RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15518
         (195 letters)



>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia
           coli [TaxId: 562]}
          Length = 385

 Score = 28.4 bits (62), Expect = 0.52
 Identities = 13/58 (22%), Positives = 17/58 (29%)

Query: 29  HKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIV 86
            K      +      D  I     +  I T     F L    +   T  IR+Y D I 
Sbjct: 278 CKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMIN 335


>d1s5da_ d.166.1.1 (A:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
          Length = 235

 Score = 27.3 bits (60), Expect = 1.3
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 59  PYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSN 118
            YV+  +            +  +S    ++ +I     + ++         + +++ VS 
Sbjct: 58  GYVSTSISLRSAHLVGQTILSGHST--YYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSA 115

Query: 119 PGLIALHYLRGWFII 133
            G I    + GW+ +
Sbjct: 116 LGGIPYSQIYGWYRV 130


>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 401

 Score = 26.5 bits (57), Expect = 2.3
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 64  FLLNEPDFTNRTRNIRRYSDPIV 86
             +    +   T  +RRY D +V
Sbjct: 326 HGMGLDLYAQATSPMRRYLDLVV 348


>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 416

 Score = 26.1 bits (56), Expect = 3.7
 Identities = 10/46 (21%), Positives = 16/46 (34%)

Query: 41  AVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRRYSDPIV 86
           +    +        A   P    + L    +T+ T  IRRY D + 
Sbjct: 315 STRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVA 360


>g1tii.1 d.166.1.1 (A:,C:) Heat-labile toxin, A-chain {Escherichia
           coli, type IIB [TaxId: 562]}
          Length = 223

 Score = 25.6 bits (56), Expect = 3.9
 Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 2/72 (2%)

Query: 59  PYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSN 118
            YV+               +  Y++   ++ ++     + D+           ++   + 
Sbjct: 56  GYVSTTTTLRQAHLLGQNMLGGYNE--YYIYVVAAAPNLFDVNGVLGRYSPYPSENEYAA 113

Query: 119 PGLIALHYLRGW 130
            G I L  + GW
Sbjct: 114 LGGIPLSQIIGW 125


>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 143

 Score = 25.1 bits (54), Expect = 4.1
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 59 PYVAAFLLNEPDFTNRTRNIRRYSDPIVFVDLIVDVTF 96
          PYV  FLL +      T+  R+  +P+        V +
Sbjct: 57 PYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94


>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum
           [TaxId: 1515]}
          Length = 340

 Score = 24.6 bits (52), Expect = 8.9
 Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 1/107 (0%)

Query: 21  YKLQTPRIHKWTILHYSPFKAVWDWLILILVVYTAIFTPYVAAFLLNEPDFTNRTRNIRR 80
              +       T+      +  +  +   L         ++A  LLN+    + TR  + 
Sbjct: 93  PGYRFQDFKTSTLFEDPNQQKRFVDIWRFLAKRYINEREHIAFELLNQVVEPDSTRWNKL 152

Query: 81  YSDPIVFVDLIVDVTFIVDIAINFRTTYVNANDEVVSNPGLI-ALHY 126
             + I  +  I    ++     N+ +     N   + +  ++   H+
Sbjct: 153 MLECIKAIREIDSTMWLYIGGNNYNSPDELKNLADIDDDYIVYNFHF 199


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.442 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 763,575
Number of extensions: 34818
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 8
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.3 bits)