RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1552
(220 letters)
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1; protein-peptide complex, HAD superfamily,
hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A*
3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Length = 181
Score = 186 bits (474), Expect = 2e-60
Identities = 98/177 (55%), Positives = 115/177 (64%), Gaps = 50/177 (28%)
Query: 62 LLPPIRHQDMHKKCMVIDLDETLVHSSFKY------------------------------ 91
LLP + QD K C+VI+LDETLVHSSFK
Sbjct: 4 LLPEAKAQDSDKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEF 63
Query: 92 --------------------ADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRD 131
ADPVADLLD+WG FRARLFRESCVFH GNYVKDL++LGRD
Sbjct: 64 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRD 123
Query: 132 LHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLR 188
L +V+I+DNSPASY+FHPDNAVPVASWFD+M+DTEL+DL+PFFE+LS++D VYS LR
Sbjct: 124 LRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLR 180
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion,
structural genomics, PSI, protein structure initiative;
HET: KEG; 2.10A {Homo sapiens}
Length = 195
Score = 186 bits (475), Expect = 3e-60
Identities = 102/190 (53%), Positives = 112/190 (58%), Gaps = 52/190 (27%)
Query: 52 QYSPPHSPVR--LLPPIRHQDMHKKCMVIDLDETLVHSSFKY------------------ 91
Q P SP LLP + D KKC+VIDLDETLVHSSFK
Sbjct: 5 QVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQ 64
Query: 92 --------------------------------ADPVADLLDRWGVFRARLFRESCVFHHG 119
ADPVADLLDRWGVFRARLFRESCVFH G
Sbjct: 65 VYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRG 124
Query: 120 NYVKDLNKLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSK 179
NYVKDL++LGR+L +VIIVDNSPASYIFHP+NAVPV SWFDDMTDTEL DL+PFFE LS+
Sbjct: 125 NYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSR 184
Query: 180 MDSVYSFLRN 189
D +
Sbjct: 185 EDDEGHHHHH 194
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET:
1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Length = 204
Score = 176 bits (449), Expect = 3e-56
Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 39/176 (22%)
Query: 52 QYSPPHSPVRLLPPIRHQDMHKKCMVIDLDETLVHSSFK--------------------- 90
+ P P L PP +VI L++ LVHS +
Sbjct: 13 YFQEPPFPDLLPPPPPPPYQRPLTLVITLEDFLVHSEWSQKHGWRTAKRPGADYFLGYLS 72
Query: 91 --------------YADPVADLLDRW-GVFRARLFRESCVFHHGNYVKDLNKLGRDLHQV 135
Y+D +A+ LD LF+E CV+ G ++KDL+KL RDL +V
Sbjct: 73 QYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKV 132
Query: 136 IIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDS--VYSFLRN 189
II+D P SY P+NA+P+ W + D +L L+PF E L+ + V L +
Sbjct: 133 IIIDTDPNSYKLQPENAIPMEPWNGEA-DDKLVRLIPFLEYLATQQTKDVRPILNS 187
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Length = 320
Score = 104 bits (261), Expect = 3e-27
Identities = 23/181 (12%), Positives = 54/181 (29%), Gaps = 52/181 (28%)
Query: 63 LPPIRHQDMHKKCMVIDLDETLVH----------------------------------SS 88
+ + KK +V+D+D TL +S
Sbjct: 130 IKELAPPREGKKLLVLDIDYTLFDHRSPAETGTELMRPYLHEFLTSAYEDYDIVIWSATS 189
Query: 89 FKYADPVADLLDRWGVFRARL---------FRESCVFHHGNYVKDLNKL-----GRDLHQ 134
++ + LL ++ VK L + +
Sbjct: 190 MRWIEEKMRLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKPLGVIWALYKQYNSSN 249
Query: 135 VIIVDNSPASYIFHPDNAVPV----ASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRNS 190
I+ D+ +++ +P + + + + + TDTEL L + +++ ++ L +
Sbjct: 250 TIMFDDIRRNFLMNPKSGLKIRPFRQAHLNRGTDTELLKLSDYLRKIAHHCPDFNSLNHR 309
Query: 191 N 191
Sbjct: 310 K 310
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
pombe}
Length = 442
Score = 89.7 bits (221), Expect = 3e-21
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 90 KYADPVADLLDRWG-VFRARLF-RESCVFHHGNYVKDLNKLGRDLHQVIIVDNSPASYIF 147
YA VA ++D G +F+ R+ R+ ++ L D V+++D+ + +
Sbjct: 110 AYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSLRRL--FPCDTSMVVVIDDRGDVWDW 167
Query: 148 HPDNAVPVASW-----FDDMTDTELYDLVPFFERLSKMDSVYSFLRNSNHPYNMQPS 199
+P N + V + D+ L P E+ + + + +
Sbjct: 168 NP-NLIKVVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEEN 223
Score = 32.7 bits (73), Expect = 0.075
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 67 RHQDMHKKCMVIDLDETLVHSSFK 90
R + + +++ LD+T++H++
Sbjct: 20 RLRQEKRLSLIVXLDQTIIHATVD 43
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, ALF4, transition state analog,
cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Length = 372
Score = 78.7 bits (193), Expect = 2e-17
Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 90 KYADPVADLLDRWG-VFRARLF-RESCVFHHGNYVKDLNKLGRDLHQVIIVDNSPASYIF 147
YA VA ++D G +F+ R+ R+ ++ D V+++D+ + +
Sbjct: 102 AYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSLRR--LFPCDTSMVVVIDDRGDVWDW 159
Query: 148 HPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRNSNHPYNMQP 198
+P N + V + + ++ R + + + + +P
Sbjct: 160 NP-NLIKVVPYEFFVGIGDINSNFLSGNREALEEQNKERVTALELQKSERP 209
Score = 41.7 bits (97), Expect = 9e-05
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 67 RHQDMHKKCMVIDLDETLVHSSFK 90
R + + +++DLD+T++H++
Sbjct: 12 RLRQEKRLSLIVDLDQTIIHATVD 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.003
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 27/117 (23%)
Query: 97 DLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRDLHQVIIVDNSPASYIFH--PDNAVP 154
DL + ++ + Y G + IV N+P + H +
Sbjct: 1634 DLYKTSKAAQD-VWNRADNHFKDTY-------GFSILD--IVINNPVNLTIHFGGEKGKR 1683
Query: 155 VASWFDDMTDTELYD----LVPFFERLSKMDSVYSFLRNSNHP-------YNMQPSL 200
+ + M + D F+ +++ + Y+F QP+L
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF----RSEKGLLSATQFTQPAL 1736
Score = 30.4 bits (68), Expect = 0.58
Identities = 38/229 (16%), Positives = 65/229 (28%), Gaps = 97/229 (42%)
Query: 8 ENDTSTSESVGK--------------KARKGIFRSLLCCF-----RGNHSSSNVSKASGG 48
+ T+ +E VGK + L F GN ++
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN----DI------ 101
Query: 49 SEGQYSPPHSPVRLLPPIRHQDMHKKCMVIDLDETLVHSSFKYADPVAD----------L 98
H+ L + K +I ++ A +A L
Sbjct: 102 --------HALAAKLLQENDTTLVKTKELI--------KNYITARIMAKRPFDKKSNSAL 145
Query: 99 LDRWGVFRARLFRESCVFHHG------NYVKDLNKLGRDLHQVIIVDNSPASYIFHPDNA 152
G A+L +F G +Y ++L RDL+Q +H
Sbjct: 146 FRAVGEGNAQLV---AIF--GGQGNTDDYFEEL----RDLYQ-----------TYHV--- 182
Query: 153 VPVASWFDDMTDTELYDLV-------PFFERLSKMDSVYSFLRN-SNHP 193
V +T L +L+ F + ++ + +L N SN P
Sbjct: 183 -LVGDLIKFSAET-LSELIRTTLDAEKVFTQ--GLN-ILEWLENPSNTP 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.091
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 33/136 (24%)
Query: 68 HQDMHKKCMVIDLDETLVHSSFKYADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLN- 126
H H +D + ++Y D ++ D +V + +
Sbjct: 2 HHHHH-----MDFETGEHQ--YQYKDILSVFED-------------------AFVDNFDC 35
Query: 127 KLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTD--TELYDLVPFFERLSKMDSVY 184
K +D+ + I+ I D F + E+ F E + +++ Y
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRIN--Y 91
Query: 185 SFLRNSNHPYNMQPSL 200
FL + QPS+
Sbjct: 92 KFLMSPIKTEQRQPSM 107
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU
sensitivity of transcription elongation II; 1.70A
{Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Length = 282
Score = 30.9 bits (69), Expect = 0.26
Identities = 21/117 (17%), Positives = 37/117 (31%)
Query: 54 SPPHSPVRLLPPIRHQDMHKKCMVIDLDETLVHSSFKYADPVADLLDRWGVFRARLFRES 113
S P+ Q+ + K D+D L SS + D + + R+ +L E
Sbjct: 38 SKVTFPIDQDISATPQNPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPED 97
Query: 114 CVFHHGNYVKDLNKLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDL 170
+ +Y K+ R L V+ + + + D L L
Sbjct: 98 AHVLNNSYYKEYGLAIRGLVMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRL 154
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 29.9 bits (66), Expect = 0.47
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 5/108 (4%)
Query: 71 MHKKCMVIDLDETLVHSSFKYADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGR 130
M + ++ D+D TL D + L+ R + ++ K + +LGR
Sbjct: 2 MKRVLLLFDVDGTLTPPRLCQTDEMRALIKRARGAGFCVGTVGG----SDFAKQVEQLGR 57
Query: 131 DLH-QVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERL 177
D+ Q V + + S + + + + V RL
Sbjct: 58 DVLTQFDYVFAENGLLAYRNGLEIHRQSLLNALGNDRIVKFVKKTLRL 105
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex,
protein glycosyl carbohydrate-deficient glycoprotein
syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP:
c.108.1.10 PDB: 2fuc_A*
Length = 262
Score = 28.8 bits (63), Expect = 1.1
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%)
Query: 63 LPPIRHQDMHKKCMVIDLDETLVHSSFKYADPVADLLDRWGVFRARLFRESCVFHH---G 119
+ + + + D+D TL + K VA L + R
Sbjct: 3 VTAQAARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKL--------RSRVQIGVVGGS 54
Query: 120 NYVKDLNKLGRDLHQVIIVD---NSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFER 176
+Y K +LG + D + + + + + + + L DL+ F
Sbjct: 55 DYCKIAEQLGDGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLS 114
Query: 177 L 177
Sbjct: 115 Y 115
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 27.9 bits (63), Expect = 2.1
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 162 MTDTELYDLVPFFERLSKMDSVYS 185
TDTEL + + S
Sbjct: 187 TTDTELRGHITHTATKEMYEQRIS 210
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST
genomics, joint center for structural genomics, JCSG;
1.81A {Xanthomonas campestris PV}
Length = 251
Score = 27.3 bits (60), Expect = 4.4
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 62 LLPPIRHQDMHKKCMVIDLDETLVHSS--FKYA-DPVADLLDRWGVFRARLFRE 112
+ P + + + D D+TL S ++ A +L + ++
Sbjct: 2 MTPIAQRDGQAIQLVGFDGDDTLWKSEDYYRTAEADFEAILSGYLDLGDSRMQQ 55
>3t66_A Nickel ABC transporter (nickel-binding protein); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 2.80A {Bacillus halodurans}
Length = 496
Score = 27.3 bits (61), Expect = 4.8
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 134 QVIIVDNSPASYIFHPDNAVPVAS 157
I + S++ HP V
Sbjct: 442 AAYIDEQKIHSFLIHPSAVVAYDE 465
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to
L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP:
b.43.2.1 c.85.1.1
Length = 591
Score = 27.5 bits (60), Expect = 4.8
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 13/75 (17%)
Query: 95 VADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRDLHQVIIVDNSPASYIFHPDNAVP 154
V ++ WG V G+ D L L + + N + ++ P
Sbjct: 517 VYSVMANWG-------ANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVYRP----- 564
Query: 155 VASWFDDMTDTELYD 169
++W D E D
Sbjct: 565 -SAWAAHGMDIEGQD 578
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.10A {Streptococcus
pneumoniae} SCOP: c.108.1.6
Length = 207
Score = 26.8 bits (60), Expect = 4.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 71 MHKKCMVIDLDETLVHS 87
M K + DLD TL+ S
Sbjct: 2 MQKTAFIWDLDGTLLDS 18
>3rqt_A Putative uncharacterized protein; ligand binding component,
ABC-type import system, nickel, SI DI-peptides,
structural genomics; HET: MSE HIS EPE; 1.50A
{Staphylococcus aureus}
Length = 486
Score = 27.2 bits (61), Expect = 5.1
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 134 QVIIVDNSPASYIFHPDNAVPVAS 157
+ + P SYI + D V S
Sbjct: 440 IKLSSRDVPNSYIAYNDQIVAANS 463
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 26.9 bits (60), Expect = 5.5
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 10/65 (15%)
Query: 122 VKDLNKLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMD 181
+ L G H VI D ++ D+ E + +D
Sbjct: 46 ARRLKHEG---HYVIASDWKKNEHMTEDMFC--DEFHLVDLRVME-----NCLKVTEGVD 95
Query: 182 SVYSF 186
V++
Sbjct: 96 HVFNL 100
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 26.7 bits (58), Expect = 5.7
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 21/134 (15%)
Query: 73 KKCMVIDLDETLVHS-SFKYADPVADLLDRWGVF----RARLFRESCVFHHGNYVKDLNK 127
+ + +D+D+TL+ A P+ + L G ++ E +
Sbjct: 2 IRLIFLDIDKTLIPGYEPDPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRK--------- 52
Query: 128 LGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDL----VPFFERLSKMDSV 183
++ I +N S IF P P ++ + + +L E L K++++
Sbjct: 53 -ELEVETPFISEN--GSAIFIPKGYFPFDVKGKEVGNYIVIELGIRVEKIREELKKLENI 109
Query: 184 YSFLRNSNHPYNMQ 197
Y N
Sbjct: 110 YGLKYYGNSTKEEI 123
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 26.7 bits (60), Expect = 6.0
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 67 RHQDMHKKCM----VIDLDETLVHS 87
H++++ + M DLD TL+
Sbjct: 11 HHENLYFQGMYQVVASDLDGTLLSP 35
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 26.4 bits (59), Expect = 6.6
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 162 MTDTELYDLVPFFERLSKMDSVY 184
TEL + D+
Sbjct: 191 AVKTELLSHTTSQQIKDGYDAWR 213
>2p11_A Hypothetical protein; putative haloacid dehalogenase-like
hydrolase, structural GE joint center for structural
genomics, JCSG; 2.20A {Burkholderia xenovorans}
Length = 231
Score = 26.7 bits (58), Expect = 6.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 72 HKKCMVIDLDETLVHSSFKYADPVADLLDRWGVFRARLFRE 112
H + D D TL+ + AD A ++ +G + + E
Sbjct: 10 HDIVFLFDCDNTLLDNDHVLADLRAHMMREFGAQNSARYWE 50
>2ezv_A Type II restriction enzyme SFII; type IIF restriction endonuclease,
protein/DNA complex, hydrolase/DNA complex; 2.40A
{Synthetic} PDB: 2f03_A*
Length = 269
Score = 26.3 bits (57), Expect = 7.2
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 138 VDNSPASYIFHPDNAVPVASWFDDMTDTE 166
+D ++ P +P D TE
Sbjct: 78 IDYKRVRWLPSPHGLLPQVLLVDAKASTE 106
>2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function;
NMR {Thermoplasma acidophilum}
Length = 146
Score = 25.9 bits (56), Expect = 7.2
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 147 FHPDNAVPVASWFDDMTDTELYDLVPFFERLSK 179
HP+ V FD+ + + +L+ + L K
Sbjct: 85 LHPEERKKVREKFDENSRMQYSELMTKYHDLKK 117
>4f2n_A Superoxide dismutase; ssgcid, NIH, niaid, SBRI, emerald
biostructures, structural national institute of allergy
and infectious diseases; 1.85A {Leishmania major}
Length = 230
Score = 26.5 bits (59), Expect = 7.3
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 117 HHGNYVKDLNKLGRDL 132
HH YV LN LG+
Sbjct: 62 HHSAYVDKLNTLGKGY 77
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 26.4 bits (59), Expect = 8.2
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 120 NYVKDLNKLGRDLHQVIIVDN 140
N VK LN G +++VDN
Sbjct: 14 NIVKALNDKGI--TDILVVDN 32
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine
N-methyltransferase setmar, SET domain and mariner
transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A
3k9j_A
Length = 226
Score = 26.3 bits (56), Expect = 8.9
Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 4/103 (3%)
Query: 102 WGVFRARLFRESCVFHHGNYVKDLNKLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFD- 160
G+ Y ++++++ + L ++ + + I DNA P +
Sbjct: 82 AGLIHYSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTL 141
Query: 161 ---DMTDTELYDLVPFFERLSKMDSVYSFLRNSNHPYNMQPSL 200
+ E+ P+ L + N+ +
Sbjct: 142 QKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKRFHNQ 184
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport,
transport protein; 1.55A {Bacillus subtilis} SCOP:
c.94.1.1
Length = 520
Score = 26.1 bits (58), Expect = 9.8
Identities = 4/22 (18%), Positives = 14/22 (63%)
Query: 134 QVIIVDNSPASYIFHPDNAVPV 155
I ++ P +++++P+N + +
Sbjct: 474 YQKIAEDQPYTFLYYPNNHMAM 495
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.422
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,425,490
Number of extensions: 194860
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 47
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)