RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15517
(472 letters)
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 104 bits (259), Expect = 1e-26
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
Query: 197 SGTARYHTQMLRVREFIRFHQIPNPLRQRLEEYFQHAWTYTNGIDMNSVLKGFPECLQAD 256
S +Y + +V +++ FH++P RQ++ +Y++H + D +S+L L+ +
Sbjct: 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREE 60
Query: 257 ICLHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSI 316
I R L+++ F A P + A+ K K PGD ++ +G + +YFI G +
Sbjct: 61 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 120
Query: 317 EILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+L L +GE T G+ +++VRA TYC L+ + D+ +VL+ YP
Sbjct: 121 SVLTKGNKEMKLSDGSYFGE--ICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 178
Query: 377 FYNSFTENL 385
+F
Sbjct: 179 MRRAFETVA 187
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 65.1 bits (158), Expect = 2e-13
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Query: 259 LHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEI 318
+ + F + G+T++ +GD + Y I +G +++
Sbjct: 15 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDV 74
Query: 319 LRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
++ +G+ +GE ++ T ++ V+A T L I RD +L
Sbjct: 75 YVNNEWATSVGEGGSFGELALIYGT--PRAATVKAKTNVKLWGIDRDSYRRILMGSTL 130
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 64.8 bits (157), Expect = 2e-13
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 4/124 (3%)
Query: 262 NRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321
N L++ F+ P L + + P G + G+ ++F+ GS+ +
Sbjct: 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP 68
Query: 322 DVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSF 381
+ V G + S+ V A T L +H D + PE F
Sbjct: 69 NPVELGPGAFFGE----MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF 124
Query: 382 TENL 385
+
Sbjct: 125 RKTA 128
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 64.1 bits (155), Expect = 6e-13
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 4/123 (3%)
Query: 259 LHLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEI 318
+ + L AF+ P LR + L + G TL +GD+ T+ Y + GS+++
Sbjct: 19 VDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDV 78
Query: 319 LRDDVVMAILGKDDIYGENPCLHSTI----GKSSSNVRALTYCDLHKIHRDDLLDVLDLY 374
+ + + +L +I ++D + + Y
Sbjct: 79 KVSETSSHQDAVTICTLGIGTAFGESILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 138
Query: 375 PEF 377
++
Sbjct: 139 RQY 141
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 137
Score = 58.0 bits (139), Expect = 6e-11
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 265 LLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-- 322
+ F+ L A+ + K LV +GD + + FI RG +E + D
Sbjct: 7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG 66
Query: 323 ----VVMAILGKDDIYGENPCLHSTIGKSSS-------NVRALTYCDLHKIHRDDLLDVL 371
++L + D G+ + KS S V+ALT + + D+L V
Sbjct: 67 RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVA 126
Query: 372 DLYPE 376
+
Sbjct: 127 SQFRR 131
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 57.8 bits (139), Expect = 7e-11
Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 6/119 (5%)
Query: 263 RNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD 322
+ + FK P + + G+ ++ +GD + Y I RG+ +I
Sbjct: 15 QEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKC 74
Query: 323 ----VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEF 377
+ +GE +++T ++ + A + L + R ++
Sbjct: 75 DGVGRCVGNYDNRGSFGELALMYNT--PRAATITATSPGALWGLDRVTFRRIIVKNNAK 131
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 55.9 bits (134), Expect = 2e-10
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Query: 259 LHLNRNLLSNCSAFKGASPGCLRALSLKFKT-THAPPGDTLVHKGDVLTSLYFISRGSIE 317
L + + L + A S R L+ +HA G L ++G+ TS Y I +GS+
Sbjct: 5 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVN 64
Query: 318 ILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
++ + + L + +++S V C ++ ++D +L
Sbjct: 65 VVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA 123
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 56.3 bits (135), Expect = 2e-10
Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 8/128 (6%)
Query: 265 LLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDD-- 322
LS S + ++ + G +V +G+ + I GS +L+
Sbjct: 3 FLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSE 62
Query: 323 ----VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFY 378
V + LG D +GE L + ++ V A K+ R VL +
Sbjct: 63 NEEFVEVGRLGPSDYFGEIALLMNR--PRAATVVARGPLKCVKLDRPRFERVLGPCSDIL 120
Query: 379 NSFTENLE 386
+
Sbjct: 121 KRNIQQYN 128
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 56.3 bits (135), Expect = 3e-10
Identities = 14/132 (10%), Positives = 35/132 (26%), Gaps = 9/132 (6%)
Query: 264 NLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDV 323
+ + + K + T G+ ++ +GD S + + G + I
Sbjct: 2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRK 61
Query: 324 VMAILGKDDIYGENPCLHSTI---------GKSSSNVRALTYCDLHKIHRDDLLDVLDLY 374
+ + ++ CL +++ A+ + +L
Sbjct: 62 GKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPC 121
Query: 375 PEFYNSFTENLE 386
E E
Sbjct: 122 MEIMKRNIATYE 133
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 54.9 bits (131), Expect = 6e-10
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 276 SPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGK 330
+ L P TL+H+G+ +LY+I +GS+ +L +++++ L +
Sbjct: 2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQ 61
Query: 331 DDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
D GE +S+ VRA T C++ +I ++ + P+ + +
Sbjct: 62 GDFIGELGLFEEGQERSAW-VRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 115
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 53.3 bits (127), Expect = 3e-09
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 9/129 (6%)
Query: 260 HLNRNLLSNCSAFKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIE-- 317
HL R++ + + L + + T+ +GD+ +L+++ G I+
Sbjct: 3 HLLRDV------WSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKIL 56
Query: 318 -ILRDDVVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
+ SS A+ + I + + +L
Sbjct: 57 REGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTS 116
Query: 377 FYNSFTENL 385
F F + L
Sbjct: 117 FCRYFLKAL 125
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 51.7 bits (123), Expect = 8e-09
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 280 LRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD-----DVVMAILGKDDIY 334
L L T+++ GD +L+FI +GS+ IL + ++++ L D +
Sbjct: 5 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF 64
Query: 335 GENPCLHSTI--GKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
GE + S+ VRA C++ +I ++ E + +
Sbjct: 65 GELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQM 117
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 48.9 bits (117), Expect = 2e-08
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAII 192
+VG+G+ +P+T FT+ ++++G +A + +
Sbjct: 40 ATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300,
N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 147
Score = 47.3 bits (111), Expect = 4e-07
Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 8/129 (6%)
Query: 264 NLLSNCSAFKGASPGCLRAL--SLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRD 321
+ L F+G ++ +K G+T++ G+ T L F+ +G I I+ +
Sbjct: 6 DTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTN 65
Query: 322 D-----VVMAILGKDDIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPE 376
V+ + + +SS V T I + +L L Y
Sbjct: 66 AKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVA-HTEVHTVCISKAFVLSDLFRYDI 124
Query: 377 FYNSFTENL 385
F ++ +
Sbjct: 125 FRLNYMNIV 133
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 43.8 bits (102), Expect = 4e-06
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 280 LRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEIL-----RDDVVMAILGKDDIY 334
L+ L K G+ + H+ D + + + G+++ + + + I
Sbjct: 3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 62
Query: 335 GENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
S + V A + I ++ LD+L E F +++
Sbjct: 63 ASGFIFSSEPRFPVN-VVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDV 112
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 38.0 bits (88), Expect = 3e-04
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQR 194
++G+G + P L L G L A + A R
Sbjct: 73 ATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 36.1 bits (83), Expect = 0.001
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 152 TSVGFGNVAPNTDNEKIFTILVMLVGSLMYASIFGNVSAIIQR 194
T+VG+G++ P T + ++VM+ G + + ++
Sbjct: 53 TTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG 95
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 139
Score = 34.6 bits (78), Expect = 0.007
Identities = 14/106 (13%), Positives = 30/106 (28%)
Query: 280 LRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKDDIYGENPC 339
LR + G ++ G+ +TS+ F+ G I++ + G +
Sbjct: 17 LRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLI 76
Query: 340 LHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
++ A+ L V + +N
Sbjct: 77 GKLYPTGNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNY 122
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 132
Score = 30.8 bits (68), Expect = 0.13
Identities = 13/114 (11%), Positives = 25/114 (21%), Gaps = 5/114 (4%)
Query: 272 FKGASPGCLRALSLKFKTTHAPPGDTLVHKGDVLTSLYFISRGSIEILRDDVVMAILGKD 331
F++ G + ++ + G + + I
Sbjct: 7 ANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFY 66
Query: 332 DIYGENPCLHSTIGKSSSNVRALTYCDLHKIHRDDLLDVLDLYPEFYNSFTENL 385
G+ C+HS V A ++ L P L
Sbjct: 67 LTSGDMFCMHSGC-----LVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAIL 115
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 29.5 bits (65), Expect = 0.33
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 4/87 (4%)
Query: 289 TTHAPPGDTLVHKGDVLTS--LYFISRGSIEILRDDVVMAILGKDDIYGENPCLHSTI-- 344
T GD +++ G Y + G + + D L + +
Sbjct: 2 TVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFG 61
Query: 345 GKSSSNVRALTYCDLHKIHRDDLLDVL 371
+ A T L + + ++L
Sbjct: 62 QERIYFAEAATDVRLEPLPENPDPELL 88
>d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens) [TaxId:
9606]}
Length = 145
Score = 27.5 bits (61), Expect = 2.1
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 336 ENPCLHSTIGKSSSNVRALT 355
CL S +G+ S VR L
Sbjct: 76 GPTCLSSLLGQLSGQVRLLL 95
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 27.3 bits (60), Expect = 4.3
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 97 GTGGPSIKTTTLIGLLKTARLLRLVRVARKIDRYSEYGAAGKGW 140
G IKT +TA+L +L+R+ ++ ++++ GW
Sbjct: 249 ALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKF--GFPGW 290
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.421
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,785,841
Number of extensions: 84579
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 28
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)