BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1552
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 116/178 (65%), Gaps = 50/178 (28%)
Query: 62 LLPPIRHQDMHKKCMVIDLDETLVHSSFK------------------------------- 90
LLP + QD K C+VIDLDETLVHSSFK
Sbjct: 3 LLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEF 62
Query: 91 -------------------YADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRD 131
YADPVADLLD+WG FRARLFRESCVFH GNYVKDL++LGRD
Sbjct: 63 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRD 122
Query: 132 LHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRN 189
L +V+I+DNSPASY+FHPDNAVPVASWFD+M+DTEL+DL+PFFE+LS++D VYS LR
Sbjct: 123 LRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 180
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 190 bits (482), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 116/178 (65%), Gaps = 50/178 (28%)
Query: 62 LLPPIRHQDMHKKCMVIDLDETLVHSSFK------------------------------- 90
LLP + QD K C+VI+LDETLVHSSFK
Sbjct: 4 LLPEAKAQDSDKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEF 63
Query: 91 -------------------YADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRD 131
YADPVADLLD+WG FRARLFRESCVFH GNYVKDL++LGRD
Sbjct: 64 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRD 123
Query: 132 LHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRN 189
L +V+I+DNSPASY+FHPDNAVPVASWFD+M+DTEL+DL+PFFE+LS++D VYS LR
Sbjct: 124 LRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 181
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 190 bits (482), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 99/178 (55%), Positives = 115/178 (64%), Gaps = 50/178 (28%)
Query: 62 LLPPIRHQDMHKKCMVIDLDETLVHSSFK------------------------------- 90
LLP + QD K C+VI LDETLVHSSFK
Sbjct: 4 LLPEAKAQDSDKICVVIXLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEF 63
Query: 91 -------------------YADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRD 131
YADPVADLLD+WG FRARLFRESCVFH GNYVKDL++LGRD
Sbjct: 64 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRD 123
Query: 132 LHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRN 189
L +V+I+DNSPASY+FHPDNAVPVASWFD+M+DTEL+DL+PFFE+LS++D VYS LR
Sbjct: 124 LRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQ 181
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 189 bits (481), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 102/189 (53%), Positives = 118/189 (62%), Gaps = 58/189 (30%)
Query: 51 GQYSPPHSPVRLLPPIRHQDMHKKCMVIDLDETLVHSSFK-------------------- 90
GQY LLP + QD K C+VIDL ETLVHSSFK
Sbjct: 4 GQY--------LLPEAKAQDSDKICVVIDLAETLVHSSFKPVNNADFIIPVEIDGVVHQV 55
Query: 91 ------------------------------YADPVADLLDRWGVFRARLFRESCVFHHGN 120
YADPVADLLD+WG FRARLFRESCVFH GN
Sbjct: 56 YVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGN 115
Query: 121 YVKDLNKLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKM 180
YVKDL++LGRDL +V+I+DNSPASY+FHPDNAVPVASWFD+M+DTEL+DL+PFFE+LS++
Sbjct: 116 YVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRV 175
Query: 181 DSVYSFLRN 189
D VYS LR
Sbjct: 176 DDVYSVLRQ 184
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 189 bits (481), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 102/189 (53%), Positives = 118/189 (62%), Gaps = 58/189 (30%)
Query: 51 GQYSPPHSPVRLLPPIRHQDMHKKCMVIDLDETLVHSSFK-------------------- 90
GQY LLP + QD K C+VIDLDETLVHSSFK
Sbjct: 4 GQY--------LLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQV 55
Query: 91 ------------------------------YADPVADLLDRWGVFRARLFRESCVFHHGN 120
YADPVADLLD+WG FRARLFRESCVFH GN
Sbjct: 56 YVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGN 115
Query: 121 YVKDLNKLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKM 180
YVKDL++LGRDL +V+I+ NSPASY+FHPDNAVPVASWFD+M+DTEL+DL+PFFE+LS++
Sbjct: 116 YVKDLSRLGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRV 175
Query: 181 DSVYSFLRN 189
D VYS LR
Sbjct: 176 DDVYSVLRQ 184
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 187 bits (474), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/178 (55%), Positives = 113/178 (63%), Gaps = 50/178 (28%)
Query: 62 LLPPIRHQDMHKKCMVIDLDETLVHSSFK------------------------------- 90
LLP + QD K C+VIDLDETLVHSSFK
Sbjct: 4 LLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEF 63
Query: 91 -------------------YADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRD 131
YADPVAD LD+WG FRARLFRESCVFH GNYVKDL++LGRD
Sbjct: 64 LQRXGELFECVLFTASLAKYADPVADXLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRD 123
Query: 132 LHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRN 189
L +V+I DNSPASY+FHPDNAVPVASWFD+ +DTEL+DL+PFFE+LS++D VYS LR
Sbjct: 124 LRRVLIXDNSPASYVFHPDNAVPVASWFDNXSDTELHDLLPFFEQLSRVDDVYSVLRQ 181
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 187 bits (474), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/189 (53%), Positives = 117/189 (61%), Gaps = 58/189 (30%)
Query: 51 GQYSPPHSPVRLLPPIRHQDMHKKCMVIDLDETLVHSSFK-------------------- 90
GQY LLP + QD K C+VI LDETLVHSSFK
Sbjct: 4 GQY--------LLPEAKAQDSDKICVVIXLDETLVHSSFKPVNNADFIIPVEIDGVVHQV 55
Query: 91 ------------------------------YADPVADLLDRWGVFRARLFRESCVFHHGN 120
YADPVADLLD+WG FRARLFRESCVFH GN
Sbjct: 56 YVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGN 115
Query: 121 YVKDLNKLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKM 180
YVKDL++LGRDL +V+I+ NSPASY+FHPDNAVPVASWFD+M+DTEL+DL+PFFE+LS++
Sbjct: 116 YVKDLSRLGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRV 175
Query: 181 DSVYSFLRN 189
D VYS LR
Sbjct: 176 DDVYSVLRQ 184
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 111/178 (62%), Gaps = 52/178 (29%)
Query: 54 SPPHSPVRLLPPIRHQDMHKKCMVIDLDETLVHSSFK----------------------- 90
SPP LLP + D KKC+VIDLDETLVHSSFK
Sbjct: 11 SPPAK--YLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVL 68
Query: 91 ---------------------------YADPVADLLDRWGVFRARLFRESCVFHHGNYVK 123
YADPVADLLDRWGVFRARLFRESCVFH GNYVK
Sbjct: 69 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 128
Query: 124 DLNKLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMD 181
DL++LGR+L +VIIVDNSPASYIFHP+NAVPV SWFDDMTDTEL DL+PFFE LS+ D
Sbjct: 129 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSRED 186
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 106/182 (58%), Gaps = 50/182 (27%)
Query: 62 LLPPIRHQDMHKKCMVIDLDETLVHSSFK------------------------------- 90
LLP + +D + C+VIDLDETLVHSSFK
Sbjct: 6 LLPEVTEEDQGRICVVIDLDETLVHSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEF 65
Query: 91 -------------------YADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRD 131
YADPV DLLDR GVFRARLFRESCVFH G YVKDL++LGRD
Sbjct: 66 LRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRD 125
Query: 132 LHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRNSN 191
L + +I+DNSPASYIFHP+NAVPV SWFDDM DTEL +L+P FE LS + VY+ L
Sbjct: 126 LRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQLR 185
Query: 192 HP 193
P
Sbjct: 186 AP 187
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 91 YADPVADLLDRWGVFRA-RLFRESCVFHHGNYVKDLNKLGRDLHQVIIVDNSPASYIFHP 149
Y+D +A+ LD F + LF+E CV+ G ++KDL+KL RDL +VII+D P SY P
Sbjct: 87 YSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQP 146
Query: 150 DNAVPVASWFDDMTDTELYDLVPFFERLS 178
+NA+P+ W + D +L L+PF E L+
Sbjct: 147 ENAIPMEPW-NGEADDKLVRLIPFLEYLA 174
>pdb|2GNV|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice, B10 Mutant F40l
pdb|2GNV|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice, B10 Mutant F40l
Length = 165
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 136 IIVDNSPASYIFHPDN-AVPVASWF---DDMTDTELYDLVPFFERLSKMDSVYSFLRNSN 191
++ DN+ + F + A+ + SW D + L L+ FE ++SFLRNS+
Sbjct: 2 LVEDNNAVAVSFSEEQEALVLKSWAILKKDSANIALRFLLKIFEVAPSASQMFSFLRNSD 61
Query: 192 HPYNMQPSL 200
P P L
Sbjct: 62 VPLEKNPKL 70
>pdb|1D8U|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice
pdb|1D8U|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice
Length = 166
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 136 IIVDNSPASYIFHPDN-AVPVASWF---DDMTDTELYDLVPFFERLSKMDSVYSFLRNSN 191
++ DN+ + F + A+ + SW D + L + FE ++SFLRNS+
Sbjct: 3 LVEDNNAVAVSFSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRNSD 62
Query: 192 HPYNMQPSL 200
P P L
Sbjct: 63 VPLEKNPKL 71
>pdb|2GNW|A Chain A, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice, B10 Mutant F40w
pdb|2GNW|B Chain B, Crystal Structure Of Non-Symbiotic Plant Hemoglobin From
Rice, B10 Mutant F40w
Length = 165
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 136 IIVDNSPASYIFHPDN-AVPVASWF---DDMTDTELYDLVPFFERLSKMDSVYSFLRNSN 191
++ DN+ + F + A+ + SW D + L + FE ++SFLRNS+
Sbjct: 2 LVEDNNAVAVSFSEEQEALVLKSWAILKKDSANIALRFWLKIFEVAPSASQMFSFLRNSD 61
Query: 192 HPYNMQPSL 200
P P L
Sbjct: 62 VPLEKNPKL 70
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 143 ASYIFHPDNAVPVASWFDDMTD 164
A YIF P+ AVP W D++ +
Sbjct: 215 ADYIFIPERAVPHGKWQDELKE 236
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 143 ASYIFHPDNAVPVASWFDDMTDTELYDLVPFFER 176
ASY+ HP VPV W +D+ + D+ +++R
Sbjct: 151 ASYVAHPYR-VPVIGWMNDIQNMTAQDVRDWYKR 183
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 143 ASYIFHPDNAVPVASWFDDMTDTELYDLVPFFER 176
ASY+ HP VPV W +D+ + D+ +++R
Sbjct: 151 ASYVAHPYR-VPVIGWMNDIQNMTAQDVRDWYKR 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,016,645
Number of Sequences: 62578
Number of extensions: 223096
Number of successful extensions: 420
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 29
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)