Query psy15517
Match_columns 472
No_of_seqs 384 out of 3285
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 23:20:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 100.0 1.5E-34 5.1E-39 265.5 18.6 200 189-389 1-200 (212)
2 3beh_A MLL3241 protein; transm 100.0 6.6E-36 2.3E-40 296.2 6.5 269 2-389 77-349 (355)
3 2ptm_A Hyperpolarization-activ 100.0 3.8E-33 1.3E-37 253.3 21.3 192 194-388 2-194 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 5.1E-33 1.7E-37 253.3 20.4 196 193-391 2-197 (202)
5 4f8a_A Potassium voltage-gated 99.9 2.4E-23 8.3E-28 181.4 12.8 145 242-386 5-149 (160)
6 3ocp_A PRKG1 protein; serine/t 99.8 2.2E-20 7.4E-25 158.8 10.7 131 248-380 7-137 (139)
7 3mdp_A Cyclic nucleotide-bindi 99.8 6.3E-19 2.1E-23 150.0 14.4 126 263-390 5-138 (142)
8 2pqq_A Putative transcriptiona 99.8 1.2E-18 4E-23 149.5 15.4 133 263-397 4-141 (149)
9 3gyd_A CNMP-BD protein, cyclic 99.8 1.3E-18 4.5E-23 155.8 14.8 142 242-385 13-163 (187)
10 2z69_A DNR protein; beta barre 99.8 2.1E-18 7.2E-23 148.8 14.5 129 263-393 11-145 (154)
11 1vp6_A CNBD, cyclic-nucleotide 99.8 2.3E-18 8E-23 145.8 13.0 124 262-389 9-132 (138)
12 3pna_A CAMP-dependent protein 99.8 3.3E-18 1.1E-22 148.0 11.9 119 261-381 35-153 (154)
13 3fx3_A Cyclic nucleotide-bindi 99.8 3.3E-18 1.1E-22 159.0 12.2 195 261-463 8-207 (237)
14 3idb_B CAMP-dependent protein 99.8 1.6E-18 5.6E-23 151.1 9.2 122 259-382 33-158 (161)
15 1zyb_A Transcription regulator 99.8 1.2E-17 4.1E-22 154.8 15.4 190 262-461 16-213 (232)
16 3dn7_A Cyclic nucleotide bindi 99.7 3.8E-18 1.3E-22 153.5 10.7 131 263-395 6-142 (194)
17 4ev0_A Transcription regulator 99.7 6.6E-18 2.3E-22 154.5 11.6 128 266-395 1-133 (216)
18 3shr_A CGMP-dependent protein 99.7 1.8E-17 6.2E-22 159.6 13.8 137 244-382 19-155 (299)
19 3e97_A Transcriptional regulat 99.7 3.5E-17 1.2E-21 151.4 14.7 130 263-394 5-139 (231)
20 3d0s_A Transcriptional regulat 99.7 7E-18 2.4E-22 155.7 9.7 131 263-395 5-140 (227)
21 3dv8_A Transcriptional regulat 99.7 3E-17 1E-21 150.6 13.3 128 264-393 3-137 (220)
22 3dkw_A DNR protein; CRP-FNR, H 99.7 3.4E-18 1.2E-22 157.6 7.0 129 263-393 8-142 (227)
23 1orq_C Potassium channel; volt 99.7 9.4E-18 3.2E-22 154.5 9.9 137 2-194 75-220 (223)
24 3iwz_A CAP-like, catabolite ac 99.7 7.1E-17 2.4E-21 149.1 13.2 133 263-396 10-152 (230)
25 2d93_A RAP guanine nucleotide 99.7 7.9E-18 2.7E-22 142.0 5.4 116 259-376 11-128 (134)
26 2gau_A Transcriptional regulat 99.7 4.7E-17 1.6E-21 150.6 10.7 126 268-395 14-144 (232)
27 3shr_A CGMP-dependent protein 99.7 1.1E-16 3.7E-21 154.1 12.1 133 261-395 154-292 (299)
28 1wgp_A Probable cyclic nucleot 99.7 2.2E-17 7.4E-22 139.7 5.9 116 264-379 6-134 (137)
29 4ava_A Lysine acetyltransferas 99.7 2.1E-16 7E-21 154.7 13.7 125 263-390 12-140 (333)
30 3of1_A CAMP-dependent protein 99.7 1.5E-16 5E-21 148.4 11.0 122 262-385 5-126 (246)
31 3ryp_A Catabolite gene activat 99.7 1.8E-16 6E-21 144.3 10.8 124 270-395 2-131 (210)
32 2oz6_A Virulence factor regula 99.7 2.5E-16 8.5E-21 142.9 11.7 119 275-395 1-128 (207)
33 2qcs_B CAMP-dependent protein 99.7 5.5E-16 1.9E-20 148.5 14.6 125 260-386 35-159 (291)
34 1o5l_A Transcriptional regulat 99.6 3.5E-16 1.2E-20 142.9 10.2 126 269-395 4-134 (213)
35 3of1_A CAMP-dependent protein 99.6 5.8E-16 2E-20 144.3 11.8 118 261-380 122-240 (246)
36 4din_B CAMP-dependent protein 99.6 7.7E-16 2.7E-20 153.3 13.0 126 260-387 126-251 (381)
37 2a9h_A Voltage-gated potassium 99.6 1.8E-16 6.2E-21 135.7 7.2 58 135-199 87-144 (155)
38 2qcs_B CAMP-dependent protein 99.6 1.6E-15 5.6E-20 145.2 13.9 124 262-387 155-284 (291)
39 1ft9_A Carbon monoxide oxidati 99.6 1.1E-16 3.9E-21 147.1 5.5 123 265-396 1-127 (222)
40 2ih3_C Voltage-gated potassium 99.6 2.8E-16 9.4E-21 129.5 7.1 55 135-196 64-118 (122)
41 2fmy_A COOA, carbon monoxide o 99.6 3.6E-16 1.2E-20 143.4 7.8 124 264-396 4-131 (220)
42 4din_B CAMP-dependent protein 99.6 1.7E-15 5.7E-20 150.9 12.6 129 260-390 244-378 (381)
43 3kcc_A Catabolite gene activat 99.6 9E-16 3.1E-20 144.7 9.9 121 273-395 55-181 (260)
44 3e6c_C CPRK, cyclic nucleotide 99.6 4.2E-15 1.4E-19 139.2 11.3 130 265-399 10-144 (250)
45 3tnp_B CAMP-dependent protein 99.6 4.8E-15 1.7E-19 149.2 12.3 120 259-380 140-263 (416)
46 3tnp_B CAMP-dependent protein 99.6 4.2E-15 1.4E-19 149.6 11.2 127 262-390 265-402 (416)
47 1o7f_A CAMP-dependent RAP1 gua 99.6 4.8E-15 1.6E-19 151.9 10.7 131 249-382 27-164 (469)
48 3vou_A ION transport 2 domain 99.6 8.8E-15 3E-19 125.1 10.3 82 141-225 57-148 (148)
49 4h33_A LMO2059 protein; bilaye 99.6 1.2E-15 4.2E-20 128.2 4.8 90 135-231 46-135 (137)
50 1o7f_A CAMP-dependent RAP1 gua 99.6 7E-15 2.4E-19 150.6 11.4 124 261-386 334-460 (469)
51 3la7_A Global nitrogen regulat 99.6 2.2E-14 7.5E-19 133.7 12.6 119 277-395 30-156 (243)
52 2r9r_B Paddle chimera voltage 99.5 5.3E-15 1.8E-19 151.8 7.6 56 135-197 378-433 (514)
53 2bgc_A PRFA; bacterial infecti 99.5 6.5E-14 2.2E-18 130.0 12.8 121 273-396 2-132 (238)
54 4f7z_A RAP guanine nucleotide 99.5 1.4E-13 4.7E-18 153.6 12.8 118 260-380 38-162 (999)
55 3cf6_E RAP guanine nucleotide 99.5 1E-13 3.6E-18 147.4 10.6 129 251-381 19-150 (694)
56 3eff_K Voltage-gated potassium 99.4 1.2E-13 4E-18 116.9 7.7 54 135-195 43-96 (139)
57 3b02_A Transcriptional regulat 99.4 2.1E-13 7.3E-18 122.4 9.0 108 290-406 2-114 (195)
58 4f7z_A RAP guanine nucleotide 99.4 3E-12 1E-16 142.8 14.3 112 260-373 333-447 (999)
59 2k1e_A Water soluble analogue 99.4 7.6E-13 2.6E-17 105.5 6.7 55 135-196 43-97 (103)
60 2zcw_A TTHA1359, transcription 99.3 8.4E-13 2.9E-17 119.2 4.7 102 284-395 2-110 (202)
61 2q67_A Potassium channel prote 99.3 3.8E-12 1.3E-16 103.2 8.1 53 141-196 54-106 (114)
62 3pjs_K KCSA, voltage-gated pot 99.2 6.1E-14 2.1E-18 122.2 -7.9 59 133-198 68-126 (166)
63 3ouf_A Potassium channel prote 99.2 2.2E-11 7.4E-16 95.7 6.0 51 141-194 37-87 (97)
64 3ldc_A Calcium-gated potassium 99.2 3.5E-11 1.2E-15 91.4 6.5 49 141-192 33-81 (82)
65 1p7b_A Integral membrane chann 98.9 8.4E-10 2.9E-14 105.9 6.0 52 141-195 101-152 (333)
66 1xl4_A Inward rectifier potass 98.9 1.1E-09 3.7E-14 104.1 6.4 51 141-194 87-137 (301)
67 3um7_A Potassium channel subfa 98.8 5.4E-09 1.8E-13 98.9 5.5 55 133-194 116-170 (309)
68 2qks_A KIR3.1-prokaryotic KIR 98.7 1E-08 3.5E-13 98.1 6.5 52 141-195 83-134 (321)
69 4gx0_A TRKA domain protein; me 98.7 8.9E-09 3E-13 107.7 6.1 49 141-192 56-105 (565)
70 3sya_A G protein-activated inw 98.6 5.3E-08 1.8E-12 93.2 8.1 52 141-195 96-149 (340)
71 3um7_A Potassium channel subfa 98.6 6.4E-08 2.2E-12 91.5 6.5 58 135-199 227-290 (309)
72 3spc_A Inward-rectifier K+ cha 98.5 1.1E-07 3.9E-12 91.0 6.5 52 141-195 99-152 (343)
73 3rvy_A ION transport protein; 98.5 4.6E-08 1.6E-12 93.0 3.7 55 135-196 183-243 (285)
74 3ukm_A Potassium channel subfa 98.5 5.8E-08 2E-12 90.4 3.0 54 133-193 94-147 (280)
75 3ukm_A Potassium channel subfa 98.4 1.3E-07 4.6E-12 87.9 3.6 51 141-194 206-263 (280)
76 1lnq_A MTHK channels, potassiu 98.3 4.5E-08 1.5E-12 95.4 -2.8 53 135-194 48-100 (336)
77 4dxw_A Navrh, ION transport pr 97.0 0.0012 4.2E-08 60.0 6.8 50 141-193 170-224 (229)
78 2kyh_A KVAP, voltage-gated pot 92.9 0.1 3.5E-06 43.5 4.6 40 2-41 88-128 (147)
79 1ors_C Potassium channel; volt 91.1 0.3 1E-05 39.8 5.4 37 2-38 73-110 (132)
80 3fjs_A Uncharacterized protein 84.6 5 0.00017 31.2 8.5 66 288-361 39-104 (114)
81 2ozj_A Cupin 2, conserved barr 82.1 5 0.00017 31.0 7.6 64 291-362 44-107 (114)
82 3rns_A Cupin 2 conserved barre 82.0 5 0.00017 35.7 8.5 70 287-364 39-108 (227)
83 3lwc_A Uncharacterized protein 80.1 12 0.00041 29.4 9.2 66 289-362 44-109 (119)
84 3ibm_A Cupin 2, conserved barr 77.3 12 0.0004 31.4 8.9 87 289-381 60-157 (167)
85 1yhf_A Hypothetical protein SP 76.6 14 0.00047 28.3 8.6 67 288-362 43-109 (115)
86 2pfw_A Cupin 2, conserved barr 74.6 16 0.00054 28.0 8.5 67 288-362 37-103 (116)
87 3jzv_A Uncharacterized protein 74.0 8.8 0.0003 32.2 7.2 87 290-382 58-154 (166)
88 2fqp_A Hypothetical protein BP 73.9 4.7 0.00016 30.2 5.0 47 289-335 22-70 (97)
89 2a9h_A Voltage-gated potassium 73.8 2 6.9E-05 35.9 3.0 17 59-75 60-76 (155)
90 3h8u_A Uncharacterized conserv 73.6 7 0.00024 30.7 6.2 47 288-334 42-89 (125)
91 3es1_A Cupin 2, conserved barr 73.2 5.4 0.00018 33.9 5.6 69 288-362 82-150 (172)
92 1o5u_A Novel thermotoga mariti 70.2 33 0.0011 25.9 9.5 47 287-335 33-79 (101)
93 4e2g_A Cupin 2 conserved barre 69.3 18 0.00063 28.1 7.8 78 287-372 43-124 (126)
94 3kgz_A Cupin 2 conserved barre 68.1 11 0.00039 31.2 6.4 84 291-380 50-143 (156)
95 1v70_A Probable antibiotics sy 67.2 20 0.00068 26.4 7.4 46 288-334 31-77 (105)
96 2gu9_A Tetracenomycin polyketi 66.3 17 0.00057 27.5 6.8 46 288-334 24-72 (113)
97 2i45_A Hypothetical protein; n 65.7 6.8 0.00023 29.8 4.3 69 293-368 36-104 (107)
98 2bnm_A Epoxidase; oxidoreducta 64.7 11 0.00039 32.2 6.1 65 291-362 123-196 (198)
99 2pyt_A Ethanolamine utilizatio 64.3 21 0.00071 28.6 7.1 63 290-362 62-124 (133)
100 2f4p_A Hypothetical protein TM 64.1 14 0.00049 30.0 6.3 69 289-362 52-120 (147)
101 2b8m_A Hypothetical protein MJ 62.6 9.6 0.00033 29.4 4.8 44 291-334 33-76 (117)
102 1ors_C Potassium channel; volt 61.3 4.9 0.00017 32.4 2.8 19 20-38 95-113 (132)
103 3rns_A Cupin 2 conserved barre 61.0 27 0.00091 30.8 7.9 68 287-362 155-223 (227)
104 3bcw_A Uncharacterized protein 59.1 7.3 0.00025 30.9 3.4 44 291-335 55-98 (123)
105 4axo_A EUTQ, ethanolamine util 58.9 30 0.001 28.4 7.2 52 304-363 83-134 (151)
106 2vpv_A Protein MIF2, MIF2P; nu 58.4 18 0.00063 30.3 5.9 53 304-362 109-161 (166)
107 2qjv_A Uncharacterized IOLB-li 58.2 41 0.0014 30.5 8.6 79 285-365 29-111 (270)
108 4b29_A Dimethylsulfoniopropion 58.0 14 0.00048 32.4 5.2 43 292-334 139-181 (217)
109 3i7d_A Sugar phosphate isomera 58.0 17 0.00058 30.2 5.8 46 289-335 47-94 (163)
110 3es4_A Uncharacterized protein 57.6 8.7 0.0003 30.2 3.5 45 291-336 48-92 (116)
111 2q30_A Uncharacterized protein 56.3 41 0.0014 25.0 7.5 67 289-362 37-105 (110)
112 3l2h_A Putative sugar phosphat 55.5 17 0.00057 30.0 5.3 45 289-334 50-96 (162)
113 1orq_C Potassium channel; volt 54.8 13 0.00044 32.7 4.7 10 64-73 166-175 (223)
114 2kyh_A KVAP, voltage-gated pot 53.8 7.3 0.00025 32.1 2.6 20 22-41 106-125 (147)
115 3kg2_A Glutamate receptor 2; I 53.5 8.5 0.00029 41.2 3.9 50 141-194 568-617 (823)
116 3d0j_A Uncharacterized protein 53.3 40 0.0014 27.2 6.8 60 299-365 44-110 (140)
117 1vj2_A Novel manganese-contain 53.2 21 0.0007 28.0 5.3 45 289-334 52-96 (126)
118 1y9q_A Transcriptional regulat 53.0 34 0.0012 28.9 7.1 44 290-334 109-154 (192)
119 1sfn_A Conserved hypothetical 52.6 36 0.0012 30.4 7.4 71 285-361 165-236 (246)
120 1sfn_A Conserved hypothetical 52.4 50 0.0017 29.4 8.3 65 289-363 54-118 (246)
121 1o4t_A Putative oxalate decarb 52.1 27 0.00093 27.7 5.9 45 289-334 61-106 (133)
122 3h7j_A Bacilysin biosynthesis 51.6 34 0.0012 30.5 7.0 46 289-335 149-195 (243)
123 2opk_A Hypothetical protein; p 51.3 30 0.001 26.5 5.8 33 303-335 51-84 (112)
124 4i4a_A Similar to unknown prot 51.0 64 0.0022 24.8 8.0 77 290-372 39-117 (128)
125 3h7j_A Bacilysin biosynthesis 48.1 41 0.0014 29.8 7.0 72 287-363 36-107 (243)
126 3d82_A Cupin 2, conserved barr 48.0 37 0.0013 24.9 5.8 51 306-364 51-101 (102)
127 3cew_A Uncharacterized cupin p 47.3 40 0.0014 26.1 6.1 45 289-334 30-76 (125)
128 1dgw_A Canavalin; duplicated s 46.9 17 0.00058 30.8 4.0 49 287-335 43-94 (178)
129 4e2q_A Ureidoglycine aminohydr 46.8 23 0.00077 32.3 5.0 69 289-365 74-143 (266)
130 4dxw_A Navrh, ION transport pr 45.1 12 0.0004 33.2 2.8 51 21-71 100-153 (229)
131 2r9r_B Paddle chimera voltage 43.5 19 0.00066 36.3 4.4 71 2-72 277-364 (514)
132 2oa2_A BH2720 protein; 1017534 43.2 48 0.0016 26.7 6.2 46 289-334 47-98 (148)
133 1zvf_A 3-hydroxyanthranilate 3 42.1 40 0.0014 28.4 5.3 55 304-365 53-114 (176)
134 1lr5_A Auxin binding protein 1 41.4 39 0.0013 27.7 5.4 46 289-334 45-98 (163)
135 1yfu_A 3-hydroxyanthranilate-3 40.6 37 0.0013 28.6 4.9 55 304-365 54-112 (174)
136 2o1q_A Putative acetyl/propion 35.7 31 0.0011 28.0 3.7 69 287-362 46-116 (145)
137 3ht1_A REMF protein; cupin fol 35.4 38 0.0013 26.9 4.3 29 305-334 59-89 (145)
138 1juh_A Quercetin 2,3-dioxygena 35.4 88 0.003 29.5 7.5 70 295-371 262-334 (350)
139 1sq4_A GLXB, glyoxylate-induce 35.0 38 0.0013 30.9 4.6 69 289-363 72-142 (278)
140 1rc6_A Hypothetical protein YL 34.8 56 0.0019 29.3 5.7 69 289-363 63-133 (261)
141 1sef_A Conserved hypothetical 34.3 1E+02 0.0035 27.8 7.5 70 287-362 184-255 (274)
142 3nw4_A Gentisate 1,2-dioxygena 34.1 93 0.0032 29.7 7.3 75 290-372 284-358 (368)
143 2o8q_A Hypothetical protein; c 34.0 49 0.0017 25.9 4.7 30 305-334 64-93 (134)
144 3bu7_A Gentisate 1,2-dioxygena 33.6 26 0.0009 33.9 3.4 48 288-335 126-173 (394)
145 2d40_A Z3393, putative gentisa 33.2 55 0.0019 31.1 5.6 74 289-368 104-178 (354)
146 2vec_A YHAK, pirin-like protei 32.9 1.9E+02 0.0065 25.9 8.8 67 291-364 188-254 (256)
147 3myx_A Uncharacterized protein 31.9 52 0.0018 29.3 4.8 31 305-335 186-216 (238)
148 2qnk_A 3-hydroxyanthranilate 3 31.5 62 0.0021 29.5 5.2 57 302-365 48-107 (286)
149 2qnk_A 3-hydroxyanthranilate 3 31.5 1.2E+02 0.004 27.7 7.0 69 288-365 210-278 (286)
150 2vqa_A SLL1358 protein, MNCA; 31.4 94 0.0032 29.2 7.0 49 287-335 236-289 (361)
151 2ih3_C Voltage-gated potassium 31.0 55 0.0019 25.6 4.4 12 62-73 40-51 (122)
152 3beh_A MLL3241 protein; transm 29.9 25 0.00084 33.3 2.5 15 19-33 97-111 (355)
153 1x82_A Glucose-6-phosphate iso 29.9 81 0.0028 26.7 5.6 29 306-334 97-129 (190)
154 1fi2_A Oxalate oxidase, germin 29.5 71 0.0024 27.3 5.3 49 287-335 74-130 (201)
155 1uij_A Beta subunit of beta co 28.5 49 0.0017 32.3 4.4 49 286-334 50-101 (416)
156 1sef_A Conserved hypothetical 28.4 65 0.0022 29.2 5.0 68 290-363 67-136 (274)
157 1y3t_A Hypothetical protein YX 28.2 81 0.0028 29.2 5.9 45 289-334 50-95 (337)
158 1j58_A YVRK protein; cupin, de 28.1 1.2E+02 0.0042 28.7 7.2 71 288-363 260-335 (385)
159 3bu7_A Gentisate 1,2-dioxygena 26.7 1.1E+02 0.0037 29.6 6.4 78 288-371 297-375 (394)
160 2vqa_A SLL1358 protein, MNCA; 26.7 1.4E+02 0.0048 28.0 7.3 46 289-334 56-106 (361)
161 2q1z_B Anti-sigma factor CHRR, 26.0 83 0.0028 26.9 5.0 65 286-362 126-192 (195)
162 1sq4_A GLXB, glyoxylate-induce 25.9 80 0.0027 28.7 5.1 50 285-335 191-241 (278)
163 2xp1_A SPT6; transcription, IW 24.4 1.2E+02 0.004 25.7 5.4 39 267-311 12-50 (178)
164 2d40_A Z3393, putative gentisa 24.3 1.9E+02 0.0066 27.2 7.7 75 289-371 272-346 (354)
165 1rc6_A Hypothetical protein YL 23.3 92 0.0031 27.8 5.0 47 287-334 181-228 (261)
166 2lcm_A Voltage-dependent N-typ 23.1 94 0.0032 17.4 3.1 17 21-37 5-21 (28)
167 3nw4_A Gentisate 1,2-dioxygena 23.0 63 0.0022 30.8 3.9 47 288-335 106-153 (368)
168 2cav_A Protein (canavalin); vi 22.2 69 0.0024 31.5 4.1 50 286-335 87-139 (445)
169 3myx_A Uncharacterized protein 22.1 93 0.0032 27.6 4.6 54 304-365 64-117 (238)
170 2kwv_A RAD30 homolog B, DNA po 21.3 41 0.0014 21.3 1.4 17 243-259 18-34 (48)
171 1j58_A YVRK protein; cupin, de 21.2 1.1E+02 0.0036 29.2 5.2 47 288-334 82-132 (385)
172 2ea7_A 7S globulin-1; beta bar 21.0 80 0.0027 30.9 4.3 49 286-334 62-113 (434)
173 2db7_A Hairy/enhancer-OF-split 20.7 2.1E+02 0.0071 19.5 5.1 36 200-235 22-60 (64)
174 3rvy_A ION transport protein; 20.5 1.2E+02 0.0042 27.3 5.3 22 20-41 114-135 (285)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=1.5e-34 Score=265.49 Aligned_cols=200 Identities=45% Similarity=0.831 Sum_probs=180.0
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHHhhcc
Q psy15517 189 SAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLNRNLLSN 268 (472)
Q Consensus 189 ~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~ 268 (472)
++++++++++..+|+++|..+++||+.+++|++|+.||++||+|.|..+++.+++++++.||++|+.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 457888999999999999999999999999999999999999999998889999999999999999999999998877 8
Q ss_pred CccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcce
Q psy15517 269 CSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSS 348 (472)
Q Consensus 269 ~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~ 348 (472)
+|+|++++++++..++..++++.|+|||+|+++||+++++|||.+|.|+++.++..+..+++|++|||.+++.+...+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~~~~~~ 159 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTN 159 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSSSCCBBC
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcCcHHhccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999965211899
Q ss_pred eEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15517 349 SNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITF 389 (472)
Q Consensus 349 ~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~ 389 (472)
++|+|.++|+++.|++++|.++++.+|++...+.+.+..++
T Consensus 160 ~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 160 ANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred eEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887654
No 2
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=6.6e-36 Score=296.21 Aligned_cols=269 Identities=17% Similarity=0.265 Sum_probs=96.5
Q ss_pred cccccc-cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy15517 2 SEYHEI-LSKDFFFLQRTTTLIGLLKTARLLRLVRVARKIDRYS---EYGAAVLLLLMATFALIAHWLACIWYAIGNAEK 77 (472)
Q Consensus 2 ~~~~~~-~P~~~~~~~~~~~~~~llrl~rllrl~r~~~~i~~~~---~~~~~~l~~l~~~~~~~~H~~aC~~~~i~~~~~ 77 (472)
.|+.++ +|+..+.. ...+.+|++|++|++|+.|..+.++.+. ......+..+++.++++.|++||++|.+....+
T Consensus 77 ~Dl~~i~~p~~~~~~-~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~ 155 (355)
T 3beh_A 77 IDVLAVLVPLAAFLL-DGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQ 155 (355)
T ss_dssp HHHHHHHHHHHHHHS-CCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 356676 57655322 1223455556666666655543333322 223334666677777889999999999863211
Q ss_pred cccccccccccccccccccCCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccceeeeeccccceeeecC
Q psy15517 78 SSVGWLDILANDTHQFYINGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGGFNFKHLYLRTSVGFG 157 (472)
Q Consensus 78 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~yw~~~tl~~~ttvGyG 157 (472)
+ +.+..|..| +||+++|+ ||||||
T Consensus 156 ~-------------------------------------------------~~f~~~~~s----~y~~~~t~---ttvGyg 179 (355)
T 3beh_A 156 P-------------------------------------------------EKFGSIPQA----MWWAVVTL---STTGYG 179 (355)
T ss_dssp H-------------------------------------------------HHHSSHHHH----HHHHHHHH---TTCCCS
T ss_pred C-------------------------------------------------cccccHHHH----HHHHHhhe---eecCCC
Confidence 0 011123378 99999999 999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q psy15517 158 NVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYT 237 (472)
Q Consensus 158 di~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~~ 237 (472)
|+.|.|+.|++++++++++|++++++.+|.+++.+.+.. ++ +++.
T Consensus 180 d~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~------~~----------------------~~~~------- 224 (355)
T 3beh_A 180 DTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV------RR----------------------GDFV------- 224 (355)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH----------------------HHHH-------
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH----------------------Hhhc-------
Confidence 999999999999999999999999999999987765311 00 0000
Q ss_pred cCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEE
Q psy15517 238 NGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIE 317 (472)
Q Consensus 238 ~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 317 (472)
-..+.++++|+|+++++++++.++..++.+.++|||.|+++||+++++|+|.+|.|+
T Consensus 225 -----------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 281 (355)
T 3beh_A 225 -----------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVS 281 (355)
T ss_dssp -----------------------HHHC-----------------------------------------------------
T ss_pred -----------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEE
Confidence 023678899999999999999999999999999999999999999999999999999
Q ss_pred EEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15517 318 ILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITF 389 (472)
Q Consensus 318 v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~ 389 (472)
++..+ ...+++|++|||.+++.+ .+++++++|.++|+++.+++++|.++++++|++...+.+.++.+.
T Consensus 282 v~~~~--~~~l~~G~~fGe~~~l~~--~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl 349 (355)
T 3beh_A 282 VATPN--PVELGPGAFFGEMALISG--EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 349 (355)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEECC--eeEECCCCEEeehHHhCC--CCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 98766 468999999999999855 789999999999999999999999999999999999988877654
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=3.8e-33 Score=253.29 Aligned_cols=192 Identities=20% Similarity=0.437 Sum_probs=180.3
Q ss_pred hcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCcccc
Q psy15517 194 RLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAFK 273 (472)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~ 273 (472)
+++++..+|++++..+++||+.+++|.+|+.||++|++|.|.. ++.+++++++.||++||.++..+.+.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 5678899999999999999999999999999999999999984 788899999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-cCeEEEEeCCCCeecccccccCCCCcceeEEE
Q psy15517 274 GASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-DDVVMAILGKDDIYGENPCLHSTIGKSSSNVR 352 (472)
Q Consensus 274 ~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~ 352 (472)
+++++++..++..++++.|+|||+|+++|++++++|||.+|.|+++. ++..+..+++|++||+.+++.+ .+++++|+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~--~~~~~~~~ 158 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTR--ERRVASVK 158 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHS--SCCSSEEE
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcCC--CccceEEE
Confidence 99999999999999999999999999999999999999999999996 4468899999999999999965 78999999
Q ss_pred EcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHH
Q psy15517 353 ALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEIT 388 (472)
Q Consensus 353 A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~ 388 (472)
|.++|+++.|++++|.++++++|++...+.+.+..+
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r 194 (198)
T 2ptm_A 159 CETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR 194 (198)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred EeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877643
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=100.00 E-value=5.1e-33 Score=253.32 Aligned_cols=196 Identities=26% Similarity=0.469 Sum_probs=181.9
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhhCcHhHHHHHHHHHhHHhhccCccc
Q psy15517 193 QRLYSGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQADICLHLNRNLLSNCSAF 272 (472)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~L~~ri~~y~~~~~~~~~~~~~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F 272 (472)
++++.+..+|++++..+++||+.+++|++|+.||++|++|.|.. ++.+++++++.||++|+.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 35778899999999999999999999999999999999999984 78899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEE
Q psy15517 273 KGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVR 352 (472)
Q Consensus 273 ~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~ 352 (472)
.+++++++..++..++++.|+||++|+++|++++++|||.+|.|+++..+.....+++|++||+.+++.+ .+++++|+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~~--~~~~~~v~ 158 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR--GRRTASVR 158 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHHHC--SBCSSEEE
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHHHhcC--CCcccEEE
Confidence 9999999999999999999999999999999999999999999999876544557999999999999965 78999999
Q ss_pred EcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHh
Q psy15517 353 ALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYM 391 (472)
Q Consensus 353 A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~ 391 (472)
|.++|+++.|++++|.++++.+|++...+.+.+..++..
T Consensus 159 a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 159 ADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 197 (202)
T ss_dssp ESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred EeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988776643
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.90 E-value=2.4e-23 Score=181.43 Aligned_cols=145 Identities=48% Similarity=0.854 Sum_probs=128.9
Q ss_pred HHHHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc
Q psy15517 242 MNSVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321 (472)
Q Consensus 242 ~~~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~ 321 (472)
.+++++.||++||.++..+++.++++++|+|++++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.+
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHH
Q psy15517 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLE 386 (472)
Q Consensus 322 ~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~ 386 (472)
+..+..+++|++||+.+++.++..+++++++|.++|+++.|++++|.++++++|++...+.+.++
T Consensus 85 ~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 149 (160)
T 4f8a_A 85 DEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLI 149 (160)
T ss_dssp TEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCC
T ss_pred CEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986433589999999999999999999999999999999999887774
No 6
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.83 E-value=2.2e-20 Score=158.83 Aligned_cols=131 Identities=15% Similarity=0.246 Sum_probs=118.5
Q ss_pred hCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEE
Q psy15517 248 GFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAI 327 (472)
Q Consensus 248 ~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~ 327 (472)
++|+.++.+...+...++++++|+|++++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|++..++..+..
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~ 86 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCT 86 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEEE
Confidence 57888888888888899999999999999999999999999999999999999999999999999999999998899999
Q ss_pred eCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHH
Q psy15517 328 LGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNS 380 (472)
Q Consensus 328 l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~ 380 (472)
+++|++||+.+++.+ .+++++++|.++|+++.|++++|.++++++|.+.+.
T Consensus 87 ~~~G~~fGe~~~l~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 87 MGPGKVFGELAILYN--CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp ECTTCEESCHHHHHC--CCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred eCCCCEeccHHHHCC--CCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 999999999998865 789999999999999999999999999999998765
No 7
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.80 E-value=6.3e-19 Score=149.98 Aligned_cols=126 Identities=13% Similarity=0.212 Sum_probs=114.5
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeE---EEEeCCCCee
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVV---MAILGKDDIY 334 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~---~~~l~~G~~f 334 (472)
.+.++++|+|++++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++. ++.. +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 3578999999999999999999999999999999999999999999999999999986 2355 8999999999
Q ss_pred cccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15517 335 GENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFY 390 (472)
Q Consensus 335 Ge~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~ 390 (472)
|+.+++.+ .+++++++|.++|+++.|++++|.++++++|++...+.+.+...+.
T Consensus 85 G~~~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 138 (142)
T 3mdp_A 85 GVSSLIKP--YHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVL 138 (142)
T ss_dssp CGGGSSTT--CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred chHHHcCC--CCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 99999954 7899999999999999999999999999999999999988876553
No 8
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.80 E-value=1.2e-18 Score=149.51 Aligned_cols=133 Identities=21% Similarity=0.360 Sum_probs=120.3
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeeccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGEN 337 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~ 337 (472)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. +..+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 35789999999999999999999999999999999999999999999999999999862 2578999999999999
Q ss_pred ccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhh
Q psy15517 338 PCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQA 397 (472)
Q Consensus 338 ~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~ 397 (472)
+++.+ .++.++++|.++|+++.|++++|.++++++|++...+.+.+..++........
T Consensus 84 ~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~ 141 (149)
T 2pqq_A 84 SLFDP--GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTNDAMS 141 (149)
T ss_dssp GGTSC--EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhcCC--CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 98854 78999999999999999999999999999999999999999877765554443
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.79 E-value=1.3e-18 Score=155.77 Aligned_cols=142 Identities=23% Similarity=0.261 Sum_probs=122.5
Q ss_pred HHHHHhhCcHhHH----HHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEE
Q psy15517 242 MNSVLKGFPECLQ----ADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIE 317 (472)
Q Consensus 242 ~~~ll~~Lp~~L~----~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~ 317 (472)
+..+.+.++|++- .+...+...+.++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 3445555554432 333445567799999999999999999999999999999999999999999999999999999
Q ss_pred EEEc-----CeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHH
Q psy15517 318 ILRD-----DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385 (472)
Q Consensus 318 v~~~-----~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l 385 (472)
++.. +..+..+++|++||+.+++.+ .+++++++|.++|+++.|++++|.++++++|++...+.+.+
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~--~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 163 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIGEMSMIDG--MPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRL 163 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEESHHHHHHC--CCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred EEEECCCCCeEEEEEccCCCeeeeHHHhCC--CCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHH
Confidence 9873 268899999999999998865 78999999999999999999999999999999998888443
No 10
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.78 E-value=2.1e-18 Score=148.85 Aligned_cols=129 Identities=16% Similarity=0.265 Sum_probs=117.1
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeeccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGEN 337 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~ 337 (472)
.+.++++++|..++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++. ++.++..+++|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 4678999999999999999999999999999999999999999999999999999985 23578899999999999
Q ss_pred ccccCCCCc-ceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhh
Q psy15517 338 PCLHSTIGK-SSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRD 393 (472)
Q Consensus 338 ~~l~~~~~~-~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~ 393 (472)
+++.+ .+ +.++++|.++|+++.|++++|.++++++|++...+.+.+..++....
T Consensus 91 ~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~~~ 145 (154)
T 2z69_A 91 MMFMD--TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI 145 (154)
T ss_dssp GGGSS--CSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTCCS
T ss_pred hhccC--CCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 99854 66 89999999999999999999999999999999999999887665443
No 11
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.77 E-value=2.3e-18 Score=145.80 Aligned_cols=124 Identities=20% Similarity=0.340 Sum_probs=115.0
Q ss_pred hHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeeccccccc
Q psy15517 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLH 341 (472)
Q Consensus 262 ~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~ 341 (472)
..+.++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ ...+++|++||+.+++.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~G~~~G~~~~~~ 86 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALIS 86 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--CEEECTTCEECHHHHHH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--cceECCCCEeeehHhcc
Confidence 3467999999999999999999999999999999999999999999999999999998765 45899999999999886
Q ss_pred CCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHH
Q psy15517 342 STIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITF 389 (472)
Q Consensus 342 ~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~ 389 (472)
+ .+++++++|.++|+++.|++++|.++++++|++...+.+.+..++
T Consensus 87 ~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 87 G--EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp C--CCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred C--CCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 5 688999999999999999999999999999999999998887654
No 12
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.76 E-value=3.3e-18 Score=148.01 Aligned_cols=119 Identities=16% Similarity=0.197 Sum_probs=110.2
Q ss_pred HhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccc
Q psy15517 261 LNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCL 340 (472)
Q Consensus 261 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l 340 (472)
...++++++|+|.+++++.+..++..++.+.|++|++|+++|++++++|+|.+|.|+++.++..+..+++|++||+.+++
T Consensus 35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fGe~~~~ 114 (154)
T 3pna_A 35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALI 114 (154)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTCEECCHHHH
T ss_pred HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCEEEEEecCCCEeeehHhh
Confidence 34568899999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHH
Q psy15517 341 HSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381 (472)
Q Consensus 341 ~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~ 381 (472)
.+ .++.++++|.++|+++.|++++|.++++++|.....+
T Consensus 115 ~~--~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 115 YG--TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp HC--CCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred cC--CCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 65 7889999999999999999999999999999877553
No 13
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.76 E-value=3.3e-18 Score=158.98 Aligned_cols=195 Identities=13% Similarity=0.142 Sum_probs=145.7
Q ss_pred HhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeec
Q psy15517 261 LNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYG 335 (472)
Q Consensus 261 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fG 335 (472)
...++|+++|+|.+++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +.++..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 3457899999999999999999999999999999999999999999999999999999872 26889999999999
Q ss_pred ccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhhCCCCccccccccccCCCC
Q psy15517 336 ENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQAGVDPRCGRHSRRRSGSSS 415 (472)
Q Consensus 336 e~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (472)
+.+++.+ .+++++++|.++|+++.|++++|.+++.++|++...+.+.+..++.........+....+..++.......
T Consensus 88 ~~~~~~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~~ 165 (237)
T 3fx3_A 88 EAVALRN--TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQRVAEFLLEL 165 (237)
T ss_dssp HHHHHHT--CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred hHHHhcC--CCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999854 78999999999999999999999999999999999999999887766655554444444444333221111
Q ss_pred CCCCceeecCCCceeeeeccCCCCchhhccCCcccHHHHHHHHhhhhc
Q psy15517 416 NDRPTVDVGGGGGLEIDIRRFPSRPARTRAFNQDSMESAAAAMFQDVM 463 (472)
Q Consensus 416 ~~~~~~~~~~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 463 (472)
.... ++...+...-.....+..-++..+.+.++-..+-++.+
T Consensus 166 ~~~~------~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 166 CDCD------TGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp CCC-----------EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred hhhc------CCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 1000 01112222222223455555666666666655555444
No 14
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.75 E-value=1.6e-18 Score=151.11 Aligned_cols=122 Identities=13% Similarity=0.173 Sum_probs=111.4
Q ss_pred HHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc----CeEEEEeCCCCee
Q psy15517 259 LHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD----DVVMAILGKDDIY 334 (472)
Q Consensus 259 ~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~----~~~~~~l~~G~~f 334 (472)
.....++|+++|+|++++++.+..++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +..+..+++|++|
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~f 112 (161)
T 3idb_B 33 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF 112 (161)
T ss_dssp HHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEE
T ss_pred HHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEe
Confidence 345567899999999999999999999999999999999999999999999999999999862 3688899999999
Q ss_pred cccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHH
Q psy15517 335 GENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFT 382 (472)
Q Consensus 335 Ge~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~ 382 (472)
|+.+++.+ .+++++++|.++|+++.|++++|.++++++|.+...+.
T Consensus 113 Ge~~~~~~--~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 158 (161)
T 3idb_B 113 GELALMYN--TPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 158 (161)
T ss_dssp CGGGGTCC--CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC-
T ss_pred chHHHHcC--CCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 99999964 78999999999999999999999999999999876544
No 15
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.75 E-value=1.2e-17 Score=154.79 Aligned_cols=190 Identities=15% Similarity=0.073 Sum_probs=146.6
Q ss_pred hHHhhccCccccCCCHHHHHHHhhh--cccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCee
Q psy15517 262 NRNLLSNCSAFKGASPGCLRALSLK--FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIY 334 (472)
Q Consensus 262 ~~~~l~~~~~F~~~~~~~l~~l~~~--~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~f 334 (472)
....++++|+|.+++++.++.++.. ++.+.|++|++|+++|++++.+|+|.+|.|+++. ++.++..+++|++|
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence 3467899999999999999999998 9999999999999999999999999999999986 23788999999999
Q ss_pred cccccccCCCCc-ceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhhCCCCccccccccccCC
Q psy15517 335 GENPCLHSTIGK-SSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQAGVDPRCGRHSRRRSGS 413 (472)
Q Consensus 335 Ge~~~l~~~~~~-~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (472)
|+.+++.+ .+ ++++++|.++|+++.|++++|.+++.++|++...+.+.+..++.........+....+..++.....
T Consensus 96 G~~~~~~~--~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~ 173 (232)
T 1zyb_A 96 EPQSLFGM--NTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFL 173 (232)
T ss_dssp CGGGGSSS--CCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHHH
T ss_pred eehHHhCC--CCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 99999864 56 8999999999999999999999999999999999999998887776666655555555554443222
Q ss_pred CCCCCCceeecCCCceeeeeccCCCCchhhccCCcccHHHHHHHHhhh
Q psy15517 414 SSNDRPTVDVGGGGGLEIDIRRFPSRPARTRAFNQDSMESAAAAMFQD 461 (472)
Q Consensus 414 ~~~~~~~~~~~~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~q~ 461 (472)
.....+ ++.+.+. -.....+..-++..+.+.++...+-++
T Consensus 174 ~l~~~~------~~~~~~~--~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 174 SHCEKP------QGEKTFK--VKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp TTCSSS------SSCEEEE--CCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHhhc------CCeEEec--CCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 221111 1122222 222233455556666666665555433
No 16
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.75 E-value=3.8e-18 Score=153.46 Aligned_cols=131 Identities=13% Similarity=0.204 Sum_probs=117.3
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeeccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGEN 337 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~ 337 (472)
..+++.+|.|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++.. +.++..+++|++|||.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 45778899999999999999999999999999999999999999999999999999862 3678899999999998
Q ss_pred -ccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 338 -PCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 338 -~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
+++.+ .+++++++|.++|+++.|++++|.++++++|++...+.+.++.++......
T Consensus 86 ~~~~~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 142 (194)
T 3dn7_A 86 MAFQKQ--QPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLR 142 (194)
T ss_dssp HHHHHT--CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC--CCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 55644 789999999999999999999999999999999999998887766544433
No 17
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.74 E-value=6.6e-18 Score=154.48 Aligned_cols=128 Identities=23% Similarity=0.436 Sum_probs=114.7
Q ss_pred hccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccc
Q psy15517 266 LSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCL 340 (472)
Q Consensus 266 l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l 340 (472)
|+++|+|++++++.++.+...++.+.|++|++|+++|++++++|+|.+|.|+++.. +.++..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 56899999999999999999999999999999999999999999999999999862 2588999999999999988
Q ss_pred cCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 341 HSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 341 ~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
.+ .+++++++|.++|+++.+++++|.+++.++|++...+.+.+..++......
T Consensus 81 ~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~ 133 (216)
T 4ev0_A 81 DE--GERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLE 133 (216)
T ss_dssp HC--CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--CCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 65 789999999999999999999999999999999999998887766554433
No 18
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.73 E-value=1.8e-17 Score=159.63 Aligned_cols=137 Identities=14% Similarity=0.247 Sum_probs=126.5
Q ss_pred HHHhhCcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCe
Q psy15517 244 SVLKGFPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDV 323 (472)
Q Consensus 244 ~ll~~Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~ 323 (472)
....++|+..|.+...+...+.++++++|++++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|++..++.
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~ 98 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV 98 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTE
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred EEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHH
Q psy15517 324 VMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFT 382 (472)
Q Consensus 324 ~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~ 382 (472)
.+..+.+|++|||.+++.+ .+++++++|.++|+++.|++++|.+++..+|.......
T Consensus 99 ~~~~~~~G~~fGe~~ll~~--~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~ 155 (299)
T 3shr_A 99 KLCTMGPGKVFGELAILYN--CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY 155 (299)
T ss_dssp EEEEECTTCEESCSGGGTT--TBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCeeeHhHHhcC--CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHH
Confidence 9999999999999999965 89999999999999999999999999999998765433
No 19
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.73 E-value=3.5e-17 Score=151.41 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=118.7
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeeccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGEN 337 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~ 337 (472)
.++|+++|+|.+++++.+..++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +.++..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 35789999999999999999999999999999999999999999999999999999863 2678999999999999
Q ss_pred ccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhh
Q psy15517 338 PCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDE 394 (472)
Q Consensus 338 ~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~ 394 (472)
+++.+ .+++++++|.++|+++.|++++|.+++.++|++...+.+.+..++.....
T Consensus 85 ~~~~~--~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~ 139 (231)
T 3e97_A 85 AVLAH--QERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLND 139 (231)
T ss_dssp TTTCC--CCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCC--CCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 99865 78999999999999999999999999999999999999888766654433
No 20
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.73 E-value=7e-18 Score=155.69 Aligned_cols=131 Identities=23% Similarity=0.429 Sum_probs=119.2
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeeccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGEN 337 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~ 337 (472)
.+.++++|+|.+++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +.++..+++|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 35789999999999999999999999999999999999999999999999999999862 2678999999999999
Q ss_pred ccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 338 PCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 338 ~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
+++.+ .+++++++|.++|+++.|++++|.+++.++|++...+.+.+..++......
T Consensus 85 ~~~~~--~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 140 (227)
T 3d0s_A 85 SIFDP--GPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNN 140 (227)
T ss_dssp HHHSC--SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCC--CCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 99864 789999999999999999999999999999999999999987766554443
No 21
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.72 E-value=3e-17 Score=150.57 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=115.8
Q ss_pred HhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCe--ecc
Q psy15517 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDI--YGE 336 (472)
Q Consensus 264 ~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~--fGe 336 (472)
++++++|+|.+++++.++.+...++.+.|++|++|+++|++++++|+|.+|.|+++. ++.++..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578999999999999999999999999999999999999999999999999999986 2367899999999 799
Q ss_pred cccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhh
Q psy15517 337 NPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRD 393 (472)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~ 393 (472)
.+++.+ .+++++++|.++|+++.+++++|.+++.++|++...+.+.+..++....
T Consensus 83 ~~~~~~--~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 137 (220)
T 3dv8_A 83 SCIMRS--IQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVM 137 (220)
T ss_dssp GGGCTT--CCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC--CCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 998854 7899999999999999999999999999999999999988876665443
No 22
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.72 E-value=3.4e-18 Score=157.64 Aligned_cols=129 Identities=16% Similarity=0.265 Sum_probs=118.0
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeeccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGEN 337 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~ 337 (472)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++. ++.++..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 3578999999999999999999999999999999999999999999999999999986 23688899999999999
Q ss_pred ccccCCCCc-ceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhh
Q psy15517 338 PCLHSTIGK-SSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRD 393 (472)
Q Consensus 338 ~~l~~~~~~-~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~ 393 (472)
+++.+ .+ ++++++|.++|+++.+++++|.+++.++|++...+.+.+..++....
T Consensus 88 ~~~~~--~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 142 (227)
T 3dkw_A 88 MMFMD--TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI 142 (227)
T ss_dssp TTTTT--CSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHH
T ss_pred HhcCC--CCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 98854 67 89999999999999999999999999999999999988877665443
No 23
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.72 E-value=9.4e-18 Score=154.53 Aligned_cols=137 Identities=22% Similarity=0.306 Sum_probs=94.5
Q ss_pred cccccccchhhHHHH--HH--HHHHHHHHHHHHHhHHHHHHH----HHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15517 2 SEYHEILSKDFFFLQ--RT--TTLIGLLKTARLLRLVRVARK----IDRYSEY-GAAVLLLLMATFALIAHWLACIWYAI 72 (472)
Q Consensus 2 ~~~~~~~P~~~~~~~--~~--~~~~~llrl~rllrl~r~~~~----i~~~~~~-~~~~l~~l~~~~~~~~H~~aC~~~~i 72 (472)
.|+.|++|++..... +. .+.+|++|++|++|+.|+.+. .+...+. ....+..+++.++++.|+.||++|.+
T Consensus 75 iDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 154 (223)
T 1orq_C 75 YEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIV 154 (223)
T ss_dssp HHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999875531 11 223444444444444444331 1222111 11235666777788899999999987
Q ss_pred ccccccccccccccccccccccccCCCCCCccchhhhhhhHHHHHHHHHHhhhhcccccccccCCCccceeeeeccccce
Q psy15517 73 GNAEKSSVGWLDILANDTHQFYINGTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGWGGFNFKHLYLRT 152 (472)
Q Consensus 73 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Y~~s~~~w~yw~~~tl~~~t 152 (472)
..... ++| ... |..| +||+++|+ |
T Consensus 155 e~~~~--~~~--------------------------------------------~~~---~~~s----~y~~~~t~---t 178 (223)
T 1orq_C 155 EYPDP--NSS--------------------------------------------IKS---VFDA----LWWAVVTA---T 178 (223)
T ss_dssp TSSST--TCS--------------------------------------------CCS---HHHH----HHHHHHHH---T
T ss_pred HhCCc--CCC--------------------------------------------cCc---chhH----HHhHHhHH---h
Confidence 43111 011 112 3378 99999999 9
Q ss_pred eeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15517 153 SVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQR 194 (472)
Q Consensus 153 tvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~ 194 (472)
||||||+.|.|+.|++++++++++|++++++.+|.+++.+.+
T Consensus 179 TvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 179 TVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp TCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998874
No 24
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.70 E-value=7.1e-17 Score=149.07 Aligned_cols=133 Identities=17% Similarity=0.307 Sum_probs=109.2
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeeccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGEN 337 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~ 337 (472)
...+++.++|.+++++.++.+...++.+.|++|++|+++|++++++|+|.+|.|+++. ++.++..+++|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 4578899999999999999999999999999999999999999999999999999986 23688999999999999
Q ss_pred ccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhC-----HHHHHHHHHHHHHHHHhhhhhh
Q psy15517 338 PCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLY-----PEFYNSFTENLEITFYMRDEEQ 396 (472)
Q Consensus 338 ~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~-----p~~~~~~~~~l~~~~~~~~~~~ 396 (472)
+++.+ ..+++++++|.++|+++.+++++|.+++.++ |++...+.+.+..++.......
T Consensus 90 ~~~~~-~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~ 152 (230)
T 3iwz_A 90 GLFIE-SDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKA 152 (230)
T ss_dssp GGTSC-CSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcC-CCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99864 2378999999999999999999999999999 9999999999887665544443
No 25
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.70 E-value=7.9e-18 Score=141.99 Aligned_cols=116 Identities=20% Similarity=0.274 Sum_probs=103.7
Q ss_pred HHHhHHhhccCccccCCCHHHHHHHhhhccccccc-CCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeeccc
Q psy15517 259 LHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAP-PGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGEN 337 (472)
Q Consensus 259 ~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~-~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~ 337 (472)
.....++++++++|..++++.++.++..++.+.|+ +|++|+++|++++.+|||.+|.|+++..+.....+++|++||+.
T Consensus 11 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l~~G~~fG~~ 90 (134)
T 2d93_A 11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLFMGNSFGIT 90 (134)
T ss_dssp HHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEECTTCEESCC
T ss_pred HHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEecCCCccChh
Confidence 33445678899999999999999999999999999 99999999999999999999999999754334789999999999
Q ss_pred ccccCCCCcceeEE-EEcceEEEEEecHhHHHHHHhhCHH
Q psy15517 338 PCLHSTIGKSSSNV-RALTYCDLHKIHRDDLLDVLDLYPE 376 (472)
Q Consensus 338 ~~l~~~~~~~~~~~-~A~~~~~l~~l~~~~f~~ll~~~p~ 376 (472)
+++.+ .++.+++ +|.++|+++.|++++|.++++++++
T Consensus 91 ~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 91 PTLDK--QYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp SSSCC--EECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred HhcCC--CcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 99854 7788888 9999999999999999999987764
No 26
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.70 E-value=4.7e-17 Score=150.61 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=115.2
Q ss_pred cCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeecccccccC
Q psy15517 268 NCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGENPCLHS 342 (472)
Q Consensus 268 ~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~~~l~~ 342 (472)
++|+|.+++++.++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++. ++.++..+++|++||+.+++.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 57899999999999999999999999999999999999999999999999984 3478999999999999998865
Q ss_pred CCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 343 TIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 343 ~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
.+++++++|.++|+++.|++++|.++++++|++...+.+.+..++......
T Consensus 94 --~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 144 (232)
T 2gau_A 94 --ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERR 144 (232)
T ss_dssp --SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999987766554443
No 27
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.68 E-value=1.1e-16 Score=154.14 Aligned_cols=133 Identities=23% Similarity=0.334 Sum_probs=122.3
Q ss_pred HhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcC------eEEEEeCCCCee
Q psy15517 261 LNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD------VVMAILGKDDIY 334 (472)
Q Consensus 261 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~~~l~~G~~f 334 (472)
....+++++|+|..++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++... ..+..+++|++|
T Consensus 154 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~f 233 (299)
T 3shr_A 154 EYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWF 233 (299)
T ss_dssp HHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEE
T ss_pred HHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEe
Confidence 35568889999999999999999999999999999999999999999999999999998743 688999999999
Q ss_pred cccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 335 GENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 335 Ge~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
||.+++.+ .+++++++|.++|+++.|++++|.+++..+|++...+.+.++.+.+.....
T Consensus 234 Ge~~ll~~--~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~~ 292 (299)
T 3shr_A 234 GEKALQGE--DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAEA 292 (299)
T ss_dssp CGGGGSSS--EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHhCC--CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchhh
Confidence 99999854 789999999999999999999999999999999999999998877665553
No 28
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.68 E-value=2.2e-17 Score=139.66 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=101.1
Q ss_pred HhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc----CeEEE--EeCCCCeeccc
Q psy15517 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD----DVVMA--ILGKDDIYGEN 337 (472)
Q Consensus 264 ~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~----~~~~~--~l~~G~~fGe~ 337 (472)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|++... +.++. .+++|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 4688999999999999999999999999999999999999999999999999997632 23444 99999999999
Q ss_pred cc---ccCCCC----cceeEEEEcceEEEEEecHhHHHHHHhhCHHHHH
Q psy15517 338 PC---LHSTIG----KSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYN 379 (472)
Q Consensus 338 ~~---l~~~~~----~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~ 379 (472)
++ +.+... +++++++|.++|+++.|++++|.++++++|++..
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 85 643111 4679999999999999999999999999997653
No 29
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.68 E-value=2.1e-16 Score=154.66 Aligned_cols=125 Identities=19% Similarity=0.221 Sum_probs=116.7
Q ss_pred HHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcC----eEEEEeCCCCeecccc
Q psy15517 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD----VVMAILGKDDIYGENP 338 (472)
Q Consensus 263 ~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~----~~~~~l~~G~~fGe~~ 338 (472)
.++|+++|+|++++++.+..++..++.+.|++|++|+++||+++++|||.+|.|+++..+ ..+..+++|++||+.+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~ 91 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA 91 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence 467899999999999999999999999999999999999999999999999999998733 4889999999999999
Q ss_pred cccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15517 339 CLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFY 390 (472)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~ 390 (472)
++.+ .+++++++|.++|+++.|++++|.+++ ++|.+...+.+.+..+..
T Consensus 92 l~~~--~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 92 LLRD--SPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHT--CBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred hcCC--CCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 9965 889999999999999999999999999 999999999999887665
No 30
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.5e-16 Score=148.41 Aligned_cols=122 Identities=17% Similarity=0.244 Sum_probs=113.3
Q ss_pred hHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeeccccccc
Q psy15517 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLH 341 (472)
Q Consensus 262 ~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~ 341 (472)
..+.|+++|+|++++++.+..++..++.+.|++|++|+++|++++++|+|.+|.|+++.++..+..+++|++|||.+++.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~l~~ 84 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELALMY 84 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEECHHHHHH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeeehhHHhc
Confidence 35688999999999999999999999999999999999999999999999999999999888889999999999999997
Q ss_pred CCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHH
Q psy15517 342 STIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385 (472)
Q Consensus 342 ~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l 385 (472)
+ .+++++++|.++|+++.|++++|.+++..+|.....+...+
T Consensus 85 ~--~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (246)
T 3of1_A 85 N--SPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDL 126 (246)
T ss_dssp T--CCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHH
T ss_pred C--CCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHH
Confidence 5 78999999999999999999999999999998776655444
No 31
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.67 E-value=1.8e-16 Score=144.26 Aligned_cols=124 Identities=22% Similarity=0.409 Sum_probs=108.4
Q ss_pred ccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccccCCC
Q psy15517 270 SAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHSTI 344 (472)
Q Consensus 270 ~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~~~~ 344 (472)
++++.++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +.++..+++|++||+.+++.+
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~-- 79 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE-- 79 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTST--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcC--
Confidence 4566789999999999999999999999999999999999999999999862 258899999999999999865
Q ss_pred C-cceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 345 G-KSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 345 ~-~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
. +++++++|.++|+++.+++++|.+++.++|++...+.+.+..++......
T Consensus 80 ~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~ 131 (210)
T 3ryp_A 80 GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEK 131 (210)
T ss_dssp TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 5 78999999999999999999999999999999999998887766554433
No 32
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.67 E-value=2.5e-16 Score=142.93 Aligned_cols=119 Identities=19% Similarity=0.319 Sum_probs=106.2
Q ss_pred CCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccccCCCC----
Q psy15517 275 ASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHSTIG---- 345 (472)
Q Consensus 275 ~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~~~~~---- 345 (472)
++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++.. +.++..+++|++||+.+++.+ .
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~--~~~~~ 78 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK--EGSEQ 78 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-------C
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcC--CCCCC
Confidence 57899999999999999999999999999999999999999999852 268899999999999999865 5
Q ss_pred cceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 346 KSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 346 ~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
+++++++|.++|+++.|++++|.++++++|++...+.+.+..++......
T Consensus 79 ~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~ 128 (207)
T 2oz6_A 79 ERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRK 128 (207)
T ss_dssp BCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998887666554433
No 33
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.67 E-value=5.5e-16 Score=148.52 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=116.3
Q ss_pred HHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeeccccc
Q psy15517 260 HLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPC 339 (472)
Q Consensus 260 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~ 339 (472)
....+.|+++|+|++++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++.++..+..+++|++||+.++
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~~~~~l~~G~~fGe~~l 114 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELAL 114 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETTEEEEEECTTCEECGGGG
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECCeEEEEcCCCCccchHHH
Confidence 34567899999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred ccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHH
Q psy15517 340 LHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLE 386 (472)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~ 386 (472)
+.+ .++.++++|.++|+++.|++++|.+++..+|.....+...+.
T Consensus 115 ~~~--~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 159 (291)
T 2qcs_B 115 IYG--TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFL 159 (291)
T ss_dssp TCC--CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcC--CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHH
Confidence 865 789999999999999999999999999999999877766553
No 34
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.65 E-value=3.5e-16 Score=142.89 Aligned_cols=126 Identities=16% Similarity=0.122 Sum_probs=104.8
Q ss_pred CccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccccCC
Q psy15517 269 CSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHST 343 (472)
Q Consensus 269 ~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~~~ 343 (472)
-|.|+..++.....+...++.+.|++|++|+++|++++++|+|.+|.|+++.. +.++..+++|++||+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~- 82 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS- 82 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC-
Confidence 47788889999999999999999999999999999999999999999999862 267899999999999998854
Q ss_pred CCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 344 IGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 344 ~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
..++.++++|.++|+++.|++++|.+++.++|++...+.+.+..+.......
T Consensus 83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~ 134 (213)
T 1o5l_A 83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEK 134 (213)
T ss_dssp SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 1388999999999999999999999999999999999998887766544433
No 35
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.8e-16 Score=144.32 Aligned_cols=118 Identities=19% Similarity=0.305 Sum_probs=108.9
Q ss_pred HhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCe-EEEEeCCCCeeccccc
Q psy15517 261 LNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDV-VMAILGKDDIYGENPC 339 (472)
Q Consensus 261 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~-~~~~l~~G~~fGe~~~ 339 (472)
+...+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+. .+..+++|++|||.++
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~ 201 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVAL 201 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHH
Confidence 345677889999999999999999999999999999999999999999999999999998654 8899999999999999
Q ss_pred ccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHH
Q psy15517 340 LHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNS 380 (472)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~ 380 (472)
+.+ .++.++++|.++|+++.|++++|.+++..+|++..+
T Consensus 202 ~~~--~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 202 LND--LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp HHT--CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred hCC--CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 965 899999999999999999999999999999987643
No 36
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=153.33 Aligned_cols=126 Identities=14% Similarity=0.162 Sum_probs=117.0
Q ss_pred HHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeeccccc
Q psy15517 260 HLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPC 339 (472)
Q Consensus 260 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~ 339 (472)
....+.|+++++|++++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+..+..+++|++|||.++
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~fGe~al 205 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELAL 205 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTEEEEEEESSCCBCGGGG
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEeeeCCCCCEEEchHH
Confidence 44567899999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHH
Q psy15517 340 LHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEI 387 (472)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~ 387 (472)
+.+ .++.++++|.++|+++.|++++|.+++.++|.....+...+..
T Consensus 206 l~~--~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 206 IYG--TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp TSC--CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcC--CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 965 8999999999999999999999999999999998776655543
No 37
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.64 E-value=1.8e-16 Score=135.72 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=53.4
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGT 199 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~ 199 (472)
.| +||+++|+ |||||||+.|.|+.+++++++++++|++++++++|.+++.+.+...+.
T Consensus 87 ~a----~y~s~vTl---tTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 87 DA----LWWSVETA---TTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp HH----HHHHHHHH---TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred ce----eheeeeee---ecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 99999999 999999999999999999999999999999999999999998765544
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.64 E-value=1.6e-15 Score=145.18 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=113.2
Q ss_pred hHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc------CeEEEEeCCCCeec
Q psy15517 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD------DVVMAILGKDDIYG 335 (472)
Q Consensus 262 ~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~------~~~~~~l~~G~~fG 335 (472)
...+++++++|..+++..+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. ...+..+++|++||
T Consensus 155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fG 234 (291)
T 2qcs_B 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG 234 (291)
T ss_dssp HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEEC
T ss_pred HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEec
Confidence 345778899999999999999999999999999999999999999999999999999852 25789999999999
Q ss_pred ccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHH
Q psy15517 336 ENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEI 387 (472)
Q Consensus 336 e~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~ 387 (472)
|.+++.+ .+++++++|.++|+++.|++++|.+++..+|++...+.+....
T Consensus 235 e~~ll~~--~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~ 284 (291)
T 2qcs_B 235 EIALLMN--RPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS 284 (291)
T ss_dssp SGGGTCC--CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHH
T ss_pred HHHHcCC--CCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999965 7899999999999999999999999999999998887777654
No 39
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.63 E-value=1.1e-16 Score=147.06 Aligned_cols=123 Identities=9% Similarity=0.061 Sum_probs=110.0
Q ss_pred hhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE----cCeEEEEeCCCCeecccccc
Q psy15517 265 LLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR----DDVVMAILGKDDIYGENPCL 340 (472)
Q Consensus 265 ~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~----~~~~~~~l~~G~~fGe~~~l 340 (472)
+|+++|+|.+++++.+..++..++.+.|++|++|+++|++++++|+|.+|.|+++. ++.++..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence 36789999999999999999999999999999999999999999999999999963 226789999999999
Q ss_pred cCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhh
Q psy15517 341 HSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQ 396 (472)
Q Consensus 341 ~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~ 396 (472)
.+++++++|.++|+++.|++++|.+++.++|++...+.+.+..++.......
T Consensus 76 ----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 127 (222)
T 1ft9_A 76 ----MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTI 127 (222)
T ss_dssp ----SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999877765554443
No 40
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.63 E-value=2.8e-16 Score=129.54 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=52.1
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLY 196 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~ 196 (472)
.| +||++.|+ |||||||++|.|+.+++++++++++|+.++++.+|.+++.+.+..
T Consensus 64 ~a----~y~~~~T~---tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 64 RA----LWWACETA---TTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp HH----HHHHHHHH---TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc----hhheeeee---eeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 99999999 999999999999999999999999999999999999999987643
No 41
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.63 E-value=3.6e-16 Score=143.45 Aligned_cols=124 Identities=10% Similarity=0.162 Sum_probs=111.9
Q ss_pred HhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE----cCeEEEEeCCCCeeccccc
Q psy15517 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR----DDVVMAILGKDDIYGENPC 339 (472)
Q Consensus 264 ~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~----~~~~~~~l~~G~~fGe~~~ 339 (472)
.+++++|+|.+++++.++.++..++.+.|++|++|+++|++++++|+|.+|.|+++. ++.++..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~--- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT--- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence 468899999999999999999999999999999999999999999999999999963 2267899999999998
Q ss_pred ccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhh
Q psy15517 340 LHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQ 396 (472)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~ 396 (472)
+++++++|.++|+++.|++++|.+++.++|++...+.+.+..++.......
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 131 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTII 131 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999998877665544443
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=150.92 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=117.8
Q ss_pred HHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc------CeEEEEeCCCCe
Q psy15517 260 HLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD------DVVMAILGKDDI 333 (472)
Q Consensus 260 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~------~~~~~~l~~G~~ 333 (472)
.++..+++++++|..+++..+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++.. ...+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 45567889999999999999999999999999999999999999999999999999999973 246899999999
Q ss_pred ecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15517 334 YGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFY 390 (472)
Q Consensus 334 fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~ 390 (472)
|||.+++.+ .++.++++|.++|+++.|++++|.+++..+|++..+..+..+..+.
T Consensus 324 fGe~all~~--~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l~ 378 (381)
T 4din_B 324 FGEIALLLN--RPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFIS 378 (381)
T ss_dssp ECTTGGGSC--CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHHT
T ss_pred echHHHhCC--CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 999999965 7999999999999999999999999999999999888877766543
No 43
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.62 E-value=9e-16 Score=144.71 Aligned_cols=121 Identities=22% Similarity=0.440 Sum_probs=106.6
Q ss_pred cCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccccCCCC-c
Q psy15517 273 KGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHSTIG-K 346 (472)
Q Consensus 273 ~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~~~~~-~ 346 (472)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. +.++..+++|++||+.+++.+ . +
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~--~~~ 132 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEE--GQE 132 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTST--TCB
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCC--CCC
Confidence 4489999999999999999999999999999999999999999999862 258899999999999999865 5 7
Q ss_pred ceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 347 SSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 347 ~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
++++++|.++|+++.|++++|.+++.++|++...+.+.+..++......
T Consensus 133 ~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~ 181 (260)
T 3kcc_A 133 RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEK 181 (260)
T ss_dssp CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887766554443
No 44
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.59 E-value=4.2e-15 Score=139.19 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=112.9
Q ss_pred hhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeeccccc
Q psy15517 265 LLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPC 339 (472)
Q Consensus 265 ~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~ 339 (472)
++.+...+..++++.++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++.. +.++..+++|++||+ +
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 344444558899999999999999999999999999999999999999999999862 268899999999999 6
Q ss_pred ccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhhCC
Q psy15517 340 LHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQAGV 399 (472)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 399 (472)
+.+ . ++++++|.++|+++.+++++|.+++.++|++...+.+.+..++.........+
T Consensus 88 l~~--~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~ 144 (250)
T 3e6c_C 88 YPT--G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEM 144 (250)
T ss_dssp SCC--S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC--C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 6 89999999999999999999999999999999999999987776555444333
No 45
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.59 E-value=4.8e-15 Score=149.17 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=110.8
Q ss_pred HHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc----CeEEEEeCCCCee
Q psy15517 259 LHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD----DVVMAILGKDDIY 334 (472)
Q Consensus 259 ~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~----~~~~~~l~~G~~f 334 (472)
.....+.|+++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|+|.+|.|+++.. +..+..+++|++|
T Consensus 140 ~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~f 219 (416)
T 3tnp_B 140 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF 219 (416)
T ss_dssp HHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEE
T ss_pred HHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEE
Confidence 445667899999999999999999999999999999999999999999999999999999863 3678999999999
Q ss_pred cccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHH
Q psy15517 335 GENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNS 380 (472)
Q Consensus 335 Ge~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~ 380 (472)
||.+++.+ .++.++++|.++|+++.|++++|.+++..+|.....
T Consensus 220 Ge~all~~--~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~ 263 (416)
T 3tnp_B 220 GELALMYN--TPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 263 (416)
T ss_dssp CGGGGTSC--CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred eeHHHhcC--CCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence 99999965 889999999999999999999999999999987643
No 46
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.58 E-value=4.2e-15 Score=149.63 Aligned_cols=127 Identities=13% Similarity=0.166 Sum_probs=109.2
Q ss_pred hHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----------CeEEEEeCC
Q psy15517 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----------DVVMAILGK 330 (472)
Q Consensus 262 ~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----------~~~~~~l~~ 330 (472)
+..+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++.. +..+..+++
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~ 344 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFR 344 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECT
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCC
Confidence 345788899999999999999999999999999999999999999999999999999853 257899999
Q ss_pred CCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy15517 331 DDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFY 390 (472)
Q Consensus 331 G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~ 390 (472)
|++|||.+++.+ .++.++++|.++|+++.|++++|.+++..+|++..+..+.+..++.
T Consensus 345 G~~fGE~all~~--~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~ 402 (416)
T 3tnp_B 345 GQYFGELALVTN--KPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLV 402 (416)
T ss_dssp TCEESGGGGTCC--SCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC---------
T ss_pred CCEecHHHHhCC--CCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999999954 7899999999999999999999999999999998877776655443
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.57 E-value=4.8e-15 Score=151.89 Aligned_cols=131 Identities=20% Similarity=0.295 Sum_probs=118.3
Q ss_pred CcHhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-------
Q psy15517 249 FPECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD------- 321 (472)
Q Consensus 249 Lp~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~------- 321 (472)
.|+..|.+...+...+.++++++|.+++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 4666677666777788999999999999999999999999999999999999999999999999999999862
Q ss_pred CeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHH
Q psy15517 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFT 382 (472)
Q Consensus 322 ~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~ 382 (472)
+..+..+++|++||+.+ +.+ .+++++++|.++|+++.|++++|.+++.++|++...+.
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~--~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~ 164 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDN--TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGT--CBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred ceEEEEccCCCCcchhh-hCC--CCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHH
Confidence 26899999999999999 755 78999999999999999999999999999998765444
No 48
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.57 E-value=8.8e-15 Score=125.10 Aligned_cols=82 Identities=24% Similarity=0.313 Sum_probs=65.3
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH------HHhhc----chhhHHHHHHHHHHH
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSA------IIQRL----YSGTARYHTQMLRVR 210 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~------i~~~~----~~~~~~~~~~~~~i~ 210 (472)
+||+++|+ |||||||++|.|..+++++++.+++|++++++.++.++. +.... +....+..++++.++
T Consensus 57 ~y~~~~t~---tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~ 133 (148)
T 3vou_A 57 LYFSVVTL---TTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIE 133 (148)
T ss_dssp HHHHHHHH---TTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999886 33222 233345567788999
Q ss_pred HHHHhCCCCHHHHHH
Q psy15517 211 EFIRFHQIPNPLRQR 225 (472)
Q Consensus 211 ~~m~~~~i~~~L~~r 225 (472)
++++.++.|++|+.|
T Consensus 134 ~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 134 KKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHTTC------
T ss_pred HHHHhcCCCcCCCCC
Confidence 999999999999865
No 49
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.57 E-value=1.2e-15 Score=128.24 Aligned_cols=90 Identities=14% Similarity=0.210 Sum_probs=53.1
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVREFIR 214 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~ 214 (472)
.| +||+++|+ |||||||++|.|+.|++++++++++|+++++++++.+++.+.+......+.++.....+...+
T Consensus 46 ~a----~y~~~~T~---tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (137)
T 4h33_A 46 DA----LWWAIVTA---TTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISE 118 (137)
T ss_dssp HH----HHHHHHHH---TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC----------------
T ss_pred HH----HHHHHHHH---HcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77 99999999 999999999999999999999999999999999999999887655444333322222222333
Q ss_pred hCCCCHHHHHHHHHHHH
Q psy15517 215 FHQIPNPLRQRLEEYFQ 231 (472)
Q Consensus 215 ~~~i~~~L~~ri~~y~~ 231 (472)
..+++.+....++++++
T Consensus 119 ~~~l~~~~i~~l~~~l~ 135 (137)
T 4h33_A 119 TPDLTKEEIAVVEQFLT 135 (137)
T ss_dssp -----------------
T ss_pred hhhccHHHHHHHHHHHh
Confidence 44555555556665553
No 50
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.57 E-value=7e-15 Score=150.63 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=106.7
Q ss_pred HhHHhhccCccccCCCHHHHHHHhhhccc-ccccCCCEEEecCCCcCeEEEEEeeeEEEEEcC-eEEEEeCCCCeecccc
Q psy15517 261 LNRNLLSNCSAFKGASPGCLRALSLKFKT-THAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-VVMAILGKDDIYGENP 338 (472)
Q Consensus 261 ~~~~~l~~~~~F~~~~~~~l~~l~~~~~~-~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~G~~fGe~~ 338 (472)
...+.++++++|.+++++.+..++..+.. +.|++|++|+++||+++.+|||.+|.|+++..+ ..+..+++|++|||.+
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fGe~~ 413 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLA 413 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGG
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEEEeh
Confidence 34568999999999999999999999985 599999999999999999999999999999865 4899999999999999
Q ss_pred cccCCCCcceeEEEEcc-eEEEEEecHhHHHHHHhhCHHHHHHHHHHHH
Q psy15517 339 CLHSTIGKSSSNVRALT-YCDLHKIHRDDLLDVLDLYPEFYNSFTENLE 386 (472)
Q Consensus 339 ~l~~~~~~~~~~~~A~~-~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~ 386 (472)
++.+ .++.++++|.+ +|+++.|++++|.+++.++|++...+.+...
T Consensus 414 ll~~--~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~~~ 460 (469)
T 1o7f_A 414 LVND--APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHDQ 460 (469)
T ss_dssp GTCC--SCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC---------
T ss_pred hhcC--CCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhcCc
Confidence 9954 78999999998 7999999999999999999999888776543
No 51
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.55 E-value=2.2e-14 Score=133.70 Aligned_cols=119 Identities=16% Similarity=0.270 Sum_probs=103.6
Q ss_pred HHHHHHHhhhcc---cccccCCCEEEecCCCcCeEEEEEeeeEEEEE-----cCeEEEEeCCCCeecccccccCCCCcce
Q psy15517 277 PGCLRALSLKFK---TTHAPPGDTLVHKGDVLTSLYFISRGSIEILR-----DDVVMAILGKDDIYGENPCLHSTIGKSS 348 (472)
Q Consensus 277 ~~~l~~l~~~~~---~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~~~~~l~~G~~fGe~~~l~~~~~~~~ 348 (472)
+++++.+..... .+.|++|++|+.+|++++.+|+|.+|.|+++. ++.++..+++|++||+.+++.+...++.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677888888888 99999999999999999999999999999986 2368899999999999999865322356
Q ss_pred eEEEEcceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 349 SNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 349 ~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
++++|.++|+++.|++++|.+++.++|++...+.+.+..++......
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~ 156 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMM 156 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999887766554433
No 52
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.54 E-value=5.3e-15 Score=151.85 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=51.6
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYS 197 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~ 197 (472)
.| +||++.|+ |||||||+.|.|..+++++++++++|++++++.+|.+.+.+.....
T Consensus 378 ~a----~y~~~vT~---TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 378 DA----FWWAVVSM---TTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp HH----HHHHHHHH---TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hh----hheeeeEE---EecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 99999999 9999999999999999999999999999999999999887766543
No 53
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.52 E-value=6.5e-14 Score=130.02 Aligned_cols=121 Identities=10% Similarity=0.042 Sum_probs=101.4
Q ss_pred cCCCHHHHHHHhh--hcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccccCCCC
Q psy15517 273 KGASPGCLRALSL--KFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHSTIG 345 (472)
Q Consensus 273 ~~~~~~~l~~l~~--~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~~~~~ 345 (472)
++++++.+..+.. .++.+.|++|++|+++|++++++|+|.+|.|+++.. +.++..+ +|++||+.+++.+ .
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~--~ 78 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDT--E 78 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTT--C
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcC--C
Confidence 3578888888874 599999999999999999999999999999999862 2677888 9999999999865 4
Q ss_pred cc--eeEEEEc-ceEEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhh
Q psy15517 346 KS--SSNVRAL-TYCDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEEQ 396 (472)
Q Consensus 346 ~~--~~~~~A~-~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~ 396 (472)
++ +.++.|. ++|+++.|++++|.+++.++|++...+.+.+..++.......
T Consensus 79 ~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~ 132 (238)
T 2bgc_A 79 TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKF 132 (238)
T ss_dssp CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 5667777 599999999999999999999999999998877665544433
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.47 E-value=1.4e-13 Score=153.65 Aligned_cols=118 Identities=22% Similarity=0.356 Sum_probs=107.4
Q ss_pred HHhHHhhccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-------CeEEEEeCCCC
Q psy15517 260 HLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-------DVVMAILGKDD 332 (472)
Q Consensus 260 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-------~~~~~~l~~G~ 332 (472)
+.....|+++++|+++++..+.+|+..++...|++|++||++||+++++|+|.+|.|.++.. +..+..+++|+
T Consensus 38 ~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~ 117 (999)
T 4f7z_A 38 DIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGT 117 (999)
T ss_dssp HHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTC
T ss_pred HHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCc
Confidence 34446789999999999999999999999999999999999999999999999999999863 36789999999
Q ss_pred eecccccccCCCCcceeEEEEcceEEEEEecHhHHHHHHhhCHHHHHH
Q psy15517 333 IYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNS 380 (472)
Q Consensus 333 ~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ll~~~p~~~~~ 380 (472)
.||| +++.+ .||+++|+|.++|++++|++++|..++.++|+....
T Consensus 118 sFGE-all~n--~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~~ 162 (999)
T 4f7z_A 118 AFGE-SILDN--TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG 162 (999)
T ss_dssp EECG-GGGGT--CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred chhh-hhccC--CCcceEEEeccceEEEEEEHHHHHHHHHhChHHHHH
Confidence 9999 78765 789999999999999999999999999999876543
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.46 E-value=1e-13 Score=147.36 Aligned_cols=129 Identities=19% Similarity=0.237 Sum_probs=113.0
Q ss_pred HhHHHHHHHHHhHHhhccCccccCCCHHHHHHHhhhcc-cccccCCCEEEecCCCcCeEEEEEeeeEEEEEcC-eEEEEe
Q psy15517 251 ECLQADICLHLNRNLLSNCSAFKGASPGCLRALSLKFK-TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-VVMAIL 328 (472)
Q Consensus 251 ~~L~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~-~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l 328 (472)
+..|.+...+...+.++++++|.+++++.+..++..+. .+.|++|++|+++||+++.+|+|.+|.|+++..+ .++..+
T Consensus 19 p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g~~il~~l 98 (694)
T 3cf6_E 19 PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTL 98 (694)
T ss_dssp GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeCCEEEEEe
Confidence 33344334444567899999999999999999999998 7899999999999999999999999999999855 588999
Q ss_pred CCCCeecccccccCCCCcceeEEEEcc-eEEEEEecHhHHHHHHhhCHHHHHHH
Q psy15517 329 GKDDIYGENPCLHSTIGKSSSNVRALT-YCDLHKIHRDDLLDVLDLYPEFYNSF 381 (472)
Q Consensus 329 ~~G~~fGe~~~l~~~~~~~~~~~~A~~-~~~l~~l~~~~f~~ll~~~p~~~~~~ 381 (472)
++|++||+.+++.+ .+++++++|.+ +|+++.|++++|.+++.++|.+...+
T Consensus 99 ~~Gd~fGe~al~~~--~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l 150 (694)
T 3cf6_E 99 HEGDDFGKLALVND--APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 150 (694)
T ss_dssp ETTCEECHHHHHHT--CBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred CCCCEeehHHHhCC--CCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 99999999999855 78999999999 59999999999999999999885433
No 56
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.45 E-value=1.2e-13 Score=116.85 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=51.0
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRL 195 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~ 195 (472)
.| +||+++|+ |||||||++|.|..+++++++++++|+++++++++.++..+.+.
T Consensus 43 ~a----~yf~~~T~---tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 43 RA----LWWSVETA---TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp HH----HHHHHHHH---TTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred HH----HHHHheee---ecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 99999999 99999999999999999999999999999999999999887654
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.44 E-value=2.1e-13 Score=122.43 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=90.7
Q ss_pred ccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecH
Q psy15517 290 THAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHR 364 (472)
Q Consensus 290 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~ 364 (472)
+.|++|++|+++|++++.+|+|.+|.|+++.. +.++..+++|++||+ +++.+ .+++++++|.++|+++.||+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~--~~~~~~~~A~~~~~v~~i~~ 78 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEG--KAYRYTAEAMTEAVVQGLEP 78 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTC--SBCSSEEEESSSEEEEEECG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCC--CCceeEEEECCcEEEEEEcH
Confidence 57899999999999999999999999999862 267899999999999 98854 78999999999999999999
Q ss_pred hHHHHHHhhCHHHHHHHHHHHHHHHHhhhhhhhCCCCccccc
Q psy15517 365 DDLLDVLDLYPEFYNSFTENLEITFYMRDEEQAGVDPRCGRH 406 (472)
Q Consensus 365 ~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 406 (472)
++|. |++...+.+.+..++.........+....+..
T Consensus 79 ~~~~------p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 114 (195)
T 3b02_A 79 RAMD------HEALHRVARNLARQMRRVQAYEAHLQTGELRA 114 (195)
T ss_dssp GGCC------HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHcC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 9998 99999999988877765555444333333333
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.37 E-value=3e-12 Score=142.85 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=100.8
Q ss_pred HHhHHhhccCccccCCCHHHHHHHhhhcccc-cccCCCEEEecCCCcCeEEEEEeeeEEEEEcC-eEEEEeCCCCeeccc
Q psy15517 260 HLNRNLLSNCSAFKGASPGCLRALSLKFKTT-HAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-VVMAILGKDDIYGEN 337 (472)
Q Consensus 260 ~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~-~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~G~~fGe~ 337 (472)
+...+.+.++|.|++++....+.|+..+... .+.+|++|+++||.++.+|||.+|.|+++..+ ..+..+++||+|||.
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~FGEl 412 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKL 412 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECGG
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcceEEecCCCcccch
Confidence 3455778999999999999999999999865 46789999999999999999999999999754 678999999999999
Q ss_pred ccccCCCCcceeEEEEcce-EEEEEecHhHHHHHHhh
Q psy15517 338 PCLHSTIGKSSSNVRALTY-CDLHKIHRDDLLDVLDL 373 (472)
Q Consensus 338 ~~l~~~~~~~~~~~~A~~~-~~l~~l~~~~f~~ll~~ 373 (472)
+++.+ .||.+|++|.++ |++++|++++|.+++..
T Consensus 413 ALL~~--~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 413 ALVND--APRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp GGTCS--CBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred hhccC--CCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 99965 899999999985 99999999999999864
No 59
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.36 E-value=7.6e-13 Score=105.50 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=51.7
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLY 196 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~ 196 (472)
.| +||++.|+ |||||||+.|.|..+++++++.+++|+.++++.++.+++.+.+..
T Consensus 43 ~a----~y~~~~T~---tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 43 DA----IWWSVETA---TTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp GT----TTTTTGGG---GCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred HH----HHHHHHHH---hcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 99999999 999999999999999999999999999999999999998877543
No 60
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.31 E-value=8.4e-13 Score=119.17 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=85.5
Q ss_pred hhhcccccccCCCEEEecCCCc--CeEEEEEeeeEEEEEc-----CeEEEEeCCCCeecccccccCCCCcceeEEEEcce
Q psy15517 284 SLKFKTTHAPPGDTLVHKGDVL--TSLYFISRGSIEILRD-----DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTY 356 (472)
Q Consensus 284 ~~~~~~~~~~~ge~I~~~G~~~--~~ly~I~~G~v~v~~~-----~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~ 356 (472)
...++.+.|++|++|+++|+++ +++|+|.+|.|+++.. +.++..+++|++||+ +++.+ .+++++++|.++
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~--~~~~~~~~A~~~ 78 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFG--QERIYFAEAATD 78 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHT--CCBCSEEEESSC
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCC--CCcceEEEEccc
Confidence 4567889999999999999999 9999999999999862 267899999999999 88865 789999999999
Q ss_pred EEEEEecHhHHHHHHhhCHHHHHHHHHHHHHHHHhhhhh
Q psy15517 357 CDLHKIHRDDLLDVLDLYPEFYNSFTENLEITFYMRDEE 395 (472)
Q Consensus 357 ~~l~~l~~~~f~~ll~~~p~~~~~~~~~l~~~~~~~~~~ 395 (472)
|+++.+ +++|. |++...+.+.+..++......
T Consensus 79 ~~v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~~~ 110 (202)
T 2zcw_A 79 VRLEPL-PENPD------PELLKDLAQHLSQGLAEAYRR 110 (202)
T ss_dssp EEEEEC-CSSCC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEE-hHhcC------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99886 999988888887665544433
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.31 E-value=3.8e-12 Score=103.17 Aligned_cols=53 Identities=34% Similarity=0.434 Sum_probs=49.4
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLY 196 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~ 196 (472)
+||+++|+ |||||||+.|.|+.+++++++.+++|+.++++.++.+++.+...+
T Consensus 54 ~y~~~~T~---tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 54 LYFSVVTL---TTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp HHHHHHHH---TSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHh---cceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999999986544
No 62
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.22 E-value=6.1e-14 Score=122.17 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=53.6
Q ss_pred cccCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy15517 133 YGAAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRLYSG 198 (472)
Q Consensus 133 Y~~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~ 198 (472)
|..| +||+++|+ |||||||++|.|..+++++++++++|++++++++|.+++.+.+...+
T Consensus 68 ~~~a----~yf~~~T~---tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 126 (166)
T 3pjs_K 68 YPRA----LWWSVETA---TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126 (166)
T ss_dssp TTTT----TTTTHHHH---SCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred HHHH----HHHHHHHh---ccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3388 99999999 99999999999999999999999999999999999999888765433
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.18 E-value=2.2e-11 Score=95.67 Aligned_cols=51 Identities=33% Similarity=0.516 Sum_probs=48.8
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQR 194 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~ 194 (472)
+||+++|+ |||||||+.|.|..+++++++.+++|+.++++.++.++..++.
T Consensus 37 ~yf~~~T~---tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 37 LYFSVVTL---TTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHH---TTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHH---HccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999 9999999999999999999999999999999999999988763
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.17 E-value=3.5e-11 Score=91.36 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=47.4
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAII 192 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~ 192 (472)
+||+++|+ |||||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 33 ~yf~~~T~---tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 33 LYWTFVTI---ATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHH---TTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999998875
No 65
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.92 E-value=8.4e-10 Score=105.94 Aligned_cols=52 Identities=29% Similarity=0.317 Sum_probs=49.7
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRL 195 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~ 195 (472)
+||+++|+ |||||||++|.+..+++++++.+++|++++++++|.+...+...
T Consensus 101 ~yfs~vT~---tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 101 FFFSVETL---ATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp HHHHTTTT---TTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred Hhhhheee---eecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999888754
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.91 E-value=1.1e-09 Score=104.08 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=48.2
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQR 194 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~ 194 (472)
+||+++|+ |||||||++|.+..+++++++.+++|++++++++|.+.+.+..
T Consensus 87 ~yfs~vT~---tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 87 FFFSVQTM---ATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp HHHHHHHH---TTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhhhe---eccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999999999999999999999999999999988877753
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.76 E-value=5.4e-09 Score=98.86 Aligned_cols=55 Identities=31% Similarity=0.506 Sum_probs=52.0
Q ss_pred cccCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15517 133 YGAAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQR 194 (472)
Q Consensus 133 Y~~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~ 194 (472)
|..| +||+++|+ |||||||++|.|...++++++.+++|+.+++++++.++..+..
T Consensus 116 ~~~a----~yf~~~t~---tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 116 LGSA----FFFSGTII---TTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp HHHH----HHHHHHHH---TSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh----hHhhheee---eecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588 99999999 9999999999999999999999999999999999999988764
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.73 E-value=1e-08 Score=98.08 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=49.3
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRL 195 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~ 195 (472)
+||+++|+ |||||||+.|.+...++++++.+++|++++++++|.+.+.+...
T Consensus 83 ~y~s~vT~---tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 83 FFFSVETL---ATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp HHHHHHHH---TTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred eeeeeEEe---ccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999998877653
No 69
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.72 E-value=8.9e-09 Score=107.67 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=45.2
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGN-VSAII 192 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~-i~~i~ 192 (472)
+||+++|+ |||||||+.|.|..+++++++++++|++++++.++. +...+
T Consensus 56 ~y~~~~t~---tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 56 IYWTITVM---TTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHH---TTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hheeeeee---eeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999987 44443
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.63 E-value=5.3e-08 Score=93.19 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=47.6
Q ss_pred ceeeeeccccceeeecCCCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPN--TDNEKIFTILVMLVGSLMYASIFGNVSAIIQRL 195 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~--t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~ 195 (472)
+||++.|+ |||||||+.|. ++..++++++.+++|.++.|+++|.+..-+...
T Consensus 96 f~fSv~T~---TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 96 FLFSIETE---TTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp HHHHHHHH---SCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred Hhhhheee---eeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999 99999999996 688999999999999999999999887776654
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.56 E-value=6.4e-08 Score=91.51 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=52.0
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEK------IFTILVMLVGSLMYASIFGNVSAIIQRLYSGT 199 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~------~~~i~~~i~g~~~~~~iig~i~~i~~~~~~~~ 199 (472)
.| +||+++|+ |||||||+.|.+..++ +++++++++|+.+++++++.++..+.....+.
T Consensus 227 da----~y~~~vTl---tTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 227 EA----IYFVIVTL---TTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp HH----HHHHHHHH---TTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HH----HHHHHhhe---eccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 99999999 9999999999999887 59999999999999999999999887665433
No 72
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.50 E-value=1.1e-07 Score=91.01 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=47.1
Q ss_pred ceeeeeccccceeeecCCCCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAP--NTDNEKIFTILVMLVGSLMYASIFGNVSAIIQRL 195 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p--~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~~ 195 (472)
+||++.|+ |||||||+.| .++..++++.+.+++|+++.|.++|.+..-+...
T Consensus 99 f~fSv~T~---TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp 152 (343)
T 3spc_A 99 FLFSIETQ---TTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARP 152 (343)
T ss_dssp HHHHHHHH---SCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hheeeeee---EeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999 9999999986 4899999999999999999999999887776643
No 73
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.50 E-value=4.6e-08 Score=92.97 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=44.5
Q ss_pred cCCCccceeeeeccccceeeecC-CCC-CCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFG-NVA-PNTDNE----KIFTILVMLVGSLMYASIFGNVSAIIQRLY 196 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyG-di~-p~t~~E----~~~~i~~~i~g~~~~~~iig~i~~i~~~~~ 196 (472)
.| +||++.|+ ||+||| |+. |.+... ..+.+++++.|.++.+..+|.+.+-+....
T Consensus 183 ~a----~~~~~~~~---T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 183 ES----FYTLFQVM---TLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HH----HHHHHHHH---TTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HH----HHHHHHHH---HhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 99999999 999999 985 776644 788899999999999999999888776543
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.46 E-value=5.8e-08 Score=90.40 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=50.0
Q ss_pred cccCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 133 YGAAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQ 193 (472)
Q Consensus 133 Y~~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~ 193 (472)
|..| +||+++|+ |||||||++|.|+..++++++.+++|+.+++++++.++..+.
T Consensus 94 ~~~a----~yf~~~t~---tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 94 FTSA----LFFASTVL---STTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp HHHH----HHHHHHHH---TTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcc----hhheeeee---eccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488 99999999 999999999999999999999999999999999999886554
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.38 E-value=1.3e-07 Score=87.94 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=47.1
Q ss_pred ceeeeeccccceeeecCCCCCCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDN-------EKIFTILVMLVGSLMYASIFGNVSAIIQR 194 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~-------E~~~~i~~~i~g~~~~~~iig~i~~i~~~ 194 (472)
+||++.|+ |||||||+.|.++. .++++++++++|.++++++++.++++...
T Consensus 206 ~y~~~iTl---tTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 206 FYFCFISL---STIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHH---TTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhheeeee---ecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999985 49999999999999999999999887653
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.26 E-value=4.5e-08 Score=95.38 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=49.0
Q ss_pred cCCCccceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15517 135 AAGKGWGGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQR 194 (472)
Q Consensus 135 ~s~~~w~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~ 194 (472)
.| +||+++|+ |||||||+.|.|..+++++++++++|+++++++++.++..+.+
T Consensus 48 ~a----~y~~~~t~---tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 48 VS----LYWTFVTI---ATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp TT----HHHHHHHH---TTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HH----HHHHHHHh---hcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78 99999999 9999999999999999999999999999999999999887664
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=96.96 E-value=0.0012 Score=59.95 Aligned_cols=50 Identities=8% Similarity=0.014 Sum_probs=29.6
Q ss_pred ceeeeeccccceeeecCCCCC----CCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAP----NTDNEKIFT-ILVMLVGSLMYASIFGNVSAIIQ 193 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p----~t~~E~~~~-i~~~i~g~~~~~~iig~i~~i~~ 193 (472)
++|.+.++ ||.||+|+.. .++.-.++- .++.+.+.++....+|.+.+-++
T Consensus 170 ~~~lf~~~---t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 170 LITLFQVL---TLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp HHHHHHHH---TTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---ccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 9999998621 222333333 34444445556666666555444
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=92.94 E-value=0.1 Score=43.51 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=23.2
Q ss_pred cccccccchhhHHHH-HHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15517 2 SEYHEILSKDFFFLQ-RTTTLIGLLKTARLLRLVRVARKID 41 (472)
Q Consensus 2 ~~~~~~~P~~~~~~~-~~~~~~~llrl~rllrl~r~~~~i~ 41 (472)
+|+.|++|+...... ...+++|++|++|++|+.|+.+.+.
T Consensus 88 iDllailP~~~~~~~~~~lr~lRvlRllRv~Rllrl~r~~~ 128 (147)
T 2kyh_A 88 YEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIIS 128 (147)
T ss_dssp TTHHHHCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999998753322 2245555555555555555554443
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=91.15 E-value=0.3 Score=39.78 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=19.0
Q ss_pred cccccccchhhHHH-HHHHHHHHHHHHHHHHhHHHHHH
Q psy15517 2 SEYHEILSKDFFFL-QRTTTLIGLLKTARLLRLVRVAR 38 (472)
Q Consensus 2 ~~~~~~~P~~~~~~-~~~~~~~~llrl~rllrl~r~~~ 38 (472)
.|+.+++|...-.. +...+.+|.+|++|++|+.|+.+
T Consensus 73 iDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r 110 (132)
T 1ors_C 73 YEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILL 110 (132)
T ss_dssp GGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 58899999865221 22233444444444444444433
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=84.62 E-value=5 Score=31.23 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=45.8
Q ss_pred ccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEE
Q psy15517 288 KTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHK 361 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~ 361 (472)
....++||..+-..-.+.+.+++|++|++++...+. ...+++||.+=. +. ..+..+.+.+++.++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~i-----p~--~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA-QRRLHQGDLLYL-----GA--GAAHDVNAITNTSLLV 104 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE-EEEECTTEEEEE-----CT--TCCEEEEESSSEEEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE-EEEECCCCEEEE-----CC--CCcEEEEeCCCcEEEE
Confidence 445678888776655566899999999999988775 467999986532 22 2344566667765543
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=82.09 E-value=5 Score=30.96 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=41.0
Q ss_pred cccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 291 HAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 291 ~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
.+.||..+-....+...+++|++|.+.+...+. ...+.+||.+= .+.+.++. +.+.+++.++.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~-~~~l~~Gd~i~-----i~~~~~H~--~~~~~~~~~~~i 107 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITFDDQ-KIDLVPEDVLM-----VPAHKIHA--IAGKGRFKMLQI 107 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE-EEEECTTCEEE-----ECTTCCBE--EEEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEECCE-EEEecCCCEEE-----ECCCCcEE--EEeCCCcEEEEE
Confidence 355666554334456789999999999988764 46799998653 22234444 344466666654
No 82
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=81.95 E-value=5 Score=35.66 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=53.3
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecH
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHR 364 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~ 364 (472)
+....+.||+.+-..--+.+.+.+|++|++++...+.. ..+++||++= .+ ...+..++|.+++.++.+..
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~-~~l~~Gd~~~-----~p--~~~~H~~~a~~~~~~l~i~~ 108 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNK-KTISNGDFLE-----IT--ANHNYSIEARDNLKLIEIGE 108 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCE-EEEETTEEEE-----EC--SSCCEEEEESSSEEEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEE-EEECCCCEEE-----EC--CCCCEEEEECCCcEEEEEEe
Confidence 34556899999887777889999999999999987654 6789998652 22 23456678889999987733
No 83
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=80.09 E-value=12 Score=29.38 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=42.5
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
...+.||..+-.. ...+++++|++|++.+...+. ...+++||.+-- +.+.++...... +.++++.+
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~g~-~~~l~~GD~v~i-----p~g~~H~~~~~~-~~~~~l~v 109 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTDGE-TVTAGPGEIVYM-----PKGETVTIRSHE-EGALTAYV 109 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEETTE-EEEECTTCEEEE-----CTTCEEEEEEEE-EEEEEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEECCE-EEEECCCCEEEE-----CCCCEEEEEcCC-CCeEEEEE
Confidence 3456778765544 377899999999999988654 567999997632 122344443332 55555544
No 84
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=77.35 E-value=12 Score=31.41 Aligned_cols=87 Identities=16% Similarity=0.068 Sum_probs=51.1
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEE-cceEEEEEec----
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRA-LTYCDLHKIH---- 363 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A-~~~~~l~~l~---- 363 (472)
...+.||..+-..--...++++|++|.+.+...+. ...+++||++=. +.+.++...... .+++.++.+-
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~i-----p~~~~H~~~n~~~~~~~~~l~i~~~~~ 133 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR-VEPLTPLDCVYI-----APHAWHQIHATGANEPLGFLCIVDSDR 133 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE-EEEECTTCEEEE-----CTTCCEEEEEESSSCCEEEEEEEESSC
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE-EEEECCCCEEEE-----CCCCcEEEEeCCCCCCEEEEEEEeCCc
Confidence 34556666543333346899999999999988765 567899987632 122344443333 3455554442
Q ss_pred ------HhHHHHHHhhCHHHHHHH
Q psy15517 364 ------RDDLLDVLDLYPEFYNSF 381 (472)
Q Consensus 364 ------~~~f~~ll~~~p~~~~~~ 381 (472)
...-..-+.++|.++..+
T Consensus 134 d~p~~p~~~~~~~l~~~~~~~~~~ 157 (167)
T 3ibm_A 134 DRPQRPDADDLARMCADPAVARRI 157 (167)
T ss_dssp CCCBCCCHHHHHHHTTSHHHHHHC
T ss_pred CcccCCCHHHHHHHHcChHHHHhh
Confidence 233334456777766543
No 85
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=76.57 E-value=14 Score=28.27 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=44.1
Q ss_pred ccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 288 KTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
....+.||..+-..--...++++|++|.+.+..++.. ..+.+|+.+=. +.+. .....+.++++++.+
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~i-----p~~~--~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQET-YRVAEGQTIVM-----PAGI--PHALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEE-EEEETTCEEEE-----CTTS--CEEEEESSCEEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCEE-EEECCCCEEEE-----CCCC--CEEEEECCCceEEEE
Confidence 3445778877654434467999999999999887644 57899987632 1222 344556667766654
No 86
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=74.55 E-value=16 Score=27.97 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=44.0
Q ss_pred ccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 288 KTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
....+.||..+-..--+..++++|++|.+.+...+. ...+.+||.+=. +.+. .....+.+++.++.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~i-----p~~~--~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV-IKVLTAGDSFFV-----PPHV--DHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE-EEEECTTCEEEE-----CTTC--CEEEEESSCEEEEEE
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE-EEEeCCCCEEEE-----CcCC--ceeeEeCCCcEEEEE
Confidence 345577887653333346789999999999988664 567999987522 2222 344556667777666
No 87
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=74.00 E-value=8.8 Score=32.24 Aligned_cols=87 Identities=9% Similarity=-0.024 Sum_probs=50.2
Q ss_pred ccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe-------
Q psy15517 290 THAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI------- 362 (472)
Q Consensus 290 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l------- 362 (472)
..+.||..+-..--...++++|++|++.+...+. ...+++||++=.- .+.++.......+++.++.+
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~-~~~l~~GD~i~ip-----~g~~H~~~n~~~~~~~~l~i~~~~~d~ 131 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA-VSAVAPYDLVTIP-----GWSWHQFRAPADEALGFLCMVNAERDK 131 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE-EEEECTTCEEEEC-----TTCCEEEECCTTSCEEEEEEEESSCCC
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEEEC-----CCCcEEeEeCCCCCEEEEEEEccCCCC
Confidence 3456665543332345789999999999988765 4678999866321 22333332222333433332
Q ss_pred ---cHhHHHHHHhhCHHHHHHHH
Q psy15517 363 ---HRDDLLDVLDLYPEFYNSFT 382 (472)
Q Consensus 363 ---~~~~f~~ll~~~p~~~~~~~ 382 (472)
+..+...-|..+|.+...+.
T Consensus 132 p~~p~~~~l~~l~~~~~~~~~~~ 154 (166)
T 3jzv_A 132 PQLPTEADLAMLRADDAVAAFLD 154 (166)
T ss_dssp CBCCCHHHHHHHHTSHHHHHHHT
T ss_pred CCCCCHHHHHHHHhCcchhhhhc
Confidence 34455555777777766554
No 88
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=73.95 E-value=4.7 Score=30.19 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=32.3
Q ss_pred cccccCCCEEE-ecCCCcCeEEEEEeeeEEEEEcCe-EEEEeCCCCeec
Q psy15517 289 TTHAPPGDTLV-HKGDVLTSLYFISRGSIEILRDDV-VMAILGKDDIYG 335 (472)
Q Consensus 289 ~~~~~~ge~I~-~~G~~~~~ly~I~~G~v~v~~~~~-~~~~l~~G~~fG 335 (472)
...++||...- ...+..+.+++|++|.+.+...+. ....+.+||.+=
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEE
Confidence 34567776542 222222359999999999988764 567899998763
No 89
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=73.84 E-value=2 Score=35.86 Aligned_cols=17 Identities=0% Similarity=-0.162 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhccc
Q psy15517 59 ALIAHWLACIWYAIGNA 75 (472)
Q Consensus 59 ~~~~H~~aC~~~~i~~~ 75 (472)
++++-+.|+++|.+...
T Consensus 60 ~~~i~~~a~~~~~~E~~ 76 (155)
T 2a9h_A 60 VIVLLAGSYLAVLAERG 76 (155)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33444566666666543
No 90
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=73.57 E-value=7 Score=30.65 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=32.8
Q ss_pred ccccccCCCEEEecCCC-cCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 288 KTTHAPPGDTLVHKGDV-LTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
....+.||..+-..--+ ..++++|++|++.+...+.....+++||.+
T Consensus 42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~ 89 (125)
T 3h8u_A 42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIA 89 (125)
T ss_dssp EEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEE
T ss_pred EEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEE
Confidence 34567788776443334 378999999999998734445678999865
No 91
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=73.22 E-value=5.4 Score=33.86 Aligned_cols=69 Identities=14% Similarity=0.086 Sum_probs=40.7
Q ss_pred ccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 288 KTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
....++||...-.--....++.+|++|++++...+.....+++||.+ . . .+.++.+.-...+.++++.+
T Consensus 82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi-~-~----~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII-V-Q----RGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE-E-E----CSCCBEEECCSSSCEEEEEE
T ss_pred EEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeEEEECCCCEE-E-e----CCCcEEEEeCCCCCEEEEEE
Confidence 34456666543222223457889999999998874445779999987 3 2 12344443333444555543
No 92
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=70.19 E-value=33 Score=25.91 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=34.6
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
+-...+.||+.-.. -+.+++++|++|++.+...+.....+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKKYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCEEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCEEEECCCCEEE
Confidence 33456778876544 446899999999999988734556799999763
No 93
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=69.27 E-value=18 Score=28.07 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=48.7
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcce-EEEEEe---
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTY-CDLHKI--- 362 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~-~~l~~l--- 362 (472)
+....+.||..+-..--+..++++|++|.+.+...+.. ..+++|+.+=. +.+.+ ....+.++ +.++.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~i-----p~~~~--H~~~~~~~~~~~l~v~~p 114 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEET-RVLRPGMAYTI-----PGGVR--HRARTFEDGCLVLDIFSP 114 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEE-EEECTTEEEEE-----CTTCC--EEEECCTTCEEEEEEEES
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEE-EEeCCCCEEEE-----CCCCc--EEeEECCCCEEEEEEECC
Confidence 34456778887655444568999999999999887644 67899987532 11223 33444444 554433
Q ss_pred cHhHHHHHHh
Q psy15517 363 HRDDLLDVLD 372 (472)
Q Consensus 363 ~~~~f~~ll~ 372 (472)
++++|.+.+.
T Consensus 115 ~~~d~~~~~~ 124 (126)
T 4e2g_A 115 PREDYARMAE 124 (126)
T ss_dssp CCHHHHHHHH
T ss_pred CCcchhhhhc
Confidence 4556665543
No 94
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=68.05 E-value=11 Score=31.17 Aligned_cols=84 Identities=11% Similarity=0.017 Sum_probs=47.3
Q ss_pred cccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe--------
Q psy15517 291 HAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI-------- 362 (472)
Q Consensus 291 ~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l-------- 362 (472)
.+.||...-..--...++++|++|++++...+. ...+.+||++=- +.+.++.......+++.++.+
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~-~~~l~~Gd~i~i-----p~~~~H~~~n~g~~~~~~l~i~~~~~d~p 123 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLVGET-ISDVAQGDLVFI-----PPMTWHQFRANRGDCLGFLCVVNAARDRP 123 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEETTE-EEEEETTCEEEE-----CTTCCEEEECCSSSCEEEEEEEESSCCCC
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEEE-----CCCCcEEeEeCCCCCEEEEEEEeCCCCcc
Confidence 456665543322345789999999999988664 466889886522 122333333333334443332
Q ss_pred --cHhHHHHHHhhCHHHHHH
Q psy15517 363 --HRDDLLDVLDLYPEFYNS 380 (472)
Q Consensus 363 --~~~~f~~ll~~~p~~~~~ 380 (472)
+..+....|.++|.++..
T Consensus 124 ~~~~~~~l~~L~~~~~~~~~ 143 (156)
T 3kgz_A 124 QLPTADDLAELRKDERIADF 143 (156)
T ss_dssp BCCCHHHHHHHHTSHHHHHH
T ss_pred cCCCHHHHHHHHhCcchhhh
Confidence 223344456677766554
No 95
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=67.19 E-value=20 Score=26.41 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=32.8
Q ss_pred ccccccCCCEEEecCCC-cCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 288 KTTHAPPGDTLVHKGDV-LTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
....+.||..+-..--. .+++++|++|.+.+...+. ...+++||.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~-~~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE-EALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE-EEEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEE
Confidence 34457788776433323 3579999999999987664 4678999876
No 96
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=66.25 E-value=17 Score=27.46 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=33.6
Q ss_pred ccccccCCCEEEec--CCC-cCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 288 KTTHAPPGDTLVHK--GDV-LTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 288 ~~~~~~~ge~I~~~--G~~-~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
....+.||..+-.. --. ..++++|++|.+.+...+. ...+++||.+
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~ 72 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH-TQALQAGSLI 72 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE-EEEECTTEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEE
Confidence 34467888876543 233 6799999999999988664 4678999876
No 97
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=65.68 E-value=6.8 Score=29.79 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=41.4
Q ss_pred cCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHH
Q psy15517 293 PPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLL 368 (472)
Q Consensus 293 ~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~ 368 (472)
.||+......+..+++++|++|.+.+...+.....+++||.+= + +.+.++.. .+.+++.++.+......
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~----i-p~~~~H~~--~~~~~~~~l~i~~~~~~ 104 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAV----V-PKSVSHRP--RSENGCSLVLIELSDPS 104 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETTSCEEEECTTEEEE----E-CTTCCEEE--EEEEEEEEEEEECC---
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECCCcEEEECCCCEEE----E-CCCCcEee--EeCCCeEEEEEECCCcc
Confidence 4554332233223899999999999988773456799998763 2 22234443 33467888887765543
No 98
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=64.66 E-value=11 Score=32.23 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=40.3
Q ss_pred cccCCCEEEe---cCCCcCeEEEEEeeeEEEEEcCe---EEEEeCCCCeecccccccCCCCcceeEEEEc---ceEEEEE
Q psy15517 291 HAPPGDTLVH---KGDVLTSLYFISRGSIEILRDDV---VMAILGKDDIYGENPCLHSTIGKSSSNVRAL---TYCDLHK 361 (472)
Q Consensus 291 ~~~~ge~I~~---~G~~~~~ly~I~~G~v~v~~~~~---~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~---~~~~l~~ 361 (472)
.+.||...-. ...+.+++++|++|.+.+...+. ....+++||.+-. +.+.++. ..+. +++.++.
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~-----~~~~~H~--~~n~~~~~~~~~l~ 195 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFV-----EEHVPHA--FTAAKGTGSAKLIA 195 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEE-----CTTCCEE--EEESTTSCCEEEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEe-----CCCCceE--EEecCCCCCeEEEE
Confidence 4566655431 22234789999999999988662 5578999997632 2223444 4444 5566655
Q ss_pred e
Q psy15517 362 I 362 (472)
Q Consensus 362 l 362 (472)
+
T Consensus 196 v 196 (198)
T 2bnm_A 196 V 196 (198)
T ss_dssp E
T ss_pred E
Confidence 4
No 99
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=64.28 E-value=21 Score=28.62 Aligned_cols=63 Identities=6% Similarity=-0.083 Sum_probs=39.2
Q ss_pred ccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 290 THAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 290 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
..+.||..-. ....+++++|++|++.+...+.. ..+++||.+-- +.+.++.. ...++++++.+
T Consensus 62 ~~~~pG~~~~--h~~~~E~~~VLeG~~~l~~~g~~-~~l~~GD~i~~-----p~g~~h~~--~~~~~~~~l~v 124 (133)
T 2pyt_A 62 MQWDNAFFPW--TLNYDEIDMVLEGELHVRHEGET-MIAKAGDVMFI-----PKGSSIEF--GTPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEEE--ECSSEEEEEEEEEEEEEEETTEE-EEEETTCEEEE-----CTTCEEEE--EEEEEEEEEEE
T ss_pred EEECCCCccc--cCCCCEEEEEEECEEEEEECCEE-EEECCCcEEEE-----CCCCEEEE--EeCCCEEEEEE
Confidence 3466773222 22468999999999999987654 47999997643 22233333 33455655544
No 100
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=64.07 E-value=14 Score=30.01 Aligned_cols=69 Identities=13% Similarity=-0.035 Sum_probs=42.1
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
...+.||..+-..--...++++|++|.+.+...+.....+.+||.+=. . .+.++.......+.+.++.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~i----p-~~~~H~~~n~~~~~~~~l~v 120 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEI----P-PNVVHWHGAAPDEELVHIGI 120 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEE----C-TTCCEEEEEBTTBCEEEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECCEEEEEECCCCEEEE----C-CCCcEEeEeCCCCCEEEEEE
Confidence 445667766532222347899999999999887765467899987632 1 22344444433444555544
No 101
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=62.63 E-value=9.6 Score=29.42 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=30.2
Q ss_pred cccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 291 HAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 291 ~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
.+.||...-..--....+++|++|.+.+...+.....+.+||.+
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i 76 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIV 76 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTCEE
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEEEEeCCCCEE
Confidence 45566543211123568999999999998877665478999865
No 102
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=61.28 E-value=4.9 Score=32.36 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q psy15517 20 TLIGLLKTARLLRLVRVAR 38 (472)
Q Consensus 20 ~~~~llrl~rllrl~r~~~ 38 (472)
+++|++|++|++|+.|..+
T Consensus 95 r~lRllRv~Rvlkl~r~~~ 113 (132)
T 1ors_C 95 GLFRLVRLLRFLRILLIIS 113 (132)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444333
No 103
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=61.00 E-value=27 Score=30.80 Aligned_cols=68 Identities=15% Similarity=0.024 Sum_probs=47.8
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEE-cceEEEEEe
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRA-LTYCDLHKI 362 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A-~~~~~l~~l 362 (472)
+....+.||+.+-..--+.+.+++|++|++.+...+. ...+.+||.+=- +. ..+..+.+ .+++.++.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~-~~~l~~Gd~i~i-----p~--~~~H~~~~~~~~~~~ll~ 223 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK-PFIVKKGESAVL-----PA--NIPHAVEAETENFKMLLI 223 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE-EEEEETTEEEEE-----CT--TSCEEEECCSSCEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE-EEEECCCCEEEE-----CC--CCcEEEEeCCCCEEEEEE
Confidence 4456789999876555567889999999999988765 467899986532 22 23445666 777766543
No 104
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=59.15 E-value=7.3 Score=30.95 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=31.0
Q ss_pred cccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 291 HAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 291 ~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
...||..-....+ .+++++|++|++.+..++.....+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTVHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCEEEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeEEEECCCCEEE
Confidence 3455655443222 3899999999999998555556799999764
No 105
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=58.93 E-value=30 Score=28.45 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=34.1
Q ss_pred CcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 304 VLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 304 ~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
..+++++|++|++.+...+ ....+++||.+= .+.+.+..... .++|+++.+-
T Consensus 83 ~~eE~~yVLeG~~~l~i~g-~~~~l~~GD~i~-----iP~G~~h~~~n--~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIIIDG-RKVSASSGELIF-----IPKGSKIQFSV--PDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEETT-EEEEEETTCEEE-----ECTTCEEEEEE--EEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEECC-EEEEEcCCCEEE-----ECCCCEEEEEe--CCCEEEEEEE
Confidence 3578999999999999855 457799999653 22223333333 3666665543
No 106
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=58.39 E-value=18 Score=30.29 Aligned_cols=53 Identities=8% Similarity=0.036 Sum_probs=34.7
Q ss_pred CcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 304 VLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 304 ~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
.++.++||++|.+.+...+.. ..+++||+|=- +.+.++...-...+.|+++.+
T Consensus 109 ~gEE~~yVLeG~v~vtl~g~~-~~L~~Gds~~i-----P~g~~H~~~N~~d~~Arll~V 161 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCKNK-FLSVKGSTFQI-----PAFNEYAIANRGNDEAKMFFV 161 (166)
T ss_dssp SEEEEEEEEESEEEEEETTEE-EEEETTCEEEE-----CTTCEEEEEECSSSCEEEEEE
T ss_pred CceEEEEEEEeEEEEEECCEE-EEEcCCCEEEE-----CCCCCEEEEECCCCCEEEEEE
Confidence 468899999999999987744 47999997642 222334443334444666544
No 107
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=58.22 E-value=41 Score=30.55 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=59.4
Q ss_pred hhcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEe-CCCCeeccc---ccccCCCCcceeEEEEcceEEEE
Q psy15517 285 LKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAIL-GKDDIYGEN---PCLHSTIGKSSSNVRALTYCDLH 360 (472)
Q Consensus 285 ~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l-~~G~~fGe~---~~l~~~~~~~~~~~~A~~~~~l~ 360 (472)
..+....+++|+.+-.+-+.-+-..+++.|.+.+...+.....+ ..-+.|.+. ++..+ ....+++.|.++++++
T Consensus 29 ~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp--~g~~v~i~a~~~~~~~ 106 (270)
T 2qjv_A 29 VGFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLP--HHTEAXVTAETDLELA 106 (270)
T ss_dssp CEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEEC--SSCCEEEEESSSEEEE
T ss_pred eEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEEC--CCCEEEEEecCCceEE
Confidence 34667778999999888777778888899999999888665553 456888765 33333 3348889999999999
Q ss_pred EecHh
Q psy15517 361 KIHRD 365 (472)
Q Consensus 361 ~l~~~ 365 (472)
..+..
T Consensus 107 v~sAp 111 (270)
T 2qjv_A 107 VCSAP 111 (270)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 87664
No 108
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=58.02 E-value=14 Score=32.43 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=31.2
Q ss_pred ccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 292 APPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 292 ~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
+.||..+=.---+.+++|+|++|.++....+.....+++|+.+
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v 181 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTR 181 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTCEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCCEE
Confidence 4455443222345789999999999998876677789999865
No 109
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=58.02 E-value=17 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=32.2
Q ss_pred cccccCCCEEE--ecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 289 TTHAPPGDTLV--HKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 289 ~~~~~~ge~I~--~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
...+.||.... ......+++++|++|++.+...+. ...+.+||.+-
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~-~~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG-EHPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE-EEEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE-EEEeCCCCEEE
Confidence 44567777442 222233699999999999998775 46799998753
No 110
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=57.64 E-value=8.7 Score=30.19 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=32.9
Q ss_pred cccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecc
Q psy15517 291 HAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGE 336 (472)
Q Consensus 291 ~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe 336 (472)
...||..-... +..++++.|++|.+.+...+.....+++||.|--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQADADPVKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEETTCCCEEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeCCCeEEEECCCCEEEE
Confidence 34555544443 3345899999999999987766778999998753
No 111
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=56.34 E-value=41 Score=25.00 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=40.1
Q ss_pred cccccCCCEEEecCCC-cCeE-EEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 289 TTHAPPGDTLVHKGDV-LTSL-YFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~-~~~l-y~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
...+.||..+-..--. ...+ ++|++|.+.+...+.....+.+||.+=. +.+. .....+.+++.++.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~i-----p~~~--~H~~~~~~~~~~l~~ 105 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLVA-----PIST--PHGVRAVTDMKVLVT 105 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEEE-----ETTS--CEEEEESSSEEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEEe-----CCCC--cEEEEEcCCcEEEEE
Confidence 3456788766433222 2466 8999999998876334567999986532 1222 334555666655443
No 112
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=55.50 E-value=17 Score=30.03 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=32.1
Q ss_pred cccccCCCE-E-EecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 289 TTHAPPGDT-L-VHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 289 ~~~~~~ge~-I-~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
...+.||.. . .......+++++|++|++.+...+.. ..+++||++
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~-~~l~~Gd~i 96 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQ-YPIAPGDFV 96 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEE-EEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEE-EEeCCCCEE
Confidence 455677763 2 11222468999999999999887754 679999976
No 113
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=54.76 E-value=13 Score=32.68 Aligned_cols=10 Identities=20% Similarity=0.763 Sum_probs=5.3
Q ss_pred HHHHHHHhhc
Q psy15517 64 WLACIWYAIG 73 (472)
Q Consensus 64 ~~aC~~~~i~ 73 (472)
+..++|+.+.
T Consensus 166 ~~~s~y~~~~ 175 (223)
T 1orq_C 166 VFDALWWAVV 175 (223)
T ss_dssp HHHHHHHHHH
T ss_pred chhHHHhHHh
Confidence 4445666553
No 114
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=53.80 E-value=7.3 Score=32.07 Aligned_cols=20 Identities=35% Similarity=0.404 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q psy15517 22 IGLLKTARLLRLVRVARKID 41 (472)
Q Consensus 22 ~~llrl~rllrl~r~~~~i~ 41 (472)
++++|++|++|+.|+.+...
T Consensus 106 lr~lRvlRllRv~Rllrl~r 125 (147)
T 2kyh_A 106 LAGLGLFRLVRLLRFLRILL 125 (147)
T ss_dssp HHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 115
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=53.46 E-value=8.5 Score=41.19 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=39.9
Q ss_pred ceeeeeccccceeeecCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15517 141 GGFNFKHLYLRTSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQR 194 (472)
Q Consensus 141 ~yw~~~tl~~~ttvGyGdi~p~t~~E~~~~i~~~i~g~~~~~~iig~i~~i~~~ 194 (472)
++|+++++ ++.| ++..|.+...+++.+++++++.++.+.-.+++++.+..
T Consensus 568 ~~~~~~~l---~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 568 LWFSLGAF---MQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHTTTTS---CC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66777877 8888 78899999999999999999999999999999999874
No 116
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=53.34 E-value=40 Score=27.21 Aligned_cols=60 Identities=7% Similarity=0.167 Sum_probs=40.2
Q ss_pred EecCCCcCeEEEEEeeeEEEEEcC-------eEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHh
Q psy15517 299 VHKGDVLTSLYFISRGSIEILRDD-------VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRD 365 (472)
Q Consensus 299 ~~~G~~~~~ly~I~~G~v~v~~~~-------~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~ 365 (472)
....+..|++|+|++|.+.+..++ .-...+++|+++--- ..-...-.|.++|.++.+...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP-------kGveH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP-------AECWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC-------TTCEEEEEECTTCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC-------CCccCcccCCCceEEEEEEeC
Confidence 344566799999999999887653 234678888876421 112344566777888877654
No 117
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=53.24 E-value=21 Score=28.02 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=31.3
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
...+.||...-.---...++++|++|.+.+...+.. ..+.+||.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i 96 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGE-ETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSCE-EEEETTEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCEE-EEECCCCEE
Confidence 344566665533333467999999999998876644 568888866
No 118
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=52.99 E-value=34 Score=28.94 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=31.6
Q ss_pred ccccCCCEEEec-C-CCcCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 290 THAPPGDTLVHK-G-DVLTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 290 ~~~~~ge~I~~~-G-~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
..++||...-.. . ....++++|++|.+.+...+. ...+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~-~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ-WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE-EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCE-EEEeCCCCEE
Confidence 456777765421 2 234799999999999988664 4579999976
No 119
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=52.62 E-value=36 Score=30.41 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=46.0
Q ss_pred hhcccccccCCCEEEe-cCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEE
Q psy15517 285 LKFKTTHAPPGDTLVH-KGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHK 361 (472)
Q Consensus 285 ~~~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~ 361 (472)
..+....++||..+-. .-...++.++|++|+..+..++.. ..+++||++--- ...++.+....-++++.+.
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~-~~l~~GD~~~~~-----~~~pH~~~n~g~~~~~yl~ 236 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENY-YPVTAGDIIWMG-----AHCPQWYGALGRNWSKYLL 236 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEE-EEEETTCEEEEC-----TTCCEEEEEESSSCEEEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEE-EEcCCCCEEEEC-----CCCCEEEEcCCCCCEEEEE
Confidence 3455667889877654 333467899999999999887655 479999976421 2244444444444555443
No 120
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=52.37 E-value=50 Score=29.44 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=43.2
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
...++||...-..- .+++.+|++|++.+...+.. ..+++||++=- +.+.++.+... ++++++.+.
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~~-~~l~~Gd~~~~-----p~~~~H~~~n~--~~~~~l~v~ 118 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGET-RTLREYDYVYL-----PAGEKHMLTAK--TDARVSVFE 118 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECSSCE-EEECTTEEEEE-----CTTCCCEEEEE--EEEEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEECCEE-EEECCCCEEEE-----CCCCCEEEEeC--CCEEEEEEE
Confidence 34567776654432 78899999999999887654 67999996532 22244544433 677777664
No 121
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=52.11 E-value=27 Score=27.66 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=32.1
Q ss_pred cccccCCCEEEecCCC-cCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 289 TTHAPPGDTLVHKGDV-LTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
...++||..+-.---. ..++++|++|.+.+...+. ...+.+||.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK-DVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE-EEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEECCE-EEEeCCCcEE
Confidence 4467788765332223 3789999999999988764 4568999876
No 122
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=51.62 E-value=34 Score=30.45 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=34.2
Q ss_pred cccccC-CCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 289 TTHAPP-GDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 289 ~~~~~~-ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
...++| |..+-..--+...+++|++|.+.+...+.. ..+.+||.+-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ 195 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVEGCT-VEMKFGTAYF 195 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEETTEE-EEECTTCEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEECCEE-EEECCCCEEE
Confidence 335788 776654444568899999999999887754 4599999764
No 123
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=51.30 E-value=30 Score=26.50 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=26.1
Q ss_pred CCcCeEEEEEeeeEEEEEcCeEE-EEeCCCCeec
Q psy15517 303 DVLTSLYFISRGSIEILRDDVVM-AILGKDDIYG 335 (472)
Q Consensus 303 ~~~~~ly~I~~G~v~v~~~~~~~-~~l~~G~~fG 335 (472)
...+++++|++|.+.+...+... ..+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSCEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEEEEEECCCCEEE
Confidence 35679999999999998876542 5799998764
No 124
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=50.96 E-value=64 Score=24.84 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=43.9
Q ss_pred ccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEE--EEecHhHH
Q psy15517 290 THAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDL--HKIHRDDL 367 (472)
Q Consensus 290 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l--~~l~~~~f 367 (472)
..+.||...-..--...++++|++|.+.+..++. ...+++|+.+=- . .+.++.......++++. +.++.+-+
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~-~~~l~~Gd~~~i----~-~~~~H~~~~~~~~~~~~~~i~f~~~~~ 112 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE-DFPVTKGDLIII----P-LDSEHHVINNNQEDFHFYTIWWDKEST 112 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEETTE-EEEEETTCEEEE----C-TTCCEEEEECSSSCEEEEEEEECHHHH
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEECCE-EEEECCCcEEEE----C-CCCcEEeEeCCCCCEEEEEEEECHHHH
Confidence 3455665332222346789999999999988765 457899986532 1 22344433333344443 45565555
Q ss_pred HHHHh
Q psy15517 368 LDVLD 372 (472)
Q Consensus 368 ~~ll~ 372 (472)
..++.
T Consensus 113 ~~~~~ 117 (128)
T 4i4a_A 113 LNFLT 117 (128)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 125
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=48.08 E-value=41 Score=29.84 Aligned_cols=72 Identities=8% Similarity=-0.003 Sum_probs=45.1
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
+....++||..+-.---+...+++|++|.+.+...+. ...+.+||.+= +.+.+.++......-++|.++.+.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~-~~~l~~Gd~i~----~ip~~~~H~~~n~~~~~~~~l~i~ 107 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDV-TRKMTALESAY----IAPPHVPHGARNDTDQEVIAIDIK 107 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTE-EEEEETTTCEE----EECTTCCEEEEECSSSCEEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCE-EEEECCCCEEE----EcCCCCcEeeEeCCCCcEEEEEEe
Confidence 3444588888776554557899999999999988664 46789998431 111223444333333446666654
No 126
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=48.05 E-value=37 Score=24.86 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=34.7
Q ss_pred CeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecH
Q psy15517 306 TSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHR 364 (472)
Q Consensus 306 ~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~ 364 (472)
.++++|++|.+.+...+. ...+.+||.+= + +.+.++. ..+.+++.++.++.
T Consensus 51 ~e~~~v~~G~~~~~~~~~-~~~l~~Gd~~~----i-p~~~~H~--~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRDQ-NITLQAGEMYV----I-PKGVEHK--PMAKEECKIMIIEP 101 (102)
T ss_dssp CEEEEEEESEEEEECSSC-EEEEETTEEEE----E-CTTCCBE--EEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEECCE-EEEEcCCCEEE----E-CCCCeEe--eEcCCCCEEEEEEc
Confidence 789999999999887664 45688998652 2 2223444 34447888887753
No 127
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=47.30 E-value=40 Score=26.08 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=29.8
Q ss_pred cccccCCCEEE--ecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 289 TTHAPPGDTLV--HKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 289 ~~~~~~ge~I~--~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
...+.||..+- ..-+..+.+|+|++|.+.+...+.. ..+.+||++
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~~-~~l~~Gd~i 76 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEK-IELQAGDWL 76 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTEE-EEEETTEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCEE-EEeCCCCEE
Confidence 34566776542 2222234577799999998887654 568999865
No 128
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=46.92 E-value=17 Score=30.75 Aligned_cols=49 Identities=12% Similarity=0.046 Sum_probs=35.4
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEc---CeEEEEeCCCCeec
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD---DVVMAILGKDDIYG 335 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~---~~~~~~l~~G~~fG 335 (472)
+....+.||...-.....++++++|++|++.+... +.....+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 44556788877655533468999999999887652 24567899999763
No 129
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=46.79 E-value=23 Score=32.29 Aligned_cols=69 Identities=12% Similarity=0.044 Sum_probs=44.7
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEEEc-CeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHh
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRD 365 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~ 365 (472)
...+.||..--......+++.+|++|++.+... ++ ...+++|+++=. +.+.++. .+..+.++++.+.+.
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~-~~~L~~Gds~y~-----p~~~~H~--~~N~~~Ar~l~V~k~ 143 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSS-SKKLTVDSYAYL-----PPNFHHS--LDCVESATLVVFERR 143 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CC-CEEECTTEEEEE-----CTTCCCE--EEESSCEEEEEEEEE
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCc-EEEEcCCCEEEE-----CCCCCEE--EEeCCCEEEEEEEeE
Confidence 445677765322223468999999999999887 44 467999987632 2223333 444678999988654
No 130
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=45.09 E-value=12 Score=33.17 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15517 21 LIGLLKTARLLRLVRVARKIDRYSE---YGAAVLLLLMATFALIAHWLACIWYA 71 (472)
Q Consensus 21 ~~~llrl~rllrl~r~~~~i~~~~~---~~~~~l~~l~~~~~~~~H~~aC~~~~ 71 (472)
.+|++|++|++|+.|..+.++...+ .....+..+.+.++++.-.+|++-+.
T Consensus 100 ~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~ 153 (229)
T 4dxw_A 100 VLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAI 153 (229)
T ss_dssp CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444443322 22222444444445555555654333
No 131
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=43.51 E-value=19 Score=36.25 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=36.5
Q ss_pred cccccccchhhHHHH-----------HHHHHHHHHHHHHHHhHHHHH---HHHHHHHH---hhHHHHHHHHHHHHHHHHH
Q psy15517 2 SEYHEILSKDFFFLQ-----------RTTTLIGLLKTARLLRLVRVA---RKIDRYSE---YGAAVLLLLMATFALIAHW 64 (472)
Q Consensus 2 ~~~~~~~P~~~~~~~-----------~~~~~~~llrl~rllrl~r~~---~~i~~~~~---~~~~~l~~l~~~~~~~~H~ 64 (472)
.|+.+++|..+.... .....+|++|++|++|++|+. +.++.+.. .....+..+++.+++..++
T Consensus 277 iDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~i 356 (514)
T 2r9r_B 277 IDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVIL 356 (514)
T ss_dssp HHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899998663321 112344444444444444443 33333221 1222244455556667788
Q ss_pred HHHHHHhh
Q psy15517 65 LACIWYAI 72 (472)
Q Consensus 65 ~aC~~~~i 72 (472)
+||++|++
T Consensus 357 f~~~~~~~ 364 (514)
T 2r9r_B 357 FSSAVYFA 364 (514)
T ss_dssp HHHHHHHH
T ss_pred HHhhhhee
Confidence 88887765
No 132
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=43.20 E-value=48 Score=26.68 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=30.8
Q ss_pred cccccCCCEEEecC-CCcCeEEEEEeeeEEEEEcCeE-----EEEeCCCCee
Q psy15517 289 TTHAPPGDTLVHKG-DVLTSLYFISRGSIEILRDDVV-----MAILGKDDIY 334 (472)
Q Consensus 289 ~~~~~~ge~I~~~G-~~~~~ly~I~~G~v~v~~~~~~-----~~~l~~G~~f 334 (472)
...+.||..+-..- ...+.+++|++|.+.+...+.. ...+.+||.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 34566776543222 2245899999999999876543 2678999864
No 133
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=42.12 E-value=40 Score=28.37 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=36.2
Q ss_pred CcCeEEEEEeeeEEEEEcC-------eEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHh
Q psy15517 304 VLTSLYFISRGSIEILRDD-------VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRD 365 (472)
Q Consensus 304 ~~~~ly~I~~G~v~v~~~~-------~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~ 365 (472)
+.++++++++|.+.+...+ ..-..+++||.|=. +.+. +.+-++..++..+.+.+.
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfll-----P~gv--pHsP~r~~e~v~lviErk 114 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLL-----PGNV--PHSPVRFADTVGIVVEQD 114 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEE-----CTTC--CEEEEECTTCEEEEEEEC
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEc-----CCCC--CcCCcccCCcEEEEEEec
Confidence 3569999999998887644 23567899988742 1122 334444567777777664
No 134
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=41.39 E-value=39 Score=27.73 Aligned_cols=46 Identities=9% Similarity=0.136 Sum_probs=31.4
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCe--------EEEEeCCCCee
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDV--------VMAILGKDDIY 334 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~--------~~~~l~~G~~f 334 (472)
...+.||..+-..--...++++|++|.+.+...+. ....+.+||++
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 34566776542211235679999999999987651 56679999875
No 135
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=40.57 E-value=37 Score=28.55 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=35.8
Q ss_pred CcCeEEEEEeeeEEEEEcC---eEEEEeCCCCeecccccccCCCCcceeEEEEcc-eEEEEEecHh
Q psy15517 304 VLTSLYFISRGSIEILRDD---VVMAILGKDDIYGENPCLHSTIGKSSSNVRALT-YCDLHKIHRD 365 (472)
Q Consensus 304 ~~~~ly~I~~G~v~v~~~~---~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~-~~~l~~l~~~ 365 (472)
+.++++++++|.+.+...+ .....+++||.|=- +. .-+.+.++.+ ++..+.+.+.
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~l-----P~--gvpH~P~r~~~e~~~lviE~~ 112 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLL-----PP--HVRHSPQRPEAGSACLVIERQ 112 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEE-----CT--TCCEEEEBCCTTCEEEEEEEC
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEe-----CC--CCCcCccccCCCCEEEEEEeC
Confidence 3579999999999887643 34577999998742 11 2233444455 6666666554
No 136
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=35.69 E-value=31 Score=28.00 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=42.8
Q ss_pred cccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEE--EEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 287 FKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVM--AILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~--~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
+....++||..+-.-.-+....++|++|..... .+... ..+++|+++=.-+ +..+.. +.+.++|.++.+
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~-~g~~~~~~~~~~Gd~~~~p~-----g~~H~p-~~~~e~~~~l~~ 116 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR-GGKAAGGDTAIAPGYGYESA-----NARHDK-TEFPVASEFYMS 116 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEET-TCGGGTSEEEESSEEEEECT-----TCEESC-CEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc-CCCEecceEeCCCEEEEECc-----CCccCC-eECCCCeEEEEE
Confidence 455678899888765555778899999999843 22222 5677888764422 122221 344566666554
No 137
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=35.44 E-value=38 Score=26.87 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=22.4
Q ss_pred cCeEEEEEeeeEEEE--EcCeEEEEeCCCCee
Q psy15517 305 LTSLYFISRGSIEIL--RDDVVMAILGKDDIY 334 (472)
Q Consensus 305 ~~~ly~I~~G~v~v~--~~~~~~~~l~~G~~f 334 (472)
..++++|++|.+.+. ..+ ....+++||.+
T Consensus 59 ~~e~~~vl~G~~~~~~~~~~-~~~~l~~Gd~~ 89 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLPDQG-RTEEVGPGEAI 89 (145)
T ss_dssp SCEEEEEEEECEEEEEGGGT-EEEEECTTCEE
T ss_pred CceEEEEEEeEEEEEEeECC-EEEEECCCCEE
Confidence 455677999999998 655 45679999865
No 138
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=35.43 E-value=88 Score=29.52 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=47.3
Q ss_pred CCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcce-EEEEEecH--hHHHHHH
Q psy15517 295 GDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTY-CDLHKIHR--DDLLDVL 371 (472)
Q Consensus 295 ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~-~~l~~l~~--~~f~~ll 371 (472)
|+.+-.--.+.+.+++|++|.+++...+.....+++||.+= .+.+. +.++.+.++ ..++.+.+ +.+...+
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i~g~~~~~l~~Gd~~~-----iPag~--~h~~~~~~~~~~~l~~~~g~~g~~~~~ 334 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAF-----IPGGV--EFKYYSEAYFSKVLFVSSGSDGLDQNL 334 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEETTSCCEEECTTCEEE-----ECTTC--CEEEEESSSSEEEEEEEESSSSHHHHH
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEECCeEEEEeCCCCEEE-----ECCCC--CEEEEecCCeEEEEEEecCccchhhee
Confidence 44554444567899999999999998874467899998652 22233 444555443 88888776 6666653
No 139
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=35.04 E-value=38 Score=30.94 Aligned_cols=69 Identities=9% Similarity=0.035 Sum_probs=41.9
Q ss_pred cccccCCCEEEe--cCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 289 TTHAPPGDTLVH--KGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 289 ~~~~~~ge~I~~--~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
...+.||...-. .....+++++|++|++.+...+.. ..+++||++=. +.+.++.......+.++++.+.
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~~-~~L~~GD~i~i-----p~~~~H~~~N~g~~~~~~l~v~ 142 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQV-HAMQPGGYAFI-----PPGADYKVRNTTGQHTRFHWIR 142 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSCE-EEECTTEEEEE-----CTTCCEEEECCSSSCEEEEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCEE-EEECCCCEEEE-----CCCCcEEEEECCCCCEEEEEEE
Confidence 345567765511 112357899999999999887654 57999986532 1223344333333556666654
No 140
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=34.84 E-value=56 Score=29.32 Aligned_cols=69 Identities=4% Similarity=-0.071 Sum_probs=42.7
Q ss_pred cccccCCCEEEecC--CCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 289 TTHAPPGDTLVHKG--DVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 289 ~~~~~~ge~I~~~G--~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
...++||...-..- ...+++.+|++|++++...+. ...+++||++-- +.+.++.......+.++++.+.
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~Gd~~~~-----~~~~~H~~~N~~~~~~~~l~v~ 133 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGK-TFALSEGGYLYC-----PPGSLMTFVNAQAEDSQIFLYK 133 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTE-EEEEETTEEEEE-----CTTCCCEEEECSSSCEEEEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCCEEEE-----CCCCCEEEEeCCCCCEEEEEEE
Confidence 34556665443221 124689999999999988665 467999997642 2224444444444567776664
No 141
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=34.32 E-value=1e+02 Score=27.77 Aligned_cols=70 Identities=11% Similarity=-0.072 Sum_probs=43.3
Q ss_pred cccccccCCCEEEe-cCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEc-ceEEEEEe
Q psy15517 287 FKTTHAPPGDTLVH-KGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRAL-TYCDLHKI 362 (472)
Q Consensus 287 ~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~-~~~~l~~l 362 (472)
+....+.||..+-. .--..+++++|++|++.+...+.. ..+++||++=- +.+.++.+..... ++++.+..
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~~-~~l~~GD~i~i-----~~~~~H~~~n~~~~~~~~~l~~ 255 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNEW-YPVEKGDYIFM-----SAYVPQAAYAVGREEPLMYVYS 255 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTEE-EEEETTCEEEE-----CTTCCEEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCEE-EEECCCCEEEE-----CCCCCEEEEeCCCCCCEEEEEE
Confidence 34456778876633 223467899999999999887754 67999997632 2224444444333 44555443
No 142
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=34.15 E-value=93 Score=29.67 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=53.3
Q ss_pred ccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHHH
Q psy15517 290 THAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLD 369 (472)
Q Consensus 290 ~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~~ 369 (472)
..++||+..-..-..+..+|.|.+|.-.+...+.. ...++||.|---+ -...+..+.+++.++.++-.-+.+
T Consensus 284 ~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~~~-~~w~~gD~fvvP~-------w~~h~~~n~~~a~Lf~~~D~Pl~~ 355 (368)
T 3nw4_A 284 HRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGET-TKLEKGDMFVVPS-------WVPWSLQAETQFDLFRFSDAPIME 355 (368)
T ss_dssp EEECTTCBCCCEEESSCEEEEEEESCEEEEETTEE-EEECTTCEEEECT-------TCCEEEEESSSEEEEEEESHHHHH
T ss_pred EEECCCCccCCeeccccEEEEEEeCcEEEEECCEE-EEecCCCEEEECC-------CCcEEEEeCCCEEEEEEeCHHHHH
Confidence 34566665544444567999999999888877644 5589999885422 234555677999999999887777
Q ss_pred HHh
Q psy15517 370 VLD 372 (472)
Q Consensus 370 ll~ 372 (472)
.|.
T Consensus 356 ~LG 358 (368)
T 3nw4_A 356 ALS 358 (368)
T ss_dssp HTT
T ss_pred HhC
Confidence 654
No 143
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=34.04 E-value=49 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=24.6
Q ss_pred cCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 305 LTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 305 ~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
..++++|++|.+.+...+.....+.+||.+
T Consensus 64 ~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~ 93 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYEDIGAVMLEAGGSA 93 (134)
T ss_dssp SCEEEEEEESEEEEEETTTEEEEEETTCEE
T ss_pred CcEEEEEEeCEEEEEECCcEEEEecCCCEE
Confidence 378999999999998877345679999865
No 144
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=33.60 E-value=26 Score=33.86 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=33.6
Q ss_pred ccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 288 KTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
....+.||+.+-..--...++|||++|+-.....+.....+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEEEEEcCCCEEE
Confidence 455677887775544455689999999876544344456789999763
No 145
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=33.16 E-value=55 Score=31.05 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=44.5
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEE-EEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHH
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEI-LRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDL 367 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v-~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f 367 (472)
...+.||+..-.---...++++|++|+..+ ..++ ....+++||+|=. +.+.++.......+++.++.+....+
T Consensus 104 ~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g-~~~~l~~GD~~~i-----P~g~~H~~~n~~~~~~~~l~v~d~p~ 177 (354)
T 2d40_A 104 LQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDG-ERTPMNEGDFILT-----PQWRWHDHGNPGDEPVIWLDGLDLPL 177 (354)
T ss_dssp EEEECTTCEEEEEEESSCEEEEEEECSSCEEEETT-EEEECCTTCEEEE-----CTTSCEEEECCSSSCEEEEEEECHHH
T ss_pred EEEECCCCCcCCeecCcceEEEEEEEEEEEEEECC-EEEEEcCCCEEEE-----CCCCcEEeEeCCCCCEEEEEEECchh
Confidence 445778877643333467999999999877 4444 4567999997732 12233333333334566666654433
Q ss_pred H
Q psy15517 368 L 368 (472)
Q Consensus 368 ~ 368 (472)
.
T Consensus 178 ~ 178 (354)
T 2d40_A 178 V 178 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 146
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=32.91 E-value=1.9e+02 Score=25.90 Aligned_cols=67 Identities=12% Similarity=-0.053 Sum_probs=43.6
Q ss_pred cccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecH
Q psy15517 291 HAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHR 364 (472)
Q Consensus 291 ~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~ 364 (472)
.+.+|+.+-..-.......+|++|.+.+-..+.....+.+|+... +.+ ....+++|.++++++.++.
T Consensus 188 ~L~~g~~~~~~~~~~~~~l~v~~G~v~v~g~~~~~~~l~~gd~~~----l~~---~~~l~l~a~~~a~~LL~dl 254 (256)
T 2vec_A 188 VLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAF----IRD---EANITLVADSPLRALLIDL 254 (256)
T ss_dssp EECTTCEEEEECSSSEEEEEEEESCEEEEETTEEEEEECTTCEEE----EES---CSEEEEEESSSEEEEEEEE
T ss_pred EECCCCEEEEecCCCeEEEEEEECEEEECCccccceEECCCCEEE----ECC---CCeEEEEeCCCCEEEEEEe
Confidence 567888776654443466678899999865332234578877543 222 2356788888999988763
No 147
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=31.87 E-value=52 Score=29.28 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=26.2
Q ss_pred cCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 305 LTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 305 ~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
.+++..|++|.+.+..++.....+++||.|-
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~~~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGSSLTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEETTSCEEEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEeCCCCEEEECCCCEEE
Confidence 4689999999999998776667899999774
No 148
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=31.50 E-value=62 Score=29.46 Aligned_cols=57 Identities=5% Similarity=0.061 Sum_probs=37.4
Q ss_pred CCCcCeEEEEEeeeEEEEEcC---eEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHh
Q psy15517 302 GDVLTSLYFISRGSIEILRDD---VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRD 365 (472)
Q Consensus 302 G~~~~~ly~I~~G~v~v~~~~---~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~ 365 (472)
-+..+++|++++|.+.+...+ ..-..+++|++|=- + ..-+.+-++..+|..+.|.+.
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfll-----P--~gv~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLL-----P--ARVPHSPQRFANTVGLVVERR 107 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEE-----C--TTCCEEEEECTTCEEEEEEEC
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEe-----C--CCCCcCCcccCCeEEEEEeec
Confidence 345789999999998776533 23467889887732 1 223444555667888777754
No 149
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=31.48 E-value=1.2e+02 Score=27.66 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=51.4
Q ss_pred ccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHh
Q psy15517 288 KTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRD 365 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~ 365 (472)
+...|.+|+.+..+... +.++.+++|...+...+.. ..|.+||.. +.. ....++..+.++|.++.+..+
T Consensus 210 eV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~~~q~-~~L~~~DsL-----LIp--a~~~y~~~r~~gsv~L~I~~~ 278 (286)
T 2qnk_A 210 QVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTMGGRR-LSLAPDDSL-----LVL--AGTSYAWERTQGSVALSVTQD 278 (286)
T ss_dssp EEEEECSEEEEECCCSS-CEEEEEEESCEEEEETTEE-EEECTTEEE-----EEC--TTCCEEEEECTTCEEEEEEEC
T ss_pred EEEEEcCCccccccCcC-cEEEEEEcCceEEEECCeE-EeccCCCEE-----Eec--CCCeEEEEecCCeEEEEEEEC
Confidence 44558999999988887 9999999999977665543 457888743 322 345678888899998887643
No 150
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=31.40 E-value=94 Score=29.22 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=34.5
Q ss_pred cccccccCCCEEEecCCC-cCeEEEEEeeeEEEEE---cCe-EEEEeCCCCeec
Q psy15517 287 FKTTHAPPGDTLVHKGDV-LTSLYFISRGSIEILR---DDV-VMAILGKDDIYG 335 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~---~~~-~~~~l~~G~~fG 335 (472)
+....+.||..+-..-.+ .+++++|++|++.+.. .+. ....+++||+|=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 344567788766443233 3899999999999876 443 467899999764
No 151
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=30.97 E-value=55 Score=25.57 Aligned_cols=12 Identities=0% Similarity=-0.418 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhc
Q psy15517 62 AHWLACIWYAIG 73 (472)
Q Consensus 62 ~H~~aC~~~~i~ 73 (472)
.-..|+++|.+.
T Consensus 40 ~~~~a~~~~~~E 51 (122)
T 2ih3_C 40 LLAGSYLAVLAE 51 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhheee
Confidence 334555555554
No 152
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=29.95 E-value=25 Score=33.32 Aligned_cols=15 Identities=20% Similarity=-0.019 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhH
Q psy15517 19 TTLIGLLKTARLLRL 33 (472)
Q Consensus 19 ~~~~~llrl~rllrl 33 (472)
.+++|++|++|++|.
T Consensus 97 ~r~lr~~R~lrl~r~ 111 (355)
T 3beh_A 97 WSLYCAVWLLKPLRD 111 (355)
T ss_dssp GGGGGGGGGSHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 153
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=29.93 E-value=81 Score=26.73 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=23.3
Q ss_pred CeEEEEEeeeEEEEEcCeE----EEEeCCCCee
Q psy15517 306 TSLYFISRGSIEILRDDVV----MAILGKDDIY 334 (472)
Q Consensus 306 ~~ly~I~~G~v~v~~~~~~----~~~l~~G~~f 334 (472)
+++++|++|++.+...+.. ...+++||.+
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v 129 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAKWISMEPGTVV 129 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEEEEEECTTCEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEE
Confidence 6999999999998875433 4679999965
No 154
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=29.55 E-value=71 Score=27.32 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=33.2
Q ss_pred cccccccCCCEEEecCCC-cCeEEEEEeeeEEEEEc------Ce-EEEEeCCCCeec
Q psy15517 287 FKTTHAPPGDTLVHKGDV-LTSLYFISRGSIEILRD------DV-VMAILGKDDIYG 335 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G~~-~~~ly~I~~G~v~v~~~------~~-~~~~l~~G~~fG 335 (472)
+....+.||...-..--+ .+++++|++|++.+... +. ....+++||.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 334567788765433223 57999999999988653 22 267899999763
No 155
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=28.47 E-value=49 Score=32.26 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=37.0
Q ss_pred hcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE---cCeEEEEeCCCCee
Q psy15517 286 KFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR---DDVVMAILGKDDIY 334 (472)
Q Consensus 286 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~~~~~~l~~G~~f 334 (472)
.+....+.||..+-..-...+++++|++|+..+.. .+.....+++||++
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEE
Confidence 34566788998776665567899999999988764 23556788999877
No 156
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=28.39 E-value=65 Score=29.15 Aligned_cols=68 Identities=7% Similarity=-0.059 Sum_probs=41.4
Q ss_pred ccccCCCEEEecC--CCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEec
Q psy15517 290 THAPPGDTLVHKG--DVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIH 363 (472)
Q Consensus 290 ~~~~~ge~I~~~G--~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~ 363 (472)
..++||...-..- ...+++.+|++|++++...+. ...+++||++-- +.+.++.......+.++++.+.
T Consensus 67 ~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~GD~~~~-----~~~~~H~~~N~~~~~~~~l~v~ 136 (274)
T 1sef_A 67 ATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE-THELEAGGYAYF-----TPEMKMYLANAQEADTEVFLYK 136 (274)
T ss_dssp EEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSC-EEEEETTEEEEE-----CTTSCCEEEESSSSCEEEEEEE
T ss_pred EEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCCEEEE-----CCCCCEEEEeCCCCCEEEEEEE
Confidence 4556665443221 124679999999999988665 457999997642 2223444443334556666654
No 157
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=28.23 E-value=81 Score=29.19 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=33.1
Q ss_pred cccccCCCEEEe-cCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 289 TTHAPPGDTLVH-KGDVLTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 289 ~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
.....||...-. ..+..+++++|++|++.+...+.. ..+++||++
T Consensus 50 ~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~-~~l~~Gd~~ 95 (337)
T 1y3t_A 50 LLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGER-YLLISGDYA 95 (337)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTEE-EEECTTCEE
T ss_pred EEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCEE-EEECCCCEE
Confidence 445778876533 333378999999999999876644 679999965
No 158
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=28.09 E-value=1.2e+02 Score=28.72 Aligned_cols=71 Identities=7% Similarity=-0.151 Sum_probs=42.8
Q ss_pred ccccccCCCEEEecCCCc-CeEEEEEeeeEEEEEc---C-eEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEe
Q psy15517 288 KTTHAPPGDTLVHKGDVL-TSLYFISRGSIEILRD---D-VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKI 362 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~-~~ly~I~~G~v~v~~~---~-~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l 362 (472)
....+.||...-..-.+. +++++|++|++.+... + .....+++||.+=. +.+.++.......++++++.+
T Consensus 260 ~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~i-----p~~~~H~~~n~~~~~~~~l~v 334 (385)
T 1j58_A 260 ALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYV-----PFAMGHYVENIGDEPLVFLEI 334 (385)
T ss_dssp EEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEE-----CTTCBEEEEECSSSCEEEEEE
T ss_pred EEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEE-----CCCCeEEEEECCCCCEEEEEE
Confidence 344577887664433344 8999999999987753 1 35567999997632 122333333333345666665
Q ss_pred c
Q psy15517 363 H 363 (472)
Q Consensus 363 ~ 363 (472)
-
T Consensus 335 ~ 335 (385)
T 1j58_A 335 F 335 (385)
T ss_dssp E
T ss_pred E
Confidence 3
No 159
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=26.75 E-value=1.1e+02 Score=29.56 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=49.4
Q ss_pred ccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEE-cceEEEEEecHhH
Q psy15517 288 KTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRA-LTYCDLHKIHRDD 366 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A-~~~~~l~~l~~~~ 366 (472)
....++||+..-..-...+.+|+|++|+..+..++ ....+++||+|-.-+ ...+...-.. .+++.++.+.-..
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~g-e~~~~~~GD~~~iP~-----g~~H~~~N~g~~e~~~ll~i~D~P 370 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGG-KRFDWSEHDIFCVPA-----WTWHEHCNTQERDDACLFSFNDFP 370 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEETT-EEEEECTTCEEEECT-----TCCEEEEECCSSCCEEEEEEESHH
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEECC-EEEEEeCCCEEEECC-----CCeEEeEeCCCCCCeEEEEeeCHH
Confidence 44566777766554445678999999998766655 456799999874321 1233332222 3578888887666
Q ss_pred HHHHH
Q psy15517 367 LLDVL 371 (472)
Q Consensus 367 f~~ll 371 (472)
+.+.|
T Consensus 371 l~~~L 375 (394)
T 3bu7_A 371 VMEKL 375 (394)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 65543
No 160
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=26.69 E-value=1.4e+02 Score=27.99 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=32.7
Q ss_pred cccccCCCEEEec-CCCcCeEEEEEeeeEEEEE---cC-eEEEEeCCCCee
Q psy15517 289 TTHAPPGDTLVHK-GDVLTSLYFISRGSIEILR---DD-VVMAILGKDDIY 334 (472)
Q Consensus 289 ~~~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~---~~-~~~~~l~~G~~f 334 (472)
...+.||...-.. ....+++++|++|++.+.. ++ .....+++||++
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~ 106 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLW 106 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEE
Confidence 4456788765433 3337899999999998876 33 355789999865
No 161
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=26.04 E-value=83 Score=26.87 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=44.2
Q ss_pred hcccccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEE--cceEEEEEe
Q psy15517 286 KFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRA--LTYCDLHKI 362 (472)
Q Consensus 286 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A--~~~~~l~~l 362 (472)
.+....+.||..+-...-.+.++.+|++|... .+. ..+.+||++=.- .....+..+ .+.|.++..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~--de~---~~~~~Gd~~~~p-------~g~~H~p~a~~~~gc~~l~~ 192 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR--DET---DRFGAGDIEIAD-------QELEHTPVAERGLDCICLAA 192 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE--CSS---SEEETTCEEEEC-------SSCCCCCEECSSSCEEEEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE--CCc---EEECCCeEEEeC-------cCCccCCEeCCCCCEEEEEE
Confidence 44567789999998887788999999999866 222 357788875331 122333444 677887765
No 162
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=25.87 E-value=80 Score=28.71 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=37.8
Q ss_pred hhcccccccCCCEEEe-cCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeec
Q psy15517 285 LKFKTTHAPPGDTLVH-KGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 285 ~~~~~~~~~~ge~I~~-~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG 335 (472)
..+....++||..+-. +-...++.++|++|+..+..++ ....+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~-~~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQ-DWVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETT-EEEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECC-EEEEeCCCCEEE
Confidence 4466778899998875 3334468899999999988765 446799999763
No 163
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=24.40 E-value=1.2e+02 Score=25.66 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=30.3
Q ss_pred ccCccccCCCHHHHHHHhhhcccccccCCCEEEecCCCcCeEEEE
Q psy15517 267 SNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFI 311 (472)
Q Consensus 267 ~~~~~F~~~~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I 311 (472)
-+.|.|.+++....++++.. .+||.|+++...++++-+.
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit 50 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLV 50 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEE
Confidence 35899999999888887666 2599999998877664443
No 164
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=24.34 E-value=1.9e+02 Score=27.18 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=48.1
Q ss_pred cccccCCCEEEecCCCcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHhHHH
Q psy15517 289 TTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLL 368 (472)
Q Consensus 289 ~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~~f~ 368 (472)
...++||..--.--.+...+|+|++|+.++...+ ....+++||.|---+. ......+.+++.++.+.-..+.
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v~~-~~~~~~~GD~~~vP~~-------~~H~~~n~e~~~l~~~~d~p~~ 343 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGN-ETFSFSAKDIFVVPTW-------HGVSFQTTQDSVLFSFSDRPVQ 343 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEETT-EEEEEETTCEEEECTT-------CCEEEEEEEEEEEEEEESHHHH
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEECC-EEEEEcCCCEEEECCC-------CeEEEEeCCCEEEEEEcCHHHH
Confidence 3355666554333334568999999999888765 4467999998754221 1233444578888888766555
Q ss_pred HHH
Q psy15517 369 DVL 371 (472)
Q Consensus 369 ~ll 371 (472)
+-|
T Consensus 344 ~~l 346 (354)
T 2d40_A 344 EAL 346 (354)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
No 165
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=23.31 E-value=92 Score=27.83 Aligned_cols=47 Identities=17% Similarity=0.055 Sum_probs=33.4
Q ss_pred cccccccCCCEEEecC-CCcCeEEEEEeeeEEEEEcCeEEEEeCCCCee
Q psy15517 287 FKTTHAPPGDTLVHKG-DVLTSLYFISRGSIEILRDDVVMAILGKDDIY 334 (472)
Q Consensus 287 ~~~~~~~~ge~I~~~G-~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~f 334 (472)
+....+.||..+-..- ...+++++|++|++.+...+. ...+++||++
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~-~~~l~~GD~i 228 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN-WIPVKKGDYI 228 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSC-EEEEETTCEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCE-EEEeCCCCEE
Confidence 3456678887653322 235789999999999987664 4579999965
No 166
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=23.13 E-value=94 Score=17.37 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHHHH
Q psy15517 21 LIGLLKTARLLRLVRVA 37 (472)
Q Consensus 21 ~~~llrl~rllrl~r~~ 37 (472)
.++.+|.+|.+|-+|..
T Consensus 5 ~l~~lrtlR~LRpLr~i 21 (28)
T 2lcm_A 5 TIKSLRVLRVLRPLKTI 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcchHHH
Confidence 34445555555544443
No 167
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=22.97 E-value=63 Score=30.85 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=33.3
Q ss_pred ccccccCCCEEEecCCCcCeEEEEEeeeEE-EEEcCeEEEEeCCCCeec
Q psy15517 288 KTTHAPPGDTLVHKGDVLTSLYFISRGSIE-ILRDDVVMAILGKDDIYG 335 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~-v~~~~~~~~~l~~G~~fG 335 (472)
....+.||+..-..--..+++|||++|+-. +..++ ....+++||++=
T Consensus 106 ~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG-~~~~~~~GD~v~ 153 (368)
T 3nw4_A 106 AIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNG-DPVRMSRGDLLL 153 (368)
T ss_dssp EEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETT-EEEEEETTCEEE
T ss_pred EEEEECCCCccCceecccceEEEEEecceEEEEECC-EEEEEeCCCEEE
Confidence 345678888776655556899999999975 44444 455688998763
No 168
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=22.22 E-value=69 Score=31.47 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=37.1
Q ss_pred hcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE---cCeEEEEeCCCCeec
Q psy15517 286 KFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR---DDVVMAILGKDDIYG 335 (472)
Q Consensus 286 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~~~~~~l~~G~~fG 335 (472)
.+....+.||..+-..--.++++++|++|++.+.. .+.....+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEE
Confidence 34456788998776664457999999999987763 224677899999773
No 169
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=22.13 E-value=93 Score=27.64 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=35.8
Q ss_pred CcCeEEEEEeeeEEEEEcCeEEEEeCCCCeecccccccCCCCcceeEEEEcceEEEEEecHh
Q psy15517 304 VLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRD 365 (472)
Q Consensus 304 ~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~l~~~~~~~~~~~~A~~~~~l~~l~~~ 365 (472)
+.+++.+|++|++.+... ..-..+++||.+-. . .-...+-.+.+.++.+....+
T Consensus 64 p~dE~~~VleG~~~lt~~-g~~~~~~~Gd~~~i-----p--~G~~~~w~~~~~~~~~y~~~~ 117 (238)
T 3myx_A 64 PYTEMLVMHRGSVTLTSG-TDSVTLSTGESAVI-----G--RGTQVRIDAQPESLWAFCAST 117 (238)
T ss_dssp SSEEEEEEEESEEEEEET-TEEEEEETTCEEEE-----C--TTCCEEEEECTTEEEEEEEEC
T ss_pred CCcEEEEEEEeEEEEECC-CeEEEEcCCCEEEE-----C--CCCEEEEEecCCeEEEEEecc
Confidence 458999999999999874 45556899986532 1 123455566666666655443
No 170
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.29 E-value=41 Score=21.28 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=13.8
Q ss_pred HHHHhhCcHhHHHHHHH
Q psy15517 243 NSVLKGFPECLQADICL 259 (472)
Q Consensus 243 ~~ll~~Lp~~L~~~i~~ 259 (472)
.++++.||..++.|+..
T Consensus 18 ~eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILS 34 (48)
T ss_dssp GGGTTTSCHHHHHHHTT
T ss_pred HHHHHHCcHHHHHHHHh
Confidence 46899999999988753
No 171
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=21.15 E-value=1.1e+02 Score=29.18 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=32.7
Q ss_pred ccccccCCCEEEecCCCcCeEEEEEeeeEEEEE---cCeE-EEEeCCCCee
Q psy15517 288 KTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR---DDVV-MAILGKDDIY 334 (472)
Q Consensus 288 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~~~-~~~l~~G~~f 334 (472)
....+.||...-..--+..++++|++|++++.. .+.. ...+++||++
T Consensus 82 ~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~ 132 (385)
T 1j58_A 82 VNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW 132 (385)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred EEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE
Confidence 345667887654332337899999999999876 3332 4589999865
No 172
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=21.04 E-value=80 Score=30.92 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=37.2
Q ss_pred hcccccccCCCEEEecCCCcCeEEEEEeeeEEEEE--c-CeEEEEeCCCCee
Q psy15517 286 KFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILR--D-DVVMAILGKDDIY 334 (472)
Q Consensus 286 ~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~-~~~~~~l~~G~~f 334 (472)
.+....+.||..+-..-..++++++|++|+..+.. . ......+++||++
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQ 113 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEE
Confidence 45567788998887775557899999999988754 2 2456778888876
No 173
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=20.73 E-value=2.1e+02 Score=19.54 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHh-CCCCHH--HHHHHHHHHHHHHH
Q psy15517 200 ARYHTQMLRVREFIRF-HQIPNP--LRQRLEEYFQHAWT 235 (472)
Q Consensus 200 ~~~~~~~~~i~~~m~~-~~i~~~--L~~ri~~y~~~~~~ 235 (472)
.-|++-+.++.+||.. .++++. ++.|+.+++.....
T Consensus 22 ~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~ 60 (64)
T 2db7_A 22 LGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYAS 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhh
Confidence 3788999999999986 567765 99999999976543
No 174
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=20.48 E-value=1.2e+02 Score=27.35 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q psy15517 20 TLIGLLKTARLLRLVRVARKID 41 (472)
Q Consensus 20 ~~~~llrl~rllrl~r~~~~i~ 41 (472)
+.+|++|++|++|+.|..+.+.
T Consensus 114 ~~lr~~RilR~lrl~~~~~~l~ 135 (285)
T 3rvy_A 114 EILRVLRVLRLFRLVTAVPQMR 135 (285)
T ss_dssp THHHHHGGGGGGHHHHSSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655544443
Done!