RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1552
(220 letters)
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II
polypeptide A small phosphatase 1, NRAMP1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 181
Score = 141 bits (357), Expect = 3e-43
Identities = 100/177 (56%), Positives = 116/177 (65%), Gaps = 50/177 (28%)
Query: 62 LLPPIRHQDMHKKCMVIDLDETLVHSSFK------------------------------- 90
LLP + QD K C+VIDLDETLVHSSFK
Sbjct: 4 LLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEF 63
Query: 91 -------------------YADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRD 131
YADPVADLLD+WG FRARLFRESCVFH GNYVKDL++LGRD
Sbjct: 64 LQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRD 123
Query: 132 LHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLR 188
L +V+I+DNSPASY+FHPDNAVPVASWFD+M+DTEL+DL+PFFE+LS++D VYS LR
Sbjct: 124 LRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLR 180
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 29.6 bits (65), Expect = 0.24
Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 9/127 (7%)
Query: 73 KKCMVIDLDETLVHS-SFKYADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRD 131
+ + +D+D+TL+ A P+ + L G +F+ + ++
Sbjct: 2 IRLIFLDIDKTLIPGYEPDPAKPIIEELKDMGFE--------IIFNSSKTRAEQEYYRKE 53
Query: 132 LHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRNSN 191
L + S IF P P ++ + + +L E++ + +
Sbjct: 54 LEVETPFISENGSAIFIPKGYFPFDVKGKEVGNYIVIELGIRVEKIREELKKLENIYGLK 113
Query: 192 HPYNMQP 198
+ N
Sbjct: 114 YYGNSTK 120
>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase,
FCSD, cytochrome subunit {Purple phototrophic bacterium
(Chromatium vinosum) [TaxId: 1049]}
Length = 80
Score = 27.9 bits (61), Expect = 0.32
Identities = 6/75 (8%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 106 RARLFRESCVFHHGNYVKDLNKLGRDLHQVIIVDNSPA--SYIFHPDNAVPVASWFDDMT 163
A + +C HG + + + Q+ + + + + +
Sbjct: 3 TAEMLTNNCAGCHGTHGNSVGPASPSIAQMDPMVFVEVMEGFKSGEIASTIMGRIAKGYS 62
Query: 164 DTELYDLVPFFERLS 178
+ + +F++ +
Sbjct: 63 TADFEKMAGYFKQQT 77
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 27.9 bits (62), Expect = 0.47
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 165 TELYDLVPFFERLSKMDSVYSFLRNSNHPYNMQPSLGG 202
T+LY+L ER +D +F P++G
Sbjct: 10 TKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGR 47
>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 247
Score = 28.7 bits (62), Expect = 0.56
Identities = 14/128 (10%), Positives = 36/128 (28%), Gaps = 3/128 (2%)
Query: 70 DMHK-KCMVIDLDETLVHSSFKYADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKL 128
+ + + + DLD TL+ ++ + +++ ++E L+K
Sbjct: 2 GLSRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQ--SKYHYKEEAEIICDKVQVKLSKE 59
Query: 129 GRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLR 188
+ I D + + A + + + D V + L
Sbjct: 60 CFHPYSTCITDVRTSHWEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLT 119
Query: 189 NSNHPYNM 196
+
Sbjct: 120 ELRKEVRL 127
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
protein {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 128
Score = 27.2 bits (60), Expect = 0.94
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 165 TELYDLVPFFERLSKMDSVYSFLRNSNHPYNMQPSLGG 202
+LY++ +R +D ++SF++ P N P +
Sbjct: 12 RQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAK 49
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 28.0 bits (61), Expect = 1.0
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 74 KCMVIDLDETLVHSSFKYADPVADLLDRW---GVFRARLFRESCVFHHGNYVKDLNKLGR 130
K + IDLD TL++S + + + L + G+ V G D+ +
Sbjct: 2 KLIAIDLDGTLLNSKHQVSLENENALRQAQRDGIE--------VVVSTGRAHFDVMSIFE 53
Query: 131 DLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLV 171
L V ++ + I P+ + D ++ +
Sbjct: 54 PLGIKTWVISANGAVIHDPEGRLYHHETIDKKRAYDILSWL 94
>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 187
Score = 27.4 bits (59), Expect = 1.1
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 71 MHKKCMVIDLDETLVHSSFKYADPVADLLDRWGV 104
M + DL TL+ + + L +G+
Sbjct: 1 MKYHDYIWDLGGTLLDNYETSTAAFVETLALYGI 34
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 27.6 bits (60), Expect = 1.2
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 71 MHKKCMVIDLDETLVHSSFKYADPVADLLDRW 102
+ K + ID+D TL+ + V + +
Sbjct: 2 LAIKLIAIDMDGTLLLPDHTISPAVKNAIAAA 33
>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase
{Lactobacillus plantarum [TaxId: 1590]}
Length = 207
Score = 27.2 bits (58), Expect = 1.2
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 71 MHKKCMVIDLDETLVHSSFKYADPVADLLDRWGV 104
M + ++ D+D TL +S Y + ++L +G
Sbjct: 1 MTYQALMFDIDGTLTNSQPAYTTVMREVLATYGK 34
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 102
Score = 26.3 bits (58), Expect = 1.3
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 180 MDSVYSFLRNSNHPYNMQPSLGG 202
M S+ + N P P +G
Sbjct: 9 MKSLIENCKKRNMPLQSIPEIGN 31
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 26.9 bits (58), Expect = 1.6
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 74 KCMVIDLDETLVHSSFKYADPVADLLDRW 102
K + ID+D T+ + + + + + R
Sbjct: 3 KAISIDIDGTITYPNRMIHEKALEAIRRA 31
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 149
Score = 26.6 bits (58), Expect = 1.6
Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 18/110 (16%)
Query: 73 KKCMVIDLDETLVHSS------------FKYADPVADLLDRWGVFRARLF-----RESCV 115
K ++ D+D TL + V +L + + ++
Sbjct: 7 PKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTK 66
Query: 116 FHHGNYVKDLNKLGRDLHQVIIVD-NSPASYIFHPDNAVPVASWFDDMTD 164
Y + K D+ V +V D+ V ++ +
Sbjct: 67 EDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAP 116
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1,
LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.9 bits (57), Expect = 1.8
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 155 VASWF--DDMTDTELYDLVPFFERLSKMDSVYSFLRN 189
S D MT E + V+ F+RN
Sbjct: 8 FQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRN 44
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.0 bits (58), Expect = 1.9
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 71 MHKKCMVI-DLDETLVHSSFKYADPVADLLDRW 102
+ + +V DLD TL+ S P A L R
Sbjct: 1 IQQPLLVFSDLDGTLLDSHSYDWQPAAPWLTRL 33
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 26.7 bits (57), Expect = 2.1
Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 1/126 (0%)
Query: 73 KKCMVIDLDETLVHSSFKYADPVADLLDRWGV-FRARLFRESCVFHHGNYVKDLNKLGRD 131
K + DLD TL+ S + + ++ + + RE + + R+
Sbjct: 1 KTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRN 60
Query: 132 LHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRNSN 191
L ++ S V + + + + + F ++
Sbjct: 61 LDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGV 120
Query: 192 HPYNMQ 197
Y +
Sbjct: 121 ESYFTE 126
>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 210
Score = 26.7 bits (57), Expect = 2.3
Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 8/101 (7%)
Query: 70 DMHKKCMVIDLDETLVHSS--------FKYADPVADLLDRWGVFRARLFRESCVFHHGNY 121
+ KK ++ D D TLV++ + V + + +
Sbjct: 1 EKKKKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLK 60
Query: 122 VKDLNKLGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDM 162
+ K+ + + ++ + + + + VA
Sbjct: 61 DLPIEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGF 101
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 26.3 bits (56), Expect = 3.1
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 134 QVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPF 173
+ D + I + V ++ + +PF
Sbjct: 453 LTRLHDEAVYLPISYISMMVVSKPELGNIPYAPIATEIPF 492
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
{Clostridium perfringens [TaxId: 1502]}
Length = 426
Score = 26.3 bits (58), Expect = 3.6
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 123 KDLNKLGRDL--HQVIIVDNSPASYIFHPD-NAVPVASWFDDMTDTELYDLVPFFERLSK 179
+L + L QV + P + F+ + N W +D+T V +ER +
Sbjct: 80 PELKAIFTGLINRQVKCIFIDPYANAFNKEPNG---QKWDNDITK--DSPWV--WERKYE 132
Query: 180 MDSVYSFLRNSNHPYN 195
+DS+ +R + +
Sbjct: 133 IDSLCYPVRLIHKYWK 148
>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas
sp., strain YL [TaxId: 306]}
Length = 220
Score = 26.0 bits (55), Expect = 3.7
Identities = 7/63 (11%), Positives = 16/63 (25%)
Query: 72 HKKCMVIDLDETLVHSSFKYADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRD 131
+ K + DL TL R A ++ + + + +
Sbjct: 1 YIKGIAFDLYGTLFDVHSVVGRCDEAFPGRGREISALWRQKQLEYTWLRSLMNRYVNFQQ 60
Query: 132 LHQ 134
+
Sbjct: 61 ATE 63
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 25.7 bits (55), Expect = 3.9
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 74 KCMVIDLDETLVHSSFKYADPVADLLDRW 102
+ ID+D L + + +
Sbjct: 4 RLAAIDVDGNLTDRDRLISTKAIESIRSA 32
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 25.7 bits (55), Expect = 4.4
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 74 KCMVIDLDETLVHSSFKYADPVADLLDR 101
+ V DLD TL++ + + ++ +++
Sbjct: 3 RVFVFDLDGTLLNDNLEISEKDRRNIEK 30
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 98
Score = 24.4 bits (53), Expect = 5.3
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 95 VADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRDLHQVIIVDNSP 142
V L R G R R+F G+ + + DL ++ +
Sbjct: 16 VLSLCARHGAVRVRVF--------GSVARGEAREDSDLDLLVAFEEGR 55
>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph
{Haemophilus somnus [TaxId: 731]}
Length = 224
Score = 25.6 bits (54), Expect = 5.4
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 71 MHK-KCMVIDLDETLVHSSFKYADPVADLLDRWGV 104
M + K + DLD TLV+S A + L +
Sbjct: 1 MTQFKLIGFDLDGTLVNSLPDLALSINSALKDVNL 35
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 25.4 bits (54), Expect = 5.8
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 71 MHKKCMVIDLDETLVHSSFKYADPVADLL 99
M + ++ DLD T V + + + + L
Sbjct: 1 MRQLLLISDLDNTWVGDQ-QALEHLQEYL 28
>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis
[TaxId: 1358]}
Length = 221
Score = 25.2 bits (53), Expect = 5.8
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 74 KCMVIDLDETLVHSSFKYADPVADLLDRWGV 104
K ++ DLD + ++ + L + G+
Sbjct: 3 KAVLFDLDGVITDTAEYHFRAWKALAEEIGI 33
>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 210
Score = 25.2 bits (53), Expect = 5.9
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 74 KCMVIDLDETLVHSSFKYADPVADLLDRWGV 104
+ DLD TLV SS + GV
Sbjct: 5 TAIFFDLDGTLVDSSIGIHNAFTYTFKELGV 35
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 443
Score = 25.5 bits (56), Expect = 6.0
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 134 QVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRNSNHP 193
Q ++ P + F+ + W D+TD + ER ++DS+ +R + H
Sbjct: 101 QFKCINIDPYANAFNMN--SEGGEWMSDLTDMKPE----LHERKWEIDSLCYPIRLAYHY 154
Query: 194 YN 195
+
Sbjct: 155 WK 156
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 122
Score = 24.8 bits (54), Expect = 6.0
Identities = 4/25 (16%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 77 VIDLDETLVHSSF-KYADPVADLLD 100
+D D T+V + + + + ++
Sbjct: 4 AVDFDGTIVEHRYPRIGEEIPFAVE 28
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 25.3 bits (54), Expect = 6.2
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 12/101 (11%)
Query: 74 KCMVIDLDETLVHSSFKYADP-VADLLDRW---GVFRARLFRESCVFHHGNYVKDLNKLG 129
K +V D+D T ++ + Y P G+ V GN L
Sbjct: 3 KVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGI--------KFVVASGNQYYQLISFF 54
Query: 130 RDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDL 170
+L I + ++ + + + +L
Sbjct: 55 PELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGEL 95
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli
[TaxId: 562]}
Length = 289
Score = 25.1 bits (54), Expect = 7.0
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 156 ASWFDDMTD-TELYDLVPFFERLSKMDSVYS 185
S D M ELY+ + +++ K+D++++
Sbjct: 259 KSVIDTMQTRNELYESINYYQYEEKLDNLFA 289
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 245
Score = 24.7 bits (52), Expect = 9.1
Identities = 8/124 (6%), Positives = 25/124 (20%)
Query: 74 KCMVIDLDETLVHSSFKYADPVADLLDRWGVFRARLFRESCVFHHGNYVKDLNKLGRDLH 133
K +V D TL R ++ + + +
Sbjct: 3 KAVVFDAYGTLFDVQSVADATERAYPGRGEYITQVWRQKQLEYSWLRALMGRYADFWSVT 62
Query: 134 QVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFLRNSNHP 193
+ + + ++ + + + E ++ S
Sbjct: 63 REALAYTLGTLGLEPDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDMLQ 122
Query: 194 YNMQ 197
+
Sbjct: 123 ALVA 126
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex
pyrophilus [TaxId: 2714]}
Length = 89
Score = 23.8 bits (51), Expect = 9.9
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 117 HHGNYVKDLNKL 128
H+ YV N++
Sbjct: 30 HYKGYVAKYNEI 41
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 24.8 bits (52), Expect = 9.9
Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 6/129 (4%)
Query: 74 KCMVIDLDETLVHSSFKYADPVADLLDRWGVFR------ARLFRESCVFHHGNYVKDLNK 127
+ + D TL+ + + + + G + + + NY +
Sbjct: 3 RAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYR 62
Query: 128 LGRDLHQVIIVDNSPASYIFHPDNAVPVASWFDDMTDTELYDLVPFFERLSKMDSVYSFL 187
RD+ + ++ + +P+N + ++V + L V
Sbjct: 63 PIRDIEEEVMRKLAEKYGFKYPENFWEIHLRMHQRYGELYPEVVEVLKSLKGKYHVGMIT 122
Query: 188 RNSNHPYNM 196
+
Sbjct: 123 DSDTEYLMA 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.422
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 845,392
Number of extensions: 38037
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 38
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)