192 (472)
+|||++|| |||||||..|.|...+++..++.+.|+.-.|..+..|.+-+
T Consensus 398 FWwavVTM---TTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNF 446 (507)
T KOG1545|consen 398 FWWAVVTM---TTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNF 446 (507)
T ss_pred ceEEEEEE---EeeccccceecccCceehhhHHhhhhheEecccccEEEecc
Confidence 99999999 99999999999999999999999999988877665554333
No 23
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.28 E-value=9.3e-12 Score=113.71 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=78.1
Q ss_pred hcccccccCCCEEEecCC--CcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEE
Q psy15517 286 KFKTTHAPPGDTLVHKGD--VLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCD 358 (472)
Q Consensus 286 ~~~~~~~~~ge~I~~~G~--~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~ 358 (472)
.++.+.|++|++|+.+|| +++++|+|.+|.|+++. ++.++..+.+|++||+.+++ . .+++++++|.++|+
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~--~~~~~~~~A~~~~~ 81 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-G--AERAYFAEAVTDSR 81 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-C--CCCCceEEEcCceE
Confidence 457788999999999999 77999999999999987 23688899999999996554 2 57889999999999
Q ss_pred EEEecHhHHHHHHhhCHHHHHHHHHHHHHH
Q psy15517 359 LHKIHRDDLLDVLDLYPEFYNSFTENLEIT 388 (472)
Q Consensus 359 l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~ 388 (472)
++.++++.| +|++...+.+.+...
T Consensus 82 v~~i~~~~~------~~~~~~~l~~~l~~~ 105 (202)
T PRK13918 82 IDVLNPALM------SAEDNLVLTQHLVRT 105 (202)
T ss_pred EEEEEHHHc------ChhhHHHHHHHHHHH
Confidence 999999987 466666666665433
No 24
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.17 E-value=5.1e-11 Score=91.12 Aligned_cols=50 Identities=32% Similarity=0.712 Sum_probs=45.2
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQ 193 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~ 193 (472)
+||+++|+ ||+||||+.|.++.+++++++.+++|..++++.++.+++.+.
T Consensus 29 ~yfs~~t~---tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 29 LYFSFVTI---TTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHH---TT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999999999999999999998875
No 25
>KOG1113|consensus
Probab=99.08 E-value=1.8e-10 Score=108.01 Aligned_cols=118 Identities=18% Similarity=0.262 Sum_probs=106.6
Q ss_pred HHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE--cCeEEEEeCCCCeecc
Q psy15517 259 LHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR--DDVVMAILGKDDIYGE 336 (472)
Q Consensus 259 ~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~~~~~~l~~G~~fGe 336 (472)
..++.+.|+++|++..+.......++..+.++.|.+|+.|..+|++++.+|+|.+|+|.+.. .+..+ .++.|++|||
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~v-kl~~~dyfge 313 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEV-KLKKGDYFGE 313 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeEE-Eechhhhcch
Confidence 55788999999999999999999999999999999999999999999999999999999875 34555 9999999999
Q ss_pred cccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHH
Q psy15517 337 NPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYN 379 (472)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~ 379 (472)
.+++.+ .+|.++|.|.+...+..+++..|+.++..--++..
T Consensus 314 ~al~~~--~pr~Atv~a~~~~kc~~~dk~~ferllgpc~dilk 354 (368)
T KOG1113|consen 314 LALLKN--LPRAATVVAKGRLKCAKLDKPRFERLLGPCQDILK 354 (368)
T ss_pred HHHHhh--chhhceeeccCCceeeeeChHHHHHHhhHHHHHHH
Confidence 999965 89999999999999999999999999986554443
No 26
>KOG1419|consensus
Probab=98.87 E-value=1.4e-08 Score=100.32 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=64.1
Q ss_pred ccccccCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q psy15517 130 YSEYGAAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRV 209 (472)
Q Consensus 130 y~~Y~~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i 209 (472)
|-.|..| +||...|+ |||||||.+|.|...++++.++.++|+.+|+..-|.+++=++-.- +++.++
T Consensus 267 F~TyADA----LWWG~ITl---tTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV--Qeq~RQ----- 332 (654)
T KOG1419|consen 267 FPTYADA----LWWGVITL---TTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV--QEQHRQ----- 332 (654)
T ss_pred chhHHHH----HHhhheeE---EeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--HHHHHH-----
Confidence 3345588 99999999 999999999999999999999999999999999998888776321 111111
Q ss_pred HHHHHhCCCCHHHHHHHHHHH
Q psy15517 210 REFIRFHQIPNPLRQRLEEYF 230 (472)
Q Consensus 210 ~~~m~~~~i~~~L~~ri~~y~ 230 (472)
++|-+.++.-..|.+-.=+||
T Consensus 333 KHf~rrr~pAA~LIQc~WR~y 353 (654)
T KOG1419|consen 333 KHFNRRRNPAASLIQCAWRYY 353 (654)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 344455555555555444444
No 27
>KOG1420|consensus
Probab=98.86 E-value=5.6e-09 Score=103.02 Aligned_cols=140 Identities=22% Similarity=0.351 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc
Q psy15517 13 FFLQRTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQ 92 (472)
Q Consensus 13 ~~~~~~~~~~~llrl~rllrl~r~~~~i~~~~~~~~~~l~~l~~~~~~~~H~~aC~~~~i~~~~~~~~~W~~~~~~~~~~ 92 (472)
+.++++.--+|+||.+||..+.-+.++++-++..+..++.+++..+ +.-|+...- ++...|++.+.|-.-.++
T Consensus 212 iyl~r~wlglrflralrlmtvpdilqylnilktsssirl~qlvsif--isvwltaag-~ihllensgdp~~~f~n~---- 284 (1103)
T KOG1420|consen 212 IYLNRSWLGLRFLRALRLMTVPDILQYLNILKTSSSIRLVQLVSIF--ISVWLTAAG-FIHLLENSGDPWENFQNN---- 284 (1103)
T ss_pred EEeccchHHHHHHHHHHhccHHHHHHHHHHHhccchhhHHHHHHHH--HHHHHhhcc-eeehhhcCCChhHhccCc----
Confidence 4456777677888888887777777777766666677777776443 333333221 111223444445322111
Q ss_pred ccccCCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccceeeeeccccceeeecCCCCCCCchhHHHHHH
Q psy15517 93 FYINGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTIL 172 (472)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~ 172 (472)
.-+.|..+ +|+.++|| +||||||+...|...+.|.+|
T Consensus 285 ------------------------------------hrltyw~c----vyfl~vtm---stvgygdvyc~t~lgrlfmvf 321 (1103)
T KOG1420|consen 285 ------------------------------------HRLTYWEC----VYFLMVTM---STVGYGDVYCKTTLGRLFMVF 321 (1103)
T ss_pred ------------------------------------ccchhhhe----eeeeEEEe---eeccccceeehhhhhHHHHHH
Confidence 11235588 99999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q psy15517 173 VMLVGSLMYASIFGNVSAIIQRLYSGTARY 202 (472)
Q Consensus 173 ~~i~g~~~~~~iig~i~~i~~~~~~~~~~~ 202 (472)
+++.|..+||.-+..+..++.+.++-..+|
T Consensus 322 fil~glamfasyvpeiielignr~kyggey 351 (1103)
T KOG1420|consen 322 FILGGLAMFASYVPEIIELIGNRKKYGGEY 351 (1103)
T ss_pred HHHHHHHHHHhhhHHHHHHHccccccCcee
Confidence 999999999999999999998765443333
No 28
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.77 E-value=8.4e-08 Score=95.59 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=45.9
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAII 192 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~ 192 (472)
+||++.|+ |||||||+.|.|...++++++++++|+.++++.++.+...+
T Consensus 173 ~y~svvt~---tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 173 FYFSIVTM---STVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred HHhhheee---ecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999998887644
No 29
>KOG4390|consensus
Probab=98.76 E-value=2.3e-10 Score=107.70 Aligned_cols=131 Identities=17% Similarity=0.275 Sum_probs=84.2
Q ss_pred cccccccchhh-HHHHH---HHHH---HHHHHHHHHHhHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 2 SEYHEILSKDF-FFLQR---TTTL---IGLLKTARLLRLVRVAR---KIDRYSEYGAAVLLLLMATFALIAHWLACIWYA 71 (472)
Q Consensus 2 ~~~~~~~P~~~-~~~~~---~~~~---~~llrl~rllrl~r~~~---~i~~~~~~~~~~l~~l~~~~~~~~H~~aC~~~~ 71 (472)
||+.+|+|+.. +...+ +... +|.+|++|++++.|..+ ++.+-.+.-..-+.-|++.+.+.+-++|-++|+
T Consensus 265 IDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfY 344 (632)
T KOG4390|consen 265 IDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFY 344 (632)
T ss_pred HHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 67888999876 22222 1122 23333444444433332 222223333444667777777778888888888
Q ss_pred hccccccccccccccccccccccccCCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccceeeeeccccc
Q psy15517 72 IGNAEKSSVGWLDILANDTHQFYINGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGGFNFKHLYLR 151 (472)
Q Consensus 72 i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~yw~~~tl~~~ 151 (472)
.....+ .+++..-..+ +|++++||
T Consensus 345 AEKg~~-------------------------------------------------at~FTsIPaa----FWYTIVTm--- 368 (632)
T KOG4390|consen 345 AEKGSS-------------------------------------------------ATKFTSIPAA----FWYTIVTM--- 368 (632)
T ss_pred hhcccc-------------------------------------------------ccccccCcHh----Hhhheeee---
Confidence 643221 1233323366 88899999
Q ss_pred eeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy15517 152 TSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNV 188 (472)
Q Consensus 152 ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i 188 (472)
||.||||.+|.|...++|..++.+.|+.+.|..+..|
T Consensus 369 TTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvI 405 (632)
T KOG4390|consen 369 TTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVI 405 (632)
T ss_pred eeccccccchHHHHHHHhhhhhcccceEEEeccccEE
Confidence 9999999999999999999999999999988755443
No 30
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.64 E-value=7.6e-08 Score=87.04 Aligned_cols=129 Identities=21% Similarity=0.307 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccccccccccccccc
Q psy15517 19 TTLIGLLKTARLLRLVRVARKIDRYS---EYGAAVLLLLMATFALIAHWLACIWYAIGNAEKS-SVGWLDILANDTHQFY 94 (472)
Q Consensus 19 ~~~~~llrl~rllrl~r~~~~i~~~~---~~~~~~l~~l~~~~~~~~H~~aC~~~~i~~~~~~-~~~W~~~~~~~~~~~~ 94 (472)
.++.+++|++|++|+.|..+.+.+.. ......+.++++.++++.|++||+++.+...... ...+...
T Consensus 62 ~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~--------- 132 (200)
T PF00520_consen 62 LRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWD--------- 132 (200)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS---------
T ss_pred EEEEEeeccccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccccc---------
Confidence 44555555555555555544444432 2333447888888999999999999998765421 1000000
Q ss_pred ccCCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccceeeeeccccceeeecCCCCCC-----CchhHHH
Q psy15517 95 INGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGGFNFKHLYLRTSVGFGNVAPN-----TDNEKIF 169 (472)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~yw~~~tl~~~ttvGyGdi~p~-----t~~E~~~ 169 (472)
+.+... ..+..+.|. .| +||++.++ ||.|+||+.|. +..+.++
T Consensus 133 ----~~~~~~------------------~~~~f~~~~---~s----~~~~~~~~---t~~~~~~~~~~~~~~~~~~~~~~ 180 (200)
T PF00520_consen 133 ----SENDIY------------------GYENFDSFG---ES----LYWLFQTM---TGEGWGDVMPSCMSARSWLAVIF 180 (200)
T ss_dssp --------SS------------------THHHHSSHH---HH----HHHHHHHH---TTTTCCCCHHHHHHTTSTTHHHH
T ss_pred ----cccccc------------------ccccccccc---cc----cccccccc---ccCCccccccccccccchhHhHH
Confidence 000000 000123444 88 99999999 99999999987 8899999
Q ss_pred H-HHHHHHHHHHHHHHHHHH
Q psy15517 170 T-ILVMLVGSLMYASIFGNV 188 (472)
Q Consensus 170 ~-i~~~i~g~~~~~~iig~i 188 (472)
. ++..+++.++++.++|.+
T Consensus 181 ~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 181 FISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHhcC
Confidence 9 666666668888888864
No 31
>KOG2968|consensus
Probab=98.58 E-value=5.5e-08 Score=100.94 Aligned_cols=111 Identities=22% Similarity=0.330 Sum_probs=99.4
Q ss_pred HHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccccCCCCcceeEEE
Q psy15517 278 GCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHSTIGKSSSNVR 352 (472)
Q Consensus 278 ~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~ 352 (472)
.++..+-..+......||+.++++||.++++|+|.+|+++...+ ..++..++.||.+|+.+.++. .+|..|+.
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~--~~R~tTv~ 576 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTK--QPRATTVM 576 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhc--CCccceEE
Confidence 45566666778889999999999999999999999999998764 257889999999999999965 89999999
Q ss_pred EcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15517 353 ALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFY 390 (472)
Q Consensus 353 A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~ 390 (472)
|+.++++..||..-|..+..+||.+..++.+.+.++..
T Consensus 577 AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~ 614 (1158)
T KOG2968|consen 577 AVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKIL 614 (1158)
T ss_pred EEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999987663
No 32
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=98.06 E-value=0.00019 Score=60.19 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=95.5
Q ss_pred CCCHHHHHHHhhh-cccccccCCCEEEecCC-CcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccC---CCCcce
Q psy15517 274 GASPGCLRALSLK-FKTTHAPPGDTLVHKGD-VLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHS---TIGKSS 348 (472)
Q Consensus 274 ~~~~~~l~~l~~~-~~~~~~~~ge~I~~~G~-~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~---~~~~~~ 348 (472)
+.|....++|+.. .+.....+|+.---||. +.+.+-++++|++++..++..+..+.|-++..-.+.... .++...
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSPEW~s~~~s~~~~FQ 93 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSPEWESLRPSEDDKFQ 93 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccChhhhccccCCCCeEE
Confidence 3577777787766 77789999999999997 469999999999999999999999988887765555432 234567
Q ss_pred eEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHH
Q psy15517 349 SNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEI 387 (472)
Q Consensus 349 ~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~ 387 (472)
+|+.|.++|..+..+|+.+..++.+.|-+..-+...+..
T Consensus 94 VTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGk 132 (153)
T PF04831_consen 94 VTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGK 132 (153)
T ss_pred EEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887766643
No 33
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.85 E-value=0.00046 Score=61.84 Aligned_cols=105 Identities=12% Similarity=0.095 Sum_probs=81.2
Q ss_pred HHHHHhhhcccccccCCCEE-EecCCCcCeEEEEEeeeEEEEEc-CeEEEEeCCCCeecccccccCCCCcceeEEEEcce
Q psy15517 279 CLRALSLKFKTTHAPPGDTL-VHKGDVLTSLYFISRGSIEILRD-DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTY 356 (472)
Q Consensus 279 ~l~~l~~~~~~~~~~~ge~I-~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~ 356 (472)
..+.+....++..+++|..+ +......+.++++.+|.|.+.+. +..+.+..+..+||-...+.+ ....+..+|.++
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~~~~~~--~~~~~~l~ae~~ 91 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLMK--NDIPYKLISEGN 91 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCCeEEEeccCCeEeecccccCC--CCceEEEEEcCc
Confidence 34556777888899999997 55444557899999999999653 366778888899998776643 445678999999
Q ss_pred EEEEEecHhHHHHHHhhCHHHHHHHHHHHH
Q psy15517 357 CDLHKIHRDDLLDVLDLYPEFYNSFTENLE 386 (472)
Q Consensus 357 ~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~ 386 (472)
|+++.+|+++|.++++++. +.+.+.+.+.
T Consensus 92 c~~~~i~~~~~~~iie~~~-LW~~~~~~l~ 120 (207)
T PRK11832 92 CTGYHLPAKQTITLIEQNQ-LWRDAFYWLA 120 (207)
T ss_pred cEEEEeeHHHHHHHHHHhc-hHHHHHHHHH
Confidence 9999999999999999876 4544444443
No 34
>KOG2968|consensus
Probab=97.83 E-value=0.00012 Score=76.99 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=87.8
Q ss_pred HhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccc-c---ccCCC-CcceeEEE
Q psy15517 283 LSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENP-C---LHSTI-GKSSSNVR 352 (472)
Q Consensus 283 l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~-~---l~~~~-~~~~~~~~ 352 (472)
++.+++...+..|++|++.|++.+.+|.+.+|.+++.-+ +..+..+.+|+.|--.. + +.+.+ ..+...++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~ak 190 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAK 190 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeee
Confidence 458888999999999999999999999999999998863 37889999997665332 1 11111 23578899
Q ss_pred EcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15517 353 ALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITF 389 (472)
Q Consensus 353 A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~ 389 (472)
|.++|.+..+|...|.....++|+-..++.+.+..++
T Consensus 191 A~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRL 227 (1158)
T KOG2968|consen 191 AATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRL 227 (1158)
T ss_pred eecCceEEEeccchhhhhhccChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888775444
No 35
>KOG3684|consensus
Probab=97.78 E-value=0.00042 Score=67.97 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=65.1
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhCCCCH
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPN 220 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~ 220 (472)
+|....|. .++||||++|.|.-.+..+++.-++|.++-|.+++.++.-+. ..+--+.+++||-..++..
T Consensus 292 mWli~iTF---lsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmDtqLTk 360 (489)
T KOG3684|consen 292 MWLIAITF---LSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMDTQLTK 360 (489)
T ss_pred HHHHHHHH---hhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 66667777 899999999999999999999999999999999988876654 2233346677777777777
Q ss_pred HHHHHHHHHHHHHHH
Q psy15517 221 PLRQRLEEYFQHAWT 235 (472)
Q Consensus 221 ~L~~ri~~y~~~~~~ 235 (472)
++++-..+-++..|.
T Consensus 361 ~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 361 EHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHH
Confidence 766666555555553
No 36
>KOG1418|consensus
Probab=97.66 E-value=4.1e-05 Score=78.14 Aligned_cols=54 Identities=33% Similarity=0.597 Sum_probs=51.0
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRL 195 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~ 195 (472)
.| +||+++++ ||+|||++.|.|...++++|+..++|+-++..+++.++..+...
T Consensus 118 ~a----l~fs~tv~---TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 118 SA----LLFSITVI---TTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred hh----Hhhhhhee---eeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77 99999999 99999999999999999999999999999999999999998753
No 37
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.54 E-value=0.00014 Score=70.97 Aligned_cols=52 Identities=27% Similarity=0.338 Sum_probs=42.0
Q ss_pred ceeeeeccccceeeecCC--CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 141 GGFNFKHLYLRTSVGFGN--VAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRL 195 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGd--i~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~ 195 (472)
++|++.|+ ||+|||. +.|..+.-.++.++=+++|.++.|+++|.+..=++..
T Consensus 89 F~FSveT~---tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 89 FLFSVETQ---TTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp HHHHHHHH---TT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred eeEEEEEE---EEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 89999999 9999998 6788888888888999999999999999887766644
No 38
>KOG3827|consensus
Probab=97.31 E-value=0.0016 Score=62.64 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=41.9
Q ss_pred ceeeeeccccceeeecCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 141 GGFNFKHLYLRTSVGFGNV--APNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRL 195 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi--~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~ 195 (472)
+-|++.|- ||+|||-= +..-+.-.+..++=+++|+++-++++|.+..-++..
T Consensus 117 FLFSiETQ---tTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 117 FLFSIETQ---TTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred heeeeeee---eeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 78999999 99999964 444555666667778999999999999987776654
No 39
>KOG4404|consensus
Probab=96.96 E-value=0.0036 Score=58.87 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=43.2
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTD--------NEKIFTILVMLVGSLMYASIFGNVSAIIQRLY 196 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~--------~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~ 196 (472)
.| +||.+.|+ ||+|+||.+|... .=..++.+.+++|..+++..++.+.-.+..++
T Consensus 189 ds----~YyCFITl---tTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 189 DS----YYYCFITL---TTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred hh----hheeeeee---eeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88 99999999 9999999988433 23567788888999998888877766665543
No 40
>KOG4404|consensus
Probab=96.92 E-value=0.00082 Score=63.10 Aligned_cols=51 Identities=27% Similarity=0.527 Sum_probs=42.9
Q ss_pred ccccCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15517 132 EYGAAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVS 189 (472)
Q Consensus 132 ~Y~~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~ 189 (472)
++.-| +||+.+.+ ||+|||-.+|.|+..++|+++..++|+-.--..+.+++
T Consensus 80 kF~Ga----FYFa~TVI---tTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 80 KFAGA----FYFATTVI---TTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred ccCcc----eEEEEEEE---eeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 35577 99999999 99999999999999999999999999877555544443
No 41
>KOG3542|consensus
Probab=96.90 E-value=0.0033 Score=64.28 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=89.7
Q ss_pred HhHHhhccCccccCCCHHHHHHHhhhcccc-cccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeeccccc
Q psy15517 261 LNRNLLSNCSAFKGASPGCLRALSLKFKTT-HAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPC 339 (472)
Q Consensus 261 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~-~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~ 339 (472)
...+++.+.|-|.+++-...++||..|... .=.+|.+|...|+.-+.++.|+.|.|++...+.....+.-|+.||...-
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e~l~mGnSFG~~PT 357 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKREELKMGNSFGAEPT 357 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceEEeecccccCCCCC
Confidence 345678889999999999999999888754 4478999999999999999999999999998877788999999998665
Q ss_pred ccCCCCcceeEEE-EcceEEEEEecHhHHHHHHhhC
Q psy15517 340 LHSTIGKSSSNVR-ALTYCDLHKIHRDDLLDVLDLY 374 (472)
Q Consensus 340 l~~~~~~~~~~~~-A~~~~~l~~l~~~~f~~ll~~~ 374 (472)
... ....-.++ -+.+|+..+|...|+-.++..-
T Consensus 358 ~dk--qym~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 358 PDK--QYMIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred cch--hhhhhhhheecccceEEEeehhhHHHHHHHH
Confidence 532 11222223 3578999999999998887643
No 42
>KOG1418|consensus
Probab=95.82 E-value=0.011 Score=60.07 Aligned_cols=46 Identities=28% Similarity=0.456 Sum_probs=38.9
Q ss_pred cccCCCccceeeeeccccceeeecCCCCCCCchhH--------HHHHHHHHHHHHHHHHHH
Q psy15517 133 YGAAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEK--------IFTILVMLVGSLMYASIF 185 (472)
Q Consensus 133 Y~~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~--------~~~i~~~i~g~~~~~~ii 185 (472)
|..| +||+++++ ||+||||+.|.+...+ ....++.++|....+.+.
T Consensus 243 f~~~----~Yf~fisl---tTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 243 FIEA----FYFSFISL---TTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eEee----eeEEEEEe---eeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 5588 99999999 9999999999998866 577778888887777665
No 43
>KOG3542|consensus
Probab=95.29 E-value=0.024 Score=58.25 Aligned_cols=91 Identities=23% Similarity=0.256 Sum_probs=75.4
Q ss_pred HhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCC
Q psy15517 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHST 343 (472)
Q Consensus 264 ~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~ 343 (472)
..|.+...|+++-..-++.++...+...++.+.++|+.|+.+.++|++++|.|-+.. ..+.|-.+||-. +
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----qi~mp~~~fgkr-----~ 106 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----QIYMPYGCFGKR-----T 106 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----ceecCccccccc-----c
Confidence 356677888888888999999999999999999999999999999999999987643 345666678863 3
Q ss_pred CCcceeEEEEcceEEEEEecH
Q psy15517 344 IGKSSSNVRALTYCDLHKIHR 364 (472)
Q Consensus 344 ~~~~~~~~~A~~~~~l~~l~~ 364 (472)
++.|+..+-.+++++..+++.
T Consensus 107 g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 107 GQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred ccccccceeeecccceeeeec
Confidence 467888888899999988843
No 44
>PLN03223 Polycystin cation channel protein; Provisional
Probab=94.53 E-value=0.72 Score=51.94 Aligned_cols=28 Identities=7% Similarity=0.193 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 168 IFTILVMLVGSLMYASIFGNVSAIIQRL 195 (472)
Q Consensus 168 ~~~i~~~i~g~~~~~~iig~i~~i~~~~ 195 (472)
.|..+++++..++.-++++.|...+...
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666666666544
No 45
>KOG3193|consensus
Probab=93.53 E-value=0.39 Score=48.56 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=37.5
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAI 191 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i 191 (472)
.| .||.++|. +||||||..|.-...+++.++++-++.++..--+..++..
T Consensus 220 ~s----~y~v~vtf---stvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~t 269 (1087)
T KOG3193|consen 220 TS----FYFVMVTF---STVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQT 269 (1087)
T ss_pred ee----EEEEEEEE---eeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHH
Confidence 67 99999999 9999999999988877777666666655544444444443
No 46
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=90.20 E-value=0.99 Score=32.78 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=43.7
Q ss_pred ccccCCCEEEecCCCcC-eEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 290 THAPPGDTLVHKGDVLT-SLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 290 ~~~~~ge~I~~~G~~~~-~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
..++||+..-..-.+.. .+++|++|++.+..++. ...+++||.+= .+.+.++......-+++.++.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~-----i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE-RVELKPGDAIY-----IPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE-EEEEETTEEEE-----EETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE-EeEccCCEEEE-----ECCCCeEEEEECCCCCEEEEEE
Confidence 35778886665555555 99999999999996554 67788988542 2223444554455555665543
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=89.57 E-value=2.7 Score=36.89 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcCCCHHHHHhhC--cHhHHHHHHHHHhHHhhccCccccCCCHH
Q psy15517 203 HTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTY--TNGIDMNSVLKGF--PECLQADICLHLNRNLLSNCSAFKGASPG 278 (472)
Q Consensus 203 ~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~--~~~~~~~~ll~~L--p~~L~~~i~~~~~~~~l~~~~~F~~~~~~ 278 (472)
.+-+++++.|++ ++|++.++.+..+|+-++.. .++.+|+++..+| |.++-.|+..+.-.+-.+.-|-+.+.+..
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 355678888886 89999999999999766654 3678899999988 78888888877666666655656555443
Q ss_pred HH
Q psy15517 279 CL 280 (472)
Q Consensus 279 ~l 280 (472)
.+
T Consensus 82 ii 83 (195)
T COG4709 82 II 83 (195)
T ss_pred HH
Confidence 33
No 48
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=84.89 E-value=72 Score=35.73 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHH
Q psy15517 216 HQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLNRN 264 (472)
Q Consensus 216 ~~i~~~L~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~ 264 (472)
..+|+.|+.+|..++.... .+.-.+++.++++...++...+...
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~~~ 400 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMKAE 400 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhhee
Confidence 4789999999887764322 2233577888888888887766544
No 49
>KOG3676|consensus
Probab=84.24 E-value=21 Score=38.49 Aligned_cols=73 Identities=19% Similarity=0.380 Sum_probs=47.4
Q ss_pred eeeecCCCCC--CCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh-HHHHHHHHHHHHHHHhCCCCHHHHH
Q psy15517 152 TSVGFGNVAP--NTDN----EKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGT-ARYHTQMLRVREFIRFHQIPNPLRQ 224 (472)
Q Consensus 152 ttvGyGdi~p--~t~~----E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~-~~~~~~~~~i~~~m~~~~i~~~L~~ 224 (472)
.|+||||... .++. =.+|.+++.++.+.++-.+|+.++.........+ ++.+.+- ...-.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~-A~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQW-AATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHH-HHHHHHHHhcCCHHHHH
Confidence 5899999754 3322 3455666667777777777887777777665555 3444333 33344556889998887
Q ss_pred H
Q psy15517 225 R 225 (472)
Q Consensus 225 r 225 (472)
+
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 6
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=83.79 E-value=8.1 Score=34.25 Aligned_cols=58 Identities=12% Similarity=0.409 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcCCCHHHHHhhC--cHhHHHHHHHHHh
Q psy15517 203 HTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTY--TNGIDMNSVLKGF--PECLQADICLHLN 262 (472)
Q Consensus 203 ~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~--~~~~~~~~ll~~L--p~~L~~~i~~~~~ 262 (472)
++-+++++++++ ++|++-++++.+||+-+... .++.+|+++.++| |.++-+++..+..
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 456778889997 69999999999999877764 4577899999998 7888787775543
No 51
>KOG1053|consensus
Probab=78.94 E-value=11 Score=40.94 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=35.3
Q ss_pred ccceeeeeccccceeeecCCCC----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 139 GWGGFNFKHLYLRTSVGFGNVA----PNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQ 193 (472)
Q Consensus 139 ~w~yw~~~tl~~~ttvGyGdi~----p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~ 193 (472)
-|+-|++. ||.-+ |..+..++...++.++++++.|.-.++++..+-
T Consensus 614 iwllwaLv---------FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 614 IWLLWALV---------FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred HHHHHHHH---------hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777754 45433 456778999999999999999988888887764
No 52
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=77.97 E-value=22 Score=39.20 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15517 50 VLLLLMATFALIAHWLACIWYAIGN 74 (472)
Q Consensus 50 ~l~~l~~~~~~~~H~~aC~~~~i~~ 74 (472)
.+++.++.++++.=-+||.++.+..
T Consensus 507 dl~~F~~i~~v~l~aF~~~~~~l~~ 531 (743)
T TIGR00870 507 DILRFLFIYAVVLFGFACGLNQLYQ 531 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666667777777653
No 53
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=77.93 E-value=10 Score=31.33 Aligned_cols=67 Identities=12% Similarity=0.010 Sum_probs=41.9
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEE-EcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEIL-RDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~-~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
...++||...-..-....++++|++|++.+. ..+.....+.+||.+--. ...++. +++.++++++.+
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~~~-----~~~~H~--~~N~e~~~~l~v 106 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTMYALD-----KHDRHY--LRAGEDMRLVCV 106 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeEEEEC-----CCCcEE--EEcCCCEEEEEE
Confidence 3467888755332122247999999999998 543455789999976432 223333 444477777665
No 54
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=77.57 E-value=6.1 Score=34.82 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 21 LIGLLKTARLLRLVRVARKIDRYSEYGAAV--LLLLMATFALIAHWLACIWYAIG 73 (472)
Q Consensus 21 ~~~llrl~rllrl~r~~~~i~~~~~~~~~~--l~~l~~~~~~~~H~~aC~~~~i~ 73 (472)
.++++|++|++|+.|+.+..+......... ..+-+..++++.+++.|.+..++
T Consensus 61 ~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~ 115 (200)
T PF00520_consen 61 LLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIG 115 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 455566666665555555554444443322 34455555666666666666655
No 55
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=76.49 E-value=5.6 Score=29.46 Aligned_cols=30 Identities=13% Similarity=0.351 Sum_probs=26.2
Q ss_pred CeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 306 TSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 306 ~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
+++.+|++|.|.+...+-....+++||.|=
T Consensus 26 ~E~~~vleG~v~it~~~G~~~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDEDGETVTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEETTTEEEEEETTEEEE
T ss_pred CEEEEEEEeEEEEEECCCCEEEEcCCcEEE
Confidence 888999999999999777778999999763
No 56
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=64.47 E-value=12 Score=30.11 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=35.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHh----------cCCCHHHHHhhCcHhHHHHHHHH
Q psy15517 211 EFIRFHQIPNPLRQRLEEYFQHAWTYT----------NGIDMNSVLKGFPECLQADICLH 260 (472)
Q Consensus 211 ~~m~~~~i~~~L~~ri~~y~~~~~~~~----------~~~~~~~ll~~Lp~~L~~~i~~~ 260 (472)
+||. -+|++++..|...+...-... ...|...++..||++||.+|...
T Consensus 48 efL~--ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 48 EFLA--ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HHHH--hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 4443 589999999999886543321 22355689999999999999764
No 57
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=58.89 E-value=30 Score=31.64 Aligned_cols=78 Identities=10% Similarity=0.166 Sum_probs=53.4
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeC-CCCeecc---cccccCCCCcceeEEEEcceEEEEEe
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILG-KDDIYGE---NPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~-~G~~fGe---~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
++...+.+|+..-.+-...+...+++.|++.+...+.....++ .-+.|-. .++... ..+.+++.|.+++++...
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp--~g~~~~vtA~t~~~vAvC 108 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVP--AGSAFSVTATTDLEVAVC 108 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEec--CCceEEEEeecceEEEEE
Confidence 4566788999887776667888888999999987665555454 2233322 122222 346889999999999887
Q ss_pred cHhH
Q psy15517 363 HRDD 366 (472)
Q Consensus 363 ~~~~ 366 (472)
+.-.
T Consensus 109 ~AP~ 112 (270)
T COG3718 109 SAPG 112 (270)
T ss_pred eCCC
Confidence 6643
No 58
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=58.48 E-value=17 Score=30.13 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=39.8
Q ss_pred cccccccCCCEEEecCCC-cCeEEEEEeeeEEEEEcCeEEEEeCCCCeecc
Q psy15517 287 FKTTHAPPGDTLVHKGDV-LTSLYFISRGSIEILRDDVVMAILGKDDIYGE 336 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe 336 (472)
+....+.||+.+-.---+ .+...+|++|++++... .....+.+||++-.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i~i 94 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVIII 94 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEEEE
Confidence 345678888888777766 67999999999999887 66778999998765
No 59
>KOG2302|consensus
Probab=57.76 E-value=2.9e+02 Score=31.25 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=18.6
Q ss_pred CCCC---CCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 158 NVAP---NTDNEKIFT-ILVMLVGSLMYASIFGNVSAIIQ 193 (472)
Q Consensus 158 di~p---~t~~E~~~~-i~~~i~g~~~~~~iig~i~~i~~ 193 (472)
|+.| .|++-.++. ++..|+..++....+|.+..-+.
T Consensus 1350 dqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfh 1389 (1956)
T KOG2302|consen 1350 DQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFH 1389 (1956)
T ss_pred eeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 445544443 44455555555566665554443
No 60
>KOG0498|consensus
Probab=56.31 E-value=3.1e+02 Score=30.12 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=33.0
Q ss_pred hhCcHhHHHHHHHHHhHHhhc-----cCccccCCCHHHHHHHhhhc
Q psy15517 247 KGFPECLQADICLHLNRNLLS-----NCSAFKGASPGCLRALSLKF 287 (472)
Q Consensus 247 ~~Lp~~L~~~i~~~~~~~~l~-----~~~~F~~~~~~~l~~l~~~~ 287 (472)
..||++||+.|..+...+... .-.+++++|++..++|+.++
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 479999999999887765544 34678899999998887776
No 61
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=54.98 E-value=51 Score=33.59 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=8.5
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q psy15517 23 GLLKTARLLRLVRVARKIDR 42 (472)
Q Consensus 23 ~llrl~rllrl~r~~~~i~~ 42 (472)
-.+|++|++|..|-...+.+
T Consensus 307 ~~lrll~~l~f~~~~~~~~~ 326 (425)
T PF08016_consen 307 LWLRLLKLLRFNRRLSLLSR 326 (425)
T ss_pred HHHHHhhheeecchHHHHHH
Confidence 33444444444444443333
No 62
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=54.56 E-value=30 Score=28.59 Aligned_cols=48 Identities=10% Similarity=0.206 Sum_probs=34.2
Q ss_pred hcccccccCCCEE-EecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 286 KFKTTHAPPGDTL-VHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 286 ~~~~~~~~~ge~I-~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
......+.||+-+ .+--...+++|+|++|...+...+.. ..+++|+.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~-~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEE-VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEE-EEecCCCEE
Confidence 4455667788775 44444579999999999999887543 347777754
No 63
>PHA02909 hypothetical protein; Provisional
Probab=54.32 E-value=20 Score=24.57 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=15.7
Q ss_pred ceeeecCCCCCCCchhHHHHHHH
Q psy15517 151 RTSVGFGNVAPNTDNEKIFTILV 173 (472)
Q Consensus 151 ~ttvGyGdi~p~t~~E~~~~i~~ 173 (472)
|.+|.||+-...-..|..|++.+
T Consensus 14 mlsvdygngkkvyytentfcimv 36 (72)
T PHA02909 14 MLSVDYGNGKKVYYTENTFCIMV 36 (72)
T ss_pred EEEEecCCCeEEEEeccchhHHH
Confidence 37899998776666666665543
No 64
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=53.71 E-value=44 Score=29.61 Aligned_cols=66 Identities=15% Similarity=0.061 Sum_probs=40.9
Q ss_pred cccCCCEEEec-CCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 291 HAPPGDTLVHK-GDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 291 ~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
.+.||...-.. -..+.++.+|++|++.+...+ ....+.+||.+= .+.+.++.+.....+++.++.+
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~-~~~~l~~Gd~~~-----~~~~~~H~~~n~~~~~~~~l~~ 179 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTING-QDYHLVAGQSYA-----INTGIPHSFSNTSAGICRIISA 179 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEECC-EEEEecCCCEEE-----EcCCCCeeeeCCCCCCeEEEEE
Confidence 45566532211 123579999999999998766 446799998653 2233555555544556666655
No 65
>PRK11171 hypothetical protein; Provisional
Probab=51.39 E-value=51 Score=31.24 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=45.1
Q ss_pred ccccccCCCEEEecCCC--cCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 288 KTTHAPPGDTLVHKGDV--LTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~--~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
....+.||...-..... .+++++|++|++.+...+. ...+.+||.+=- ....++.......+.++++.+.
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~-~~~L~~GDsi~~-----p~~~~H~~~N~g~~~a~~l~v~ 135 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK-THALSEGGYAYL-----PPGSDWTLRNAGAEDARFHWIR 135 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE-EEEECCCCEEEE-----CCCCCEEEEECCCCCEEEEEEE
Confidence 34456777654333222 3789999999999987654 577999986532 2234555554455667777764
No 66
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=50.60 E-value=84 Score=21.93 Aligned_cols=14 Identities=14% Similarity=0.346 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q psy15517 201 RYHTQMLRVREFIR 214 (472)
Q Consensus 201 ~~~~~~~~i~~~m~ 214 (472)
..+++++.+-+.+.
T Consensus 43 ~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 43 SMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHc
Confidence 56778877766654
No 67
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=50.45 E-value=14 Score=31.10 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=42.9
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhC
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFH 216 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~ 216 (472)
+++.+.++ +. +-++..|.+...+++.+++.+++.++.++-.|++++.+.... ++..++.+++..+..
T Consensus 49 ~~~~~~~~---~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 49 FWYTFGTL---LQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANSG 115 (148)
T ss_dssp HHHCCCCC---HH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTHS
T ss_pred HHHHHHhh---cc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHCC
Confidence 55556655 44 446789999999999999999999999999999999987532 223344555555443
No 68
>KOG0500|consensus
Probab=49.92 E-value=2.7e+02 Score=28.69 Aligned_cols=76 Identities=12% Similarity=0.278 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHH-----hHHhhccCccccCCCHHHHHHHhhhcccccc-----
Q psy15517 223 RQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHL-----NRNLLSNCSAFKGASPGCLRALSLKFKTTHA----- 292 (472)
Q Consensus 223 ~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~-----~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~----- 292 (472)
.+-|+.|..|+ .+|..|+..+..-. +......-...+.+|+....+|+...+..+.
T Consensus 249 mDGiK~YM~~R--------------kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~i 314 (536)
T KOG0500|consen 249 MDGIKQYMRYR--------------KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRI 314 (536)
T ss_pred HHHHHHHHHHh--------------cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhH
Confidence 35567777663 67888888876432 2334444455666787777777655433222
Q ss_pred --------------cCCCEEEecCCCcCeEEEEEeeeEE
Q psy15517 293 --------------PPGDTLVHKGDVLTSLYFISRGSIE 317 (472)
Q Consensus 293 --------------~~ge~I~~~G~~~~~ly~I~~G~v~ 317 (472)
.-...+|.+|| |+..+|.+.
T Consensus 315 F~~ce~~lL~elVLklk~qvfSPgD-----yICrKGdvg 348 (536)
T KOG0500|consen 315 FQDCEAGLLVELVLKLKPQVFSPGD-----YICRKGDVG 348 (536)
T ss_pred HHhcchhHHHHHHHHhcceeeCCCC-----eEEecCccc
Confidence 22345666665 788899874
No 69
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=48.02 E-value=52 Score=27.80 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=45.2
Q ss_pred cccccccCCCEEEecCCC-cCeEEEEEeeeEEEEEcC-----eEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEE
Q psy15517 287 FKTTHAPPGDTLVHKGDV-LTSLYFISRGSIEILRDD-----VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLH 360 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~-----~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~ 360 (472)
+....+.||...-..-.+ .+++++|++|+..+...+ .....+++||.+=..+ +..+.......+++.++
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~-----g~~H~~~n~~~~~~~~l 106 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQ-----GHPHFQVNSGDENLEFV 106 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECC-----CCEEEEEcCCCCCEEEE
Confidence 344567787775444322 578999999999987633 3477899999764321 12333333334556666
Q ss_pred EecHhH
Q psy15517 361 KIHRDD 366 (472)
Q Consensus 361 ~l~~~~ 366 (472)
.++-.+
T Consensus 107 ~~~~~~ 112 (146)
T smart00835 107 AFNTND 112 (146)
T ss_pred EEecCC
Confidence 664443
No 70
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=46.95 E-value=46 Score=20.53 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q psy15517 205 QMLRVREFIRFHQIP-----NPLRQRLEEYF 230 (472)
Q Consensus 205 ~~~~i~~~m~~~~i~-----~~L~~ri~~y~ 230 (472)
+..++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 346788889988888 68888888874
No 71
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=46.15 E-value=43 Score=28.95 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=39.5
Q ss_pred EecCCCcCeEEEEEeeeEEEEEcC---eEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHh
Q psy15517 299 VHKGDVLTSLYFISRGSIEILRDD---VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRD 365 (472)
Q Consensus 299 ~~~G~~~~~ly~I~~G~v~v~~~~---~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~ 365 (472)
+... ..+++|++++|.+.+...+ .....+++||+|=. + ..-+.+-++..+|.++.|.+.
T Consensus 43 ~H~~-~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flv-----P--~gvpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDD-PGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLL-----P--PHVPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccC-CCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEe-----C--CCCCcccccCCCcEEEEEEeC
Confidence 4443 3799999999999885533 23577899987632 1 223344555678888888765
No 72
>PHA03029 hypothetical protein; Provisional
Probab=45.91 E-value=1e+02 Score=22.52 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=26.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q psy15517 163 TDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTA 200 (472)
Q Consensus 163 t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~ 200 (472)
++.|.++-++..++=.++.-.++|.+-..+-+.++.+.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~ra 39 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRA 39 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888777777777777777777766654443
No 73
>PHA00672 hypothetical protein
Probab=45.39 E-value=1.6e+02 Score=24.18 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=49.6
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcce-EEEEEecHh
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTY-CDLHKIHRD 365 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~-~~l~~l~~~ 365 (472)
.++...++|..+.-.=-.-+.+ ++.+|.+.++..+.....-++.-.-|- .+.++...+.+-++ +.+..-...
T Consensus 49 ARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~tdge~~rl~g~~~i~~~------aG~KragyAHeDT~wt~~h~seer 121 (152)
T PHA00672 49 ARTIRIPAGVALTGALIKVSTV-LIFSGHATVFIGGEAVELRGYHVIPAS------AGRKQAFVAHADTDLTMLFPSEAR 121 (152)
T ss_pred EEEEeccCceeeeeeeeEeeEE-EEecccEEEEeCCcEEEEecceeeecC------CCcccceeeeccceEEEEeccccc
Confidence 4567788998887655556777 999999999998755554444333222 23445544554444 333333444
Q ss_pred HHHHHHhhCHHHH
Q psy15517 366 DLLDVLDLYPEFY 378 (472)
Q Consensus 366 ~f~~ll~~~p~~~ 378 (472)
++.....++....
T Consensus 122 ~v~~a~a~~~~~~ 134 (152)
T PHA00672 122 SVAEAEAEFTDEA 134 (152)
T ss_pred cHHHHHhhcccHH
Confidence 4555444444433
No 74
>KOG1545|consensus
Probab=44.68 E-value=47 Score=32.54 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=38.6
Q ss_pred cccccccchhhHHH-----H-------------HHHHHHHHHHHHHHHhHHHHHHHHH---HHHHhhHHHHHHHHHHHHH
Q psy15517 2 SEYHEILSKDFFFL-----Q-------------RTTTLIGLLKTARLLRLVRVARKID---RYSEYGAAVLLLLMATFAL 60 (472)
Q Consensus 2 ~~~~~~~P~~~~~~-----~-------------~~~~~~~llrl~rllrl~r~~~~i~---~~~~~~~~~l~~l~~~~~~ 60 (472)
||+-||+|+..-.. . ..++++||.|++|++||.|..+-++ +..+.++.-+..|++++++
T Consensus 291 IDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfI 370 (507)
T KOG1545|consen 291 IDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFI 370 (507)
T ss_pred HHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999865222 1 1233444444444444444444443 3334455557777777666
Q ss_pred HHHHHHHHHHhh
Q psy15517 61 IAHWLACIWYAI 72 (472)
Q Consensus 61 ~~H~~aC~~~~i 72 (472)
..-+++...|+.
T Consensus 371 gviLFsSavYFA 382 (507)
T KOG1545|consen 371 GVILFSSAVYFA 382 (507)
T ss_pred HHHHHhceeeee
Confidence 666666666554
No 75
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=43.42 E-value=1.3e+02 Score=27.23 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=37.5
Q ss_pred hCcHhHHHHHHHHHhHHhhccCcccc-CCCHHHHHHHhhhccccc--ccCCCEEEecCCCcC
Q psy15517 248 GFPECLQADICLHLNRNLLSNCSAFK-GASPGCLRALSLKFKTTH--APPGDTLVHKGDVLT 306 (472)
Q Consensus 248 ~Lp~~L~~~i~~~~~~~~l~~~~~F~-~~~~~~l~~l~~~~~~~~--~~~ge~I~~~G~~~~ 306 (472)
.+|+. ...+...+...+++-.-.|. ..++...++......+.. +.+||.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 34555 33344444444443333333 356677777888888888 999999999999753
No 76
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=43.13 E-value=65 Score=30.40 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=35.9
Q ss_pred CeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecH
Q psy15517 306 TSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHR 364 (472)
Q Consensus 306 ~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~ 364 (472)
+++.+|++|++.+...+.. ..+++||++=- +.+.++...-...++++++.+.+
T Consensus 81 ee~iyVl~G~l~v~~~g~~-~~L~~Gd~~y~-----pa~~~H~~~N~~~~~a~~l~v~k 133 (260)
T TIGR03214 81 ETFLFVISGEVNVTAEGET-HELREGGYAYL-----PPGSKWTLANAQAEDARFFLYKK 133 (260)
T ss_pred EEEEEEEeCEEEEEECCEE-EEECCCCEEEE-----CCCCCEEEEECCCCCEEEEEEEe
Confidence 7899999999999876644 58999997532 12244444444455677766653
No 77
>KOG2378|consensus
Probab=42.51 E-value=23 Score=35.65 Aligned_cols=45 Identities=11% Similarity=0.295 Sum_probs=37.3
Q ss_pred CCCeecccccccCCCCcceeEEEEcc-eEEEEEecHhHHHHHHhhCHH
Q psy15517 330 KDDIYGENPCLHSTIGKSSSNVRALT-YCDLHKIHRDDLLDVLDLYPE 376 (472)
Q Consensus 330 ~G~~fGe~~~l~~~~~~~~~~~~A~~-~~~l~~l~~~~f~~ll~~~p~ 376 (472)
+||-||..++..+ .||.++++.-+ +|-.+.+++.+|.+++++-..
T Consensus 1 eGddfgklalvnd--~praativl~ed~~~fl~vDk~~Fn~I~~~vEa 46 (573)
T KOG2378|consen 1 EGDDFGKLALVND--APRAATIVLREDNCHFLRVDKHDFNRILHDVEA 46 (573)
T ss_pred CCcccchhccccc--cccccceeeecCCCcceeecHHHHHHHHHhhhh
Confidence 5899999999855 88888877665 599999999999999876544
No 78
>KOG4440|consensus
Probab=39.06 E-value=35 Score=35.76 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=36.6
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQ 193 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~ 193 (472)
+||+++.+ ..-|-|.-+|.+-.-+++.+++.=+.+++-|.-.++++..+.
T Consensus 618 mWF~WGVL---LNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 618 MWFSWGVL---LNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred HHHHhHhh---hccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 44555556 677778889999999998888877777776666667766653
No 79
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=38.45 E-value=72 Score=28.07 Aligned_cols=57 Identities=7% Similarity=0.010 Sum_probs=37.8
Q ss_pred CCcCeEEEEEeeeEEEEEc--Ce-EEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhH
Q psy15517 303 DVLTSLYFISRGSIEILRD--DV-VMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDD 366 (472)
Q Consensus 303 ~~~~~ly~I~~G~v~v~~~--~~-~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~ 366 (472)
++.++++++++|.+.+... +. ....+++||.|=-- . .-+.+-++..+|..+.+.+..
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP-----~--gvpHsP~r~~~tv~LviE~~r 111 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLP-----P--HVPHSPQREAGSIGLVIERKR 111 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeC-----C--CCCcCCccCCCeEEEEEEeCC
Confidence 4578999999999887763 22 45679999876321 1 123333446778888886653
No 80
>PRK06771 hypothetical protein; Provisional
Probab=36.99 E-value=1.9e+02 Score=22.42 Aligned_cols=48 Identities=10% Similarity=0.211 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy15517 181 YASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEE 228 (472)
Q Consensus 181 ~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~ 228 (472)
+.|+...++.+....+.+..+.+.+++.+.+.+......+++.++++.
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 344555666665655556666677777776666544433334444444
No 81
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=35.29 E-value=88 Score=29.57 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=48.8
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcC-eEEEEeCCCCeecccc-cccCCCCcceeEEEEcceEEEEEecH
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-VVMAILGKDDIYGENP-CLHSTIGKSSSNVRALTYCDLHKIHR 364 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~G~~fGe~~-~l~~~~~~~~~~~~A~~~~~l~~l~~ 364 (472)
+....+.+|+.+-..-+.-+...++++|.+.+...+ ..-..-..-++|...+ +++ -+....+.+.|.++++++..+.
T Consensus 29 ~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lY-vp~g~~~~i~a~~~ae~~~~sa 107 (261)
T PF04962_consen 29 FGVLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALY-VPRGTKVVIFASTDAEFAVCSA 107 (261)
T ss_dssp CCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEE-E-TT--EEEEESSTEEEEEEEE
T ss_pred eEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEE-eCCCCeEEEEEcCCCEEEEEcc
Confidence 345567777777666555567778899999999876 4444445557775432 222 1244568888998999997765
Q ss_pred h
Q psy15517 365 D 365 (472)
Q Consensus 365 ~ 365 (472)
.
T Consensus 108 p 108 (261)
T PF04962_consen 108 P 108 (261)
T ss_dssp E
T ss_pred c
Confidence 3
No 82
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=34.70 E-value=1e+02 Score=24.68 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHh---c------CC---C-HHHHHhhCcHhHHHHHHHHHhHH
Q psy15517 217 QIPNPLRQRLEEYFQHAWTYT---N------GI---D-MNSVLKGFPECLQADICLHLNRN 264 (472)
Q Consensus 217 ~i~~~L~~ri~~y~~~~~~~~---~------~~---~-~~~ll~~Lp~~L~~~i~~~~~~~ 264 (472)
-+|.+++.+|..-....-... . .- + ..++|..||++||.+|.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 479999999854443211100 0 00 0 24799999999999998776554
No 83
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=33.24 E-value=87 Score=23.94 Aligned_cols=44 Identities=14% Similarity=0.326 Sum_probs=27.8
Q ss_pred cccCCCEEEecCCC--------cCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 291 HAPPGDTLVHKGDV--------LTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 291 ~~~~ge~I~~~G~~--------~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
.++.|-..+..|.. ..-.++|++|.|++..++... .+++|+.|=
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f-~v~~G~~F~ 62 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSF-VVTKGGSFQ 62 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEE-EEETT-EEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEE-EEeCCCEEE
Confidence 44555555555432 356889999999998877443 377787763
No 84
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=31.63 E-value=1.4e+02 Score=26.82 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=31.2
Q ss_pred cccccCCCEE---------EecCCCcCeEEEEEeeeEEEEEcC----eEEEEeCCCCeec
Q psy15517 289 TTHAPPGDTL---------VHKGDVLTSLYFISRGSIEILRDD----VVMAILGKDDIYG 335 (472)
Q Consensus 289 ~~~~~~ge~I---------~~~G~~~~~ly~I~~G~v~v~~~~----~~~~~l~~G~~fG 335 (472)
...+.||... +.+.....++|+|++|+..+...+ .....+.+|+.+=
T Consensus 72 ~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 72 TTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 4456777743 233333469999999998887643 3467789998653
No 85
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=31.53 E-value=1.4e+02 Score=31.00 Aligned_cols=68 Identities=10% Similarity=0.070 Sum_probs=40.8
Q ss_pred ccccCCCEEEe-cCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 290 THAPPGDTLVH-KGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 290 ~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
..+.||..+-. .....++.++|++|++++...+.. ..+++||.+-- +.+.++...-...++++++.+.
T Consensus 381 ~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~-~~l~~GDsi~i-----p~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 381 ITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDET-LLLTENESTYI-----PLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred EEECCCCccCccccCCCceEEEEEeeEEEEEECCEE-EEecCCCEEEE-----CCCCcEEEEcCCCCCEEEEEEE
Confidence 44566664321 122245677999999999887755 57999986542 2224444444445566665553
No 86
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=30.35 E-value=1.6e+02 Score=24.07 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=26.0
Q ss_pred CeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 306 TSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 306 ~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
++++-|++|.+.+..++.....+++||.|
T Consensus 64 ~E~chil~G~v~~T~d~Ge~v~~~aGD~~ 92 (116)
T COG3450 64 DEFCHILEGRVEVTPDGGEPVEVRAGDSF 92 (116)
T ss_pred ceEEEEEeeEEEEECCCCeEEEEcCCCEE
Confidence 78889999999999988888889999966
No 87
>KOG2302|consensus
Probab=28.57 E-value=8.8e+02 Score=27.79 Aligned_cols=19 Identities=32% Similarity=0.693 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q psy15517 19 TTLIGLLKTARLLRLVRVA 37 (472)
Q Consensus 19 ~~~~~llrl~rllrl~r~~ 37 (472)
++++|.||+.|+++|++..
T Consensus 1538 irimrvlriarvlkllkma 1556 (1956)
T KOG2302|consen 1538 IRIMRVLRIARVLKLLKMA 1556 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555543
No 88
>PRK11171 hypothetical protein; Provisional
Probab=28.24 E-value=2.4e+02 Score=26.66 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=38.2
Q ss_pred hcccccccCCCEEEec-CCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 286 KFKTTHAPPGDTLVHK-GDVLTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 286 ~~~~~~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
.+....++||..+-.. ....++.++|++|+..+..++ ....+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~-~~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNN-DWVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECC-EEEEeCCCCEEE
Confidence 4566788999888774 556689999999999997654 456699999653
No 89
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=28.22 E-value=2.7e+02 Score=27.38 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=53.9
Q ss_pred ccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHH
Q psy15517 290 THAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLD 369 (472)
Q Consensus 290 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ 369 (472)
+.+++|..--..-..+..+|+|++|+-.....+.. -..++||+|---+.- ..+-.+.+++.++.++-.-+.+
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig~~~-~~W~~gD~f~vPsW~-------~~~h~a~~da~Lf~~~D~Pll~ 326 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRIGDAV-FRFSPKDVFVVPSWH-------PVRFEASDDAVLFSFSDRPVQQ 326 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEECCEE-EEecCCCEEEECCCC-------cEecccCCCeEEEEecCHHHHH
Confidence 45677776666666789999999999888887764 458999998764331 1233445678899988887777
Q ss_pred HHh
Q psy15517 370 VLD 372 (472)
Q Consensus 370 ll~ 372 (472)
-|.
T Consensus 327 ~LG 329 (335)
T TIGR02272 327 KLG 329 (335)
T ss_pred Hhc
Confidence 654
No 90
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=26.68 E-value=1.9e+02 Score=30.04 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=41.4
Q ss_pred cccccCCCEEEec-CCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 289 TTHAPPGDTLVHK-GDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 289 ~~~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
...+.||...-.+ ....++.++|++|++.+...+.. ..+.+||.+= .+.+.++...-...++++++.+-
T Consensus 389 ~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~-~~L~~GDSi~-----ip~g~~H~~~N~g~~~l~iI~V~ 458 (478)
T PRK15460 389 RITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDI-KLLGENESIY-----IPLGATHCLENPGKIPLDLIEVR 458 (478)
T ss_pred EEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEE-EEecCCCEEE-----ECCCCcEEEEcCCCCCEEEEEEE
Confidence 3345565533111 12345888999999999887744 6689998652 22334555555555666666553
No 91
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=25.67 E-value=62 Score=34.80 Aligned_cols=41 Identities=15% Similarity=0.381 Sum_probs=35.0
Q ss_pred eeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15517 142 GFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIF 185 (472)
Q Consensus 142 yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~ii 185 (472)
+-.-.+. |+-||-||+...+.+.+.+++.+++++.+|..+.
T Consensus 216 ~~~~g~~---~GA~YTDI~~~lP~~~iL~aial~~aia~f~ai~ 256 (885)
T COG1615 216 SREHGTF---TGAGYTDINAQLPAKLILIAIALLCAIAFFSAIF 256 (885)
T ss_pred hcCCCcc---cccCceeeeeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666 9999999999999999999999999998887766
No 92
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=25.64 E-value=1.1e+02 Score=21.31 Aligned_cols=23 Identities=17% Similarity=0.556 Sum_probs=19.2
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHh
Q psy15517 215 FHQIPNPLRQRLEEYFQHAWTYT 237 (472)
Q Consensus 215 ~~~i~~~L~~ri~~y~~~~~~~~ 237 (472)
..++|.+|++.|.+|.+|..+..
T Consensus 8 fqkLPDdLKrEvldY~EfLlek~ 30 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEKK 30 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999987754
No 93
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=24.96 E-value=1.4e+02 Score=22.82 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=40.6
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEE
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHK 361 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~ 361 (472)
.....+.||..+=...-.+....+|++|...- .+ ..+.+|++.=+ . .....+..+.+.|.++.
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d--~~---~~~~~G~~~~~------p-~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELSD--GD---GRYGAGDWLRL------P-PGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEEE--TT---CEEETTEEEEE--------TTEEEEEEESSCEEEEE
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEEE--CC---ccCCCCeEEEe------C-CCCccccCcCCCEEEEE
Confidence 44567888888877666777888999999874 22 23477766533 1 23456667788888875
No 94
>KOG3300|consensus
Probab=24.70 E-value=1.9e+02 Score=23.96 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCcH
Q psy15517 207 LRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPE 251 (472)
Q Consensus 207 ~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~ 251 (472)
..+++|-.++-+-+-|+..=.+++-..+.. +-..|.+++++.|.
T Consensus 63 ~kiEd~~a~nai~PiL~AErDr~~l~~lrk-n~eeEaeiMKdVPg 106 (146)
T KOG3300|consen 63 LKIEDYAARNAILPILQAERDRRFLSELRK-NLEEEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hHHHHHHHHccCCC
Confidence 455566666666666666554444444443 22235567777763
No 95
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=23.33 E-value=1.3e+02 Score=18.34 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCC-----HHHHHHHHHHH
Q psy15517 206 MLRVREFIRFHQIP-----NPLRQRLEEYF 230 (472)
Q Consensus 206 ~~~i~~~m~~~~i~-----~~L~~ri~~y~ 230 (472)
..++.+.++..++| .+|++|+.+|+
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 34677788887777 56777877763
No 96
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=23.16 E-value=1.6e+02 Score=25.36 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=28.9
Q ss_pred EecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccc
Q psy15517 299 VHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENP 338 (472)
Q Consensus 299 ~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~ 338 (472)
..-....+++++|++|+..+...+ ....+++||+.|--+
T Consensus 58 ~H~Hs~edEfv~ILeGE~~l~~d~-~e~~lrpGD~~gFpA 96 (161)
T COG3837 58 RHWHSAEDEFVYILEGEGTLREDG-GETRLRPGDSAGFPA 96 (161)
T ss_pred ccccccCceEEEEEcCceEEEECC-eeEEecCCceeeccC
Confidence 333445689999999999886654 456799999988543
No 97
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=22.50 E-value=1.3e+02 Score=22.37 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=27.5
Q ss_pred HHHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhccc
Q psy15517 243 NSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKT 289 (472)
Q Consensus 243 ~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~ 289 (472)
.+++..||+++|.++...+. -+...+++.++.+-..++.
T Consensus 30 A~VL~~lp~e~r~~v~~Ria--------~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRIA--------RLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHHH--------TCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHH--------ccCCCCHHHHHHHHHHHHH
Confidence 46889999999888876543 3566788888887665543
No 98
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=22.18 E-value=1.8e+02 Score=25.78 Aligned_cols=22 Identities=5% Similarity=0.217 Sum_probs=18.1
Q ss_pred chhhHHHHHHHHHHHHHHHhCC
Q psy15517 196 YSGTARYHTQMLRVREFIRFHQ 217 (472)
Q Consensus 196 ~~~~~~~~~~~~~i~~~m~~~~ 217 (472)
+-.+..|.++++.+.+||+..+
T Consensus 22 dFde~~F~~rL~Vl~EYlkrtn 43 (183)
T PF08475_consen 22 DFDENEFDNRLQVLTEYLKRTN 43 (183)
T ss_pred ccchHHHHHHHHHHHHHHHhcC
Confidence 3457789999999999999744
No 99
>KOG3599|consensus
Probab=21.75 E-value=1.1e+03 Score=26.25 Aligned_cols=7 Identities=29% Similarity=0.790 Sum_probs=3.8
Q ss_pred CCCCCCC
Q psy15517 157 GNVAPNT 163 (472)
Q Consensus 157 Gdi~p~t 163 (472)
||..|..
T Consensus 637 G~~~~~~ 643 (798)
T KOG3599|consen 637 GDFCPAE 643 (798)
T ss_pred ccCCccc
Confidence 5665544
No 100
>KOG2301|consensus
Probab=21.14 E-value=2.6e+02 Score=33.74 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q psy15517 21 LIGLLKTARLLRLVRVARK 39 (472)
Q Consensus 21 ~~~llrl~rllrl~r~~~~ 39 (472)
.++.||.+|++|++|+.+.
T Consensus 529 g~svLr~frllRIfkl~k~ 547 (1592)
T KOG2301|consen 529 GLSVLRSFRLLRIFKLIKS 547 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 101
>KOG1054|consensus
Probab=21.03 E-value=72 Score=33.41 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=38.8
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQ 193 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~ 193 (472)
+||++... +--| -||.|.+...++..-++-++-.++.+.-.++++..+.
T Consensus 600 LWFsLgAF---MQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 600 LWFSLGAF---MQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred HHHHHHHH---HhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 88888877 5555 4999999999999988888777776666677776654
No 102
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=20.23 E-value=1.1e+02 Score=22.10 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q psy15517 216 HQIPNPLRQRLEEYFQHAWTYT 237 (472)
Q Consensus 216 ~~i~~~L~~ri~~y~~~~~~~~ 237 (472)
.++|++++..|.+|.++...+.
T Consensus 10 ~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 10 QQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999988765
Done!