Query psy15524
Match_columns 930
No_of_seqs 657 out of 5706
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 23:32:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0348|consensus 100.0 7E-102 2E-106 808.7 39.2 519 356-883 101-665 (708)
2 KOG0345|consensus 100.0 1.4E-84 3.1E-89 671.0 39.9 448 389-882 3-454 (567)
3 KOG0342|consensus 100.0 2.2E-83 4.7E-88 667.8 37.7 450 386-885 78-528 (543)
4 KOG0343|consensus 100.0 6.7E-82 1.5E-86 660.7 37.6 448 389-885 68-516 (758)
5 KOG0330|consensus 100.0 2.9E-71 6.2E-76 559.7 30.5 358 389-777 60-417 (476)
6 KOG0331|consensus 100.0 3.3E-67 7.1E-72 569.7 37.3 367 391-777 92-458 (519)
7 KOG0338|consensus 100.0 7.5E-66 1.6E-70 535.5 30.2 361 390-778 181-544 (691)
8 KOG0340|consensus 100.0 1.8E-63 3.9E-68 497.2 29.3 372 388-785 5-380 (442)
9 COG0513 SrmB Superfamily II DN 100.0 1.3E-62 2.9E-67 561.9 40.5 362 390-778 29-392 (513)
10 KOG0333|consensus 100.0 2.4E-62 5.2E-67 511.6 33.6 384 363-776 225-633 (673)
11 KOG0328|consensus 100.0 5.1E-61 1.1E-65 464.3 27.8 370 385-786 22-393 (400)
12 KOG0336|consensus 100.0 4E-60 8.6E-65 479.5 26.4 363 390-776 219-581 (629)
13 KOG0346|consensus 100.0 1.1E-58 2.4E-63 474.5 31.4 364 390-775 19-418 (569)
14 PRK04837 ATP-dependent RNA hel 100.0 1E-57 2.2E-62 517.7 42.1 366 388-777 6-372 (423)
15 PTZ00110 helicase; Provisional 100.0 3.7E-57 8.1E-62 522.5 42.0 364 390-777 130-494 (545)
16 KOG0326|consensus 100.0 3.8E-59 8.3E-64 458.6 19.9 356 389-777 84-439 (459)
17 PRK11776 ATP-dependent RNA hel 100.0 9.6E-57 2.1E-61 515.5 41.9 356 390-777 4-359 (460)
18 PRK10590 ATP-dependent RNA hel 100.0 1.8E-56 3.8E-61 510.4 41.4 361 391-777 2-362 (456)
19 PLN00206 DEAD-box ATP-dependen 100.0 1.6E-56 3.6E-61 516.2 41.3 363 390-776 121-484 (518)
20 PRK11634 ATP-dependent RNA hel 100.0 1.9E-56 4.1E-61 520.0 41.6 364 390-784 6-370 (629)
21 KOG0347|consensus 100.0 1.5E-58 3.3E-63 485.3 20.2 365 390-777 181-580 (731)
22 PRK04537 ATP-dependent RNA hel 100.0 3.5E-56 7.6E-61 515.7 41.6 365 390-777 9-374 (572)
23 KOG0335|consensus 100.0 4.9E-57 1.1E-61 481.1 30.9 369 391-775 75-452 (482)
24 KOG0341|consensus 100.0 2.8E-58 6E-63 463.0 18.0 353 390-768 170-529 (610)
25 PRK11192 ATP-dependent RNA hel 100.0 5E-54 1.1E-58 490.2 42.8 359 391-777 2-362 (434)
26 KOG0339|consensus 100.0 4.7E-54 1E-58 446.6 31.1 361 390-776 223-584 (731)
27 PRK01297 ATP-dependent RNA hel 100.0 7.2E-53 1.6E-57 484.4 42.1 365 389-777 86-452 (475)
28 KOG0350|consensus 100.0 3.8E-53 8.1E-58 440.7 29.7 354 404-776 150-549 (620)
29 PTZ00424 helicase 45; Provisio 100.0 1.7E-51 3.7E-56 466.5 41.9 356 390-777 28-384 (401)
30 KOG0334|consensus 100.0 1.9E-52 4.1E-57 475.7 28.2 362 390-776 365-729 (997)
31 KOG0337|consensus 100.0 2.7E-52 5.9E-57 425.6 25.7 358 390-777 21-378 (529)
32 KOG0332|consensus 100.0 1.2E-51 2.7E-56 414.7 24.1 363 382-778 82-455 (477)
33 KOG0327|consensus 100.0 1.4E-50 3E-55 412.3 24.8 364 390-787 26-391 (397)
34 TIGR03817 DECH_helic helicase/ 100.0 1.5E-48 3.2E-53 463.0 40.2 346 397-775 20-396 (742)
35 KOG4284|consensus 100.0 7.8E-49 1.7E-53 418.1 23.5 349 389-769 24-381 (980)
36 PLN03137 ATP-dependent DNA hel 100.0 4.6E-47 9.9E-52 443.3 40.1 346 390-777 435-797 (1195)
37 TIGR00614 recQ_fam ATP-depende 100.0 1.1E-46 2.5E-51 430.9 35.7 332 406-778 3-344 (470)
38 KOG0344|consensus 100.0 4.5E-47 9.6E-52 406.3 25.8 359 397-777 142-505 (593)
39 PRK02362 ski2-like helicase; P 100.0 3.8E-45 8.3E-50 440.1 41.2 381 391-804 2-439 (737)
40 PRK11057 ATP-dependent DNA hel 100.0 1.5E-44 3.2E-49 423.8 37.5 340 397-779 8-355 (607)
41 PRK13767 ATP-dependent helicas 100.0 9.4E-44 2E-48 430.9 42.1 359 397-767 17-398 (876)
42 TIGR01389 recQ ATP-dependent D 100.0 1.4E-43 3.1E-48 417.6 35.6 334 404-780 3-344 (591)
43 PRK00254 ski2-like helicase; P 100.0 1.1E-41 2.3E-46 409.2 40.1 351 391-775 2-397 (720)
44 PRK01172 ski2-like helicase; P 100.0 5.4E-41 1.2E-45 401.8 39.0 356 391-784 2-397 (674)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.7E-41 5.9E-46 390.7 33.4 324 406-766 8-390 (844)
46 TIGR00580 mfd transcription-re 100.0 1.6E-40 3.4E-45 397.1 38.9 324 398-767 436-770 (926)
47 KOG0329|consensus 100.0 4.3E-42 9.3E-47 328.0 14.3 325 389-778 41-367 (387)
48 COG1201 Lhr Lhr-like helicases 100.0 1.1E-39 2.4E-44 375.1 37.1 350 397-766 7-361 (814)
49 COG0514 RecQ Superfamily II DN 100.0 2E-40 4.2E-45 368.0 28.6 337 402-780 5-350 (590)
50 PRK10917 ATP-dependent DNA hel 100.0 2.6E-39 5.6E-44 383.3 37.6 332 401-777 249-603 (681)
51 PRK10689 transcription-repair 100.0 2.6E-39 5.7E-44 394.9 38.4 321 400-766 587-918 (1147)
52 KOG0952|consensus 100.0 1.7E-39 3.7E-44 365.7 31.4 387 409-822 105-541 (1230)
53 PRK09751 putative ATP-dependen 100.0 4.4E-39 9.6E-44 393.4 35.5 325 434-767 1-383 (1490)
54 PRK09200 preprotein translocas 100.0 1.5E-38 3.2E-43 368.5 34.3 344 402-769 67-543 (790)
55 TIGR00643 recG ATP-dependent D 100.0 4.7E-38 1E-42 370.5 37.7 321 402-764 224-563 (630)
56 KOG0330|consensus 100.0 2.5E-39 5.3E-44 328.2 17.5 246 1-333 79-324 (476)
57 TIGR03714 secA2 accessory Sec 100.0 1.2E-37 2.5E-42 357.1 31.8 335 415-770 69-540 (762)
58 PHA02653 RNA helicase NPH-II; 100.0 5.8E-37 1.3E-41 354.3 36.4 316 417-769 167-516 (675)
59 KOG0348|consensus 100.0 9.2E-39 2E-43 335.5 17.8 280 1-334 155-450 (708)
60 KOG0331|consensus 100.0 1.4E-38 3.1E-43 346.3 20.0 257 1-333 109-365 (519)
61 PRK12898 secA preprotein trans 100.0 2.9E-37 6.3E-42 350.1 31.3 334 402-771 92-590 (656)
62 TIGR00963 secA preprotein tran 100.0 3.2E-36 6.9E-41 342.8 36.8 344 402-770 45-520 (745)
63 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.3E-36 2.8E-41 360.0 33.2 310 421-770 9-339 (819)
64 PRK09401 reverse gyrase; Revie 100.0 1E-36 2.2E-41 373.0 33.3 306 404-753 71-430 (1176)
65 COG1204 Superfamily II helicas 100.0 2.4E-36 5.2E-41 353.8 34.2 351 398-779 16-421 (766)
66 KOG0349|consensus 100.0 2.6E-37 5.6E-42 315.8 21.6 302 467-778 287-627 (725)
67 PRK14701 reverse gyrase; Provi 100.0 3.7E-36 8.1E-41 375.0 32.9 336 401-777 67-466 (1638)
68 PRK11664 ATP-dependent RNA hel 100.0 5.5E-36 1.2E-40 355.8 29.7 310 421-769 12-341 (812)
69 COG1202 Superfamily II helicas 100.0 1.2E-35 2.5E-40 314.5 24.3 346 390-766 194-552 (830)
70 KOG0352|consensus 100.0 5.4E-36 1.2E-40 306.1 19.9 344 401-778 6-373 (641)
71 TIGR01054 rgy reverse gyrase. 100.0 1.5E-34 3.2E-39 354.8 36.3 293 404-739 69-409 (1171)
72 TIGR01587 cas3_core CRISPR-ass 100.0 5.6E-35 1.2E-39 325.7 28.6 301 431-765 1-334 (358)
73 KOG0338|consensus 100.0 3E-36 6.6E-41 314.7 16.7 249 1-333 199-450 (691)
74 KOG0345|consensus 100.0 2.2E-35 4.7E-40 306.4 22.7 253 1-332 24-278 (567)
75 KOG0342|consensus 100.0 1.6E-35 3.4E-40 310.0 21.0 252 1-331 100-352 (543)
76 KOG0951|consensus 100.0 1.9E-33 4.2E-38 320.3 39.4 341 413-802 1142-1529(1674)
77 KOG0343|consensus 100.0 9.2E-36 2E-40 313.8 18.1 251 2-334 88-338 (758)
78 COG0513 SrmB Superfamily II DN 100.0 7.4E-35 1.6E-39 333.5 26.7 250 1-333 47-297 (513)
79 PHA02558 uvsW UvsW helicase; P 100.0 1.4E-34 3.1E-39 332.7 28.4 315 412-761 112-446 (501)
80 COG1111 MPH1 ERCC4-like helica 100.0 3.6E-33 7.9E-38 295.0 33.4 338 411-769 12-483 (542)
81 KOG0351|consensus 100.0 3.4E-34 7.4E-39 337.0 27.9 341 400-779 250-604 (941)
82 KOG0346|consensus 100.0 1.8E-34 3.9E-39 296.7 19.7 265 1-343 37-302 (569)
83 KOG0951|consensus 100.0 1.5E-33 3.2E-38 321.2 28.1 390 392-801 290-736 (1674)
84 KOG0333|consensus 100.0 2E-34 4.4E-39 302.5 19.4 276 1-333 263-541 (673)
85 TIGR03158 cas3_cyano CRISPR-as 100.0 1.4E-32 3.1E-37 302.1 30.7 312 418-752 1-357 (357)
86 PTZ00110 helicase; Provisional 100.0 6.2E-33 1.4E-37 321.0 27.0 252 1-332 148-400 (545)
87 PRK04837 ATP-dependent RNA hel 100.0 1.4E-32 3E-37 312.1 27.6 252 1-332 26-278 (423)
88 PRK11776 ATP-dependent RNA hel 100.0 1.3E-32 2.8E-37 315.9 26.6 244 1-332 22-265 (460)
89 PRK13104 secA preprotein trans 100.0 5.3E-32 1.1E-36 312.3 31.2 333 415-769 81-589 (896)
90 PRK11634 ATP-dependent RNA hel 100.0 1.5E-32 3.2E-37 320.2 26.8 246 1-333 24-269 (629)
91 PRK10590 ATP-dependent RNA hel 100.0 1.8E-32 3.9E-37 313.0 26.6 250 1-332 19-268 (456)
92 PRK04537 ATP-dependent RNA hel 100.0 1.9E-32 4.1E-37 317.9 26.3 253 1-332 27-280 (572)
93 COG1205 Distinct helicase fami 100.0 9.5E-32 2.1E-36 319.9 31.8 340 401-765 58-420 (851)
94 KOG0335|consensus 100.0 8.1E-33 1.8E-37 295.8 17.5 261 2-333 93-361 (482)
95 PLN00206 DEAD-box ATP-dependen 100.0 7E-32 1.5E-36 311.7 26.6 250 1-331 139-389 (518)
96 KOG0340|consensus 100.0 8.3E-33 1.8E-37 277.6 16.2 251 1-333 25-278 (442)
97 KOG0326|consensus 100.0 1.8E-33 3.9E-38 277.7 9.7 245 1-334 103-347 (459)
98 PRK13766 Hef nuclease; Provisi 100.0 2.2E-30 4.8E-35 316.7 37.2 335 411-767 12-479 (773)
99 KOG0354|consensus 100.0 4.7E-31 1E-35 296.1 28.4 339 411-768 59-530 (746)
100 PRK12899 secA preprotein trans 100.0 2E-30 4.3E-35 298.3 33.3 146 397-555 68-228 (970)
101 KOG0328|consensus 100.0 1.8E-32 3.9E-37 266.2 13.1 244 1-332 45-289 (400)
102 KOG0339|consensus 100.0 9E-32 2E-36 280.8 19.1 249 3-333 243-492 (731)
103 KOG0336|consensus 100.0 3.4E-32 7.3E-37 276.8 14.9 252 1-333 238-489 (629)
104 PRK11192 ATP-dependent RNA hel 100.0 1.2E-30 2.6E-35 297.9 28.0 247 1-331 19-267 (434)
105 KOG0353|consensus 100.0 9.4E-31 2E-35 263.5 22.0 337 393-770 74-470 (695)
106 PRK11131 ATP-dependent RNA hel 100.0 3.7E-30 7.9E-35 309.8 31.3 304 421-769 81-413 (1294)
107 PRK12904 preprotein translocas 100.0 2.3E-29 5E-34 290.7 34.9 342 403-769 71-575 (830)
108 PRK12906 secA preprotein trans 100.0 1E-29 2.2E-34 292.5 31.1 343 402-769 69-555 (796)
109 PRK01297 ATP-dependent RNA hel 100.0 3.2E-30 7E-35 296.7 27.2 252 1-332 105-358 (475)
110 PRK05580 primosome assembly pr 100.0 8.6E-30 1.9E-34 300.6 30.1 327 414-779 144-561 (679)
111 TIGR00603 rad25 DNA repair hel 100.0 4.4E-30 9.5E-35 295.2 25.2 315 413-770 254-610 (732)
112 PRK13107 preprotein translocas 100.0 5.2E-29 1.1E-33 286.5 28.2 333 415-769 81-593 (908)
113 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.5E-28 3.3E-33 297.2 30.7 306 422-769 75-406 (1283)
114 KOG0334|consensus 100.0 4.5E-30 9.7E-35 293.5 16.2 255 1-336 383-640 (997)
115 KOG0952|consensus 100.0 3.5E-29 7.7E-34 282.9 20.9 174 1-179 106-287 (1230)
116 KOG0337|consensus 100.0 7.9E-30 1.7E-34 261.5 14.2 248 2-335 40-287 (529)
117 KOG0341|consensus 100.0 9.1E-31 2E-35 264.6 7.0 251 2-334 189-446 (610)
118 COG1200 RecG RecG-like helicas 100.0 1.9E-27 4E-32 263.2 31.9 326 398-768 247-592 (677)
119 PTZ00424 helicase 45; Provisio 100.0 4.1E-28 9E-33 275.2 26.6 244 1-332 46-290 (401)
120 KOG0347|consensus 100.0 5.1E-30 1.1E-34 270.7 9.4 274 1-332 199-486 (731)
121 PRK09694 helicase Cas3; Provis 100.0 2.7E-27 5.8E-32 280.5 33.1 328 410-756 282-664 (878)
122 KOG0350|consensus 100.0 4.1E-29 8.8E-34 261.5 15.2 279 1-330 155-450 (620)
123 TIGR00595 priA primosomal prot 100.0 1.6E-27 3.4E-32 271.4 25.9 305 433-779 1-393 (505)
124 cd00268 DEADc DEAD-box helicas 100.0 4.1E-27 8.9E-32 240.4 24.3 202 392-604 1-202 (203)
125 KOG0947|consensus 100.0 8.9E-27 1.9E-31 260.2 27.6 333 410-777 294-735 (1248)
126 TIGR03817 DECH_helic helicase/ 100.0 5.3E-27 1.2E-31 279.2 27.3 168 1-179 32-206 (742)
127 KOG4284|consensus 99.9 4.1E-28 8.8E-33 260.2 11.6 245 2-334 44-297 (980)
128 KOG0329|consensus 99.9 3.8E-28 8.2E-33 232.7 9.5 234 2-321 61-295 (387)
129 COG1201 Lhr Lhr-like helicases 99.9 9.8E-27 2.1E-31 268.6 22.4 176 3-180 20-196 (814)
130 PRK04914 ATP-dependent helicas 99.9 1.6E-25 3.4E-30 267.0 33.3 345 414-782 152-621 (956)
131 KOG0327|consensus 99.9 1.3E-27 2.8E-32 244.6 12.2 243 1-333 44-287 (397)
132 COG1061 SSL2 DNA or RNA helica 99.9 2.7E-26 5.9E-31 258.5 24.0 297 413-754 35-376 (442)
133 KOG0948|consensus 99.9 7.4E-27 1.6E-31 254.6 16.6 335 414-777 129-550 (1041)
134 COG4581 Superfamily II RNA hel 99.9 4.7E-26 1E-30 266.2 24.4 323 409-766 115-536 (1041)
135 PRK13767 ATP-dependent helicas 99.9 6.8E-26 1.5E-30 275.4 24.6 178 2-179 29-219 (876)
136 PRK12900 secA preprotein trans 99.9 3.7E-25 8.1E-30 255.5 27.0 131 630-770 576-714 (1025)
137 COG1197 Mfd Transcription-repa 99.9 2.4E-24 5.3E-29 251.7 32.5 325 397-767 578-913 (1139)
138 KOG0950|consensus 99.9 3.7E-25 8.1E-30 249.9 23.5 356 397-779 206-623 (1008)
139 TIGR00614 recQ_fam ATP-depende 99.9 3.9E-25 8.5E-30 253.4 21.8 161 1-179 7-174 (470)
140 PRK02362 ski2-like helicase; P 99.9 4.8E-25 1E-29 266.0 23.2 164 1-179 19-183 (737)
141 PLN03137 ATP-dependent DNA hel 99.9 7.6E-25 1.6E-29 257.6 22.6 161 1-179 456-628 (1195)
142 KOG0332|consensus 99.9 6.1E-26 1.3E-30 229.6 11.2 243 1-333 108-354 (477)
143 PRK09401 reverse gyrase; Revie 99.9 1.8E-24 4E-29 265.6 25.3 256 1-333 77-355 (1176)
144 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.3E-24 2.9E-29 252.5 22.4 247 1-332 12-295 (844)
145 PRK11448 hsdR type I restricti 99.9 6.2E-24 1.4E-28 259.4 26.7 324 413-756 412-802 (1123)
146 PF00270 DEAD: DEAD/DEAH box h 99.9 5.7E-24 1.2E-28 210.6 20.6 167 416-592 1-168 (169)
147 cd00268 DEADc DEAD-box helicas 99.9 9E-24 2E-28 215.7 21.4 169 1-178 17-185 (203)
148 COG1202 Superfamily II helicas 99.9 2.4E-24 5.3E-29 229.0 17.4 247 1-334 212-465 (830)
149 TIGR01389 recQ ATP-dependent D 99.9 6E-24 1.3E-28 251.0 21.6 160 1-179 9-174 (591)
150 PRK11057 ATP-dependent DNA hel 99.9 7.4E-24 1.6E-28 249.1 21.8 160 1-179 21-186 (607)
151 PRK00254 ski2-like helicase; P 99.9 1.2E-23 2.7E-28 253.2 23.4 162 1-179 19-181 (720)
152 COG1204 Superfamily II helicas 99.9 5E-23 1.1E-27 242.0 27.0 166 2-181 28-194 (766)
153 PRK14701 reverse gyrase; Provi 99.9 2.7E-23 5.9E-28 260.4 25.9 259 1-333 76-357 (1638)
154 COG4098 comFA Superfamily II D 99.9 5.2E-22 1.1E-26 199.5 29.6 311 414-772 97-421 (441)
155 PRK13103 secA preprotein trans 99.9 6.8E-23 1.5E-27 236.5 26.1 342 403-769 72-593 (913)
156 COG1205 Distinct helicase fami 99.9 3.7E-23 8E-28 246.7 24.7 172 2-181 67-246 (851)
157 PF00270 DEAD: DEAD/DEAH box h 99.9 4E-23 8.6E-28 204.5 19.0 162 7-178 1-163 (169)
158 PRK01172 ski2-like helicase; P 99.9 6E-23 1.3E-27 246.3 23.5 162 2-179 20-181 (674)
159 PRK12326 preprotein translocas 99.9 9.6E-22 2.1E-26 221.4 31.3 343 402-769 67-549 (764)
160 KOG0344|consensus 99.9 1E-23 2.2E-28 227.3 12.3 250 1-330 154-408 (593)
161 COG0514 RecQ Superfamily II DN 99.9 1.7E-23 3.8E-28 233.2 12.6 161 1-180 13-179 (590)
162 TIGR01054 rgy reverse gyrase. 99.9 4.6E-22 9.9E-27 245.1 25.8 254 2-333 76-353 (1171)
163 COG1643 HrpA HrpA-like helicas 99.9 2.2E-21 4.8E-26 226.3 27.6 309 421-768 57-388 (845)
164 PRK12903 secA preprotein trans 99.9 5.4E-21 1.2E-25 218.1 29.8 342 403-769 68-541 (925)
165 KOG0922|consensus 99.9 7.8E-21 1.7E-25 208.5 28.7 320 421-781 58-401 (674)
166 PRK09751 putative ATP-dependen 99.9 7.2E-22 1.6E-26 243.0 22.8 155 25-179 1-171 (1490)
167 PRK12902 secA preprotein trans 99.9 3.6E-20 7.7E-25 212.4 31.0 291 414-726 83-505 (939)
168 TIGR00580 mfd transcription-re 99.9 5.4E-21 1.2E-25 229.7 24.6 155 1-180 448-612 (926)
169 CHL00122 secA preprotein trans 99.9 2.1E-20 4.5E-25 215.1 26.4 343 402-769 65-633 (870)
170 PRK10689 transcription-repair 99.9 1.3E-20 2.8E-25 231.4 24.8 154 1-179 597-760 (1147)
171 PLN03142 Probable chromatin-re 99.9 7.8E-20 1.7E-24 219.1 28.8 322 414-762 169-592 (1033)
172 KOG0923|consensus 99.9 6.9E-20 1.5E-24 198.3 24.2 328 411-778 262-615 (902)
173 COG1203 CRISPR-associated heli 99.8 5.9E-20 1.3E-24 219.5 24.9 337 415-776 196-559 (733)
174 PRK10917 ATP-dependent DNA hel 99.8 1.6E-20 3.5E-25 223.2 19.4 154 1-179 258-421 (681)
175 TIGR01407 dinG_rel DnaQ family 99.8 6.7E-19 1.4E-23 215.2 31.5 122 639-767 660-814 (850)
176 COG1198 PriA Primosomal protei 99.8 3.8E-19 8.2E-24 204.8 26.9 329 413-779 197-615 (730)
177 KOG0949|consensus 99.8 1.3E-19 2.9E-24 203.6 22.0 168 414-595 511-682 (1330)
178 TIGR00643 recG ATP-dependent D 99.8 7.7E-20 1.7E-24 216.2 21.2 159 1-181 232-400 (630)
179 TIGR00631 uvrb excinuclease AB 99.8 4.6E-18 1E-22 198.4 33.2 136 633-777 423-563 (655)
180 COG1110 Reverse gyrase [DNA re 99.8 3E-18 6.5E-23 195.2 30.4 289 405-738 74-416 (1187)
181 KOG0924|consensus 99.8 7.4E-19 1.6E-23 190.5 24.0 314 415-766 357-696 (1042)
182 KOG0352|consensus 99.8 1.1E-20 2.4E-25 194.3 9.0 163 1-181 15-190 (641)
183 TIGR03158 cas3_cyano CRISPR-as 99.8 9.5E-19 2E-23 192.7 23.7 159 9-179 1-193 (357)
184 KOG0920|consensus 99.8 1.2E-18 2.5E-23 202.5 24.7 330 416-769 175-546 (924)
185 PRK12901 secA preprotein trans 99.8 2.3E-18 4.9E-23 199.4 24.7 130 630-769 606-743 (1112)
186 TIGR00348 hsdR type I site-spe 99.8 3.8E-18 8.1E-23 202.0 24.5 314 415-754 239-634 (667)
187 PHA02653 RNA helicase NPH-II; 99.8 2.4E-18 5.2E-23 200.0 22.1 232 7-332 166-418 (675)
188 COG0556 UvrB Helicase subunit 99.8 2E-17 4.3E-22 176.2 25.3 165 576-766 386-556 (663)
189 COG4096 HsdR Type I site-speci 99.8 6.4E-18 1.4E-22 190.0 22.2 316 411-754 162-525 (875)
190 KOG0351|consensus 99.8 8.4E-19 1.8E-23 207.5 15.5 162 1-180 260-433 (941)
191 KOG0926|consensus 99.8 7.6E-18 1.6E-22 185.8 21.4 311 421-766 263-703 (1172)
192 PHA02558 uvsW UvsW helicase; P 99.8 4.4E-18 9.5E-23 196.2 20.5 149 4-179 113-261 (501)
193 TIGR01587 cas3_core CRISPR-ass 99.8 3.3E-18 7.2E-23 190.8 18.6 143 22-178 1-166 (358)
194 PRK05298 excinuclease ABC subu 99.8 2.5E-16 5.4E-21 185.8 33.2 124 635-767 429-557 (652)
195 smart00487 DEXDc DEAD-like hel 99.8 4.7E-17 1E-21 165.6 21.5 187 409-607 3-191 (201)
196 COG4581 Superfamily II RNA hel 99.8 4.4E-18 9.5E-23 199.9 15.5 166 2-189 117-282 (1041)
197 KOG0353|consensus 99.8 1E-17 2.2E-22 169.8 15.5 160 2-179 91-262 (695)
198 PRK12898 secA preprotein trans 99.8 4.3E-17 9.3E-22 186.2 21.3 301 2-333 101-497 (656)
199 PRK07246 bifunctional ATP-depe 99.7 9.4E-16 2E-20 184.6 32.8 143 638-791 633-812 (820)
200 TIGR01970 DEAH_box_HrpB ATP-de 99.7 6.9E-17 1.5E-21 192.6 22.7 149 10-178 7-157 (819)
201 PRK11664 ATP-dependent RNA hel 99.7 5.8E-17 1.3E-21 193.7 21.6 118 10-144 10-127 (812)
202 KOG4150|consensus 99.7 5.6E-17 1.2E-21 172.4 18.0 348 401-772 273-647 (1034)
203 KOG1123|consensus 99.7 2.5E-17 5.4E-22 173.0 13.8 332 381-756 273-636 (776)
204 KOG0349|consensus 99.7 7.9E-18 1.7E-22 173.5 9.6 121 58-179 287-412 (725)
205 KOG0354|consensus 99.7 3E-17 6.6E-22 185.5 14.5 161 5-179 62-223 (746)
206 KOG0385|consensus 99.7 1.4E-15 3.1E-20 168.0 26.4 328 413-767 166-599 (971)
207 PRK13766 Hef nuclease; Provisi 99.7 2.2E-16 4.7E-21 193.7 22.0 161 4-179 14-174 (773)
208 KOG0947|consensus 99.7 6.1E-17 1.3E-21 182.3 15.4 165 2-192 295-459 (1248)
209 PRK12899 secA preprotein trans 99.7 6E-17 1.3E-21 187.7 14.3 134 1-147 85-229 (970)
210 COG1111 MPH1 ERCC4-like helica 99.7 7.8E-16 1.7E-20 164.2 20.7 160 5-179 15-174 (542)
211 smart00487 DEXDc DEAD-like hel 99.7 4.7E-16 1E-20 158.2 18.2 167 1-179 4-172 (201)
212 PRK05580 primosome assembly pr 99.7 7.3E-17 1.6E-21 191.2 14.0 160 5-186 144-313 (679)
213 TIGR03714 secA2 accessory Sec 99.7 9.6E-16 2.1E-20 177.3 20.7 132 6-147 69-209 (762)
214 KOG0925|consensus 99.7 6.6E-15 1.4E-19 154.7 24.6 331 391-766 26-386 (699)
215 KOG0948|consensus 99.7 1.1E-16 2.3E-21 176.0 10.8 158 5-187 129-286 (1041)
216 TIGR00963 secA preprotein tran 99.7 2.5E-16 5.5E-21 180.8 13.7 131 2-147 54-190 (745)
217 PRK09200 preprotein translocas 99.7 2.8E-15 6E-20 175.3 20.6 132 1-146 75-212 (790)
218 COG0653 SecA Preprotein transl 99.7 1.5E-14 3.2E-19 166.4 25.1 332 414-767 78-545 (822)
219 cd00079 HELICc Helicase superf 99.7 1.5E-15 3.3E-20 143.0 14.4 120 636-763 12-131 (131)
220 PRK08074 bifunctional ATP-depe 99.7 1.6E-13 3.4E-18 168.8 35.4 132 639-776 738-904 (928)
221 KOG0390|consensus 99.6 7.8E-14 1.7E-18 160.0 28.8 343 414-779 238-722 (776)
222 PF00271 Helicase_C: Helicase 99.6 6.6E-16 1.4E-20 130.6 8.2 72 684-755 7-78 (78)
223 TIGR00603 rad25 DNA repair hel 99.6 7.3E-15 1.6E-19 170.1 19.2 151 5-181 255-415 (732)
224 TIGR03117 cas_csf4 CRISPR-asso 99.6 1.4E-13 2.9E-18 158.3 28.4 106 657-767 470-616 (636)
225 PRK13104 secA preprotein trans 99.6 8.5E-15 1.8E-19 170.6 18.7 127 6-146 83-215 (896)
226 COG1061 SSL2 DNA or RNA helica 99.6 2.1E-15 4.5E-20 170.4 12.9 146 5-179 36-185 (442)
227 PF13959 DUF4217: Domain of un 99.6 7.9E-16 1.7E-20 122.0 6.6 62 818-880 2-63 (65)
228 PRK09694 helicase Cas3; Provis 99.6 3.3E-14 7.2E-19 169.6 22.6 166 4-179 285-482 (878)
229 COG1110 Reverse gyrase [DNA re 99.6 5.5E-14 1.2E-18 160.9 21.5 264 2-334 80-363 (1187)
230 COG1200 RecG RecG-like helicas 99.6 3E-14 6.5E-19 159.0 17.7 170 2-196 260-440 (677)
231 KOG0387|consensus 99.6 1.6E-13 3.4E-18 153.0 21.9 338 414-777 205-671 (923)
232 TIGR00595 priA primosomal prot 99.6 7.3E-15 1.6E-19 167.9 10.1 140 24-185 1-147 (505)
233 PF04851 ResIII: Type III rest 99.6 2.4E-14 5.1E-19 143.7 12.5 154 5-178 3-183 (184)
234 cd00046 DEXDc DEAD-like helica 99.6 1.1E-13 2.4E-18 132.1 16.6 144 430-586 1-144 (144)
235 COG4889 Predicted helicase [Ge 99.5 1.5E-14 3.2E-19 161.3 10.0 322 411-755 158-573 (1518)
236 cd00046 DEXDc DEAD-like helica 99.5 1.8E-13 4E-18 130.6 16.5 144 21-177 1-144 (144)
237 KOG0950|consensus 99.5 3.4E-14 7.3E-19 162.0 12.2 166 2-180 220-390 (1008)
238 PF04851 ResIII: Type III rest 99.5 6E-14 1.3E-18 140.8 11.8 154 414-587 3-183 (184)
239 PRK11131 ATP-dependent RNA hel 99.5 9E-13 2E-17 160.6 22.8 145 10-177 79-228 (1294)
240 KOG0392|consensus 99.5 2.7E-12 5.8E-17 148.8 25.0 339 414-766 975-1453(1549)
241 KOG0953|consensus 99.5 5.8E-13 1.3E-17 142.9 17.7 280 432-779 194-488 (700)
242 PRK12904 preprotein translocas 99.5 6.9E-13 1.5E-17 154.8 19.4 127 5-146 81-214 (830)
243 COG1199 DinG Rad3-related DNA 99.5 5.7E-12 1.2E-16 151.8 27.2 120 638-766 464-616 (654)
244 PRK11747 dinG ATP-dependent DN 99.5 5E-11 1.1E-15 142.2 32.7 119 638-767 520-674 (697)
245 COG1198 PriA Primosomal protei 99.5 3.6E-13 7.8E-18 155.8 12.8 170 4-191 197-373 (730)
246 PRK11448 hsdR type I restricti 99.5 2E-12 4.4E-17 159.1 20.1 160 5-179 413-596 (1123)
247 COG1197 Mfd Transcription-repa 99.4 2.4E-12 5.2E-17 152.1 19.5 162 1-187 591-762 (1139)
248 smart00490 HELICc helicase sup 99.4 2.8E-13 6E-18 115.8 8.7 80 673-755 3-82 (82)
249 KOG0389|consensus 99.4 5.8E-12 1.3E-16 140.5 21.1 140 636-783 761-905 (941)
250 PRK14873 primosome assembly pr 99.4 7.2E-12 1.6E-16 146.3 21.4 135 437-595 168-312 (665)
251 KOG1000|consensus 99.4 4.6E-11 1E-15 126.5 24.9 322 414-762 198-596 (689)
252 TIGR02562 cas3_yersinia CRISPR 99.4 1.1E-11 2.4E-16 145.4 22.5 345 414-772 408-899 (1110)
253 COG4098 comFA Superfamily II D 99.4 2.1E-11 4.5E-16 123.8 19.6 145 5-179 97-245 (441)
254 TIGR01967 DEAH_box_HrpA ATP-de 99.4 2.4E-11 5.3E-16 148.9 21.6 148 12-178 74-222 (1283)
255 TIGR00604 rad3 DNA repair heli 99.4 2.7E-10 5.9E-15 137.3 30.1 75 409-489 5-83 (705)
256 KOG0384|consensus 99.4 9.1E-12 2E-16 145.2 15.9 340 413-775 369-821 (1373)
257 PRK13107 preprotein translocas 99.3 2E-11 4.3E-16 142.3 15.9 128 6-147 83-216 (908)
258 PF06862 DUF1253: Protein of u 99.3 1.8E-09 3.9E-14 118.3 28.9 302 466-775 37-423 (442)
259 TIGR00348 hsdR type I site-spe 99.2 2.3E-10 5E-15 136.0 13.9 153 6-179 239-404 (667)
260 KOG0949|consensus 99.1 1E-10 2.2E-15 133.1 9.3 164 5-182 511-676 (1330)
261 COG4096 HsdR Type I site-speci 99.1 1.1E-09 2.3E-14 124.7 16.2 150 4-179 164-322 (875)
262 KOG2340|consensus 99.1 3.4E-09 7.3E-14 113.6 18.9 348 412-769 214-670 (698)
263 KOG1002|consensus 99.1 1.3E-08 2.9E-13 108.0 21.3 138 635-778 619-761 (791)
264 PRK04914 ATP-dependent helicas 99.1 3.3E-09 7.1E-14 128.2 18.4 161 5-179 152-317 (956)
265 PF02399 Herpes_ori_bp: Origin 99.1 1.8E-08 3.9E-13 116.1 22.8 292 432-766 52-387 (824)
266 COG1203 CRISPR-associated heli 99.1 1.7E-09 3.6E-14 130.2 15.2 166 6-179 196-382 (733)
267 PRK12906 secA preprotein trans 99.0 4.9E-09 1.1E-13 122.5 18.1 128 5-146 80-213 (796)
268 KOG0391|consensus 99.0 1.2E-08 2.6E-13 118.0 18.5 125 635-767 1259-1387(1958)
269 PF07652 Flavi_DEAD: Flaviviru 99.0 2.1E-09 4.5E-14 97.9 9.7 137 429-590 4-140 (148)
270 PF07517 SecA_DEAD: SecA DEAD- 99.0 5.8E-09 1.3E-13 107.7 14.0 139 402-555 66-210 (266)
271 TIGR03117 cas_csf4 CRISPR-asso 99.0 5.6E-09 1.2E-13 120.6 15.4 59 16-81 12-70 (636)
272 TIGR01407 dinG_rel DnaQ family 99.0 6.2E-09 1.3E-13 128.1 15.2 69 2-80 243-316 (850)
273 PRK12326 preprotein translocas 99.0 2.5E-08 5.4E-13 114.1 18.6 130 2-146 76-211 (764)
274 KOG0388|consensus 98.9 4.3E-08 9.4E-13 108.3 19.3 118 635-760 1027-1145(1185)
275 KOG0386|consensus 98.9 5.9E-09 1.3E-13 119.9 13.1 110 657-769 726-838 (1157)
276 PRK14873 primosome assembly pr 98.9 1.4E-09 3.1E-14 127.3 8.2 145 24-189 164-315 (665)
277 smart00488 DEXDc2 DEAD-like he 98.9 1.1E-08 2.3E-13 109.2 14.0 76 410-489 5-84 (289)
278 smart00489 DEXDc3 DEAD-like he 98.9 1.1E-08 2.3E-13 109.2 14.0 76 410-489 5-84 (289)
279 PLN03142 Probable chromatin-re 98.9 7.2E-08 1.6E-12 117.1 21.2 156 5-179 169-331 (1033)
280 KOG4439|consensus 98.9 9.2E-08 2E-12 106.2 18.8 122 634-762 727-851 (901)
281 PRK07246 bifunctional ATP-depe 98.9 2.1E-08 4.5E-13 121.6 15.3 82 2-95 243-329 (820)
282 COG1643 HrpA HrpA-like helicas 98.8 2.4E-07 5.3E-12 109.7 21.2 152 9-179 54-207 (845)
283 smart00488 DEXDc2 DEAD-like he 98.8 4.6E-08 9.9E-13 104.3 13.7 72 6-80 9-84 (289)
284 smart00489 DEXDc3 DEAD-like he 98.8 4.6E-08 9.9E-13 104.3 13.7 72 6-80 9-84 (289)
285 PF07652 Flavi_DEAD: Flaviviru 98.8 2E-08 4.3E-13 91.6 8.9 138 19-181 3-140 (148)
286 COG0610 Type I site-specific r 98.7 1.5E-06 3.2E-11 107.0 25.3 139 430-587 274-414 (962)
287 KOG0920|consensus 98.7 5.8E-07 1.3E-11 106.1 20.4 158 7-181 175-333 (924)
288 PF00176 SNF2_N: SNF2 family N 98.7 4.2E-08 9E-13 106.8 10.3 146 429-587 25-173 (299)
289 COG0553 HepA Superfamily II DN 98.7 1.7E-07 3.6E-12 118.2 16.5 120 636-763 692-816 (866)
290 PF00176 SNF2_N: SNF2 family N 98.7 6.4E-08 1.4E-12 105.3 9.2 159 9-179 1-174 (299)
291 KOG1123|consensus 98.6 7E-08 1.5E-12 102.9 8.3 151 5-181 302-462 (776)
292 PRK13103 secA preprotein trans 98.6 1.6E-07 3.5E-12 110.3 10.1 131 5-149 82-219 (913)
293 KOG0922|consensus 98.6 3.1E-06 6.7E-11 94.8 19.2 147 12-178 58-206 (674)
294 PRK08074 bifunctional ATP-depe 98.5 7.2E-07 1.6E-11 110.5 15.2 63 5-75 257-323 (928)
295 PRK12902 secA preprotein trans 98.5 2.3E-06 5.1E-11 100.1 16.1 127 6-146 86-218 (939)
296 PF07517 SecA_DEAD: SecA DEAD- 98.5 1.9E-06 4.1E-11 89.2 13.9 128 5-146 77-210 (266)
297 KOG0921|consensus 98.5 7.7E-07 1.7E-11 101.3 10.8 321 424-766 388-773 (1282)
298 KOG0926|consensus 98.4 4.1E-06 8.8E-11 94.6 14.7 118 12-144 263-383 (1172)
299 KOG1015|consensus 98.4 6.9E-06 1.5E-10 94.1 16.5 122 637-763 1127-1271(1567)
300 PRK11747 dinG ATP-dependent DN 98.4 4.1E-06 8.9E-11 100.5 14.5 65 2-75 23-96 (697)
301 KOG2340|consensus 98.3 6.9E-06 1.5E-10 88.9 13.0 209 4-253 215-494 (698)
302 PRK15483 type III restriction- 98.3 9.1E-06 2E-10 97.1 14.4 144 22-179 61-240 (986)
303 PRK15483 type III restriction- 98.3 1.2E-05 2.6E-10 96.2 15.2 68 710-777 501-578 (986)
304 KOG4150|consensus 98.2 4.4E-06 9.6E-11 90.6 8.2 137 4-147 285-426 (1034)
305 PRK12903 secA preprotein trans 98.1 9.1E-05 2E-09 86.8 18.8 128 5-146 78-211 (925)
306 KOG0385|consensus 98.1 2.9E-05 6.3E-10 87.8 13.4 156 5-179 167-329 (971)
307 COG1199 DinG Rad3-related DNA 98.1 1.2E-05 2.7E-10 97.1 11.1 69 4-80 14-86 (654)
308 CHL00122 secA preprotein trans 98.1 9E-06 1.9E-10 95.5 9.0 130 6-149 77-213 (870)
309 TIGR00604 rad3 DNA repair heli 98.0 1.8E-05 3.8E-10 95.9 11.1 73 2-80 7-83 (705)
310 PF13086 AAA_11: AAA domain; P 98.0 3E-05 6.5E-10 80.9 11.6 74 414-488 1-75 (236)
311 PF13086 AAA_11: AAA domain; P 98.0 1.6E-05 3.5E-10 82.9 8.8 74 5-79 1-75 (236)
312 PF02562 PhoH: PhoH-like prote 98.0 9.3E-06 2E-10 80.7 6.4 60 412-478 2-61 (205)
313 PF06862 DUF1253: Protein of u 98.0 0.00018 3.9E-09 79.6 16.9 230 56-330 36-321 (442)
314 PF13604 AAA_30: AAA domain; P 98.0 4.6E-05 1E-09 76.5 10.8 63 414-485 1-65 (196)
315 TIGR02562 cas3_yersinia CRISPR 98.0 4.3E-05 9.3E-10 91.2 11.6 162 7-179 410-636 (1110)
316 COG3587 Restriction endonuclea 97.9 0.00044 9.4E-09 79.8 18.6 69 709-777 482-563 (985)
317 COG4889 Predicted helicase [Ge 97.9 2.8E-05 6.1E-10 88.8 9.0 129 4-147 160-318 (1518)
318 TIGR00596 rad1 DNA repair prot 97.9 0.00022 4.8E-09 85.6 16.9 71 514-588 4-74 (814)
319 KOG0390|consensus 97.9 0.00022 4.8E-09 83.3 16.1 162 4-178 237-415 (776)
320 KOG0924|consensus 97.9 0.00078 1.7E-08 75.5 18.9 117 11-144 362-479 (1042)
321 PF02399 Herpes_ori_bp: Origin 97.9 0.00016 3.5E-09 84.3 13.6 136 23-179 52-192 (824)
322 KOG0387|consensus 97.8 0.00061 1.3E-08 77.9 17.2 158 4-180 204-378 (923)
323 PF12340 DUF3638: Protein of u 97.8 0.00033 7.1E-09 70.2 12.9 153 391-556 4-186 (229)
324 PF13307 Helicase_C_2: Helicas 97.8 7.1E-05 1.5E-09 73.1 7.9 106 657-766 9-149 (167)
325 KOG0925|consensus 97.8 0.0014 3E-08 70.9 17.7 147 12-177 54-201 (699)
326 PF13604 AAA_30: AAA domain; P 97.7 0.00024 5.2E-09 71.4 11.4 63 5-76 1-65 (196)
327 KOG0391|consensus 97.7 0.00011 2.4E-09 86.3 9.6 155 414-587 615-776 (1958)
328 COG0610 Type I site-specific r 97.7 0.00032 6.9E-09 86.8 13.8 140 21-179 274-415 (962)
329 KOG0389|consensus 97.7 7.5E-05 1.6E-09 85.0 7.4 157 5-178 399-563 (941)
330 PF02562 PhoH: PhoH-like prote 97.7 5.6E-05 1.2E-09 75.2 5.6 60 3-69 2-61 (205)
331 KOG0923|consensus 97.7 0.0015 3.3E-08 73.1 16.8 152 7-177 267-420 (902)
332 KOG1000|consensus 97.6 0.00053 1.1E-08 74.1 12.1 153 4-179 197-350 (689)
333 KOG1803|consensus 97.6 0.0002 4.4E-09 79.7 9.1 65 414-487 185-250 (649)
334 KOG4439|consensus 97.6 0.00017 3.6E-09 81.1 8.3 166 5-179 325-503 (901)
335 PRK10536 hypothetical protein; 97.5 0.0015 3.3E-08 66.9 13.4 61 410-477 55-115 (262)
336 KOG1002|consensus 97.5 0.00044 9.6E-09 74.5 9.4 152 5-177 184-354 (791)
337 KOG1803|consensus 97.5 0.00039 8.4E-09 77.6 8.9 65 5-78 185-250 (649)
338 TIGR00376 DNA helicase, putati 97.4 0.0011 2.3E-08 78.8 13.0 67 413-488 156-223 (637)
339 KOG1016|consensus 97.4 0.014 3E-07 66.6 20.5 108 658-765 720-845 (1387)
340 PF09848 DUF2075: Uncharacteri 97.4 0.0005 1.1E-08 76.2 9.4 95 432-557 4-98 (352)
341 PF13872 AAA_34: P-loop contai 97.4 0.0024 5.3E-08 66.5 13.5 163 414-590 37-224 (303)
342 PF13245 AAA_19: Part of AAA d 97.4 0.00063 1.4E-08 56.2 7.3 59 423-486 3-62 (76)
343 PRK10875 recD exonuclease V su 97.4 0.0021 4.5E-08 75.4 14.2 143 415-584 153-300 (615)
344 PF13872 AAA_34: P-loop contai 97.4 0.0038 8.1E-08 65.2 14.3 167 5-185 37-228 (303)
345 KOG1802|consensus 97.3 0.0013 2.9E-08 73.6 11.0 74 409-490 405-478 (935)
346 TIGR00376 DNA helicase, putati 97.3 0.0018 3.8E-08 77.0 12.9 66 5-79 157-223 (637)
347 TIGR01447 recD exodeoxyribonuc 97.3 0.0029 6.2E-08 74.2 14.4 142 417-584 148-294 (586)
348 PF12340 DUF3638: Protein of u 97.3 0.0018 3.8E-08 65.1 10.5 137 5-150 23-189 (229)
349 KOG1802|consensus 97.3 0.0014 3E-08 73.5 10.4 72 2-81 407-478 (935)
350 PF13245 AAA_19: Part of AAA d 97.3 0.0013 2.8E-08 54.4 7.7 60 13-77 2-62 (76)
351 PRK10536 hypothetical protein; 97.2 0.0031 6.8E-08 64.6 11.3 60 2-68 56-115 (262)
352 KOG0953|consensus 97.0 0.0018 3.9E-08 71.3 8.1 106 23-157 194-299 (700)
353 TIGR01448 recD_rel helicase, p 97.0 0.0047 1E-07 74.6 12.0 65 413-484 322-386 (720)
354 PF09848 DUF2075: Uncharacteri 96.9 0.0026 5.7E-08 70.5 8.8 95 22-147 3-97 (352)
355 PF00580 UvrD-helicase: UvrD/R 96.8 0.0034 7.3E-08 68.6 8.3 125 415-553 1-126 (315)
356 TIGR01447 recD exodeoxyribonuc 96.8 0.015 3.2E-07 68.3 13.7 70 7-80 147-216 (586)
357 PRK10875 recD exonuclease V su 96.8 0.013 2.8E-07 68.9 13.1 70 7-81 154-223 (615)
358 PRK12900 secA preprotein trans 96.8 0.0024 5.3E-08 76.4 7.2 130 8-149 139-275 (1025)
359 PRK12901 secA preprotein trans 96.8 0.0027 5.9E-08 76.0 7.3 130 6-146 168-303 (1112)
360 PRK13889 conjugal transfer rel 96.7 0.009 1.9E-07 73.5 11.7 60 414-482 346-406 (988)
361 COG3587 Restriction endonuclea 96.7 0.0054 1.2E-07 71.2 8.8 144 22-180 76-245 (985)
362 PF00580 UvrD-helicase: UvrD/R 96.7 0.0053 1.1E-07 67.1 8.5 71 6-83 1-71 (315)
363 KOG1132|consensus 96.6 0.01 2.2E-07 69.3 10.4 77 414-490 21-134 (945)
364 KOG1132|consensus 96.6 0.01 2.2E-07 69.4 10.4 77 5-81 21-134 (945)
365 KOG0392|consensus 96.6 0.018 4E-07 69.2 12.2 162 5-179 975-1140(1549)
366 PF13401 AAA_22: AAA domain; P 96.6 0.011 2.4E-07 55.1 8.7 18 429-446 4-21 (131)
367 TIGR02760 TraI_TIGR conjugativ 96.5 0.34 7.5E-06 65.0 25.2 241 414-710 429-686 (1960)
368 PRK06526 transposase; Provisio 96.5 0.017 3.7E-07 60.3 10.6 25 427-451 96-120 (254)
369 KOG1805|consensus 96.5 0.012 2.5E-07 69.4 10.0 140 397-555 657-809 (1100)
370 TIGR01448 recD_rel helicase, p 96.5 0.023 4.9E-07 68.8 13.0 63 5-74 323-385 (720)
371 TIGR02768 TraA_Ti Ti-type conj 96.5 0.02 4.4E-07 69.5 12.5 61 414-483 352-413 (744)
372 COG1875 NYN ribonuclease and A 96.5 0.0093 2E-07 63.0 8.1 66 408-479 222-289 (436)
373 KOG0921|consensus 96.4 0.027 5.9E-07 65.6 11.8 147 17-179 390-537 (1282)
374 COG3421 Uncharacterized protei 96.4 0.0044 9.6E-08 68.9 5.3 147 434-588 2-167 (812)
375 KOG1805|consensus 96.3 0.018 3.9E-07 67.9 10.2 130 4-147 668-810 (1100)
376 PF05970 PIF1: PIF1-like helic 96.3 0.015 3.2E-07 64.7 9.3 59 415-482 2-66 (364)
377 PHA02533 17 large terminase pr 96.3 0.051 1.1E-06 63.0 13.8 151 5-176 59-209 (534)
378 KOG0386|consensus 96.3 0.0064 1.4E-07 71.6 6.3 157 5-179 394-556 (1157)
379 KOG0384|consensus 96.2 0.033 7.1E-07 67.4 11.9 156 4-179 369-537 (1373)
380 COG0556 UvrB Helicase subunit 96.2 0.0049 1.1E-07 67.8 4.8 115 465-594 445-565 (663)
381 PRK08181 transposase; Validate 96.2 0.054 1.2E-06 57.0 12.3 36 6-41 88-127 (269)
382 PF13401 AAA_22: AAA domain; P 96.2 0.014 3.1E-07 54.3 7.4 24 19-42 3-26 (131)
383 PHA02533 17 large terminase pr 96.2 0.04 8.7E-07 63.9 12.3 151 414-585 59-209 (534)
384 KOG0989|consensus 96.1 0.033 7.2E-07 57.6 9.7 47 538-588 125-171 (346)
385 KOG0388|consensus 96.1 0.016 3.5E-07 65.6 7.8 157 5-180 567-736 (1185)
386 smart00492 HELICc3 helicase su 96.0 0.038 8.3E-07 51.9 9.2 74 691-764 28-135 (141)
387 PRK13889 conjugal transfer rel 96.0 0.054 1.2E-06 66.9 12.7 60 5-73 346-406 (988)
388 PRK04296 thymidine kinase; Pro 96.0 0.012 2.6E-07 58.9 5.9 35 431-474 4-38 (190)
389 PRK13826 Dtr system oriT relax 96.0 0.14 3E-06 63.8 15.9 62 413-483 380-442 (1102)
390 cd00009 AAA The AAA+ (ATPases 95.9 0.057 1.2E-06 51.0 10.4 18 20-37 19-36 (151)
391 PRK08181 transposase; Validate 95.9 0.18 3.9E-06 53.1 14.4 45 428-482 105-149 (269)
392 PRK12723 flagellar biosynthesi 95.9 0.11 2.4E-06 57.5 13.4 132 429-597 174-309 (388)
393 PF14617 CMS1: U3-containing 9 95.8 0.022 4.7E-07 58.6 7.1 87 55-144 124-212 (252)
394 PRK07952 DNA replication prote 95.8 0.15 3.3E-06 52.8 13.3 40 6-46 77-124 (244)
395 smart00491 HELICc2 helicase su 95.8 0.04 8.8E-07 51.9 8.3 69 697-765 31-137 (142)
396 PRK06526 transposase; Provisio 95.7 0.043 9.4E-07 57.3 9.0 28 17-44 95-122 (254)
397 cd00009 AAA The AAA+ (ATPases 95.7 0.09 2E-06 49.6 10.6 17 429-445 19-35 (151)
398 TIGR02768 TraA_Ti Ti-type conj 95.7 0.081 1.8E-06 64.4 12.3 61 5-74 352-413 (744)
399 PF14617 CMS1: U3-containing 9 95.6 0.026 5.7E-07 58.0 6.7 87 464-553 124-212 (252)
400 PF05970 PIF1: PIF1-like helic 95.6 0.043 9.4E-07 61.0 9.1 60 5-73 1-66 (364)
401 PRK00149 dnaA chromosomal repl 95.6 0.72 1.6E-05 53.1 19.3 45 430-482 149-193 (450)
402 PF03354 Terminase_1: Phage Te 95.5 0.1 2.2E-06 60.4 12.0 151 8-175 1-161 (477)
403 PF05876 Terminase_GpA: Phage 95.5 0.036 7.8E-07 64.9 8.0 158 5-179 16-181 (557)
404 PF05621 TniB: Bacterial TniB 95.3 0.075 1.6E-06 55.8 8.9 120 21-173 62-186 (302)
405 COG1484 DnaC DNA replication p 95.3 0.068 1.5E-06 55.9 8.7 65 3-77 81-152 (254)
406 PRK07952 DNA replication prote 95.3 0.29 6.3E-06 50.7 13.1 49 540-590 160-209 (244)
407 PRK11889 flhF flagellar biosyn 95.3 0.34 7.3E-06 53.1 13.8 129 430-597 242-374 (436)
408 PRK12723 flagellar biosynthesi 95.2 0.21 4.5E-06 55.4 12.5 122 21-179 175-299 (388)
409 PF13871 Helicase_C_4: Helicas 95.1 0.074 1.6E-06 55.5 8.0 77 701-777 52-140 (278)
410 PRK11034 clpA ATP-dependent Cl 95.1 0.42 9.1E-06 57.9 15.5 269 19-446 206-505 (758)
411 PRK04296 thymidine kinase; Pro 95.1 0.071 1.5E-06 53.3 7.7 35 22-65 4-38 (190)
412 COG0653 SecA Preprotein transl 95.0 0.084 1.8E-06 62.7 9.1 128 7-146 80-213 (822)
413 cd01124 KaiC KaiC is a circadi 95.0 0.15 3.3E-06 50.8 9.9 48 432-489 2-49 (187)
414 PRK08084 DNA replication initi 94.9 0.42 9.1E-06 49.6 13.2 44 543-588 98-142 (235)
415 PRK08727 hypothetical protein; 94.9 0.19 4.1E-06 52.1 10.5 46 541-588 92-138 (233)
416 PRK12377 putative replication 94.9 0.46 1E-05 49.4 13.2 46 429-484 101-146 (248)
417 PRK06921 hypothetical protein; 94.8 0.43 9.3E-06 50.4 13.2 44 429-481 117-160 (266)
418 KOG0298|consensus 94.8 0.086 1.9E-06 64.2 8.4 156 428-593 373-557 (1394)
419 PRK14087 dnaA chromosomal repl 94.8 0.25 5.5E-06 56.4 12.0 110 430-589 142-252 (450)
420 PRK13826 Dtr system oriT relax 94.7 0.37 8.1E-06 60.1 13.9 60 5-73 381-441 (1102)
421 PHA03368 DNA packaging termina 94.7 0.37 7.9E-06 55.9 12.7 136 20-179 254-392 (738)
422 PRK06893 DNA replication initi 94.6 0.19 4.1E-06 51.9 9.7 46 541-588 90-136 (229)
423 PHA03368 DNA packaging termina 94.6 0.45 9.8E-06 55.1 13.2 162 399-588 228-392 (738)
424 COG1875 NYN ribonuclease and A 94.6 0.19 4.2E-06 53.4 9.5 64 1-70 224-289 (436)
425 KOG0989|consensus 94.6 0.22 4.9E-06 51.7 9.6 45 130-178 126-170 (346)
426 cd01124 KaiC KaiC is a circadi 94.5 0.44 9.5E-06 47.4 11.9 48 23-80 2-49 (187)
427 COG3421 Uncharacterized protei 94.5 0.063 1.4E-06 60.1 6.0 146 25-179 2-167 (812)
428 PRK08116 hypothetical protein; 94.5 0.54 1.2E-05 49.7 12.9 44 430-483 115-158 (268)
429 PRK14712 conjugal transfer nic 94.4 0.49 1.1E-05 61.2 14.4 65 414-483 835-901 (1623)
430 PF05876 Terminase_GpA: Phage 94.4 0.074 1.6E-06 62.3 6.8 156 414-587 16-180 (557)
431 cd01120 RecA-like_NTPases RecA 94.4 0.71 1.5E-05 44.4 12.9 38 432-478 2-39 (165)
432 TIGR00362 DnaA chromosomal rep 94.4 0.31 6.8E-06 55.2 11.7 42 431-480 138-179 (405)
433 smart00382 AAA ATPases associa 94.4 0.059 1.3E-06 50.4 5.0 42 429-479 2-43 (148)
434 PRK12377 putative replication 94.3 0.49 1.1E-05 49.2 11.9 59 7-75 80-146 (248)
435 TIGR02881 spore_V_K stage V sp 94.3 0.25 5.3E-06 52.3 10.0 21 21-41 43-63 (261)
436 PRK14722 flhF flagellar biosyn 94.3 0.38 8.2E-06 53.0 11.5 25 428-452 136-160 (374)
437 cd01120 RecA-like_NTPases RecA 94.3 0.89 1.9E-05 43.7 13.4 39 23-70 2-40 (165)
438 PF03354 Terminase_1: Phage Te 94.3 0.14 2.9E-06 59.4 8.6 150 417-583 1-160 (477)
439 PF00308 Bac_DnaA: Bacterial d 94.2 0.56 1.2E-05 48.0 12.1 106 22-179 36-142 (219)
440 PRK00149 dnaA chromosomal repl 94.2 0.34 7.4E-06 55.7 11.7 105 22-179 150-255 (450)
441 PRK05642 DNA replication initi 94.2 0.3 6.6E-06 50.6 10.2 45 541-588 96-141 (234)
442 PRK08116 hypothetical protein; 94.2 0.57 1.2E-05 49.6 12.4 25 22-47 116-140 (268)
443 PRK14974 cell division protein 94.2 0.54 1.2E-05 51.2 12.3 54 541-597 221-275 (336)
444 COG2805 PilT Tfp pilus assembl 94.2 0.063 1.4E-06 55.5 4.8 47 390-457 106-152 (353)
445 PRK05703 flhF flagellar biosyn 94.1 1.1 2.3E-05 50.8 15.1 129 429-596 221-353 (424)
446 PRK07003 DNA polymerase III su 94.1 0.31 6.8E-06 57.7 10.9 39 541-583 118-156 (830)
447 PRK05642 DNA replication initi 94.1 0.32 7E-06 50.3 10.2 46 132-180 96-142 (234)
448 TIGR03420 DnaA_homol_Hda DnaA 94.1 0.31 6.8E-06 50.2 10.0 18 429-446 38-55 (226)
449 PF00308 Bac_DnaA: Bacterial d 94.1 0.36 7.7E-06 49.4 10.2 106 432-589 37-143 (219)
450 smart00382 AAA ATPases associa 94.0 0.14 3.1E-06 47.8 6.8 42 20-70 2-43 (148)
451 PRK08727 hypothetical protein; 94.0 0.39 8.4E-06 49.7 10.5 18 22-39 43-60 (233)
452 PRK06835 DNA replication prote 94.0 1.4 3.1E-05 47.9 15.2 45 429-483 183-227 (329)
453 PHA03333 putative ATPase subun 94.0 0.74 1.6E-05 53.7 13.4 150 6-177 170-332 (752)
454 PRK11054 helD DNA helicase IV; 94.0 0.23 4.9E-06 59.7 9.8 70 5-81 196-265 (684)
455 TIGR02881 spore_V_K stage V sp 94.0 0.32 6.9E-06 51.4 10.0 18 430-447 43-60 (261)
456 PF00448 SRP54: SRP54-type pro 93.9 0.97 2.1E-05 45.3 12.8 122 432-590 4-129 (196)
457 PTZ00112 origin recognition co 93.8 0.75 1.6E-05 55.1 13.1 44 132-176 868-911 (1164)
458 PRK10919 ATP-dependent DNA hel 93.8 0.16 3.4E-06 61.4 8.1 71 414-491 2-72 (672)
459 PTZ00112 origin recognition co 93.7 0.39 8.4E-06 57.4 10.6 29 541-570 868-896 (1164)
460 PRK10919 ATP-dependent DNA hel 93.7 0.16 3.5E-06 61.3 8.0 70 5-81 2-71 (672)
461 PRK11889 flhF flagellar biosyn 93.6 0.89 1.9E-05 49.9 12.5 120 21-179 242-364 (436)
462 CHL00181 cbbX CbbX; Provisiona 93.6 0.6 1.3E-05 49.9 11.2 22 20-41 59-80 (287)
463 TIGR02785 addA_Gpos recombinat 93.6 0.32 6.9E-06 63.0 10.7 125 414-553 1-126 (1232)
464 PRK13709 conjugal transfer nic 93.5 0.57 1.2E-05 61.4 12.8 64 414-482 967-1032(1747)
465 KOG1001|consensus 93.5 0.32 6.9E-06 57.7 9.7 117 431-558 154-270 (674)
466 PRK06893 DNA replication initi 93.5 0.3 6.5E-06 50.4 8.5 48 132-181 90-138 (229)
467 PRK12323 DNA polymerase III su 93.5 0.69 1.5E-05 54.1 12.0 41 541-585 123-163 (700)
468 TIGR00362 DnaA chromosomal rep 93.5 0.57 1.2E-05 53.2 11.5 43 22-72 138-180 (405)
469 PRK08084 DNA replication initi 93.4 0.43 9.4E-06 49.5 9.7 44 134-179 98-142 (235)
470 PRK14964 DNA polymerase III su 93.4 0.8 1.7E-05 52.4 12.5 40 540-583 114-153 (491)
471 PRK14086 dnaA chromosomal repl 93.4 1.9 4.1E-05 50.5 15.5 49 540-590 375-424 (617)
472 PRK14087 dnaA chromosomal repl 93.4 0.67 1.4E-05 53.0 11.9 105 22-176 143-248 (450)
473 PRK00411 cdc6 cell division co 93.4 0.55 1.2E-05 53.1 11.4 25 430-455 56-80 (394)
474 COG1474 CDC6 Cdc6-related prot 93.3 0.6 1.3E-05 51.6 10.8 21 21-41 43-63 (366)
475 COG1474 CDC6 Cdc6-related prot 93.2 0.49 1.1E-05 52.3 10.1 26 430-456 43-68 (366)
476 PF05621 TniB: Bacterial TniB 93.2 0.67 1.5E-05 48.9 10.5 119 430-582 62-186 (302)
477 TIGR01075 uvrD DNA helicase II 93.0 0.21 4.6E-06 61.1 7.7 71 4-81 3-73 (715)
478 PLN03025 replication factor C 93.0 1.1 2.5E-05 48.8 12.6 17 430-446 35-51 (319)
479 PRK08769 DNA polymerase III su 93.0 1.1 2.5E-05 48.3 12.2 44 3-47 2-52 (319)
480 TIGR03420 DnaA_homol_Hda DnaA 92.9 0.78 1.7E-05 47.2 10.7 21 20-40 38-58 (226)
481 PHA03372 DNA packaging termina 92.9 2.3 5E-05 48.9 14.7 158 399-587 176-338 (668)
482 PRK14712 conjugal transfer nic 92.9 0.87 1.9E-05 59.0 12.7 63 5-74 835-901 (1623)
483 PRK11773 uvrD DNA-dependent he 92.9 0.24 5.3E-06 60.5 7.8 71 4-81 8-78 (721)
484 COG0553 HepA Superfamily II DN 92.8 0.4 8.7E-06 60.6 10.1 159 4-177 337-510 (866)
485 PRK14958 DNA polymerase III su 92.8 0.77 1.7E-05 53.3 11.3 39 541-583 118-156 (509)
486 PRK11054 helD DNA helicase IV; 92.8 0.3 6.6E-06 58.6 8.3 71 413-490 195-265 (684)
487 PRK07994 DNA polymerase III su 92.8 1.7 3.7E-05 51.5 14.2 38 541-582 118-155 (647)
488 TIGR02760 TraI_TIGR conjugativ 92.8 1.1 2.4E-05 60.4 14.2 134 5-174 429-564 (1960)
489 PRK06835 DNA replication prote 92.8 1.2 2.5E-05 48.5 12.1 45 20-74 183-227 (329)
490 PRK14961 DNA polymerase III su 92.8 1.9 4.2E-05 47.9 14.2 39 541-583 118-156 (363)
491 PRK14956 DNA polymerase III su 92.8 0.77 1.7E-05 52.0 10.9 28 541-572 120-147 (484)
492 TIGR02785 addA_Gpos recombinat 92.7 0.53 1.1E-05 61.0 10.9 125 5-144 1-126 (1232)
493 TIGR01075 uvrD DNA helicase II 92.7 0.27 5.8E-06 60.2 7.9 72 413-491 3-74 (715)
494 PHA03333 putative ATPase subun 92.7 1 2.3E-05 52.5 11.9 138 428-587 186-333 (752)
495 TIGR00631 uvrb excinuclease AB 92.7 0.27 5.9E-06 58.7 7.6 66 5-82 9-79 (655)
496 PRK00411 cdc6 cell division co 92.6 0.38 8.3E-06 54.4 8.6 45 133-177 138-183 (394)
497 PRK05298 excinuclease ABC subu 92.6 0.54 1.2E-05 56.5 10.1 66 5-82 12-82 (652)
498 cd01122 GP4d_helicase GP4d_hel 92.6 0.9 2E-05 48.3 10.9 172 400-585 2-190 (271)
499 PRK05703 flhF flagellar biosyn 92.5 2.2 4.7E-05 48.4 14.2 121 20-179 221-344 (424)
500 TIGR01074 rep ATP-dependent DN 92.5 0.46 1E-05 57.8 9.6 82 414-502 1-82 (664)
No 1
>KOG0348|consensus
Probab=100.00 E-value=6.9e-102 Score=808.72 Aligned_cols=519 Identities=48% Similarity=0.784 Sum_probs=474.0
Q ss_pred cccccccccccCCCCC-CCCCCCCCCCCccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEE
Q psy15524 356 VKSGPISSLFQNNPDI-PNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLV 434 (930)
Q Consensus 356 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv 434 (930)
....+.++.+.+++++ ++++.+.++++.+..|....|.+| ||+|.+.+.|.+.|++..||.+|+++||.+++|+|++|
T Consensus 101 ~Q~~k~~~~~~~~~~i~~~lh~~vvk~v~e~~fts~~f~~L-GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV 179 (708)
T KOG0348|consen 101 KQFAKDSSKAKENPDIAPNLHRPVVKQVSEAPFTSAAFASL-GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALV 179 (708)
T ss_pred hhhhhchhhhccCCccchhhcchhhccccccccccccchhc-CCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEE
Confidence 3344556778888888 688888999999999999999999 99999999999999999999999999999999999999
Q ss_pred EccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHH
Q psy15524 435 RSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI 514 (930)
Q Consensus 435 ~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 514 (930)
.|+||||||++|++|+++.|+.+.+++.|.+|+.+|||+||||||.|+|+.++++.+.+.|++++.++||++.+++++++
T Consensus 180 ~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARL 259 (708)
T KOG0348|consen 180 RAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARL 259 (708)
T ss_pred EcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh----------cCccceEEEEcc
Q psy15524 515 RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK----------QKPQFQSILLSA 584 (930)
Q Consensus 515 ~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~----------~~~~~q~vl~SA 584 (930)
++|++|+|+|||||+||+.++..+.+++++|||+||||+++++||++++..|++.+.. .+++.|.+++||
T Consensus 260 RKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSA 339 (708)
T KOG0348|consen 260 RKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSA 339 (708)
T ss_pred hcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999943 233589999999
Q ss_pred ccCHHHHHHHhhhcCCCEEEEccCCCC----------------cccCccceecCCCceEEEEEcCchhhHHHHHHHHHhh
Q psy15524 585 TLTPAVQRLAGMTLQNPIQIDAADSTD----------------IHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 648 (930)
Q Consensus 585 T~~~~~~~l~~~~~~~~~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 648 (930)
|+++.+.++++..+.||+.|..+.... .....+.+.+|+.+.|.|.++|++.|+..|.++|.+.
T Consensus 340 TLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~ 419 (708)
T KOG0348|consen 340 TLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNK 419 (708)
T ss_pred hhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHH
Confidence 999999999999999999998332211 0111244789999999999999999999999999998
Q ss_pred ccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC-------------------CceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 649 CQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-------------------NIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 649 ~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~-------------------~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+.... ..++|||+++++.+++++++|.+.+.. +..++.+||+|+|++|..+++.|...
T Consensus 420 ~k~~~---~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~ 496 (708)
T KOG0348|consen 420 VKFEE---KQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS 496 (708)
T ss_pred hhhhh---hceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccc
Confidence 87655 679999999999999999999876532 56799999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCCccchhchHH
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKD 789 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 789 (930)
+..||+||||++||+|+|+|+|||+||+|.++++|+||+|||+|+|..|.+++|+.|.|.+|++.++.+.+.+.+..+..
T Consensus 497 ~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~ 576 (708)
T KOG0348|consen 497 RRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEI 576 (708)
T ss_pred cceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888777
Q ss_pred HHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHHHH
Q psy15524 790 CLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFA 869 (930)
Q Consensus 790 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~~a 869 (930)
++..+.-... +....++++++..+|..++.++..++.+..+|.+||+||+|+|++|+.+++.||+++.||+||+|
T Consensus 577 ~l~~~~~~~~-----k~~~~e~~~~at~~q~~~e~~~~~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlGH~A 651 (708)
T KOG0348|consen 577 LLPAFKPRKD-----KAKTKEWQERATTLQLNLERLVVGDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLGHVA 651 (708)
T ss_pred hhhhcCcccc-----cccchhhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhhHHH
Confidence 7665541111 11234788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCccccc
Q psy15524 870 KSFALRDAPSVISG 883 (930)
Q Consensus 870 ~sf~l~~~p~~~~~ 883 (930)
+||||++.|..+.+
T Consensus 652 KSFaLReaP~k~~g 665 (708)
T KOG0348|consen 652 KSFALREAPGKLSG 665 (708)
T ss_pred HhhHhhhcchhhhc
Confidence 99999999966553
No 2
>KOG0345|consensus
Probab=100.00 E-value=1.4e-84 Score=670.97 Aligned_cols=448 Identities=35% Similarity=0.587 Sum_probs=400.2
Q ss_pred CCCCCCC-CCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 389 PTSYEEF-PGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 389 ~~~f~~l-~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
+.+|+++ ++|+|++++++.+ +||..|||+|..+||.++.++||+|.|+||||||+||++|+++.+++...+.+ ....
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-~~~v 80 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-PGQV 80 (567)
T ss_pred CcchhhcCCCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-ccce
Confidence 3578888 3577999999985 89999999999999999999999999999999999999999999976544332 2246
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhc-cCCcccccceE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKH-TETLKFSKVEH 545 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~-~~~~~~~~l~~ 545 (930)
.+|||+||||||.|+.+++..+...+..+.+.+++||.+.......+. ++++|+|||||||.+++.+ ...++++++++
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 899999999999999999999999888888999999988877776664 6799999999999999988 44566889999
Q ss_pred EEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCc
Q psy15524 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625 (930)
Q Consensus 546 lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 625 (930)
+|+||||+++|+||+..+..|++.||+ ++++-+||||.+..+.++....++||+.+.+..... ...|+.+
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LPK---QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~-------~~tPS~L 230 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLPK---QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSK-------SATPSSL 230 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhccc---ccccccccchhhHHHHHHHHhhccCceeeeeccccc-------ccCchhh
Confidence 999999999999999999999999987 899999999999999999999999999998876542 2378899
Q ss_pred eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHH
Q psy15524 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKT 705 (930)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~ 705 (930)
...|..|++..|+..+..+|... ..+++|||++||.++++++.++..+++ ...++.+||.|++..|..++++
T Consensus 231 ~~~Y~v~~a~eK~~~lv~~L~~~-------~~kK~iVFF~TCasVeYf~~~~~~~l~-~~~i~~iHGK~~q~~R~k~~~~ 302 (567)
T KOG0345|consen 231 ALEYLVCEADEKLSQLVHLLNNN-------KDKKCIVFFPTCASVEYFGKLFSRLLK-KREIFSIHGKMSQKARAKVLEA 302 (567)
T ss_pred cceeeEecHHHHHHHHHHHHhcc-------ccccEEEEecCcchHHHHHHHHHHHhC-CCcEEEecchhcchhHHHHHHH
Confidence 99999999999999999999763 267999999999999999999998854 6889999999999999999999
Q ss_pred hhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCC-ccch
Q psy15524 706 FRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRI-RIEE 784 (930)
Q Consensus 706 F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~-~~~~ 784 (930)
|++....+|+|||+++||+|||+|+||||||+|.+++.|+||+|||||+|+.|.+++|+.|+|.+|++.|..++. .+++
T Consensus 303 F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 303 FRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred HHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhh
Confidence 999888999999999999999999999999999999999999999999999999999999999999999998864 4443
Q ss_pred hchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCC
Q psy15524 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIH 864 (930)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~ 864 (930)
...+. +...+-..+++++.+|+++++.+.+||+||+|+|+.| .+..||+++.||
T Consensus 383 ~~~e~------------------------~~~~~~~~ir~~~~~DR~~~dkG~kAFVS~VraY~~H--~cs~Ifr~kdLd 436 (567)
T KOG0345|consen 383 IDTEK------------------------ASLSVYQDIRSIISKDRAVLDKGLKAFVSHVRAYKKH--HCSYIFRLKDLD 436 (567)
T ss_pred hcccc------------------------cchhHHHHHHHHhcccHHHHhhhHHHHHHHHHHHhhc--ceeEEEeecCCc
Confidence 32211 1112455778899999999999999999999999999 589999999999
Q ss_pred hHHHHHhcCCCCCCcccc
Q psy15524 865 LGHFAKSFALRDAPSVIS 882 (930)
Q Consensus 865 ~~~~a~sf~l~~~p~~~~ 882 (930)
++.+|.+|||...|++.+
T Consensus 437 ~~~lA~~YgLl~lP~M~E 454 (567)
T KOG0345|consen 437 LGKLATLYGLLRLPKMPE 454 (567)
T ss_pred HHHHHHHHHHHhCCCcHH
Confidence 999999999999999765
No 3
>KOG0342|consensus
Probab=100.00 E-value=2.2e-83 Score=667.78 Aligned_cols=450 Identities=38% Similarity=0.636 Sum_probs=411.6
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCC
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~ 465 (930)
......|+++ .|++...+++. .|||..||++|+.+||.++.|+|+++.|.||||||+||++|+++.+...+.+ ...
T Consensus 78 ~~~~~~f~~~-~LS~~t~kAi~-~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~--~r~ 153 (543)
T KOG0342|consen 78 ITTTFRFEEG-SLSPLTLKAIK-EMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK--PRN 153 (543)
T ss_pred hhhhhHhhcc-ccCHHHHHHHH-hcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC--CCC
Confidence 4445678888 89999999998 4999999999999999999999999999999999999999999999876544 347
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceE
Q psy15524 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 545 (930)
Q Consensus 466 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~ 545 (930)
+..++||+||||||.|++.+++++........++.+.||.+...+..++.++++|+|+|||||++|+.++..+.++++++
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 89999999999999999999999998876778899999999999999999999999999999999999999988999999
Q ss_pred EEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcC-CCEEEEccCCCCcccCccceecCCC
Q psy15524 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDS 624 (930)
Q Consensus 546 lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 624 (930)
+|+||||+++++||++.+.+|+..+++ .+|+++||||.++.|++++...+. +|+++++.+... ....+.
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk---~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~-------~~The~ 303 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPK---QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE-------RETHER 303 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccc---cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC-------cchhhc
Confidence 999999999999999999999999985 899999999999999999998877 489998876543 234578
Q ss_pred ceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHH
Q psy15524 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704 (930)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~ 704 (930)
+.|.|++++...++..+..+|+++.. ..++||||+||..+.+++++|+.+ ++++..+||+++|..|..++.
T Consensus 304 l~Qgyvv~~~~~~f~ll~~~LKk~~~------~~KiiVF~sT~~~vk~~~~lL~~~---dlpv~eiHgk~~Q~kRT~~~~ 374 (543)
T KOG0342|consen 304 LEQGYVVAPSDSRFSLLYTFLKKNIK------RYKIIVFFSTCMSVKFHAELLNYI---DLPVLEIHGKQKQNKRTSTFF 374 (543)
T ss_pred ccceEEeccccchHHHHHHHHHHhcC------CceEEEEechhhHHHHHHHHHhhc---CCchhhhhcCCcccccchHHH
Confidence 99999999999999999999987643 489999999999999999999976 889999999999999999999
Q ss_pred HhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCCccch
Q psy15524 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEE 784 (930)
Q Consensus 705 ~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~~~~~ 784 (930)
.|++.+..|||||||+|||+|+|+|+||||||+|.++++|+||+|||||.|+.|.+++|+.|+|..|+++|+ .+|+++
T Consensus 375 ~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK--~lpl~~ 452 (543)
T KOG0342|consen 375 EFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK--KLPLEE 452 (543)
T ss_pred HHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh--hCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 677777
Q ss_pred hchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCC
Q psy15524 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIH 864 (930)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~ 864 (930)
.++... ..+.+|...++++.++..+.+.|..||.||+++|.+|+ ++.+|++..++
T Consensus 453 ~e~~~~-----------------------~~~~v~~~~~~li~~~y~~~~aak~ay~syl~~y~s~s--lk~~~~~~~l~ 507 (543)
T KOG0342|consen 453 FEFPPL-----------------------KPEDVQSQLEKLISKNYSLKEAAKEAYKSYLGAYNSHS--LKDIFNVNLLE 507 (543)
T ss_pred cCCCCC-----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccchh--hhcccccchhh
Confidence 655321 12467888899999999999999999999999999994 99999999999
Q ss_pred hHHHHHhcCCCCCCcccccCC
Q psy15524 865 LGHFAKSFALRDAPSVISGIG 885 (930)
Q Consensus 865 ~~~~a~sf~l~~~p~~~~~~~ 885 (930)
|..+|+|||+..||.+.-..+
T Consensus 508 La~~~~s~gf~~pp~v~~~i~ 528 (543)
T KOG0342|consen 508 LAAVAKSFGFSVPPAVDLKID 528 (543)
T ss_pred HHHHHHHcCCCCCccceeecc
Confidence 999999999999999876553
No 4
>KOG0343|consensus
Probab=100.00 E-value=6.7e-82 Score=660.65 Aligned_cols=448 Identities=36% Similarity=0.598 Sum_probs=411.9
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
...|++| .|+..+.++|.+ -+|..||.+|+++||..++|+|++..|.|||||||||++|++++|++ .+|+..+|..
T Consensus 68 ~~kF~dl-pls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r--~kWs~~DGlG 143 (758)
T KOG0343|consen 68 IKKFADL-PLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYR--LKWSPTDGLG 143 (758)
T ss_pred hhhHHhC-CCchHHHHhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHH--cCCCCCCCce
Confidence 3579999 899999999986 69999999999999999999999999999999999999999999986 5688899999
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
||||+||||||.|+++++.+.+.. ..+.+++++||.+...+..++. +++|+|||||||++|+..+..++..++.++|+
T Consensus 144 alIISPTRELA~QtFevL~kvgk~-h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKH-HDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhc-cccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 999999999999999999999875 4578899999999888887775 69999999999999999999999999999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||+++||||...+..|++.++. .+|+++||||.+..+.++++..+.||.+|.+.... ....|..+.|.
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP~---~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a-------~~atP~~L~Q~ 291 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLPK---KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA-------VAATPSNLQQS 291 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCCh---hheeeeeecccchhHHHHHHhhcCCCcEEEEeccc-------cccChhhhhhe
Confidence 999999999999999999999986 89999999999999999999999999999987432 24678999999
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|+.++...|+..|..++..+. ..++|||++||+++.++++.|+++ .+|++++.+||+|+|..|.+++..|..
T Consensus 292 y~~v~l~~Ki~~L~sFI~shl-------k~K~iVF~SscKqvkf~~e~F~rl-rpg~~l~~L~G~~~Q~~R~ev~~~F~~ 363 (758)
T KOG0343|consen 292 YVIVPLEDKIDMLWSFIKSHL-------KKKSIVFLSSCKQVKFLYEAFCRL-RPGIPLLALHGTMSQKKRIEVYKKFVR 363 (758)
T ss_pred EEEEehhhHHHHHHHHHHhcc-------ccceEEEEehhhHHHHHHHHHHhc-CCCCceeeeccchhHHHHHHHHHHHHH
Confidence 999999999999999998764 679999999999999999999986 459999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHHHHhcCCccchhch
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEELQNRRIRIEEIKL 787 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~l~~~~~~~~~~~~ 787 (930)
.+..||+|||+++||+|||+|+||||+|+|.++++|+||+||++|.+..|.|+++++|+| ..++..|++++|++++..+
T Consensus 364 ~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i 443 (758)
T KOG0343|consen 364 KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPIKEIKI 443 (758)
T ss_pred hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999 6689999999999887765
Q ss_pred HHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHH
Q psy15524 788 KDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGH 867 (930)
Q Consensus 788 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~ 867 (930)
++ +....++..++.++.++++|.+.|++||+||+|+.... ..+.+|++..+++..
T Consensus 444 ~~-----------------------~k~~~i~~~l~~ll~~~~eLk~~aqka~isY~rsi~~~--rdK~~f~~~~l~~~a 498 (758)
T KOG0343|consen 444 DP-----------------------EKLTSIRNKLEALLAKDPELKEYAQKAFISYLRSIYLM--RDKRVFDVEKLDIEA 498 (758)
T ss_pred CH-----------------------HHhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhh--ccchhhcchhccHHH
Confidence 42 12345788889999999999999999999999976554 368999999999999
Q ss_pred HHHhcCCCCCCcccccCC
Q psy15524 868 FAKSFALRDAPSVISGIG 885 (930)
Q Consensus 868 ~a~sf~l~~~p~~~~~~~ 885 (930)
+|.||||...|+.+....
T Consensus 499 fa~s~Gl~~~p~~~~~l~ 516 (758)
T KOG0343|consen 499 FADSLGLPGTPRIVRFLN 516 (758)
T ss_pred HHHhcCCCCCchhccchh
Confidence 999999999999766543
No 5
>KOG0330|consensus
Probab=100.00 E-value=2.9e-71 Score=559.68 Aligned_cols=358 Identities=36% Similarity=0.596 Sum_probs=333.6
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
..+|.++ +++|.+++++++ .|++.||+||+++||.++.|+|+|..|.||||||.+|++|++++|+.. ....+
T Consensus 60 ~~sf~dL-gv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~------p~~~~ 131 (476)
T KOG0330|consen 60 FKSFADL-GVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE------PKLFF 131 (476)
T ss_pred hcchhhc-CcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC------CCCce
Confidence 3579999 999999999985 799999999999999999999999999999999999999999999873 33589
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++|++||||||.|+.+.+..++...+ +.+.++.||.+...+...+.+.++|+|+|||||.+|+.+++.++++.++++|+
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~ig-lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIG-LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccC-eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 99999999999999999999988766 45677899999999999999999999999999999999999999999999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||+++++.|...+..|++.++. .+|+++||||+|..+..+....+.+|+.+.+... +.+-+.+.|.
T Consensus 211 DEADrlLd~dF~~~ld~ILk~ip~---erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k---------y~tv~~lkQ~ 278 (476)
T KOG0330|consen 211 DEADRLLDMDFEEELDYILKVIPR---ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK---------YQTVDHLKQT 278 (476)
T ss_pred chHHhhhhhhhHHHHHHHHHhcCc---cceEEEEEeecchhhHHHHhhccCCCeEEeccch---------hcchHHhhhh
Confidence 999999999999999999999874 8999999999999999999999999999887554 2344678999
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|..++.+.|...|..++.... +..+||||+||..+++++-+|..+ |+....+||.|++..|...++.|++
T Consensus 279 ylfv~~k~K~~yLV~ll~e~~-------g~s~iVF~~t~~tt~~la~~L~~l---g~~a~~LhGqmsq~~Rlg~l~~Fk~ 348 (476)
T KOG0330|consen 279 YLFVPGKDKDTYLVYLLNELA-------GNSVIVFCNTCNTTRFLALLLRNL---GFQAIPLHGQMSQSKRLGALNKFKA 348 (476)
T ss_pred eEeccccccchhHHHHHHhhc-------CCcEEEEEeccchHHHHHHHHHhc---CcceecccchhhHHHHHHHHHHHhc
Confidence 999999999999999887542 679999999999999999999987 8999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|..+||||||+++||+|+|.|++|||||+|.+..+|+||+||+||+|++|.++.+++..|.+.+.+++.
T Consensus 349 ~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~ 417 (476)
T KOG0330|consen 349 GARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEH 417 (476)
T ss_pred cCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888865
No 6
>KOG0331|consensus
Probab=100.00 E-value=3.3e-67 Score=569.69 Aligned_cols=367 Identities=37% Similarity=0.575 Sum_probs=332.9
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.|+++ +|++++...+.. .||+.|||||.++||.++.|+|++..|.|||||||+|++|++.++........+.+++.+|
T Consensus 92 ~f~~~-~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQEL-GLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred hhhcc-cccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 78899 899999999974 7999999999999999999999999999999999999999999998755556678899999
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
||+||||||.|+.+++.+++.... +...|++||.....+...+.++++|+|+|||||.+++.. ....++++.++|+||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDE 247 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEecc
Confidence 999999999999999999998766 567889999999999999999999999999999999987 678899999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
||+|+++||++++..|+..++. +.+|++++|||+|..+..++..++.+|..+.+..... ......+.|...
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~--~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~-------~~a~~~i~qive 318 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPR--PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKE-------LKANHNIRQIVE 318 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCC--CcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhh-------hhhhcchhhhhh
Confidence 9999999999999999999854 3559999999999999999999999999998875431 122356778888
Q ss_pred EcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy15524 631 VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVK 710 (930)
Q Consensus 631 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~ 710 (930)
.++...|...+...|.... ....+|+||||.|+..|+.+...+... ++.+..+||+.+|.+|..+++.|++|+
T Consensus 319 ~~~~~~K~~~l~~lL~~~~----~~~~~KvIIFc~tkr~~~~l~~~l~~~---~~~a~~iHGd~sQ~eR~~~L~~FreG~ 391 (519)
T KOG0331|consen 319 VCDETAKLRKLGKLLEDIS----SDSEGKVIIFCETKRTCDELARNLRRK---GWPAVAIHGDKSQSERDWVLKGFREGK 391 (519)
T ss_pred hcCHHHHHHHHHHHHHHHh----ccCCCcEEEEecchhhHHHHHHHHHhc---CcceeeecccccHHHHHHHHHhcccCC
Confidence 8888888888888888765 223789999999999999999999874 578999999999999999999999999
Q ss_pred CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 711 SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 711 ~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
..||||||+|+||||+|+|++|||||+|.+.++|+||+|||||+|+.|.++.|++..+......+.+
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877666643
No 7
>KOG0338|consensus
Probab=100.00 E-value=7.5e-66 Score=535.45 Aligned_cols=361 Identities=34% Similarity=0.546 Sum_probs=326.6
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|.++ +|+..+++++. .+||..|||||..+||..+.|+|++.+|.||||||.+|++|++++|.-... +-...++
T Consensus 181 ~sF~~m-NLSRPlLka~~-~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk---~~~~TRV 255 (691)
T KOG0338|consen 181 ESFQSM-NLSRPLLKACS-TLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK---KVAATRV 255 (691)
T ss_pred hhHHhc-ccchHHHHHHH-hcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc---cCcceeE
Confidence 479999 99999999997 699999999999999999999999999999999999999999999876322 2457899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|||+||||||.|++.+.+++... ..+.+++..||-+.+.+...++.++||+|+|||||.+|+++...++++++.++|+|
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqF-t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQF-TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhh-ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 99999999999999999998864 55888999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||||++.||...+..|+..+++ ++|++|||||++..+.++++..+++|+.|.+.+... .+..+.|.|
T Consensus 335 EADRMLeegFademnEii~lcpk---~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~---------~a~~LtQEF 402 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCPK---NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKD---------TAPKLTQEF 402 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc---cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccc---------cchhhhHHH
Confidence 99999999999999999999987 899999999999999999999999999998876543 335677777
Q ss_pred EEcCch---hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 630 IVTPPK---LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 630 ~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
+.+.+. .+-..+..++.... ...+|||+.|.+.+..+.-+|.-+ |+.+..+||+++|.+|...++.|
T Consensus 403 iRIR~~re~dRea~l~~l~~rtf-------~~~~ivFv~tKk~AHRl~IllGLl---gl~agElHGsLtQ~QRlesL~kF 472 (691)
T KOG0338|consen 403 IRIRPKREGDREAMLASLITRTF-------QDRTIVFVRTKKQAHRLRILLGLL---GLKAGELHGSLTQEQRLESLEKF 472 (691)
T ss_pred heeccccccccHHHHHHHHHHhc-------ccceEEEEehHHHHHHHHHHHHHh---hchhhhhcccccHHHHHHHHHHH
Confidence 765543 45555555555433 568999999999999998887755 78899999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
++++++||||||+++||+||++|..||||++|.+...|+||+|||+|+|+.|.++.|+..+|...++.+.+.
T Consensus 473 k~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 473 KKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998887654
No 8
>KOG0340|consensus
Probab=100.00 E-value=1.8e-63 Score=497.16 Aligned_cols=372 Identities=33% Similarity=0.552 Sum_probs=330.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 388 ~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
+...|+.| ||++|+.+.|+ .+|+..|||+|..+||.++.|+|++.+|.||||||.+|.+|+++++.. ...|.
T Consensus 5 t~~~F~~L-Gl~~Wlve~l~-~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse------dP~gi 76 (442)
T KOG0340|consen 5 TAKPFSIL-GLSPWLVEQLK-ALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE------DPYGI 76 (442)
T ss_pred ccCchhhc-CccHHHHHHHH-HhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc------CCCcc
Confidence 34679999 99999999998 499999999999999999999999999999999999999999999976 34688
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc---CCcccccce
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT---ETLKFSKVE 544 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~---~~~~~~~l~ 544 (930)
.++|++||||||.|+.+.|..+++..+ +.+..++||.+.-.+...+...++++|+||||+.+|+... -.+.+++++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~-lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLN-LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhccccc-ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 999999999999999999999887655 5678899999998898999999999999999999999886 345689999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCC
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 624 (930)
++|+||||++++..|.+.++.+.+.++. .+|+++||||+++.+..+.......+...... ..+...+++.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP~---~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e-------~~~~vstvet 225 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLPK---PRQTLLFSATITDTIKQLFGCPITKSIAFELE-------VIDGVSTVET 225 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCCC---ccceEEEEeehhhHHHHhhcCCcccccceEEe-------ccCCCCchhh
Confidence 9999999999999999999999988876 68999999999999988877666653221111 1123467789
Q ss_pred ceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHH
Q psy15524 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704 (930)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~ 704 (930)
+.|.|+.++.+.+...+...|...... +++.++||++++.+++.++..|..+ ++.+..+|+.|+|.+|...+.
T Consensus 226 L~q~yI~~~~~vkdaYLv~~Lr~~~~~----~~~simIFvnttr~cQ~l~~~l~~l---e~r~~~lHs~m~Q~eR~~aLs 298 (442)
T KOG0340|consen 226 LYQGYILVSIDVKDAYLVHLLRDFENK----ENGSIMIFVNTTRECQLLSMTLKNL---EVRVVSLHSQMPQKERLAALS 298 (442)
T ss_pred hhhheeecchhhhHHHHHHHHhhhhhc----cCceEEEEeehhHHHHHHHHHHhhh---ceeeeehhhcchHHHHHHHHH
Confidence 999999999999999999988865332 3789999999999999999999987 789999999999999999999
Q ss_pred HhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccc
Q psy15524 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIE 783 (930)
Q Consensus 705 ~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~ 783 (930)
+|+++..+||+|||+++||+|||.|++||+||+|.++.+|+||+||++|+|+.|.++.|+++.+.+.+..+++. +-.+.
T Consensus 299 rFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~ 378 (442)
T KOG0340|consen 299 RFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLT 378 (442)
T ss_pred HHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888764 33444
Q ss_pred hh
Q psy15524 784 EI 785 (930)
Q Consensus 784 ~~ 785 (930)
+.
T Consensus 379 e~ 380 (442)
T KOG0340|consen 379 EY 380 (442)
T ss_pred cc
Confidence 44
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-62 Score=561.86 Aligned_cols=362 Identities=35% Similarity=0.578 Sum_probs=325.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
..|+++ ++++.+++++.+ +||..|||||.++||.++.|+|++++|+||||||++|++|+++.+... . ......+
T Consensus 29 ~~F~~l-~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~---~~~~~~a 102 (513)
T COG0513 29 PEFASL-GLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-V---ERKYVSA 102 (513)
T ss_pred CCHhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-c---ccCCCce
Confidence 469999 899999999986 899999999999999999999999999999999999999999997642 0 1111119
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||||||.|+++.+..+......+.+.+++||.+...+...+..+++|+|+||||+++|+.+. .+.+++++++|+|
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlD 181 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLD 181 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEec
Confidence 999999999999999999998876456688899999999998889889999999999999999984 7889999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+|+++||.+.+..|+..++. ++|+++||||+|+.+..+++.++.+|..+.+.... ....+..+.|.|
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~---~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~-------~~~~~~~i~q~~ 251 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPP---DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK-------LERTLKKIKQFY 251 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCc---ccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc-------ccccccCceEEE
Confidence 99999999999999999999876 89999999999999999999999999988776322 112457789999
Q ss_pred EEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+.++... |+..|..++.... ..++||||+|+..++.++..|... |+.+..+||+|+|.+|..+++.|++
T Consensus 252 ~~v~~~~~k~~~L~~ll~~~~-------~~~~IVF~~tk~~~~~l~~~l~~~---g~~~~~lhG~l~q~~R~~~l~~F~~ 321 (513)
T COG0513 252 LEVESEEEKLELLLKLLKDED-------EGRVIVFVRTKRLVEELAESLRKR---GFKVAALHGDLPQEERDRALEKFKD 321 (513)
T ss_pred EEeCCHHHHHHHHHHHHhcCC-------CCeEEEEeCcHHHHHHHHHHHHHC---CCeEEEecCCCCHHHHHHHHHHHHc
Confidence 9999876 8888888876531 347999999999999999999885 8999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc-cHHHHHHHHhc
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQNR 778 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-e~~~~~~l~~~ 778 (930)
|+.+||||||+++||||+|+|++|||||.|.++++|+||+|||||+|..|.++.|+.+. |..++..+++.
T Consensus 322 g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 322 GELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred CCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986 78888887764
No 10
>KOG0333|consensus
Probab=100.00 E-value=2.4e-62 Score=511.60 Aligned_cols=384 Identities=30% Similarity=0.498 Sum_probs=337.9
Q ss_pred ccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCch
Q psy15524 363 SLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGK 442 (930)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGK 442 (930)
.+|...-.+...+...+.|. .+|++. ++|.++++.+. ..||..|||||.+|||..++.+|+|..|.|||||
T Consensus 225 ri~redynis~kg~~lpnpl-------rnwEE~-~~P~e~l~~I~-~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGk 295 (673)
T KOG0333|consen 225 RIFREDYNISIKGGRLPNPL-------RNWEES-GFPLELLSVIK-KPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGK 295 (673)
T ss_pred eeeecceeeeecCCCCCccc-------cChhhc-CCCHHHHHHHH-hcCCCCCchHHHhhccchhccCCeeeEEeccCCc
Confidence 34555555555555555555 369998 89999999886 5899999999999999999999999999999999
Q ss_pred hHHhhHHHHHHHHhhCcc---cCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCc
Q psy15524 443 TLAYAIPIIQKLQEMRPK---ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS 519 (930)
Q Consensus 443 Tl~~~lp~l~~l~~~~~~---~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 519 (930)
|++|++|++..+.+..+- .....|++++|++||||||+|+.++-.+++...+ +.+..+.||.+...+--.+..||+
T Consensus 296 taaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg-~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 296 TAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred cccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhccccc-ceEEEEecccchhhhhhhhhccce
Confidence 999999999988765421 1345799999999999999999999999998777 556678899988888778899999
Q ss_pred EEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCc----------------------cc
Q psy15524 520 ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP----------------------QF 577 (930)
Q Consensus 520 Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~----------------------~~ 577 (930)
|+|+|||||++.+.+ ..+.++++.++|+||||+|+|+||++++..++..++.... -+
T Consensus 375 iviatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yr 453 (673)
T KOG0333|consen 375 IVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYR 453 (673)
T ss_pred eeecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccccee
Confidence 999999999999987 5677899999999999999999999999999999985322 18
Q ss_pred eEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCC
Q psy15524 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 657 (930)
Q Consensus 578 q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 657 (930)
|+++||||+|+.+..+++.++++|+.+.+...... ...+.|.++.++.+.+...|...+.... .
T Consensus 454 qT~mftatm~p~verlar~ylr~pv~vtig~~gk~---------~~rveQ~v~m~~ed~k~kkL~eil~~~~-------~ 517 (673)
T KOG0333|consen 454 QTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKP---------TPRVEQKVEMVSEDEKRKKLIEILESNF-------D 517 (673)
T ss_pred EEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCC---------ccchheEEEEecchHHHHHHHHHHHhCC-------C
Confidence 99999999999999999999999999887654322 2457888989999999999999887652 5
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecC
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTA 737 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~ 737 (930)
.++|||+++.+.|+.+++.|.+. |+.++.|||+-+|++|+.+++.|++|..+||||||+++||||+|+|++|||||+
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~---g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKA---GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhc---cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch
Confidence 79999999999999999999986 899999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 738 PSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 738 p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
+.++++|+||||||||+|+.|.++.|+++.+...+..|.
T Consensus 595 aksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLk 633 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLK 633 (673)
T ss_pred hhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHH
Confidence 999999999999999999999999999999977555554
No 11
>KOG0328|consensus
Probab=100.00 E-value=5.1e-61 Score=464.28 Aligned_cols=370 Identities=28% Similarity=0.504 Sum_probs=326.6
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCC
Q psy15524 385 ALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK 464 (930)
Q Consensus 385 ~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~ 464 (930)
.+....+|++. +|.+++++++.. +||+.|+.+|++|||++++|+|++++|+.|+|||.+|.+.+++.+.- ..
T Consensus 22 ~~~v~~~F~~M-gl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~ 93 (400)
T KOG0328|consen 22 KVKVIPTFDDM-GLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SV 93 (400)
T ss_pred Ccccccchhhc-CchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------cc
Confidence 33444689999 999999999984 89999999999999999999999999999999999999999987653 23
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccce
Q psy15524 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVE 544 (930)
Q Consensus 465 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~ 544 (930)
....++|++||||||.|+.+++..++...+. .+....||.+.....+.+..|.+++.+||||+++++++ ..+..+.++
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnv-q~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vk 171 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNV-QCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVK 171 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccc-eEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-cccccccee
Confidence 4578999999999999999999999887664 45566788888888888889999999999999999987 667789999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCC
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 624 (930)
++|+||||.+++.||..++..|.+.++ +..|++++|||+|.++.++...++.+|+.+-+..... ..+.
T Consensus 172 mlVLDEaDemL~kgfk~Qiydiyr~lp---~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdel---------tlEg 239 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGFKEQIYDIYRYLP---PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDEL---------TLEG 239 (400)
T ss_pred EEEeccHHHHHHhhHHHHHHHHHHhCC---CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCC---------chhh
Confidence 999999999999999999999988886 4899999999999999999999999999987754431 2256
Q ss_pred ceEEEEEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHH
Q psy15524 625 LKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 625 ~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~ 703 (930)
++|+|+.+..+. |+..|.++-.... -.+++|||+|+..++++.+.+.+. ++.+..+||+|.+++|..++
T Consensus 240 IKqf~v~ve~EewKfdtLcdLYd~Lt-------ItQavIFcnTk~kVdwLtekm~~~---nftVssmHGDm~qkERd~im 309 (400)
T KOG0328|consen 240 IKQFFVAVEKEEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREA---NFTVSSMHGDMEQKERDKIM 309 (400)
T ss_pred hhhheeeechhhhhHhHHHHHhhhhe-------hheEEEEecccchhhHHHHHHHhh---CceeeeccCCcchhHHHHHH
Confidence 889998887766 8888887654432 458999999999999999999875 78899999999999999999
Q ss_pred HHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCcc
Q psy15524 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRI 782 (930)
Q Consensus 704 ~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~ 782 (930)
.+|++|+.+||+|||+-+||+|+|.|++||+||.|.+.+.|+||+||.||.|+.|.++-|+..++...++.+++. +..+
T Consensus 310 ~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i 389 (400)
T KOG0328|consen 310 NDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQI 389 (400)
T ss_pred HHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988888763 4444
Q ss_pred chhc
Q psy15524 783 EEIK 786 (930)
Q Consensus 783 ~~~~ 786 (930)
.++.
T Consensus 390 ~emp 393 (400)
T KOG0328|consen 390 DEMP 393 (400)
T ss_pred cccc
Confidence 4444
No 12
>KOG0336|consensus
Probab=100.00 E-value=4e-60 Score=479.52 Aligned_cols=363 Identities=31% Similarity=0.512 Sum_probs=317.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|++-..-.|++.+.+.+ .||.+|||||++|+|.+|+|.|++..|+||+|||++|++|-+.++...........++++
T Consensus 219 ctFddAFq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~ 297 (629)
T KOG0336|consen 219 CTFDDAFQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGV 297 (629)
T ss_pred CcHHHHHhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCce
Confidence 4677654788999999985 899999999999999999999999999999999999999998877654444445678999
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|+++||||||.|+.-.+.+.. +...+..+++||.++..+...+.++.+|+++|||||.++... ..+++.++.|+|+|
T Consensus 298 lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlVlD 374 (629)
T KOG0336|consen 298 LVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLVLD 374 (629)
T ss_pred EEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEEec
Confidence 999999999999988877654 456788899999999999999999999999999999988765 67889999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+|+||||+..+..|+--+ .|++|+++.|||+|+.+.+++..++++|+.+-+.... +..-..++|.+
T Consensus 375 EADrMLDMgFEpqIrkilldi---RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd--------L~a~~sVkQ~i 443 (629)
T KOG0336|consen 375 EADRMLDMGFEPQIRKILLDI---RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD--------LVAVKSVKQNI 443 (629)
T ss_pred chhhhhcccccHHHHHHhhhc---CCcceeeeecccCchHHHHHHHHhhhCceEEEecccc--------eeeeeeeeeeE
Confidence 999999999999988876444 4699999999999999999999999999887765442 22335678888
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
++.....++.....++.... ...|+||||+....++.+..-|.- .|+..-.+||+-+|.+|+..++.|++|
T Consensus 444 ~v~~d~~k~~~~~~f~~~ms------~ndKvIiFv~~K~~AD~LSSd~~l---~gi~~q~lHG~r~Q~DrE~al~~~ksG 514 (629)
T KOG0336|consen 444 IVTTDSEKLEIVQFFVANMS------SNDKVIIFVSRKVMADHLSSDFCL---KGISSQSLHGNREQSDREMALEDFKSG 514 (629)
T ss_pred EecccHHHHHHHHHHHHhcC------CCceEEEEEechhhhhhccchhhh---cccchhhccCChhhhhHHHHHHhhhcC
Confidence 77777777766666665432 267999999999999888776653 488888999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
+.+||||||+++||+|+|++++|++||.|.++++|+||+||+||+|+.|.++.|++.++....+.|.
T Consensus 515 ~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 515 EVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred ceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777664
No 13
>KOG0346|consensus
Probab=100.00 E-value=1.1e-58 Score=474.48 Aligned_cols=364 Identities=30% Similarity=0.446 Sum_probs=320.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|++| +|++.+++++.+ .||..||-||+.|||.+++|+|+++.|.||||||.+|++|+++.+...+.......|+.+
T Consensus 19 ktFe~~-gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEF-GLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSA 96 (569)
T ss_pred ccHHHh-CCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccccee
Confidence 589999 999999999985 899999999999999999999999999999999999999999999876544445678999
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCC-CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFT-WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+|++||||||+|++.++.++..... .+.+.-+....+.......+...++|+|+||++++.++.......++.++++|+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 9999999999999999999876554 222222333333334446677889999999999999998755567899999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||.++..||++.+..+.+.+|. ..|.+++|||+++++..+-+..+.||+.+....... ..|+.+.|+
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr---~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el--------~~~dqL~Qy 245 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPR---IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGEL--------PNPDQLTQY 245 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCc---hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccC--------CCcccceEE
Confidence 999999999999999999999985 889999999999999999999999999988765432 256889999
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
++.|...+|+..+..+++...- .+++|||++|.+.+-.+.-.|.++ |+..+.++|.|+..-|..++++|..
T Consensus 246 ~v~cse~DKflllyallKL~LI------~gKsliFVNtIdr~YrLkLfLeqF---GiksciLNseLP~NSR~Hii~QFNk 316 (569)
T KOG0346|consen 246 QVKCSEEDKFLLLYALLKLRLI------RGKSLIFVNTIDRCYRLKLFLEQF---GIKSCILNSELPANSRCHIIEQFNK 316 (569)
T ss_pred EEEeccchhHHHHHHHHHHHHh------cCceEEEEechhhhHHHHHHHHHh---CcHhhhhcccccccchhhHHHHhhC
Confidence 9999999999999988876443 689999999999998888778776 8899999999999999999999999
Q ss_pred CCCcEEEeccc-----------------------------------cccccCCCCccEEEEecCCCChhhHHhhhccccc
Q psy15524 709 VKSGVLICTDV-----------------------------------AARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR 753 (930)
Q Consensus 709 ~~~~vLv~T~~-----------------------------------~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR 753 (930)
|-.+++||||. ++|||||.+|..||+||+|.+...|+||+|||||
T Consensus 317 G~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaR 396 (569)
T KOG0346|consen 317 GLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTAR 396 (569)
T ss_pred cceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccccc
Confidence 99999999991 5899999999999999999999999999999999
Q ss_pred CCCCceEEEEeCcccHHHHHHH
Q psy15524 754 VGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 754 ~g~~g~~~~~~~~~e~~~~~~l 775 (930)
++++|.++.|+.|.|..-...+
T Consensus 397 g~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 397 GNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred CCCCCceEEEecchHHhhhhHH
Confidence 9999999999999988633333
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-57 Score=517.72 Aligned_cols=366 Identities=27% Similarity=0.427 Sum_probs=316.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCccc-CCCCC
Q psy15524 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDG 466 (930)
Q Consensus 388 ~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~-~~~~~ 466 (930)
+..+|+++ +|++.++++|.+ +||..|||+|+++||.+++|+|++++||||||||++|++|+++.+....... ....+
T Consensus 6 ~~~~f~~~-~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 6 TEQKFSDF-ALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred CCCCHhhC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 45689999 999999999985 8999999999999999999999999999999999999999999987543211 12346
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
+++|||+||||||.|+++.+..+....+ +.+..++||.....+...+..+++|+|+|||+|.+++.. ..+.+++++++
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~l 161 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATG-LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVV 161 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEE
Confidence 8999999999999999999999887655 456777888888877778888899999999999999876 56778999999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
|+||||+++++||...+..++..++.. ..++.+++|||++..+..+....+.+|..+.+..... ....+.
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~-~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~---------~~~~i~ 231 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPA-NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK---------TGHRIK 231 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCc-cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc---------CCCcee
Confidence 999999999999999999888887642 2567899999999999999988999998887643321 123455
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
+.+.......+...+..++... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..++++|
T Consensus 232 ~~~~~~~~~~k~~~l~~ll~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~---g~~v~~lhg~~~~~~R~~~l~~F 301 (423)
T PRK04837 232 EELFYPSNEEKMRLLQTLIEEE-------WPDRAIIFANTKHRCEEIWGHLAAD---GHRVGLLTGDVAQKKRLRILEEF 301 (423)
T ss_pred EEEEeCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHhC---CCcEEEecCCCChhHHHHHHHHH
Confidence 5666666677777777666532 1568999999999999999999874 78899999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
++|+.+||||||+++||+|+|+|++||+||+|.+..+|+||+|||||.|+.|.++.|+.+.+...+..+++
T Consensus 302 ~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~ 372 (423)
T PRK04837 302 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIET 372 (423)
T ss_pred HcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887777754
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.7e-57 Score=522.51 Aligned_cols=364 Identities=33% Similarity=0.515 Sum_probs=314.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+++.|.+ +||..|||+|.++||.+++|+|++++||||||||++|++|++.++.... ......++.+
T Consensus 130 ~~f~~~-~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~-~~~~~~gp~~ 206 (545)
T PTZ00110 130 VSFEYT-SFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQP-LLRYGDGPIV 206 (545)
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-cccCCCCcEE
Confidence 478888 899999999984 8999999999999999999999999999999999999999998876532 1223457899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|||+||||||.|+.+.+.++..... +...+++||.....+...+..+++|+|+|||+|.+++.. ....++++++||+|
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~-i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViD 284 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLD 284 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccC-ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEee
Confidence 9999999999999999999876543 456678889888888888888999999999999999976 45678999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcC-CCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
|||+++++||...+..|+..++ +.+|++++|||+|..+..++...+. +|+.+.+.... ......+.+.
T Consensus 285 EAd~mld~gf~~~i~~il~~~~---~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~--------l~~~~~i~q~ 353 (545)
T PTZ00110 285 EADRMLDMGFEPQIRKIVSQIR---PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD--------LTACHNIKQE 353 (545)
T ss_pred hHHhhhhcchHHHHHHHHHhCC---CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc--------cccCCCeeEE
Confidence 9999999999999988887764 4889999999999999999888775 57776654321 1122456677
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+..+....+...+..++..... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 354 ~~~~~~~~k~~~L~~ll~~~~~-----~~~k~LIF~~t~~~a~~l~~~L~~~---g~~~~~ihg~~~~~eR~~il~~F~~ 425 (545)
T PTZ00110 354 VFVVEEHEKRGKLKMLLQRIMR-----DGDKILIFVETKKGADFLTKELRLD---GWPALCIHGDKKQEERTWVLNEFKT 425 (545)
T ss_pred EEEEechhHHHHHHHHHHHhcc-----cCCeEEEEecChHHHHHHHHHHHHc---CCcEEEEECCCcHHHHHHHHHHHhc
Confidence 7777777788777777765432 2679999999999999999999763 7888899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+..||||||+++||||+|+|++||+||+|.++++|+||+|||||.|+.|.+++|+++++....+.|.+
T Consensus 426 G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~ 494 (545)
T PTZ00110 426 GKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVK 494 (545)
T ss_pred CCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876666543
No 16
>KOG0326|consensus
Probab=100.00 E-value=3.8e-59 Score=458.60 Aligned_cols=356 Identities=27% Similarity=0.506 Sum_probs=327.3
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
...|+++ .|.++++..+.+ +||+.|+|+|+++||.++.|+|+++.|..|+|||-+|++|+++.+.. ......
T Consensus 84 G~efEd~-~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~------~~~~IQ 155 (459)
T KOG0326|consen 84 GNEFEDY-CLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP------KKNVIQ 155 (459)
T ss_pred CccHHHh-hhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc------ccccee
Confidence 4579999 899999999986 79999999999999999999999999999999999999999998864 345778
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++|++||||||.|+.+.++.+.+..+ +.+...+||++.....-++....+++|+||||++++... +.-.++++.++|+
T Consensus 156 ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~ 233 (459)
T KOG0326|consen 156 AIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVM 233 (459)
T ss_pred EEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEe
Confidence 99999999999999999999998776 667788999999999889999999999999999999886 5567899999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||.+++..|...++.++..+++ .+|++++|||+|-.+..+....+.+|..|..-++ ..+..+.|+
T Consensus 234 DEADKlLs~~F~~~~e~li~~lP~---~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e----------Ltl~GvtQy 300 (459)
T KOG0326|consen 234 DEADKLLSVDFQPIVEKLISFLPK---ERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE----------LTLKGVTQY 300 (459)
T ss_pred chhhhhhchhhhhHHHHHHHhCCc---cceeeEEecccchhHHHHHHHhccCcceeehhhh----------hhhcchhhh
Confidence 999999999999999999999986 8899999999999999999999999999987654 245678999
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|.++.+..|...|..++.... -.+.||||+|...++.++..+.++ |+.++.+|+.|.|++|..++..|++
T Consensus 301 YafV~e~qKvhCLntLfskLq-------INQsIIFCNS~~rVELLAkKITel---GyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 301 YAFVEERQKVHCLNTLFSKLQ-------INQSIIFCNSTNRVELLAKKITEL---GYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred eeeechhhhhhhHHHHHHHhc-------ccceEEEeccchHhHHHHHHHHhc---cchhhHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999888776532 347899999999999999999987 8999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|.++.|||||.+.||+|+++|++||+||.|.+.++|+||+||+||.|..|.++.+++-+|...+..+++
T Consensus 371 G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 371 GKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred cccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887777765
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.6e-57 Score=515.46 Aligned_cols=356 Identities=32% Similarity=0.536 Sum_probs=318.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ +|++.+.++|.+ +||..|||+|++|||.+++|+|++++||||||||++|++|+++.+... ..+.++
T Consensus 4 ~~f~~l-~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~ 75 (460)
T PRK11776 4 TAFSTL-PLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQA 75 (460)
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceE
Confidence 579999 899999999974 899999999999999999999999999999999999999999988541 235689
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||+|||.|+++.++.+........+..++||.....+...+..+++|+|+|||+|.+++.+ ..+.++++++||+|
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViD 154 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLD 154 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEE
Confidence 99999999999999999998876655677788999988888888888999999999999999986 55678999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+++++||...+..++..++. .+|+++||||+++.+..++...+.+|..+.+..... ...+.+.+
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~---~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~----------~~~i~~~~ 221 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPA---RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD----------LPAIEQRF 221 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCc---ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC----------CCCeeEEE
Confidence 99999999999999988887764 789999999999999999999999998887654321 23467788
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+.++...+...+...+... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++|
T Consensus 222 ~~~~~~~k~~~l~~ll~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~---~~~v~~~hg~~~~~eR~~~l~~F~~g 291 (460)
T PRK11776 222 YEVSPDERLPALQRLLLHH-------QPESCVVFCNTKKECQEVADALNAQ---GFSALALHGDLEQRDRDQVLVRFANR 291 (460)
T ss_pred EEeCcHHHHHHHHHHHHhc-------CCCceEEEECCHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 8888888888887777532 1568999999999999999999875 78899999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+.+|||||++++||+|+|++++||+||.|.+..+|+||+|||||.|+.|.+++|+.++|...++.+..
T Consensus 292 ~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 292 SCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred CCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887777754
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.8e-56 Score=510.37 Aligned_cols=361 Identities=35% Similarity=0.547 Sum_probs=311.4
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
+|+++ +|++.+.+.|.+ +||..|||+|.++||.++.|+|++++||||||||++|++|+++.+.............++|
T Consensus 2 ~f~~l-~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 2 SFDSL-GLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CHHHc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 68999 899999999985 8999999999999999999999999999999999999999999987533221222346899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
||+||+|||.|+++.+..+..... +....++||.....+...+..+++|+|+||++|++++.. ..+.++++++||+||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDE 157 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDE 157 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCC-CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeec
Confidence 999999999999999999876544 455667888888877777888899999999999998875 456789999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
||++++++|...+..++..++. ..|+++||||+++.+..++...+.+|..+.+.... .....+.+.+.
T Consensus 158 ah~ll~~~~~~~i~~il~~l~~---~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---------~~~~~i~~~~~ 225 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKLPA---KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN---------TASEQVTQHVH 225 (456)
T ss_pred HHHHhccccHHHHHHHHHhCCc---cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc---------ccccceeEEEE
Confidence 9999999999888888777654 78999999999999999999999999877654321 12245667777
Q ss_pred EcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCC
Q psy15524 631 VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVK 710 (930)
Q Consensus 631 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~ 710 (930)
.++...+...+...+... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..++++|++|+
T Consensus 226 ~~~~~~k~~~l~~l~~~~-------~~~~~lVF~~t~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~R~~~l~~F~~g~ 295 (456)
T PRK10590 226 FVDKKRKRELLSQMIGKG-------NWQQVLVFTRTKHGANHLAEQLNKD---GIRSAAIHGNKSQGARTRALADFKSGD 295 (456)
T ss_pred EcCHHHHHHHHHHHHHcC-------CCCcEEEEcCcHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 777766666555554321 2568999999999999999999874 788899999999999999999999999
Q ss_pred CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 711 SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 711 ~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
.+|||||++++||+|+|+|++||+||+|.++.+|+||+|||||+|..|.+++|+.+.|..+++.+++
T Consensus 296 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~ 362 (456)
T PRK10590 296 IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362 (456)
T ss_pred CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888877765
No 19
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.6e-56 Score=516.25 Aligned_cols=363 Identities=29% Similarity=0.491 Sum_probs=311.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcc-cCCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~-~~~~~~~~ 468 (930)
.+|+++ ++++.+.+.|.+ +||..|||+|.++||.++.|+|++++||||||||++|++|++.++...... .....+++
T Consensus 121 ~~f~~~-~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~ 198 (518)
T PLN00206 121 LSFSSC-GLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPL 198 (518)
T ss_pred cCHHhC-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCce
Confidence 468888 899999999975 899999999999999999999999999999999999999999988653221 11235789
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+|||+||||||.|+.+.++.+....+ .....++||.....+...+..+++|+|+|||+|.+++.+ ....++++++||+
T Consensus 199 aLIL~PTreLa~Qi~~~~~~l~~~~~-~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lVi 276 (518)
T PLN00206 199 AMVLTPTRELCVQVEDQAKVLGKGLP-FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVL 276 (518)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEEe
Confidence 99999999999999999998877654 445667888887777778888999999999999999876 4677899999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||+|+++||...+..++..++ ..|++++|||+++.+..++...+.++..+....... ....+.+.
T Consensus 277 DEad~ml~~gf~~~i~~i~~~l~----~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~---------~~~~v~q~ 343 (518)
T PLN00206 277 DEVDCMLERGFRDQVMQIFQALS----QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR---------PNKAVKQL 343 (518)
T ss_pred ecHHHHhhcchHHHHHHHHHhCC----CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC---------CCcceeEE
Confidence 99999999999998888877764 679999999999999999999999998887654321 12345667
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+..+....+...+...+..... ...++||||+++..++.+++.|... .++.+..+||+|++.+|..+++.|++
T Consensus 344 ~~~~~~~~k~~~l~~~l~~~~~-----~~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 344 AIWVETKQKKQKLFDILKSKQH-----FKPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred EEeccchhHHHHHHHHHHhhcc-----cCCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 7777777777777777764321 1468999999999999999988753 26788889999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
|+.+|||||++++||+|+|+|++||+||+|.+..+|+||+|||||.|..|.+++|+.+++...+..+.
T Consensus 417 G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 417 GEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred CCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876555554
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.9e-56 Score=520.02 Aligned_cols=364 Identities=32% Similarity=0.522 Sum_probs=320.9
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ +|++.++++|.+ +||.+|||+|.++||.++.|+|++++||||||||++|++|+++.+... ..++++
T Consensus 6 ~~f~~l-~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~ 77 (629)
T PRK11634 6 TTFADL-GLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQI 77 (629)
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeE
Confidence 469999 999999999975 899999999999999999999999999999999999999999987541 346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|||+||++||.|+++.+..+...+....+..++||.+...+...+..+++|+|+|||++++++.+ ..+.++++++||||
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlD 156 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLD 156 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEec
Confidence 99999999999999999998877666667788899888888888888999999999999999976 56778999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||.+++++|...+..++..++. ..|+++||||+|+.+..+...++.+|..+.+..... ....+.+.|
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~---~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~---------~~~~i~q~~ 224 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPE---GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT---------TRPDISQSY 224 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCC---CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc---------cCCceEEEE
Confidence 99999999999999988887764 789999999999999999999999998876643321 123466778
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
..+....+...+..++... ...++||||+|+..++.+++.|... ++.+..+||+|++.+|..+++.|++|
T Consensus 225 ~~v~~~~k~~~L~~~L~~~-------~~~~~IVF~~tk~~a~~l~~~L~~~---g~~~~~lhgd~~q~~R~~il~~Fr~G 294 (629)
T PRK11634 225 WTVWGMRKNEALVRFLEAE-------DFDAAIIFVRTKNATLEVAEALERN---GYNSAALNGDMNQALREQTLERLKDG 294 (629)
T ss_pred EEechhhHHHHHHHHHHhc-------CCCCEEEEeccHHHHHHHHHHHHhC---CCCEEEeeCCCCHHHHHHHHHHHhCC
Confidence 7777778888877777532 1468999999999999999999874 78899999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccch
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEE 784 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~ 784 (930)
+.+||||||++++|||+|+|++||+||+|.+.++|+||+|||||+|+.|.+++|+.+.|..+++.+.+. +..+++
T Consensus 295 ~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~ 370 (629)
T PRK11634 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 (629)
T ss_pred CCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcce
Confidence 999999999999999999999999999999999999999999999999999999999998888888653 444433
No 21
>KOG0347|consensus
Probab=100.00 E-value=1.5e-58 Score=485.26 Aligned_cols=365 Identities=34% Similarity=0.511 Sum_probs=304.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCc-----ccCC
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRP-----KISR 463 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~-----~~~~ 463 (930)
..|.+| .+++.++.+|.+ +||..||+||..+||++..| .|++..|.|||||||||.||+++.+..... ....
T Consensus 181 sAW~~l-~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 181 SAWKNL-FLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred HHHhcC-CCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 358888 899999999984 89999999999999999999 799999999999999999999996543211 0011
Q ss_pred CCC--eeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCc--c
Q psy15524 464 KDG--IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL--K 539 (930)
Q Consensus 464 ~~~--~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~--~ 539 (930)
..+ +.+||++||||||.|+.+.+..+.. ++.+.+..++||-....+.+.+...++|+|+|||||+.++.....+ +
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 123 3599999999999999999998876 5667788899999999998889999999999999999998764432 5
Q ss_pred cccceEEEEecchhhhhcCcHHHHHHHHHHHhh--cCccceEEEEccccCHH---------------------HHHHHhh
Q psy15524 540 FSKVEHLVLDEADRILDQGYERDIAEFLEILKK--QKPQFQSILLSATLTPA---------------------VQRLAGM 596 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~--~~~~~q~vl~SAT~~~~---------------------~~~l~~~ 596 (930)
++.++++|+||||||++.|..+.+..+++.|.. ..+++|++.||||++-. ++.+...
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 889999999999999999999999999999973 45688999999998632 2233322
Q ss_pred -hc-CCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHH
Q psy15524 597 -TL-QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 674 (930)
Q Consensus 597 -~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~ 674 (930)
.+ .+|.+|+...... +.+.+....+.|++..|...|+.+|..+ .+++||||++.+.+..++
T Consensus 418 ig~~~kpkiiD~t~q~~---------ta~~l~Es~I~C~~~eKD~ylyYfl~ry--------PGrTlVF~NsId~vKRLt 480 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSA---------TASTLTESLIECPPLEKDLYLYYFLTRY--------PGRTLVFCNSIDCVKRLT 480 (731)
T ss_pred hCccCCCeeEecCcchh---------HHHHHHHHhhcCCccccceeEEEEEeec--------CCceEEEechHHHHHHHH
Confidence 22 2456666654321 2233444445556655555555555433 789999999999999999
Q ss_pred HHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 675 ELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 675 ~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
-+|+.+ ++..+.+|+.|.|.+|...+++|++...+||+|||||+||+|||+|++||||..|.+.+-|+||.|||+|+
T Consensus 481 ~~L~~L---~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA 557 (731)
T KOG0347|consen 481 VLLNNL---DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARA 557 (731)
T ss_pred HHHhhc---CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccc
Confidence 999987 88899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCcccHHHHHHHHh
Q psy15524 755 GHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 755 g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+..|.+++|+.|.|...+.+|-.
T Consensus 558 ~~~Gvsvml~~P~e~~~~~KL~k 580 (731)
T KOG0347|consen 558 NSEGVSVMLCGPQEVGPLKKLCK 580 (731)
T ss_pred cCCCeEEEEeChHHhHHHHHHHH
Confidence 99999999999999988877743
No 22
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-56 Score=515.74 Aligned_cols=365 Identities=29% Similarity=0.488 Sum_probs=315.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCccc-CCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~-~~~~~~~ 468 (930)
.+|++| +|++.+++.|.+ +||..|||+|+++||.++.|+|++++||||||||++|++|+++.+....... ....+++
T Consensus 9 ~~f~~l-~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 9 LTFSSF-DLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 469999 899999999984 8999999999999999999999999999999999999999999886532111 1123578
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+|||+||+|||.|+++.+.+++...+ +.+..++||.....+...+..+++|+|+||++|++++.....+.+..+++|||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~-i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLG-LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 99999999999999999999887654 45677899988888777788889999999999999998755677889999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++++++|...+..++..++.. ..+|+++||||+++.+..+....+.+|..+.+.... .....+.+.
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~-~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~---------~~~~~i~q~ 235 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPER-GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET---------ITAARVRQR 235 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhcccc-cCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc---------ccccceeEE
Confidence 9999999999999999988887653 267999999999999999998888888666543321 122446677
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+.......+...+..++... ...++||||+|++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 236 ~~~~~~~~k~~~L~~ll~~~-------~~~k~LVF~nt~~~ae~l~~~L~~~---g~~v~~lhg~l~~~eR~~il~~Fr~ 305 (572)
T PRK04537 236 IYFPADEEKQTLLLGLLSRS-------EGARTMVFVNTKAFVERVARTLERH---GYRVGVLSGDVPQKKRESLLNRFQK 305 (572)
T ss_pred EEecCHHHHHHHHHHHHhcc-------cCCcEEEEeCCHHHHHHHHHHHHHc---CCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 77777777777776666431 2679999999999999999999875 7889999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+.+||||||+++||||+|+|++||+||.|.+..+|+||+|||||.|..|.|++|+.+.+...+..+++
T Consensus 306 G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~ 374 (572)
T PRK04537 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374 (572)
T ss_pred CCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988887777755
No 23
>KOG0335|consensus
Probab=100.00 E-value=4.9e-57 Score=481.06 Aligned_cols=369 Identities=33% Similarity=0.465 Sum_probs=319.4
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcc----cCCCCC
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK----ISRKDG 466 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~----~~~~~~ 466 (930)
.|++- .+.+.+..++. ..++..|||+|+.+||.+..|+|++++|+||||||.+|++|++..+....+. ......
T Consensus 75 ~f~~~-~l~~~l~~ni~-~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 75 TFDEA-ILGEALAGNIK-RSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred ccccc-chhHHHhhccc-cccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 57755 78888888876 5799999999999999999999999999999999999999999999886542 222245
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
++++|++||||||.|++++.+++... .+......+||.+...+.+.+..+|+|+|+|||||.+++.. +.+.+++++++
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~-s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~ 230 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYL-SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFL 230 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhccc-ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEE
Confidence 89999999999999999999988653 45567778999999999999999999999999999999876 77889999999
Q ss_pred EEecchhhhh-cCcHHHHHHHHHHHhhc-CccceEEEEccccCHHHHHHHhhhcCC-CEEEEccCCCCcccCccceecCC
Q psy15524 547 VLDEADRILD-QGYERDIAEFLEILKKQ-KPQFQSILLSATLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPD 623 (930)
Q Consensus 547 VlDEah~l~~-~g~~~~l~~i~~~l~~~-~~~~q~vl~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 623 (930)
||||||+|+| +||++.+..|+...... ...+|+++||||.|..+..++..++.+ .+++.+.... ....
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg---------~~~~ 301 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG---------STSE 301 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec---------cccc
Confidence 9999999999 99999999999887542 347899999999999999999888886 6776665432 2346
Q ss_pred CceEEEEEcCchhhHHHHHHHHHhhccC--CCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 624 SLKQHFIVTPPKLRLVALASFILGKCQN--VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
.+.|....+....+...|...+...... .......+++|||.|.+.+.++..+|... ++.+..+||..+|.+|.+
T Consensus 302 ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 302 NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---GYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---CCCceeecchhhhhHHHH
Confidence 7889999999999999999888754322 11122348999999999999999999875 889999999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHH
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l 775 (930)
.++.|++|...+||||++++||+|+|+|++||+||+|.+..+|+||+|||||.|+.|.+..|+........+.|
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996555444444
No 24
>KOG0341|consensus
Probab=100.00 E-value=2.8e-58 Score=463.00 Aligned_cols=353 Identities=30% Similarity=0.510 Sum_probs=312.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhC--cccCCCCCe
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR--PKISRKDGI 467 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~--~~~~~~~~~ 467 (930)
.+|.+. .+|..+++.|.+ .|+.+|||||.+.+|.+++|+|.|..|-||||||++|.+|++-..+... -...++.|+
T Consensus 170 ksF~eM-KFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 170 KSFKEM-KFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred hhhhhc-cCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 468888 889999999986 7999999999999999999999999999999999999999987665443 345678899
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhcc-----CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCccccc
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKS-----FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSK 542 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~-----~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~ 542 (930)
..|||||+||||.|+++.+..+... ++.+...+..||....++...++.|.+|+|+|||||.+++.. +..+++-
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~ 326 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDA 326 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHH
Confidence 9999999999999999998877653 344566778899999999999999999999999999999987 5678899
Q ss_pred ceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecC
Q psy15524 543 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622 (930)
Q Consensus 543 l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 622 (930)
++++.+||||||.|+||+.++..|...++. ++|+++||||+|..++.+++..+..|+.+++.......
T Consensus 327 CRyL~lDEADRmiDmGFEddir~iF~~FK~---QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAs--------- 394 (610)
T KOG0341|consen 327 CRYLTLDEADRMIDMGFEDDIRTIFSFFKG---QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAAS--------- 394 (610)
T ss_pred HHHhhhhhHHHHhhccchhhHHHHHHHHhh---hhheeeeeccccHHHHHHHHhhcccceEEecccccccc---------
Confidence 999999999999999999999999999875 89999999999999999999999999999987653221
Q ss_pred CCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH
Q psy15524 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702 (930)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v 702 (930)
-.+.|....+..+.|...+.+.|... ..+++|||.....++.++++|-- +|+.+..+||+-+|++|...
T Consensus 395 ldViQevEyVkqEaKiVylLeCLQKT--------~PpVLIFaEkK~DVD~IhEYLLl---KGVEavaIHGGKDQedR~~a 463 (610)
T KOG0341|consen 395 LDVIQEVEYVKQEAKIVYLLECLQKT--------SPPVLIFAEKKADVDDIHEYLLL---KGVEAVAIHGGKDQEDRHYA 463 (610)
T ss_pred hhHHHHHHHHHhhhhhhhHHHHhccC--------CCceEEEeccccChHHHHHHHHH---ccceeEEeecCcchhHHHHH
Confidence 12334444566677777777777542 67999999999999999988753 49999999999999999999
Q ss_pred HHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 703 ~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
+++|+.|+.+||||||+++.|+|||++.+||+||+|.+++.|+||+|||||.|+.|.+..|+....
T Consensus 464 i~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 464 IEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999998753
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5e-54 Score=490.21 Aligned_cols=359 Identities=31% Similarity=0.496 Sum_probs=308.1
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
+|+++ ++++.+++.|.+ +||..||++|.++||.+++|+|++++||||+|||++|++|+++.+..... ....+.++|
T Consensus 2 ~f~~l-~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~--~~~~~~~~l 77 (434)
T PRK11192 2 TFSEL-ELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR--RKSGPPRIL 77 (434)
T ss_pred CHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCceEE
Confidence 69999 999999999985 89999999999999999999999999999999999999999999875321 123457899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||+|||.|+++.+..+....+ ..+..++||.....+...+..+++|+|+|||+|++++.. ..+.++++++||+||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDE 155 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDE 155 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCC-cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEEC
Confidence 999999999999999999887655 456778899888777777778899999999999999876 566789999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH-HHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP-AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
||+++++||...+..+...++. ..|+++||||++. .+..+....+.+|..+....... ....+.+.+
T Consensus 156 ah~~l~~~~~~~~~~i~~~~~~---~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~i~~~~ 223 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAETRW---RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR---------ERKKIHQWY 223 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhCcc---ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc---------cccCceEEE
Confidence 9999999999999888776653 6799999999985 58888888888998877644321 123455666
Q ss_pred EEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..+.. ..+...+..++... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 224 ~~~~~~~~k~~~l~~l~~~~-------~~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~g~~~~~~R~~~l~~f~~ 293 (434)
T PRK11192 224 YRADDLEHKTALLCHLLKQP-------EVTRSIVFVRTRERVHELAGWLRKA---GINCCYLEGEMVQAKRNEAIKRLTD 293 (434)
T ss_pred EEeCCHHHHHHHHHHHHhcC-------CCCeEEEEeCChHHHHHHHHHHHhC---CCCEEEecCCCCHHHHHHHHHHHhC
Confidence 55553 45555555554321 2579999999999999999999874 7889999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+.+||||||+++||+|+|++++||+||+|.+...|+||+|||||+|..|.+++|+..+|..++..+..
T Consensus 294 G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 294 GRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred CCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888887764
No 26
>KOG0339|consensus
Probab=100.00 E-value=4.7e-54 Score=446.62 Aligned_cols=361 Identities=31% Similarity=0.516 Sum_probs=319.5
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
++|+++ +++..+..++.+ -.|.+|||+|-+++|..+.|+|++..|.||||||-+|+.|++-++... +...++.|+..
T Consensus 223 tsfeh~-gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq-~eL~~g~gPi~ 299 (731)
T KOG0339|consen 223 TSFEHF-GFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQ-PELKPGEGPIG 299 (731)
T ss_pred chhhhc-CchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcch-hhhcCCCCCeE
Confidence 578999 999999999974 699999999999999999999999999999999999999999998763 34456789999
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||||||.|++.+++++++.++. .+.+++||.....+...+..++.|||||||||++++.. +..++.++.+||||
T Consensus 300 vilvPTrela~Qi~~eaKkf~K~ygl-~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~D 377 (731)
T KOG0339|consen 300 VILVPTRELASQIFSEAKKFGKAYGL-RVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLD 377 (731)
T ss_pred EEEeccHHHHHHHHHHHHHhhhhccc-eEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEEe
Confidence 99999999999999999999887764 45667888888888888999999999999999999986 67789999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+|.++||+..+..|...++ +++|+++||||++..++.+++..+.+|+.+........ .+.+.|.+
T Consensus 378 EadrmfdmGfe~qVrSI~~hir---pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgea---------n~dITQ~V 445 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIR---PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEA---------NEDITQTV 445 (731)
T ss_pred chhhhhccccHHHHHHHHhhcC---CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhcc---------ccchhhee
Confidence 9999999999999999988876 59999999999999999999999999998766533211 14466776
Q ss_pred EEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
.+++. ..|+..|...|..... .+++|+|+.....++.+...|.- +++.+..+||+|.|.+|.+++..|+.
T Consensus 446 ~V~~s~~~Kl~wl~~~L~~f~S------~gkvlifVTKk~~~e~i~a~Lkl---k~~~v~llhgdkdqa~rn~~ls~fKk 516 (731)
T KOG0339|consen 446 SVCPSEEKKLNWLLRHLVEFSS------EGKVLIFVTKKADAEEIAANLKL---KGFNVSLLHGDKDQAERNEVLSKFKK 516 (731)
T ss_pred eeccCcHHHHHHHHHHhhhhcc------CCcEEEEEeccCCHHHHHHHhcc---ccceeeeecCchhhHHHHHHHHHHhh
Confidence 66655 5677777777665432 67999999999999999888865 48999999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
+...|||+||+++||+|+|.+..||+||.-.+++.|.||+||+||+|..|.++.++++++..+.-.|-
T Consensus 517 k~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LV 584 (731)
T KOG0339|consen 517 KRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLV 584 (731)
T ss_pred cCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987655543
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.2e-53 Score=484.40 Aligned_cols=365 Identities=30% Similarity=0.450 Sum_probs=308.3
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccC-CCCCe
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKIS-RKDGI 467 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~-~~~~~ 467 (930)
..+|.++ +|++.+.++|.+ +||..||++|.++|+.+++|+|+++.||||||||++|++|+++.+........ ...+.
T Consensus 86 ~~~f~~~-~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 86 KTRFHDF-NLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred CCCHhHC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3578888 899999999985 89999999999999999999999999999999999999999999876422111 11257
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
++|||+||+|||.|+++.++.+....+ .....++||.+...+...+. ..++|+|+||++|+++..+ ....++++++|
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~l 241 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTG-LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVM 241 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCC-CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceE
Confidence 899999999999999999999887654 44566778877666665554 4689999999999998876 34568999999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
||||||++++++|...+..++..++.. ...|++++|||++..+..++..++.+|..+.+..... ....+.
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~ 311 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRK-EERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV---------ASDTVE 311 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCC-CCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC---------CCCccc
Confidence 999999999999999898888877542 3579999999999999999999999998876644321 123345
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
+.+..+....+...+..++... ...++||||++++.++.+++.|... ++.+..+||++++++|.++++.|
T Consensus 312 ~~~~~~~~~~k~~~l~~ll~~~-------~~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~R~~~~~~F 381 (475)
T PRK01297 312 QHVYAVAGSDKYKLLYNLVTQN-------PWERVMVFANRKDEVRRIEERLVKD---GINAAQLSGDVPQHKRIKTLEGF 381 (475)
T ss_pred EEEEEecchhHHHHHHHHHHhc-------CCCeEEEEeCCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHHHHH
Confidence 6666666667776666666431 1469999999999999999999764 77888999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.+++|+.++|..++..+++
T Consensus 382 r~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~ 452 (475)
T PRK01297 382 REGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEE 452 (475)
T ss_pred hCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988777777654
No 28
>KOG0350|consensus
Probab=100.00 E-value=3.8e-53 Score=440.68 Aligned_cols=354 Identities=33% Similarity=0.546 Sum_probs=302.0
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhc---------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILD---------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~---------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
..+. .|+++...|+|..++|.++. ++|+.|.||||||||+||.+||++.+.... -+..+||||+|
T Consensus 150 q~l~-k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavVivP 223 (620)
T KOG0350|consen 150 QLLV-KMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVVIVP 223 (620)
T ss_pred HHHH-HhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEEEee
Confidence 3355 48999999999999999863 589999999999999999999999987632 24589999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcC-----CcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-----ISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-----~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|++|+.|++++|..+....+.. ++.+.|..+...+...+.+. .||+|+|||||.+|+.+++.+.+++++++|||
T Consensus 224 tr~L~~QV~~~f~~~~~~tgL~-V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 224 TRELALQVYDTFKRLNSGTGLA-VCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred HHHHHHHHHHHHHHhccCCceE-EEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 9999999999999998876544 66778888888887777643 48999999999999999999999999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhc-------------------------------CccceEEEEccccCHHHHHHHhhhc
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQ-------------------------------KPQFQSILLSATLTPAVQRLAGMTL 598 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~-------------------------------~~~~q~vl~SAT~~~~~~~l~~~~~ 598 (930)
|||||++..|..++..+...+... .+..+.+++|||++..-..+....+
T Consensus 303 EADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l 382 (620)
T KOG0350|consen 303 EADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL 382 (620)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc
Confidence 999999999988887777665432 1234578899999888888888888
Q ss_pred CCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHh
Q psy15524 599 QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 678 (930)
Q Consensus 599 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~ 678 (930)
..|....+... ....+.+|..+.+.++.+....+-..+...+.... ..++|+|+++.+.+..++..|+
T Consensus 383 ~~Prl~~v~~~-----~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k-------~~r~lcf~~S~~sa~Rl~~~L~ 450 (620)
T KOG0350|consen 383 HIPRLFHVSKP-----LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK-------LNRTLCFVNSVSSANRLAHVLK 450 (620)
T ss_pred CCCceEEeecc-----cceeeecChhhhhceeecccccchHhHHHHHHHhh-------cceEEEEecchHHHHHHHHHHH
Confidence 88866555432 12346789999999999999898888888887542 5699999999999999999998
Q ss_pred -hhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 679 -TVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 679 -~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
.+...+..+-.+.|+++++.|.+.++.|..|+++||||+|+++||+|+.+|+.||+||+|.+..+|+||+|||||+|+.
T Consensus 451 v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~ 530 (620)
T KOG0350|consen 451 VEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQD 530 (620)
T ss_pred HHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCC
Confidence 4444466677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCcccHHHHHHHH
Q psy15524 758 GSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 758 g~~~~~~~~~e~~~~~~l~ 776 (930)
|.|+.++..++...+.++.
T Consensus 531 G~a~tll~~~~~r~F~klL 549 (620)
T KOG0350|consen 531 GYAITLLDKHEKRLFSKLL 549 (620)
T ss_pred ceEEEeeccccchHHHHHH
Confidence 9999999998887555443
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.7e-51 Score=466.53 Aligned_cols=356 Identities=26% Similarity=0.516 Sum_probs=301.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+++.+ +||..|+|+|.++|+.+++|+|++++||||||||++|++|+++.+.. ...+.++
T Consensus 28 ~~~~~l-~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~ 99 (401)
T PTZ00424 28 DSFDAL-KLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQA 99 (401)
T ss_pred CCHhhC-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceE
Confidence 579999 899999999974 89999999999999999999999999999999999999999988753 1346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+.+.+..++.... ..+..+.||.........+..+++|+|+||+++.+++.+ ....+++++++|+|
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViD 177 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLK-VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILD 177 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcC-ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEe
Confidence 9999999999999999988876543 344556788777777777778899999999999998876 44668999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++++.+|...+..++..++ +..|++++|||+++.+..+...++.+|..+.+.... .....+.+.+
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 245 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLP---PDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE---------LTLEGIRQFY 245 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCC---CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC---------cccCCceEEE
Confidence 9999999999887777766554 478999999999999998888888888776543321 1123455666
Q ss_pred EEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..+.. ..+...+...+... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..++++|++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~-------~~~~~ivF~~t~~~~~~l~~~l~~~---~~~~~~~h~~~~~~~R~~i~~~f~~ 315 (401)
T PTZ00424 246 VAVEKEEWKFDTLCDLYETL-------TITQAIIYCNTRRKVDYLTKKMHER---DFTVSCMHGDMDQKDRDLIMREFRS 315 (401)
T ss_pred EecChHHHHHHHHHHHHHhc-------CCCeEEEEecCcHHHHHHHHHHHHC---CCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 55554 23444444443321 1468999999999999999999874 7788899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|++|+.+++..+++.+++
T Consensus 316 g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 316 GSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred CCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888865
No 30
>KOG0334|consensus
Probab=100.00 E-value=1.9e-52 Score=475.66 Aligned_cols=362 Identities=32% Similarity=0.539 Sum_probs=324.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|.+. +++..++..++ .+||..+||||.+|||+|+.|+|+|.+|.||||||++|++|++.+....+ ....++|+.+
T Consensus 365 ~sW~q~-gl~~~il~tlk-kl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr-~~~~gdGPi~ 441 (997)
T KOG0334|consen 365 TSWTQC-GLSSKILETLK-KLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR-PLEEGDGPIA 441 (997)
T ss_pred chHhhC-CchHHHHHHHH-HhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC-ChhhCCCceE
Confidence 578888 99999999995 69999999999999999999999999999999999999999998876643 3445679999
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc--CCcccccceEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKFSKVEHLV 547 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~--~~~~~~~l~~lV 547 (930)
||++||||||.|+++.+.++... ..+.+.+++||.....+...++.++.|+||||||+++.+..+ +..++.++.++|
T Consensus 442 li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999999999999987 556778899999999999999999999999999999887643 233567777999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
+||||+|.++||++.+..|++.+ ++.+|+++||||+|..+..++...+..|+.+.+.... .+-+.+.+
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nl---rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s---------vV~k~V~q 588 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNL---RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS---------VVCKEVTQ 588 (997)
T ss_pred echhhhhheeccCcccchHHhhc---chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce---------eEeccceE
Confidence 99999999999999998888777 4699999999999999999999999999987776543 34467888
Q ss_pred EEEEcC-chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 628 HFIVTP-PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 628 ~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
.+.++. ...|+..|..+|..... ..++||||..++.|+.+.+.|.+. |+.+..+||+.++.+|..+++.|
T Consensus 589 ~v~V~~~e~eKf~kL~eLl~e~~e------~~~tiiFv~~qe~~d~l~~~L~~a---g~~~~slHGgv~q~dR~sti~df 659 (997)
T KOG0334|consen 589 VVRVCAIENEKFLKLLELLGERYE------DGKTIIFVDKQEKADALLRDLQKA---GYNCDSLHGGVDQHDRSSTIEDF 659 (997)
T ss_pred EEEEecCchHHHHHHHHHHHHHhh------cCCEEEEEcCchHHHHHHHHHHhc---CcchhhhcCCCchHHHHhHHHHH
Confidence 888888 88999999999887643 679999999999999999988864 88888899999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
+++..++||||++++||+|++.+.+||+||+|.-.++|+||+|||||+|+.|.|+.|+.|.+..+.-.|-
T Consensus 660 K~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~ 729 (997)
T KOG0334|consen 660 KNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLC 729 (997)
T ss_pred hccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997776655543
No 31
>KOG0337|consensus
Probab=100.00 E-value=2.7e-52 Score=425.64 Aligned_cols=358 Identities=34% Similarity=0.527 Sum_probs=323.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
-+|.++ ||+..+.+++.+ -||..|||+|+++||.+++++|++..|-||||||.||++|+++.+.... ..|.++
T Consensus 21 g~fqsm-gL~~~v~raI~k-kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ra 93 (529)
T KOG0337|consen 21 GGFQSM-GLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRA 93 (529)
T ss_pred CCcccc-CCCHHHHHHHHH-hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccce
Confidence 579999 999999999986 6999999999999999999999999999999999999999999998742 458899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
++++|||+||.|+.+.++.+++. ......+++||.+...+...+..++|||++|||+++.+... ..+.++.+.|+|+|
T Consensus 94 lilsptreLa~qtlkvvkdlgrg-t~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfd 171 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRG-TKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFD 171 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccc-cchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeeeeh
Confidence 99999999999999999998874 44567788999999999999999999999999999866554 34778999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++.++||.+.+..++..++. .+|+++||||+|..+-++++..+.+|..+.+.-+.. +.+.++..+
T Consensus 172 Eadrlfemgfqeql~e~l~rl~~---~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetk---------ise~lk~~f 239 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLPE---SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETK---------ISELLKVRF 239 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCCC---cceEEEEeccCchhhHHHHHccCCCCceEEeehhhh---------cchhhhhhe
Confidence 99999999999999999999876 779999999999999999999999999888654432 335567788
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
..+.+..|..+|...+...+. ..+++||+.|..+++++..++... |+....+.|.|++..|..-+.+|..+
T Consensus 240 ~~~~~a~K~aaLl~il~~~~~------~~~t~vf~~tk~hve~~~~ll~~~---g~~~s~iysslD~~aRk~~~~~F~~~ 310 (529)
T KOG0337|consen 240 FRVRKAEKEAALLSILGGRIK------DKQTIVFVATKHHVEYVRGLLRDF---GGEGSDIYSSLDQEARKINGRDFRGR 310 (529)
T ss_pred eeeccHHHHHHHHHHHhcccc------ccceeEEecccchHHHHHHHHHhc---CCCccccccccChHhhhhccccccCC
Confidence 889999999999988876543 568999999999999999999886 67777789999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+..+||.||+++||+|+|..+.||+||.|.+...|+||+||++|+|+.|.++.++.+.+..|+-.|..
T Consensus 311 k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~l 378 (529)
T KOG0337|consen 311 KTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQL 378 (529)
T ss_pred ccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999888865
No 32
>KOG0332|consensus
Probab=100.00 E-value=1.2e-51 Score=414.67 Aligned_cols=363 Identities=26% Similarity=0.425 Sum_probs=306.8
Q ss_pred CccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCc
Q psy15524 382 VSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRP 459 (930)
Q Consensus 382 ~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~ 459 (930)
.++|+++..+|++| +|.|++++++.. |+|..|+.||+.|+|.++.. +++|.++..|+|||.||.+.++.++..
T Consensus 82 pnsPlyS~ksFeeL-~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~--- 156 (477)
T KOG0332|consen 82 PNSPLYSAKSFEEL-RLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP--- 156 (477)
T ss_pred CCCCccccccHHhh-CCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc---
Confidence 46788899999999 999999999985 99999999999999999975 889999999999999999999988753
Q ss_pred ccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcc
Q psy15524 460 KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLK 539 (930)
Q Consensus 460 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~ 539 (930)
...-+.+++|+||||||.|+.+++.+.++.. .+...+...|..... .-.-..+|+|+|||.+.+++...+.+.
T Consensus 157 ---~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~r---G~~i~eqIviGTPGtv~Dlm~klk~id 229 (477)
T KOG0332|consen 157 ---DVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKR---GNKLTEQIVIGTPGTVLDLMLKLKCID 229 (477)
T ss_pred ---cccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCccccc---CCcchhheeeCCCccHHHHHHHHHhhC
Confidence 2346779999999999999999999998765 455666555542111 001125799999999999999878888
Q ss_pred cccceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccc
Q psy15524 540 FSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDS 618 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~ 618 (930)
++.++.+|+||||.+++. ||.+.-..|...++ ++.|.++||||..+.+..++...+.++..+.+.....
T Consensus 230 ~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP---~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel------- 299 (477)
T KOG0332|consen 230 LEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP---RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREEL------- 299 (477)
T ss_pred hhhceEEEecchhhhhhcccccccchhhhhhcC---CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhc-------
Confidence 999999999999998864 68888888887776 4899999999999999999999999887766544321
Q ss_pred eecCCCceEEEEEcCch-hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHH
Q psy15524 619 LVIPDSLKQHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697 (930)
Q Consensus 619 ~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~ 697 (930)
.-..++|.|+.|+.. .|+..+..+ ..... -+..||||.|++.+.+++..+... |..+..+||+|.-.
T Consensus 300 --~L~~IkQlyv~C~~~~~K~~~l~~l-yg~~t------igqsiIFc~tk~ta~~l~~~m~~~---Gh~V~~l~G~l~~~ 367 (477)
T KOG0332|consen 300 --ALDNIKQLYVLCACRDDKYQALVNL-YGLLT------IGQSIIFCHTKATAMWLYEEMRAE---GHQVSLLHGDLTVE 367 (477)
T ss_pred --cccchhhheeeccchhhHHHHHHHH-Hhhhh------hhheEEEEeehhhHHHHHHHHHhc---CceeEEeeccchhH
Confidence 124688999998765 577777663 32221 468999999999999999999874 89999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC------ChhhHHhhhcccccCCCCceEEEEeCccc-HH
Q psy15524 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS------SSTDYVHRVGRTARVGHEGSSLLFLIPSE-VK 770 (930)
Q Consensus 698 ~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~ 770 (930)
+|..+++.|+.|..+|||+|++++||+|++.|++||+||.|. +.++|+||+|||||.|+.|.++-|+...+ ..
T Consensus 368 ~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 368 QRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMN 447 (477)
T ss_pred HHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHH
Confidence 999999999999999999999999999999999999999995 78999999999999999999999888654 45
Q ss_pred HHHHHHhc
Q psy15524 771 LVEELQNR 778 (930)
Q Consensus 771 ~~~~l~~~ 778 (930)
.++.++++
T Consensus 448 ~mn~iq~~ 455 (477)
T KOG0332|consen 448 IMNKIQKH 455 (477)
T ss_pred HHHHHHHH
Confidence 67777664
No 33
>KOG0327|consensus
Probab=100.00 E-value=1.4e-50 Score=412.29 Aligned_cols=364 Identities=28% Similarity=0.502 Sum_probs=321.6
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ +|.+.+++.+. .+||+.|+.||++||.++..|.|+++++++|+|||.+|.+++++.+.. ......|
T Consensus 26 dsfddm-~L~e~LLrgiy-~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------~~ke~qa 97 (397)
T KOG0327|consen 26 DSFDDM-NLKESLLRGIY-AYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------SVKETQA 97 (397)
T ss_pred hhhhhc-CCCHHHHhHHH-hhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc------chHHHHH
Confidence 479999 99999999998 589999999999999999999999999999999999999999998743 2345679
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHH-hcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++++||||||.|+.++...++...+. .+..+.||.+...+...+ ..+++|+++||||+.+.+... .+..+.++++|+
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~-~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvl 175 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDV-SVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVL 175 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcccce-eeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEee
Confidence 99999999999999998888876554 444456666665444444 456899999999999998774 677888999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||.++..||.+.+..|.+.++. +.|++++|||.|.++.+..+.++.+|+.+.+.... ...+.++|.
T Consensus 176 DEaDEmLs~gfkdqI~~if~~lp~---~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~---------ltl~gikq~ 243 (397)
T KOG0327|consen 176 DEADEMLSRGFKDQIYDIFQELPS---DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE---------LTLEGIKQF 243 (397)
T ss_pred cchHhhhccchHHHHHHHHHHcCc---chhheeecccCcHHHHHHHHHhccCceEEEecchh---------hhhhheeee
Confidence 999999999999999999999876 78999999999999999999999999999887654 124678899
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|+.+..+.|+..|..+... -...+|||+|++.+..+...|... +..+..+||.|.+.+|..+.+.|+.
T Consensus 244 ~i~v~k~~k~~~l~dl~~~---------~~q~~if~nt~r~v~~l~~~L~~~---~~~~s~~~~d~~q~~R~~~~~ef~~ 311 (397)
T KOG0327|consen 244 YINVEKEEKLDTLCDLYRR---------VTQAVIFCNTRRKVDNLTDKLRAH---GFTVSAIHGDMEQNERDTLMREFRS 311 (397)
T ss_pred eeeccccccccHHHHHHHh---------hhcceEEecchhhHHHHHHHHhhC---CceEEEeecccchhhhhHHHHHhhc
Confidence 9999888899999888762 468899999999999999999654 7888899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh-cCCccchhch
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN-RRIRIEEIKL 787 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~-~~~~~~~~~~ 787 (930)
|..+|||+|+.++||+|+..++.||+|+.|.....|+||+||+||.|++|.++.|+..++...++.+++ ++.++++.+.
T Consensus 312 gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 312 GSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred CCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 999999999999999999999999999999999999999999999999999999999999988888875 4677776653
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.5e-48 Score=463.03 Aligned_cols=346 Identities=20% Similarity=0.266 Sum_probs=267.4
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
.+++.+.+.|.+ +||..|+++|.++||.+++|+|+++.+|||||||+||++|+++.+.. ..+.++|||+|||
T Consensus 20 ~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChH
Confidence 489999999974 89999999999999999999999999999999999999999999875 2467899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc-C--CcccccceEEEEecchh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-E--TLKFSKVEHLVLDEADR 553 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-~--~~~~~~l~~lVlDEah~ 553 (930)
|||.|+.+.++++. ...+.+..+.|+.. ..+...++.+++|+|+||++|...+... . ...++++++||+||||+
T Consensus 92 aLa~q~~~~l~~l~--~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 92 ALAADQLRAVRELT--LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 99999999999886 22344555556554 4555667788999999999986433211 1 12378999999999999
Q ss_pred hhhcCcHHHHHHHHHHHhh----cCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 554 ILDQGYERDIAEFLEILKK----QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 554 l~~~g~~~~l~~i~~~l~~----~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
+.+ .|+..+..+++.+.. ...++|++++|||+++... ++...+.+|..+...+.. |....+..
T Consensus 169 ~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~~~-----------~~~~~~~~ 235 (742)
T TIGR03817 169 YRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVTEDGS-----------PRGARTVA 235 (742)
T ss_pred ccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCCCC-----------CcCceEEE
Confidence 976 477777777666643 3457899999999998755 566666666543211110 01111111
Q ss_pred EEcCc-----------------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC-----CceE
Q psy15524 630 IVTPP-----------------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-----NIAF 687 (930)
Q Consensus 630 ~~~~~-----------------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~-----~~~~ 687 (930)
...+. ..+...+...+.. +.++||||+|++.++.++..+.+.+.. +..+
T Consensus 236 ~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~---------~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v 306 (742)
T TIGR03817 236 LWEPPLTELTGENGAPVRRSASAEAADLLADLVAE---------GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERV 306 (742)
T ss_pred EecCCccccccccccccccchHHHHHHHHHHHHHC---------CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccch
Confidence 11111 1222333333321 569999999999999999988765322 3466
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCc-
Q psy15524 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIP- 766 (930)
Q Consensus 688 ~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~- 766 (930)
..+||++++++|..++++|++|+.++|||||+++||||+|++++||++|.|.+..+|+||+|||||.|+.|.++++...
T Consensus 307 ~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 307 AAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred hheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred -ccHHHHHHH
Q psy15524 767 -SEVKLVEEL 775 (930)
Q Consensus 767 -~e~~~~~~l 775 (930)
.|..++...
T Consensus 387 ~~d~~~~~~~ 396 (742)
T TIGR03817 387 PLDTYLVHHP 396 (742)
T ss_pred hHHHHHHhCH
Confidence 444444433
No 35
>KOG4284|consensus
Probab=100.00 E-value=7.8e-49 Score=418.06 Aligned_cols=349 Identities=27% Similarity=0.412 Sum_probs=306.2
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
...|+++ .|...++..|+. .+|..||+||..|||.++.+-|+||+|..|+|||++|.+.+++.+.. +...+.
T Consensus 24 ~~~fe~l-~l~r~vl~glrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~~q 95 (980)
T KOG4284|consen 24 TPGFEQL-ALWREVLLGLRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSHIQ 95 (980)
T ss_pred CCCHHHH-HHHHHHHHHHHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCcce
Confidence 3568888 788889999975 69999999999999999999999999999999999999999988764 355788
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++||+||||+|.|+.+.+.+++..+....+.++.||+.......++. .++|+|+||||+.++... ..++.++++++|+
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVL 173 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHh-cCCCccceeEEEe
Confidence 99999999999999999999999999999999999998887777775 588999999999988876 7789999999999
Q ss_pred ecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 549 DEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 549 DEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
||||.+++. .|...+..|++.|++ .+|+++||||.|..+..++..++++|.++....... ..-+++|
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~---~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~---------~L~GikQ 241 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQ---IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV---------QLFGIKQ 241 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcch---hheeeEEeccCchhHHHHHHHHhcccceeecccCCc---------eeechhh
Confidence 999999995 499999999999987 789999999999999999999999999998754321 1235677
Q ss_pred EEEEcCch--------hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHH
Q psy15524 628 HFIVTPPK--------LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 628 ~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R 699 (930)
+++..+.. .++..|-..+... +-.+.||||+....|+.++..|+.. |+.+..+.|.|+|.+|
T Consensus 242 yv~~~~s~nnsveemrlklq~L~~vf~~i-------py~QAlVF~~~~sra~~~a~~L~ss---G~d~~~ISgaM~Q~~R 311 (980)
T KOG4284|consen 242 YVVAKCSPNNSVEEMRLKLQKLTHVFKSI-------PYVQALVFCDQISRAEPIATHLKSS---GLDVTFISGAMSQKDR 311 (980)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHHHhhC-------chHHHHhhhhhhhhhhHHHHHhhcc---CCCeEEeccccchhHH
Confidence 77655443 2344444333321 2458899999999999999999874 8999999999999999
Q ss_pred HHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 700 TEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 700 ~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
..+++.+++-..+|||+||..+||||-|+|++||+.|+|.+..+|.||||||||.|..|.++.|+...+.
T Consensus 312 l~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 312 LLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999987554
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.6e-47 Score=443.31 Aligned_cols=346 Identities=21% Similarity=0.290 Sum_probs=263.5
Q ss_pred CCCCC--CCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 390 TSYEE--FPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 390 ~~f~~--l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
..|.. | .....+...+.+.||+..++|+|.++|+.++.|+|+++.||||+|||+||++|++.. +.
T Consensus 435 ~~W~~~~f-pw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~G 501 (1195)
T PLN03137 435 KKWSSRNF-PWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PG 501 (1195)
T ss_pred ccccccCC-CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CC
Confidence 34553 4 455667777888899999999999999999999999999999999999999999842 34
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh------cCCcEEEECchhHHH---hhhccCCc
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR------KGISILVATPGRLLD---HCKHTETL 538 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~------~~~~Ilv~Tp~rl~~---~l~~~~~~ 538 (930)
.+|||+|+++|+.++...+... .+.+..+.++.....+...+. ..++|+|+|||+|.. ++.....+
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 6999999999998766665543 245667788876655444332 358999999999852 12211111
Q ss_pred -ccccceEEEEecchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhc--CCCEEEEccCCCCcc
Q psy15524 539 -KFSKVEHLVLDEADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTL--QNPIQIDAADSTDIH 613 (930)
Q Consensus 539 -~~~~l~~lVlDEah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~ 613 (930)
....+.+|||||||++++|| |+..+..+ ..+....+..++++||||++..+...+...+ .++..+....
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L-~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf----- 650 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF----- 650 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHH-HHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc-----
Confidence 23458999999999999998 66766654 2333334578999999999998776444333 2333322110
Q ss_pred cCccceecCCCceEEEEEcCchhh-HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecC
Q psy15524 614 NTTDSLVIPDSLKQHFIVTPPKLR-LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHG 692 (930)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg 692 (930)
..| . ..|.+++...+ ...+..++.... .+...||||.|++.++.+++.|... |+.+..+||
T Consensus 651 ------~Rp-N--L~y~Vv~k~kk~le~L~~~I~~~~------~~esgIIYC~SRke~E~LAe~L~~~---Gika~~YHA 712 (1195)
T PLN03137 651 ------NRP-N--LWYSVVPKTKKCLEDIDKFIKENH------FDECGIIYCLSRMDCEKVAERLQEF---GHKAAFYHG 712 (1195)
T ss_pred ------Ccc-c--eEEEEeccchhHHHHHHHHHHhcc------cCCCceeEeCchhHHHHHHHHHHHC---CCCeeeeeC
Confidence 011 1 13333333322 334444443211 1457899999999999999999874 888999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHH
Q psy15524 693 SMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLV 772 (930)
Q Consensus 693 ~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~ 772 (930)
+|++.+|..++++|..|+.+|||||++++||||+|+|++||||++|.+++.|+||+|||||.|.+|.|++|+.+.+...+
T Consensus 713 GLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~ 792 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRV 792 (1195)
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHh
Q psy15524 773 EELQN 777 (930)
Q Consensus 773 ~~l~~ 777 (930)
+.+..
T Consensus 793 ~~lI~ 797 (1195)
T PLN03137 793 KHMIS 797 (1195)
T ss_pred HHHHh
Confidence 76654
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-46 Score=430.91 Aligned_cols=332 Identities=22% Similarity=0.331 Sum_probs=254.3
Q ss_pred HHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 406 l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
|++.|||..|+|+|.++|+.+++|+|+++.||||||||+||++|++.. +..+|||+||++|+.|+.+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHH
Confidence 556799999999999999999999999999999999999999999731 34689999999999999998
Q ss_pred HHHhhccCCCcceEEEeCCCchHHHH---HHH-hcCCcEEEECchhHHHhhhccCCc-ccccceEEEEecchhhhhcC--
Q psy15524 486 FTKLCKSFTWIVPSWLTGGEKMKSEK---ARI-RKGISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEADRILDQG-- 558 (930)
Q Consensus 486 ~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah~l~~~g-- 558 (930)
+..++ +....+.++....... ..+ ....+|+++||+++.........+ ...+++++||||||++++||
T Consensus 71 l~~~g-----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 71 LKASG-----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 87643 2344555554433221 122 234899999999985432111112 46789999999999999988
Q ss_pred cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhh--cCCCEEEEccCCCCcccCccceecCCCceEEEEEcCch-
Q psy15524 559 YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT--LQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK- 635 (930)
Q Consensus 559 ~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 635 (930)
|...+..+.... ...++.+++++|||+++.+....... +.+|..+...... ..+ .+......
T Consensus 146 fr~~~~~l~~l~-~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r------------~nl--~~~v~~~~~ 210 (470)
T TIGR00614 146 FRPDYKALGSLK-QKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR------------PNL--YYEVRRKTP 210 (470)
T ss_pred cHHHHHHHHHHH-HHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC------------CCc--EEEEEeCCc
Confidence 566665553333 33357899999999999865543333 3455443321110 111 12222221
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv 715 (930)
.....+..++.... .+..+||||+|++.++.+++.|... ++.+..+||+|++++|..+++.|++|+.+|||
T Consensus 211 ~~~~~l~~~l~~~~------~~~~~IIF~~s~~~~e~la~~L~~~---g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLV 281 (470)
T TIGR00614 211 KILEDLLRFIRKEF------KGKSGIIYCPSRKKSEQVTASLQNL---GIAAGAYHAGLEISARDDVHHKFQRDEIQVVV 281 (470)
T ss_pred cHHHHHHHHHHHhc------CCCceEEEECcHHHHHHHHHHHHhc---CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 33444555554311 2556799999999999999999875 78889999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 716 ~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
||+++++|+|+|+|++||++++|.+++.|+||+|||||.|.+|.|++|+.+.+...++.+...
T Consensus 282 aT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 282 ATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred EechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999888887543
No 38
>KOG0344|consensus
Probab=100.00 E-value=4.5e-47 Score=406.30 Aligned_cols=359 Identities=28% Similarity=0.442 Sum_probs=295.9
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
..++.++..+.+ .+|..|+|+|.+|||.++.++|+++|||||||||++|.+|+++++..... .....|.+++|+.|||
T Consensus 142 ~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 142 SMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVGLRALILSPTR 219 (593)
T ss_pred hhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccceEEEEecchH
Confidence 578888888874 79999999999999999999999999999999999999999999987432 1235689999999999
Q ss_pred HHHHHHHHHHHHhhccCCC-cceEEEeCC-CchHHHHHHHhcCCcEEEECchhHHHhhhccC-CcccccceEEEEecchh
Q psy15524 477 ELALQTLEIFTKLCKSFTW-IVPSWLTGG-EKMKSEKARIRKGISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADR 553 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~-~~~~~~~gg-~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~~~~~l~~lVlDEah~ 553 (930)
+||.|++.++.++....+. .....+... .............++|+|+||-++..++.... .+.+..+.++|+||||+
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~ 299 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL 299 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh
Confidence 9999999999998732111 111111111 11111112223457999999999998887632 35789999999999999
Q ss_pred hhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc
Q psy15524 554 ILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT 632 (930)
Q Consensus 554 l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (930)
+.+. +|..++..|+..+.. ++..+-+||||.+..+++|+...+.++..+.+...... -..+.|..+.+
T Consensus 300 lfe~~~f~~Qla~I~sac~s--~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa---------~~~V~QelvF~ 368 (593)
T KOG0344|consen 300 LFEPEFFVEQLADIYSACQS--PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA---------NETVDQELVFC 368 (593)
T ss_pred hhChhhHHHHHHHHHHHhcC--cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH---------hhhhhhhheee
Confidence 9999 899999999999875 68888999999999999999999999888776544221 13455555544
Q ss_pred -CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC
Q psy15524 633 -PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711 (930)
Q Consensus 633 -~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~ 711 (930)
....|+.++...+..-. ..+++||+.+.+.+..+++.|.. -.++.+..+||..++.+|.+++++|+.|++
T Consensus 369 gse~~K~lA~rq~v~~g~-------~PP~lIfVQs~eRak~L~~~L~~--~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 369 GSEKGKLLALRQLVASGF-------KPPVLIFVQSKERAKQLFEELEI--YDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred ecchhHHHHHHHHHhccC-------CCCeEEEEecHHHHHHHHHHhhh--ccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 45678888877776532 67999999999999999998862 247888889999999999999999999999
Q ss_pred cEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 712 ~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
.||+||++++||+|+.+|++||+||.|.+...|+||+||+||+|+.|.++.|++..+.++++-+.+
T Consensus 440 wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999998888777654
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.8e-45 Score=440.08 Aligned_cols=381 Identities=22% Similarity=0.276 Sum_probs=279.5
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.|+++ +|++.+.+.+.+ .||.+|+|+|.+|++. +++|+|++++||||||||++|.+|+++.+.. +.++
T Consensus 2 ~~~~l-~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~ka 70 (737)
T PRK02362 2 KIAEL-PLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKA 70 (737)
T ss_pred Chhhc-CCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcE
Confidence 58889 899999999985 8999999999999998 7789999999999999999999999998853 5679
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++||.|+++.|+++.. ++ ..+..++|+...... .....+|+|+||+++..++++. ...+++++++|+|
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~g-~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViD 144 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-LG-VRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVD 144 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-CC-CEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEE
Confidence 9999999999999999997643 33 456677787654332 2346899999999999988763 3457899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH--HHHHHHhhhcC----CCEEEEccCCCCcccCccceecCC
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP--AVQRLAGMTLQ----NPIQIDAADSTDIHNTTDSLVIPD 623 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~--~~~~l~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~ 623 (930)
|+|.+.+.+++..++.++..+....++.|++++|||+++ ++..|.+.... .|+.+...-.. ......+.
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~-----~~~~~~~~ 219 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFY-----GGAIHFDD 219 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEec-----CCeecccc
Confidence 999999999999999999988877778999999999986 34444332111 11111000000 00000000
Q ss_pred CceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC-------------------
Q psy15524 624 SLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE------------------- 683 (930)
Q Consensus 624 ~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------------- 683 (930)
.+.....+. ......+...+. .++++||||+|+..++.++..|......
T Consensus 220 --~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (737)
T PRK02362 220 --SQREVEVPSKDDTLNLVLDTLE---------EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIRE 288 (737)
T ss_pred --ccccCCCccchHHHHHHHHHHH---------cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 011111111 111222222221 2679999999999998888777543210
Q ss_pred --------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec-----CCCC
Q psy15524 684 --------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT-----APSS 740 (930)
Q Consensus 684 --------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~-----~p~s 740 (930)
...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+
T Consensus 289 ~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s 368 (737)
T PRK02362 289 VSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIP 368 (737)
T ss_pred ccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCC
Confidence 124666799999999999999999999999999999999999999999997 66 6889
Q ss_pred hhhHHhhhcccccCCCC--ceEEEEeCccc-H-HHHHHHH-hcCCccchhch--HHHHHhhhhhhccCccc
Q psy15524 741 STDYVHRVGRTARVGHE--GSSLLFLIPSE-V-KLVEELQ-NRRIRIEEIKL--KDCLQNLLSVKMEGDLS 804 (930)
Q Consensus 741 ~~~y~qr~GRagR~g~~--g~~~~~~~~~e-~-~~~~~l~-~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 804 (930)
..+|+||+|||||.|.+ |.+++++.+.+ . ++++... ....++++... ..+.+++++.+..+...
T Consensus 369 ~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~ 439 (737)
T PRK02362 369 VLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFAR 439 (737)
T ss_pred HHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccC
Confidence 99999999999999986 88999887653 2 3444443 44555554432 24566677766665543
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.5e-44 Score=423.77 Aligned_cols=340 Identities=20% Similarity=0.315 Sum_probs=260.5
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
.+++...+.|.+.|||..++|+|.++|+.++.|+|+++.||||+|||+||++|++.. +..+|||+|++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~ 75 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLI 75 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHH
Confidence 455556677777899999999999999999999999999999999999999999842 23589999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHH---HHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecch
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA---RIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD 552 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah 552 (930)
+|+.|+.+.+...+ +....+.++........ .+. ...+++++||+++...... ..+...+++++|+||||
T Consensus 76 sL~~dqv~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH 149 (607)
T PRK11057 76 SLMKDQVDQLLANG-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAH 149 (607)
T ss_pred HHHHHHHHHHHHcC-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCcc
Confidence 99999999888753 23444555544333222 222 3478999999998632111 12334578999999999
Q ss_pred hhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHH-hh-hcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 553 RILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLA-GM-TLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 553 ~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~-~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
++.+|| |...+..+- .+....+..+++++|||+++.+.... .. .+.+|...... .. . ..+ .
T Consensus 150 ~i~~~G~~fr~~y~~L~-~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~-~~----------r-~nl--~ 214 (607)
T PRK11057 150 CISQWGHDFRPEYAALG-QLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS-FD----------R-PNI--R 214 (607)
T ss_pred ccccccCcccHHHHHHH-HHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC-CC----------C-Ccc--e
Confidence 999988 556555443 33333457899999999998765432 22 23455433211 10 0 111 2
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
|...........+..++... .+.++||||+|++.++.+++.|... ++.+..+||+|++++|..+++.|++
T Consensus 215 ~~v~~~~~~~~~l~~~l~~~-------~~~~~IIFc~tr~~~e~la~~L~~~---g~~v~~~Ha~l~~~~R~~i~~~F~~ 284 (607)
T PRK11057 215 YTLVEKFKPLDQLMRYVQEQ-------RGKSGIIYCNSRAKVEDTAARLQSR---GISAAAYHAGLDNDVRADVQEAFQR 284 (607)
T ss_pred eeeeeccchHHHHHHHHHhc-------CCCCEEEEECcHHHHHHHHHHHHhC---CCCEEEecCCCCHHHHHHHHHHHHC
Confidence 33333334444555555431 2678999999999999999999875 7888999999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
|+.+|||||+++++|+|+|+|++||+||+|.+.++|+||+|||||.|.+|.|++|+.+.+..+++++....
T Consensus 285 g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 285 DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred CCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999998888776543
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.4e-44 Score=430.88 Aligned_cols=359 Identities=22% Similarity=0.276 Sum_probs=260.5
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
.++|.+.+.+.+ +|..|||+|+++||.+++|+|++++||||||||++|.+|+++.+...........+.++|||+|||
T Consensus 17 ~l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtr 94 (876)
T PRK13767 17 LLRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLR 94 (876)
T ss_pred hcCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHH
Confidence 578888888875 788999999999999999999999999999999999999999887532211123578899999999
Q ss_pred HHHHHHHHHHHHh-------h----ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCC-cccccce
Q psy15524 477 ELALQTLEIFTKL-------C----KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-LKFSKVE 544 (930)
Q Consensus 477 eLa~Q~~~~~~~~-------~----~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-~~~~~l~ 544 (930)
+|+.|+++.+... . ...+.+.+...+|+.........+.+.++|+|+||++|..++.+... ..+++++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~ 174 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCC
Confidence 9999998866532 2 22224556777888776666666677899999999999887765321 1478999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcC-ccceEEEEccccCH--HHHHHHhhhc----CCCEEEEccCCCCcccCcc
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQK-PQFQSILLSATLTP--AVQRLAGMTL----QNPIQIDAADSTDIHNTTD 617 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~-~~~q~vl~SAT~~~--~~~~l~~~~~----~~~~~i~~~~~~~~~~~~~ 617 (930)
+||+||+|.+.+..++..+...++.+.... +..|++++|||+++ .+..+..... ..+..+....... ....
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k--~~~i 252 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVK--PFDI 252 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCc--cceE
Confidence 999999999998888877777777776544 57899999999986 2333332211 1122211100000 0000
Q ss_pred ceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC---CceEEEecCCC
Q psy15524 618 SLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE---NIAFFKLHGSM 694 (930)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~---~~~~~~lhg~~ 694 (930)
....| ... ............+...+...... ++++||||+|+..++.++..|...+.. +..+..+||+|
T Consensus 253 ~v~~p--~~~-l~~~~~~~~~~~l~~~L~~~i~~-----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~l 324 (876)
T PRK13767 253 KVISP--VDD-LIHTPAEEISEALYETLHELIKE-----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSL 324 (876)
T ss_pred EEecc--Ccc-ccccccchhHHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCC
Confidence 00000 000 00111111222233333332221 568999999999999999998875431 35677889999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC-CCceEEEEeCcc
Q psy15524 695 SQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG-HEGSSLLFLIPS 767 (930)
Q Consensus 695 ~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g-~~g~~~~~~~~~ 767 (930)
++++|..++++|++|+.+|||||+++++|||+|++++||+++.|.+..+|+||+|||||.+ ..+.+.++....
T Consensus 325 s~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 325 SREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred CHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999999999999874 445666666543
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-43 Score=417.56 Aligned_cols=334 Identities=20% Similarity=0.312 Sum_probs=260.3
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
+.|.+.|||.+++|+|.++|+.++.|+|++++||||+|||+||++|++.. +..++||+|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHH
Confidence 45677799999999999999999999999999999999999999999831 335899999999999999
Q ss_pred HHHHHhhccCCCcceEEEeCCCchHHHHH---HH-hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-
Q psy15524 484 EIFTKLCKSFTWIVPSWLTGGEKMKSEKA---RI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG- 558 (930)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~~-~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g- 558 (930)
+.++.++ +.+..+.++........ .+ ....+|+++||+++...... ..+...++++||+||||++.+||
T Consensus 71 ~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~ 144 (591)
T TIGR01389 71 DQLRAAG-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGH 144 (591)
T ss_pred HHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccC
Confidence 9988753 23455556554433222 12 34589999999998542221 12345689999999999999988
Q ss_pred -cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcC--CCEEEEccCCCCcccCccceecCCCceEEEEEcCch
Q psy15524 559 -YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ--NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK 635 (930)
Q Consensus 559 -~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (930)
|...+..+....... +..+++++|||+++.+.......+. ++..+... . .. . ...+......
T Consensus 145 ~frp~y~~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-~----------~r-~--nl~~~v~~~~ 209 (591)
T TIGR01389 145 DFRPEYQRLGSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEFITS-F----------DR-P--NLRFSVVKKN 209 (591)
T ss_pred ccHHHHHHHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-C----------CC-C--CcEEEEEeCC
Confidence 777776665554433 3556999999999887654444332 33222110 0 00 1 1233333444
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv 715 (930)
.+...+..++.... +.++||||+|++.++.+++.|... ++.+..+||+|++++|..+++.|.+|+.+|||
T Consensus 210 ~~~~~l~~~l~~~~-------~~~~IIf~~sr~~~e~la~~L~~~---g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlV 279 (591)
T TIGR01389 210 NKQKFLLDYLKKHR-------GQSGIIYASSRKKVEELAERLESQ---GISALAYHAGLSNKVRAENQEDFLYDDVKVMV 279 (591)
T ss_pred CHHHHHHHHHHhcC-------CCCEEEEECcHHHHHHHHHHHHhC---CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 55666666665421 568999999999999999999864 78888999999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCC
Q psy15524 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRI 780 (930)
Q Consensus 716 ~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~ 780 (930)
||+++++|+|+|+|++||++++|.+.+.|+||+|||||.|.+|.|++++.+.+...++++.....
T Consensus 280 aT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~ 344 (591)
T TIGR01389 280 ATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSE 344 (591)
T ss_pred EechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999988888776543
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-41 Score=409.22 Aligned_cols=351 Identities=21% Similarity=0.255 Sum_probs=256.6
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
+|+++ ++++.+.+.+.+ +||..|+|+|.++++. +++|+|++++||||||||++|.+|+++.+.. .+.++
T Consensus 2 ~~~~l-~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~ 71 (720)
T PRK00254 2 KVDEL-RVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKA 71 (720)
T ss_pred cHHHc-CCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeE
Confidence 57788 899999999985 8999999999999986 7899999999999999999999999998764 25689
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
|||+|+++|+.|+++.+..+. ..+ ..+..++|+...... ....++|+|+||+++..++++ ....+++++++|+|
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~-~~g-~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViD 145 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWE-KLG-LRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVAD 145 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHh-hcC-CEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEc
Confidence 999999999999999998753 233 456667787654322 235689999999999988875 33457899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|+|.+.+.+++..++.++..+.. ..|++++|||+++ ..+++.+. ....+...... ..... ....+.+
T Consensus 146 E~H~l~~~~rg~~le~il~~l~~---~~qiI~lSATl~n-~~~la~wl-~~~~~~~~~rp----v~l~~----~~~~~~~ 212 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHMLG---RAQILGLSATVGN-AEELAEWL-NAELVVSDWRP----VKLRK----GVFYQGF 212 (720)
T ss_pred CcCccCCccchHHHHHHHHhcCc---CCcEEEEEccCCC-HHHHHHHh-CCccccCCCCC----Cccee----eEecCCe
Confidence 99999999999999988887753 6899999999986 34444432 22111100000 00000 0000111
Q ss_pred EEcCch--hh-HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC------------------------
Q psy15524 630 IVTPPK--LR-LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG------------------------ 682 (930)
Q Consensus 630 ~~~~~~--~~-~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~------------------------ 682 (930)
...... .+ ...+...+..... .++++||||+|+..++.++..+.....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 213 LFWEDGKIERFPNSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred eeccCcchhcchHHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 111111 11 1112222222211 167999999999999877655532110
Q ss_pred ------CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE-------ecCC-CChhhHHhhh
Q psy15524 683 ------ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ-------YTAP-SSSTDYVHRV 748 (930)
Q Consensus 683 ------~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~-------~~~p-~s~~~y~qr~ 748 (930)
-...+..+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||. ++.| .+..+|.||+
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~ 367 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMM 367 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhh
Confidence 0124667799999999999999999999999999999999999999999995 3433 3577999999
Q ss_pred cccccCC--CCceEEEEeCccc-HHHHHHH
Q psy15524 749 GRTARVG--HEGSSLLFLIPSE-VKLVEEL 775 (930)
Q Consensus 749 GRagR~g--~~g~~~~~~~~~e-~~~~~~l 775 (930)
|||||.| ..|.+++++.+.+ ..+++++
T Consensus 368 GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 368 GRAGRPKYDEVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred hccCCCCcCCCceEEEEecCcchHHHHHHH
Confidence 9999986 4699999988755 3455544
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.4e-41 Score=401.78 Aligned_cols=356 Identities=20% Similarity=0.258 Sum_probs=261.2
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.|+++ ++++.+.+.+.+ .+|. ++++|.++++.+.+|+|++++||||||||+++.+++++.+.. +.++|
T Consensus 2 ~~~~~-~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v 69 (674)
T PRK01172 2 KISDL-GYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSI 69 (674)
T ss_pred cHhhc-CCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEE
Confidence 57888 899999999974 6886 999999999999999999999999999999999999988754 56799
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++|+++||.|+++.|.++.. .+ ..+...+|+...... ..+.++|+|+|||++..++.++. ..+++++++|+||
T Consensus 70 ~i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDE 143 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLRS-LG-MRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADE 143 (674)
T ss_pred EEechHHHHHHHHHHHHHHhh-cC-CeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEec
Confidence 999999999999999987642 33 345566676543322 23568999999999998887643 4578999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE-
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF- 629 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 629 (930)
||++.+.+++..++.++..++...++.|++++|||+++ ..+++.+. ..+.+ .... .|..+....
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl-~~~~~-~~~~------------r~vpl~~~i~ 208 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWL-NASLI-KSNF------------RPVPLKLGIL 208 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHh-CCCcc-CCCC------------CCCCeEEEEE
Confidence 99999988999999988888776678999999999976 34444432 21110 0000 000111000
Q ss_pred ----EEcCchhh-HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC---------------------
Q psy15524 630 ----IVTPPKLR-LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE--------------------- 683 (930)
Q Consensus 630 ----~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~--------------------- 683 (930)
.......+ ...+...+..... .++++||||++++.++.++..|.+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 283 (674)
T PRK01172 209 YRKRLILDGYERSQVDINSLIKETVN-----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEM 283 (674)
T ss_pred ecCeeeecccccccccHHHHHHHHHh-----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHH
Confidence 00111111 1112223332211 2679999999999999988887654221
Q ss_pred -CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEe--------cCCCChhhHHhhhcccccC
Q psy15524 684 -NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY--------TAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 684 -~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~--------~~p~s~~~y~qr~GRagR~ 754 (930)
..++..+||+|++++|..+++.|++|.++|||||+++++|+|+|+..+||.. ..|.+..+|.||+|||||.
T Consensus 284 l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~ 363 (674)
T PRK01172 284 LPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRP 363 (674)
T ss_pred HhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCC
Confidence 1235667999999999999999999999999999999999999998766631 1356889999999999999
Q ss_pred CC--CceEEEEeCccc-HHHHHHHH-hcCCccch
Q psy15524 755 GH--EGSSLLFLIPSE-VKLVEELQ-NRRIRIEE 784 (930)
Q Consensus 755 g~--~g~~~~~~~~~e-~~~~~~l~-~~~~~~~~ 784 (930)
|. .|.+++++...+ ..+++++. ....|+++
T Consensus 364 g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S 397 (674)
T PRK01172 364 GYDQYGIGYIYAASPASYDAAKKYLSGEPEPVIS 397 (674)
T ss_pred CCCCcceEEEEecCcccHHHHHHHHcCCCCceee
Confidence 96 577888876544 45555543 45555544
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.7e-41 Score=390.73 Aligned_cols=324 Identities=17% Similarity=0.151 Sum_probs=244.4
Q ss_pred HHhcCCCCCCCHHHHHhHHhhhcCC-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE-EEccCHHHHHHHH
Q psy15524 406 LNEGMNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV-IILPTRELALQTL 483 (930)
Q Consensus 406 l~~~~~~~~~~~iQ~~~i~~il~~~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l-il~PtreLa~Q~~ 483 (930)
+.+..||+ |||||.++||.++.|+ ++++++|||||||.+|.++++... . ....++.| +++|||||+.|++
T Consensus 8 f~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~------~~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 8 YQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I------GAKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred HHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c------cccccceEEEeCchHHHHHHHH
Confidence 44446898 9999999999999998 588889999999997765555321 1 12234445 5779999999999
Q ss_pred HHHHHhhccCC----------------------CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCc---
Q psy15524 484 EIFTKLCKSFT----------------------WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL--- 538 (930)
Q Consensus 484 ~~~~~~~~~~~----------------------~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~--- 538 (930)
+.+.++.+.+. .+.+..++||.....+...+..+++|||+|+ +++.+ +.+
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~s-r~L~~g 154 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGS-RLLFSG 154 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcC-Cccccc
Confidence 99999887542 2567888999999999999999999999995 44443 222
Q ss_pred -------------ccccceEEEEecchhhhhcCcHHHHHHHHHHHh--hcCccceEEEEccccCHHHHHHHhhhcCCCEE
Q psy15524 539 -------------KFSKVEHLVLDEADRILDQGYERDIAEFLEILK--KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603 (930)
Q Consensus 539 -------------~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~--~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~ 603 (930)
.+++++++|||||| ++++|...+..|++.+. ....++|+++||||++..+..+....+.++..
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~ 232 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK 232 (844)
T ss_pred cccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCce
Confidence 26889999999999 68999999999998752 21123799999999999888888777777766
Q ss_pred EEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC
Q psy15524 604 IDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE 683 (930)
Q Consensus 604 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~ 683 (930)
+.+.... .....+.+ ++.++...+...+...+..... ..++++||||+|++.++.+++.|.+.
T Consensus 233 i~V~~~~---------l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~----e~g~~vLVF~NTv~~Aq~L~~~L~~~--- 295 (844)
T TIGR02621 233 HPVLKKR---------LAAKKIVK-LVPPSDEKFLSTMVKELNLLMK----DSGGAILVFCRTVKHVRKVFAKLPKE--- 295 (844)
T ss_pred eeccccc---------ccccceEE-EEecChHHHHHHHHHHHHHHHh----hCCCcEEEEECCHHHHHHHHHHHHhc---
Confidence 5543221 11122333 3344444454444443332221 12578999999999999999999864
Q ss_pred CceEEEecCCCCHHHHH-----HHHHHhhc----CC-------CcEEEeccccccccCCCCccEEEEecCCCChhhHHhh
Q psy15524 684 NIAFFKLHGSMSQSERT-----EVFKTFRS----VK-------SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747 (930)
Q Consensus 684 ~~~~~~lhg~~~~~~R~-----~v~~~F~~----~~-------~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr 747 (930)
++ ..+||+|++.+|. .+++.|++ |. ..|||||+++++||||+. ++||++..| .+.|+||
T Consensus 296 g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQR 370 (844)
T TIGR02621 296 KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQR 370 (844)
T ss_pred CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHH
Confidence 44 7789999999999 88999987 43 679999999999999987 888887766 6899999
Q ss_pred hcccccCCCCceE-EEEeCc
Q psy15524 748 VGRTARVGHEGSS-LLFLIP 766 (930)
Q Consensus 748 ~GRagR~g~~g~~-~~~~~~ 766 (930)
+||+||.|+.|.+ +.++.+
T Consensus 371 iGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 371 FGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCCCCCCCceEEEEee
Confidence 9999999986444 555533
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.6e-40 Score=397.08 Aligned_cols=324 Identities=20% Similarity=0.260 Sum_probs=248.6
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEE
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 471 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~li 471 (930)
.+......+.+.++|. +||+|.+||+.++++ .|.+++||||||||.+|++|++..+.. |.+++|
T Consensus 436 ~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlv 505 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAV 505 (926)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEE
Confidence 3456667777778995 999999999999985 799999999999999999999988754 678999
Q ss_pred EccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH---HHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 472 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 472 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
++||++||.|+++.+++++..++ +.+..++|+...... ...+.. .++|+|+||. ++ . ..+.+++++++|
T Consensus 506 LvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll---~--~~v~f~~L~llV 578 (926)
T TIGR00580 506 LVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKELASGKIDILIGTHK-LL---Q--KDVKFKDLGLLI 578 (926)
T ss_pred EeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH-Hh---h--CCCCcccCCEEE
Confidence 99999999999999999887665 345566676543332 233444 4899999994 22 2 345688999999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
+||+|++.. .....+ .....+.|+++||||+.+....+......++..+....... ..+..
T Consensus 579 IDEahrfgv-----~~~~~L---~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R-----------~~V~t 639 (926)
T TIGR00580 579 IDEEQRFGV-----KQKEKL---KELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR-----------LPVRT 639 (926)
T ss_pred eecccccch-----hHHHHH---HhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc-----------cceEE
Confidence 999998532 122223 33345789999999998876666666666776665433210 11233
Q ss_pred EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 628 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
.+...... .+...+..... .+++++|||++++.++.+++.|.+.++ +..+..+||+|++.+|..++++|+
T Consensus 640 ~v~~~~~~----~i~~~i~~el~-----~g~qv~if~n~i~~~e~l~~~L~~~~p-~~~v~~lHG~m~~~eRe~im~~F~ 709 (926)
T TIGR00580 640 FVMEYDPE----LVREAIRRELL-----RGGQVFYVHNRIESIEKLATQLRELVP-EARIAIAHGQMTENELEEVMLEFY 709 (926)
T ss_pred EEEecCHH----HHHHHHHHHHH-----cCCeEEEEECCcHHHHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHHHHH
Confidence 33222211 11122221111 167999999999999999999988654 678889999999999999999999
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
+|+.+|||||+++++|+|+|++++||++++|. +..+|.||+||+||.|+.|.|++++.+.
T Consensus 710 ~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 710 KGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred cCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999999999999999999999875 6789999999999999999999998653
No 47
>KOG0329|consensus
Probab=100.00 E-value=4.3e-42 Score=328.03 Aligned_cols=325 Identities=25% Similarity=0.469 Sum_probs=276.2
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
+..|.+| -|.|++++++-. .||+.|+.+|..+||...-|-|++++|..|.|||.+|.+..++.+.. ..+...
T Consensus 41 ssgfrdf-llkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v~g~vs 112 (387)
T KOG0329|consen 41 SSGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------VDGQVS 112 (387)
T ss_pred ccchhhh-hcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------CCCeEE
Confidence 3578898 899999999985 79999999999999999999999999999999999999999987753 234577
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++++|.|||||-|+..+...+.+..+...+..+.||...+.....+.+.++|+|+||||++.+.++ +.++++++..+|+
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvl 191 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVL 191 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeeh
Confidence 999999999999999999999999999999999999999888888888899999999999999887 7889999999999
Q ss_pred ecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 549 DEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 549 DEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
||+|.+++. ...++++.|.+..+ .+.|++.||||+++++....+.++++|..|-+.++.. .....+.|
T Consensus 192 DEcdkmle~lDMrRDvQEifr~tp---~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~K--------LtLHGLqQ 260 (387)
T KOG0329|consen 192 DECDKMLEQLDMRRDVQEIFRMTP---HEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAK--------LTLHGLQQ 260 (387)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCc---ccceeeeeeeecchhhHHHHHhhhcCchhhhccchhh--------hhhhhHHH
Confidence 999998864 35667777766554 4789999999999999999999999998887765532 23356888
Q ss_pred EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 628 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
+|+......|...+..+|...- -.+++||+.+... ++ |
T Consensus 261 ~YvkLke~eKNrkl~dLLd~Le-------FNQVvIFvKsv~R------------------------l~----------f- 298 (387)
T KOG0329|consen 261 YYVKLKENEKNRKLNDLLDVLE-------FNQVVIFVKSVQR------------------------LS----------F- 298 (387)
T ss_pred HHHhhhhhhhhhhhhhhhhhhh-------hcceeEeeehhhh------------------------hh----------h-
Confidence 8888887777777777665431 4588999887643 00 3
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH-HHHHHHHhc
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV-KLVEELQNR 778 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~-~~~~~l~~~ 778 (930)
..+ +|||++++||+|+-.|+.|++||+|.+.++|+||+|||||.|..|.++.|++..+. ..+..++.+
T Consensus 299 --~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdR 367 (387)
T KOG0329|consen 299 --QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDR 367 (387)
T ss_pred --hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHh
Confidence 223 89999999999999999999999999999999999999999999999999987554 466666553
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=375.14 Aligned_cols=350 Identities=22% Similarity=0.284 Sum_probs=272.6
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
-|+|.+.+.+.+. |.+|||.|.+|||.+.+|+|+++.||||||||+++.+|++..+.+.. +....+|..+|||+|.|
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLK 83 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHH
Confidence 5799999999863 99999999999999999999999999999999999999999998753 22235689999999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-CcccccceEEEEecchhhh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~~~~~l~~lVlDEah~l~ 555 (930)
+|..++...+...+...+..+ ..-+|++......+...+.++|+|+||+.|.-++...+ .-.+.+++++|+||+|.+.
T Consensus 84 ALn~Di~~rL~~~~~~~G~~v-~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~ 162 (814)
T COG1201 84 ALNNDIRRRLEEPLRELGIEV-AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA 162 (814)
T ss_pred HHHHHHHHHHHHHHHHcCCcc-ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhh
Confidence 999999999999988776544 66677766655555566779999999999987776532 2258999999999999999
Q ss_pred hcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCC--CEE-EEccCCCCcccCccceecCCCceEEEEEc
Q psy15524 556 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQN--PIQ-IDAADSTDIHNTTDSLVIPDSLKQHFIVT 632 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~--~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (930)
+.-.+..+..-+++|....++.|.+++|||..+ ....++..... +.. +.+........ ....|....... -.
T Consensus 163 ~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~~i---~v~~p~~~~~~~-~~ 237 (814)
T COG1201 163 ESKRGVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKLEI---KVISPVEDLIYD-EE 237 (814)
T ss_pred ccccchhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcceE---EEEecCCccccc-cc
Confidence 888888888888888887778999999999975 33444444333 333 22222211000 001111000000 01
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
........+...+.+ ...+|||+||+..++.++..|.+... ..+..+||+++.+.|..++++|++|+.+
T Consensus 238 ~~~~~~~~i~~~v~~---------~~ttLIF~NTR~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lr 306 (814)
T COG1201 238 LWAALYERIAELVKK---------HRTTLIFTNTRSGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELK 306 (814)
T ss_pred hhHHHHHHHHHHHhh---------cCcEEEEEeChHHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCce
Confidence 111233334444432 45899999999999999999998753 5677779999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC-CCCceEEEEeCc
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV-GHEGSSLLFLIP 766 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~-g~~g~~~~~~~~ 766 (930)
++|||+.++-|||+.+|+.|||+..|.+....+||+||+|+. |....++++...
T Consensus 307 avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 307 AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999999999964 555777777776
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-40 Score=368.01 Aligned_cols=337 Identities=22% Similarity=0.312 Sum_probs=258.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+...|++.||+..+++-|.++|..+++|+|+++.+|||+||++||.+|++-. .| -+|||+|..+|...
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G-~TLVVSPLiSLM~D 72 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EG-LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CC-CEEEECchHHHHHH
Confidence 3456778899999999999999999999999999999999999999999832 23 58999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 557 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~ 557 (930)
+.+.++..+. .+.++.+.-+... ....+. ...++++-+|+++..--.. ..+.-..+.++||||||++.+|
T Consensus 73 QV~~l~~~Gi-----~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 73 QVDQLEAAGI-----RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHHHHHcCc-----eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhc
Confidence 9999988663 2333333322222 222233 3389999999998432111 1223456899999999999999
Q ss_pred C--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhc--CCCEEEEccCCCCcccCccceecCCCceEEEEEc-
Q psy15524 558 G--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTL--QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT- 632 (930)
Q Consensus 558 g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 632 (930)
| |++.+.++-......+ +.+++++|||.++.+..-+...+ .++..+...-. . .++.......
T Consensus 147 GhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd-----------R-pNi~~~v~~~~ 213 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD-----------R-PNLALKVVEKG 213 (590)
T ss_pred CCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC-----------C-chhhhhhhhcc
Confidence 9 9899888877766544 88999999999998766544333 34322221110 0 1111111111
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
....+.. ++... .....+..||||.|++.++.+++.|... |+.+..|||+|+.++|..+.++|..++..
T Consensus 214 ~~~~q~~----fi~~~----~~~~~~~GIIYc~sRk~~E~ia~~L~~~---g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 214 EPSDQLA----FLATV----LPQLSKSGIIYCLTRKKVEELAEWLRKN---GISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred cHHHHHH----HHHhh----ccccCCCeEEEEeeHHhHHHHHHHHHHC---CCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 1122222 44321 1122667899999999999999999985 89999999999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCC
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRI 780 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~ 780 (930)
|+|||.++++|||.|+|++|||||+|.|++.|+|.+|||||+|.+..|++++.+.+....+++.+..-
T Consensus 283 iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 283 VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999988887766543
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.6e-39 Score=383.27 Aligned_cols=332 Identities=21% Similarity=0.276 Sum_probs=243.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.+.+.+.+.++| +||++|++|++.+..+ .+++++||||||||++|++|++..+.. |.+++|++|
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lilaP 318 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMAP 318 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEec
Confidence 445556667888 5999999999999986 379999999999999999999988753 778999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||.|+++.+++++...+ +.+.+++|+..... ....+.. .++|+|+||+++.+ ...+++++++|+||
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE 391 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDE 391 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEec
Confidence 99999999999999987654 45778888876433 2334444 49999999998743 24578899999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
+|++.... .. .+.......++++||||+.+....+......+...+...... ...+...+.
T Consensus 392 ~Hrfg~~q-----r~---~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~-----------r~~i~~~~~ 452 (681)
T PRK10917 392 QHRFGVEQ-----RL---ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPG-----------RKPITTVVI 452 (681)
T ss_pred hhhhhHHH-----HH---HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCC-----------CCCcEEEEe
Confidence 99874221 11 122223367899999998776544443222233332211110 112333222
Q ss_pred EcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchh--------hHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH
Q psy15524 631 VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD--------MADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702 (930)
Q Consensus 631 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~--------~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v 702 (930)
... +...+...+..... .+.+++|||+..+ .++.+++.|.+.+. ++.+..+||+|++.+|..+
T Consensus 453 --~~~-~~~~~~~~i~~~~~-----~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~-~~~v~~lHG~m~~~eR~~i 523 (681)
T PRK10917 453 --PDS-RRDEVYERIREEIA-----KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP-ELRVGLLHGRMKPAEKDAV 523 (681)
T ss_pred --Ccc-cHHHHHHHHHHHHH-----cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC-CCcEEEEeCCCCHHHHHHH
Confidence 222 22333444444332 2679999999654 45566777776543 4778899999999999999
Q ss_pred HHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeC-c---ccHHHHHHHHh
Q psy15524 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLI-P---SEVKLVEELQN 777 (930)
Q Consensus 703 ~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~-~---~e~~~~~~l~~ 777 (930)
+++|++|+.+|||||+++++|+|+|++++||+++.|. ....|.||+||+||.|..|.|++++. + .....++.+.+
T Consensus 524 ~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 524 MAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred HHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 57888899999999999999999995 4 23334555543
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.6e-39 Score=394.89 Aligned_cols=321 Identities=19% Similarity=0.237 Sum_probs=246.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc
Q psy15524 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473 (930)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~ 473 (930)
....+.+.+.|+| .+|++|.+||+.++.+ .|++++|+||+|||.+|+.+++..+. .|.+++||+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLv 656 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLV 656 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEe
Confidence 3455556667898 7999999999999987 89999999999999999988887653 378899999
Q ss_pred cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHH---h-cCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI---R-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 474 PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~---~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||.|+++.|.+.+..++ +.+.+++|+.....+...+ . .+++|+|+||+.+ . ..+.+++++++|||
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVID 729 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVD 729 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEe
Confidence 999999999999998876654 3455677776655444332 2 3589999999643 2 23567899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|+|++ |+.. ... +...++++|+++||||+++....++...+.++..+....... ..+.+.+
T Consensus 730 Eahrf---G~~~--~e~---lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r-----------~~v~~~~ 790 (1147)
T PRK10689 730 EEHRF---GVRH--KER---IKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR-----------LAVKTFV 790 (1147)
T ss_pred chhhc---chhH--HHH---HHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC-----------CCceEEE
Confidence 99997 3322 222 333345889999999998888888888888888776533211 1123332
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
........... .+.... .+++++|||++++.++.+++.|.+.++ +..+..+||+|++.+|..++.+|++|
T Consensus 791 ~~~~~~~~k~~---il~el~------r~gqv~vf~n~i~~ie~la~~L~~~~p-~~~v~~lHG~m~q~eRe~im~~Fr~G 860 (1147)
T PRK10689 791 REYDSLVVREA---ILREIL------RGGQVYYLYNDVENIQKAAERLAELVP-EARIAIGHGQMRERELERVMNDFHHQ 860 (1147)
T ss_pred EecCcHHHHHH---HHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCC-CCcEEEEeCCCCHHHHHHHHHHHHhc
Confidence 22222111111 122111 157899999999999999999988753 56788899999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCC-CChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAP-SSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p-~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
+.+|||||++++||+|+|++++||..+.+ .+..+|+||+||+||.|+.|.|++++.+
T Consensus 861 k~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999999999999999966543 4677899999999999999999998854
No 52
>KOG0952|consensus
Probab=100.00 E-value=1.7e-39 Score=365.70 Aligned_cols=387 Identities=22% Similarity=0.274 Sum_probs=295.6
Q ss_pred cCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCc-ccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRP-KISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~-~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.|+|.+++.+|+.++|.++.. .|++||||||||||..|++.|++.+..... .....++.+++||+|+++||.++++.|
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 479999999999999999965 679999999999999999999999986322 222356789999999999999999999
Q ss_pred HHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC--CcccccceEEEEecchhhhhcCcHHHHH
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE--TLKFSKVEHLVLDEADRILDQGYERDIA 564 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~--~~~~~~l~~lVlDEah~l~~~g~~~~l~ 564 (930)
.+.+.+++ +.+.-++|+....... ...++|+|+||++|+-..+++. .-.++.+++|||||+|.+-| ..++.++
T Consensus 185 ~kkl~~~g-i~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLG-ISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLE 259 (1230)
T ss_pred hhhccccc-ceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHH
Confidence 98887666 4566788887655443 2468999999999987766543 22467899999999997754 4577777
Q ss_pred HHHHHHh----hcCccceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEEEEcCch---h
Q psy15524 565 EFLEILK----KQKPQFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK---L 636 (930)
Q Consensus 565 ~i~~~l~----~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 636 (930)
.|+.+.. ......++|++|||+|+ ..+++.+.-.||. -+. ..+....|..+.+.++-.+.. .
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glf---------sFd~~yRPvpL~~~~iG~k~~~~~~ 329 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLF---------SFDQRYRPVPLTQGFIGIKGKKNRQ 329 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCcccee---------eecccccccceeeeEEeeecccchh
Confidence 7776665 44568899999999997 5555555444421 111 112234566677777655544 1
Q ss_pred hHH----HHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhh----------------------cCCCceEEEe
Q psy15524 637 RLV----ALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV----------------------LGENIAFFKL 690 (930)
Q Consensus 637 ~~~----~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~----------------------~~~~~~~~~l 690 (930)
... ...+.+.+... .+.+++|||.++..+...++.|.+. +..|+.++
T Consensus 330 ~~~~~d~~~~~kv~e~~~-----~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iH-- 402 (1230)
T KOG0952|consen 330 QKKNIDEVCYDKVVEFLQ-----EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIH-- 402 (1230)
T ss_pred hhhhHHHHHHHHHHHHHH-----cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhc--
Confidence 111 11111112111 2789999999998887777666433 22244544
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEec----CC------CChhhHHhhhcccccCCC--Cc
Q psy15524 691 HGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT----AP------SSSTDYVHRVGRTARVGH--EG 758 (930)
Q Consensus 691 hg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~----~p------~s~~~y~qr~GRagR~g~--~g 758 (930)
|++|..++|..+++.|..|.++||+||..+++|+|+|+.-+||-.. .. ....+.+|..|||||++. .|
T Consensus 403 hAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G 482 (1230)
T KOG0952|consen 403 HAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSG 482 (1230)
T ss_pred ccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCc
Confidence 9999999999999999999999999999999999999988888533 22 256789999999999865 68
Q ss_pred eEEEEeCcccHHHHHHHHhcCCccchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHH
Q psy15524 759 SSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSF 822 (930)
Q Consensus 759 ~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (930)
.++++.+.+-...+..|....-++++.-+..++++|++++..|.++. ++++.+|+...+
T Consensus 483 ~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~-----VdeAVeWL~yTy 541 (1230)
T KOG0952|consen 483 EGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTN-----VDEAVEWLKYTY 541 (1230)
T ss_pred eEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeec-----HHHHHHHhhcee
Confidence 89998888888889999888889999999999999999988888764 788888987655
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.4e-39 Score=393.45 Aligned_cols=325 Identities=21% Similarity=0.236 Sum_probs=224.3
Q ss_pred EEccCCCchhHHhhHHHHHHHHhhCcc----cCCCCCeeEEEEccCHHHHHHHHHHHHHhhc-----------cCCCcce
Q psy15524 434 VRSQTGSGKTLAYAIPIIQKLQEMRPK----ISRKDGIYAVIILPTRELALQTLEIFTKLCK-----------SFTWIVP 498 (930)
Q Consensus 434 v~a~TGsGKTl~~~lp~l~~l~~~~~~----~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~-----------~~~~~~~ 498 (930)
|+||||||||+||.+|+++.+...... .....+.++|||+|+++|+.|+++.++..+. ....+.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998763211 0113468999999999999999998875321 1123567
Q ss_pred EEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc-Cccc
Q psy15524 499 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ-KPQF 577 (930)
Q Consensus 499 ~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~-~~~~ 577 (930)
...+|+.......+.+.+.++|+|+|||+|..++.+.....++++++|||||+|.+.+..++..+...++.+... ..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 778888877666666667899999999999988765333468999999999999999776666555555555543 3468
Q ss_pred eEEEEccccCHHHHHHHhhhcC-CCEEEEccCCCCcccCccceecCC-CceEEEEE----cC------chhhHHHHHHHH
Q psy15524 578 QSILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPD-SLKQHFIV----TP------PKLRLVALASFI 645 (930)
Q Consensus 578 q~vl~SAT~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~------~~~~~~~l~~~l 645 (930)
|++++|||+++ ..+++..... +|..+........ ... ...+|. ........ .. .......+...+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~r~-~~l-~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAMRH-PQI-RIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCCcc-cce-EEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 3555544332 3554432111100 000 011110 00000000 00 000000111111
Q ss_pred HhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC------------------------------CceEEEecCCCC
Q psy15524 646 LGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE------------------------------NIAFFKLHGSMS 695 (930)
Q Consensus 646 ~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------------------------~~~~~~lhg~~~ 695 (930)
..... ...++||||+|+..++.++..|++.... ...+..+||+|+
T Consensus 238 l~~i~-----~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLS 312 (1490)
T PRK09751 238 LDEVL-----RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS 312 (1490)
T ss_pred HHHHh-----cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCC
Confidence 11111 1568999999999999999888765310 122567899999
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 696 ~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
+++|..+++.|++|+.++||||+++++|||+++|++|||++.|.+..+|+||+|||||. ..|.+..++.+.
T Consensus 313 keeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~ 383 (1490)
T PRK09751 313 KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999996 334443334443
No 54
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.5e-38 Score=368.50 Aligned_cols=344 Identities=18% Similarity=0.205 Sum_probs=242.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+.+|+ .|+++|..+++.+++|+ +++++||+|||++|++|++..... |.+++|++||++||.|
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~q 134 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKR 134 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHH
Confidence 44555556677 89999999999988876 999999999999999999866553 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~ 555 (930)
.++.+.+++..++ +.++++.||.+...+++ ...+++|+|+||+++ .|+++.. ....++.+.++|+||||+++
T Consensus 135 d~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 135 DAEEMGQVYEFLG-LTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHHHHHHhhcC-CeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999998765 56778888877433433 446799999999999 5544432 12356889999999999986
Q ss_pred -h---------------cCcHHHHHHHHHHHhhc-----CccceEEEEccccCHHHH-----------------HHHhh-
Q psy15524 556 -D---------------QGYERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQ-----------------RLAGM- 596 (930)
Q Consensus 556 -~---------------~g~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~-----------------~l~~~- 596 (930)
| ..+......++..+... ....+.+.++..-...++ .+...
T Consensus 213 iDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~A 292 (790)
T PRK09200 213 LDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILA 292 (790)
T ss_pred eccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHH
Confidence 1 11223344444444321 112233333332000000 00000
Q ss_pred -----hc-CCCEEEE-------ccCC---------------------------------------------------CCc
Q psy15524 597 -----TL-QNPIQID-------AADS---------------------------------------------------TDI 612 (930)
Q Consensus 597 -----~~-~~~~~i~-------~~~~---------------------------------------------------~~~ 612 (930)
.+ .+-.++- +... .-.
T Consensus 293 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGT 372 (790)
T PRK09200 293 LRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGT 372 (790)
T ss_pred HHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCC
Confidence 00 1110100 0000 000
Q ss_pred ----------ccCccceecCCCce------EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 613 ----------HNTTDSLVIPDSLK------QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 613 ----------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
........+|.... ...+......|..++...+..... .+.++||||+|++.++.+++.
T Consensus 373 a~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~-----~~~pvLIf~~t~~~se~l~~~ 447 (790)
T PRK09200 373 AKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHE-----TGRPVLIGTGSIEQSETFSKL 447 (790)
T ss_pred ChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHH
Confidence 00011122332221 122345667788888887765321 278999999999999999999
Q ss_pred HhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCC---CCcc-----EEEEecCCCChhhHHhhh
Q psy15524 677 LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDL---PLVD-----WIVQYTAPSSSTDYVHRV 748 (930)
Q Consensus 677 l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDi---p~v~-----~VI~~~~p~s~~~y~qr~ 748 (930)
|.+. |+.+..+||++.+.++..+..+++.| .|+||||+++||+|+ |+|. +||+++.|.+...|+||+
T Consensus 448 L~~~---gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~ 522 (790)
T PRK09200 448 LDEA---GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLR 522 (790)
T ss_pred HHHC---CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhh
Confidence 9885 89999999999999999888888877 599999999999999 7998 999999999999999999
Q ss_pred cccccCCCCceEEEEeCcccH
Q psy15524 749 GRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 749 GRagR~g~~g~~~~~~~~~e~ 769 (930)
|||||.|.+|.++.|++.+|.
T Consensus 523 GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 523 GRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccccCCCCCeeEEEEEcchHH
Confidence 999999999999999997655
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=4.7e-38 Score=370.50 Aligned_cols=321 Identities=21% Similarity=0.271 Sum_probs=232.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccC
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 475 (930)
....+.+.++| +||++|++||+.++.+ .+.+++||||||||++|++|++..+.. |.+++|++||
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlilaPT 293 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMAPT 293 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEECCH
Confidence 34444456888 7999999999999976 258999999999999999999988753 6789999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEecc
Q psy15524 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551 (930)
Q Consensus 476 reLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEa 551 (930)
++||.|+++.+++++...+ +.+.+++|+..... ....+.. .++|+|+||+.+.+ ...+.+++++|+||+
T Consensus 294 ~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQ 366 (630)
T ss_pred HHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEech
Confidence 9999999999999987654 45677888876543 2333333 47999999998753 245788999999999
Q ss_pred hhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEE
Q psy15524 552 DRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 631 (930)
Q Consensus 552 h~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (930)
|++..... ..+...... ....++++||||+.+....+......+...+...... ...+...+
T Consensus 367 H~fg~~qr----~~l~~~~~~-~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~-----------r~~i~~~~-- 428 (630)
T TIGR00643 367 HRFGVEQR----KKLREKGQG-GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPG-----------RKPITTVL-- 428 (630)
T ss_pred hhccHHHH----HHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCC-----------CCceEEEE--
Confidence 98643211 112222111 1257899999998765433322111111111110000 01122222
Q ss_pred cCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchh--------hHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHH
Q psy15524 632 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD--------MADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 632 ~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~--------~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~ 703 (930)
.....+ ..+...+..... .+.+++|||+.++ .++.+++.|.+.+ .+..+..+||+|++.+|..++
T Consensus 429 ~~~~~~-~~~~~~i~~~l~-----~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~ 501 (630)
T TIGR00643 429 IKHDEK-DIVYEFIEEEIA-----KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVM 501 (630)
T ss_pred eCcchH-HHHHHHHHHHHH-----hCCcEEEEEccccccccchHHHHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHH
Confidence 222222 334444443322 1678999998764 4556667776654 467888999999999999999
Q ss_pred HHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEe
Q psy15524 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFL 764 (930)
Q Consensus 704 ~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~ 764 (930)
++|++|+.+|||||+++++|+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++
T Consensus 502 ~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 502 EEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999999999999999999999999999986 6788889999999999999999999
No 56
>KOG0330|consensus
Probab=100.00 E-value=2.5e-39 Score=328.20 Aligned_cols=246 Identities=34% Similarity=0.517 Sum_probs=223.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.||++|+++||.++.|+|+|+.|.||||||.+|++|+++++...+ ..++++||+||||||.|+.+.++.+
T Consensus 79 l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p------~~~~~lVLtPtRELA~QI~e~fe~L 152 (476)
T KOG0330|consen 79 LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP------KLFFALVLTPTRELAQQIAEQFEAL 152 (476)
T ss_pred hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC------CCceEEEecCcHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999998733 2478999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+.++.||.+...+...+.+.|||+|+||++|.+++.+.+.+.+..++++|+||||+++++.|.+.+.+|+..
T Consensus 153 g~~ig-lr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 153 GSGIG-LRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKV 231 (476)
T ss_pred ccccC-eEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHh
Confidence 88777 88889999999999999999999999999999999999889999999999999999999999998888877766
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. .+|+++||||++.
T Consensus 232 ip~----------------------------------------------------------------erqt~LfsATMt~ 247 (476)
T KOG0330|consen 232 IPR----------------------------------------------------------------ERQTFLFSATMTK 247 (476)
T ss_pred cCc----------------------------------------------------------------cceEEEEEeecch
Confidence 642 3499999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+.++...-+++|..+.+.... ...+++.|.|.+++.++|...|+.+| +...+.++|||||+..
T Consensus 248 kv~kL~rasl~~p~~v~~s~ky---------~tv~~lkQ~ylfv~~k~K~~yLV~ll-------~e~~g~s~iVF~~t~~ 311 (476)
T KOG0330|consen 248 KVRKLQRASLDNPVKVAVSSKY---------QTVDHLKQTYLFVPGKDKDTYLVYLL-------NELAGNSVIVFCNTCN 311 (476)
T ss_pred hhHHHHhhccCCCeEEeccchh---------cchHHhhhheEeccccccchhHHHHH-------HhhcCCcEEEEEeccc
Confidence 9999999889999999776655 45688999999999999999999999 4567789999999999
Q ss_pred chhhhHHHHhhhh
Q psy15524 321 MADYHTELLSTKK 333 (930)
Q Consensus 321 ~~~~l~~~L~~~~ 333 (930)
+++.++-.|+..|
T Consensus 312 tt~~la~~L~~lg 324 (476)
T KOG0330|consen 312 TTRFLALLLRNLG 324 (476)
T ss_pred hHHHHHHHHHhcC
Confidence 9999999998765
No 57
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.2e-37 Score=357.12 Aligned_cols=335 Identities=18% Similarity=0.173 Sum_probs=229.9
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
++|+|.|+++.+..+++.+++++||+|||++|++|++..... |..++|++||++||.|+++.+..++..++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 566666666666666668999999999999999998766653 55799999999999999999999998776
Q ss_pred CcceEEEeCCC---chHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhhhcC-------
Q psy15524 495 WIVPSWLTGGE---KMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRILDQG------- 558 (930)
Q Consensus 495 ~~~~~~~~gg~---~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~~~g------- 558 (930)
.. +++..++. ....+.++...+++|+|+||++| .+.++.. ....++.+.++|+||||.++-..
T Consensus 140 Ls-v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 140 LT-VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred Cc-EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 54 44444441 23344455557899999999999 5555321 23457889999999999986211
Q ss_pred ---------cHHHHHHHHHHHhhc-----CccceEEEEccccCHHHHHHH-----------------------hh-hcCC
Q psy15524 559 ---------YERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQRLA-----------------------GM-TLQN 600 (930)
Q Consensus 559 ---------~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~~l~-----------------------~~-~~~~ 600 (930)
+......++..|... ....+.+.+|..-...++.+. .. +.++
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 222333444444321 012233444322111111110 00 0111
Q ss_pred CEEEE-------ccCC---------------------------------------------------CCc----------
Q psy15524 601 PIQID-------AADS---------------------------------------------------TDI---------- 612 (930)
Q Consensus 601 ~~~i~-------~~~~---------------------------------------------------~~~---------- 612 (930)
-.++- +... .-.
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 11100 0000 000
Q ss_pred ccCccceecCCCceE------EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCce
Q psy15524 613 HNTTDSLVIPDSLKQ------HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686 (930)
Q Consensus 613 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~ 686 (930)
-.......+|..... ..+......|..++...+..... .+.++||||+|++.++.++..|.+. |++
T Consensus 379 iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~-----~~~pvLIft~s~~~se~ls~~L~~~---gi~ 450 (762)
T TIGR03714 379 TYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHE-----TGQPVLLITGSVEMSEIYSELLLRE---GIP 450 (762)
T ss_pred HhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhh-----CCCCEEEEECcHHHHHHHHHHHHHC---CCC
Confidence 000111233332221 13455667788888887765422 2679999999999999999999875 889
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC---------CccEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP---------LVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 687 ~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip---------~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
+..+||++.+.+|..+.++|+.| .|+||||+++||+||| ++.+|+++++|....+ +||+|||||.|.+
T Consensus 451 ~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~ 527 (762)
T TIGR03714 451 HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDP 527 (762)
T ss_pred EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCc
Confidence 99999999999999988888877 5999999999999999 9999999999998777 9999999999999
Q ss_pred ceEEEEeCcccHH
Q psy15524 758 GSSLLFLIPSEVK 770 (930)
Q Consensus 758 g~~~~~~~~~e~~ 770 (930)
|.++.|++.+|.-
T Consensus 528 G~s~~~is~eD~l 540 (762)
T TIGR03714 528 GSSQFFVSLEDDL 540 (762)
T ss_pred eeEEEEEccchhh
Confidence 9999999986653
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.8e-37 Score=354.26 Aligned_cols=316 Identities=17% Similarity=0.164 Sum_probs=229.2
Q ss_pred HHHHHhHHhhhcCCcEEEEccCCCchhHH---------hhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 417 TVQQLSIQPILDGGDVLVRSQTGSGKTLA---------YAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 417 ~iQ~~~i~~il~~~d~lv~a~TGsGKTl~---------~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
.+|+++++.+++|+|+++.|+||||||.+ |++|.+..+....+ ...+..++|++||||||.|+...+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~---~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP---NFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc---ccCCcEEEEECcHHHHHHHHHHHHH
Confidence 46999999999999999999999999997 55555555432110 1235689999999999999999988
Q ss_pred Hhhcc--CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHH
Q psy15524 488 KLCKS--FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565 (930)
Q Consensus 488 ~~~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~ 565 (930)
+..+. +....+...+||... .......++.+|+++|++.. ...++++++|||||||.+...+ +.+..
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHH
Confidence 76643 233445667888652 22222234679999997621 1247889999999999988776 33333
Q ss_pred HHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc----------h
Q psy15524 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP----------K 635 (930)
Q Consensus 566 i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 635 (930)
++..+.. ..+|+++||||+++++..+ ..++.+|..+.+.... ...+.+.|..... .
T Consensus 313 llk~~~~--~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt-----------~~pV~~~yi~~~~~~~~~~~y~~~ 378 (675)
T PHA02653 313 VARKHID--KIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGT-----------LFPISEVYVKNKYNPKNKRAYIEE 378 (675)
T ss_pred HHHHhhh--hcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCc-----------CCCeEEEEeecCcccccchhhhHH
Confidence 4333221 2359999999999888777 4677888877764321 1223444432211 1
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh-hcCCCcEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF-RSVKSGVL 714 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F-~~~~~~vL 714 (930)
.+. .+...+.... ...++.+|||++++++++.+++.|.+.. .++.+..+||+|++. ++++++| ++|+.+||
T Consensus 379 ~k~-~~l~~L~~~~----~~~~g~iLVFlpg~~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kIL 450 (675)
T PHA02653 379 EKK-NIVTALKKYT----PPKGSSGIVFVASVSQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKNPSII 450 (675)
T ss_pred HHH-HHHHHHHHhh----cccCCcEEEEECcHHHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCceeEE
Confidence 111 1222222111 1125689999999999999999998753 258899999999975 5667777 68999999
Q ss_pred EeccccccccCCCCccEEEEec---CCC---------ChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 715 ICTDVAARGLDLPLVDWIVQYT---APS---------SSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 715 v~T~~~~~GlDip~v~~VI~~~---~p~---------s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
||||+++||+|+|+|++||++| .|. |.++|+||+|||||. ++|.|+.|+++++.
T Consensus 451 VATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 451 ISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred eccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 9999999999999999999998 565 888999999999999 79999999998875
No 59
>KOG0348|consensus
Probab=100.00 E-value=9.2e-39 Score=335.46 Aligned_cols=280 Identities=51% Similarity=0.793 Sum_probs=242.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+....++..+..|+++|||+||||||.|+++.++++
T Consensus 155 m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred hccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
...+.|+..+.+.||+..+....++++++.|||+||+||++++.+...+.+.++++||+||+|++++-||+.++..|+..
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~ 314 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKA 314 (708)
T ss_pred hcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+...... ....+..+..+|.++.|||++.
T Consensus 315 v~~~~~~---------------------------------------------------e~~~~~lp~q~q~mLlSATLtd 343 (708)
T KOG0348|consen 315 VHSIQNA---------------------------------------------------ECKDPKLPHQLQNMLLSATLTD 343 (708)
T ss_pred Hhhccch---------------------------------------------------hcccccccHHHHhHhhhhhhHH
Confidence 8542200 0000111223489999999999
Q ss_pred HHHHhhhccccCCeeeccCCccccc----------------CCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhcccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIH----------------NTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 304 (930)
.+.+|++..+.+|++|..+.+.+.. ..-+.+.+|+.+.|+|.++|.+-++.+|..+|.+.++
T Consensus 344 ~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k-- 421 (708)
T KOG0348|consen 344 GVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVK-- 421 (708)
T ss_pred HHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhh--
Confidence 9999999999999999733221110 0123478999999999999999999999999977544
Q ss_pred ccCCcceEEEEEecccchhhhHHHHhhhhh
Q psy15524 305 NEDEESKMLVFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 305 ~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~ 334 (930)
.....++|||.++.+.++.-+++++..-.
T Consensus 422 -~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 422 -FEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred -hhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 33445999999999999999999986543
No 60
>KOG0331|consensus
Probab=100.00 E-value=1.4e-38 Score=346.32 Aligned_cols=257 Identities=33% Similarity=0.495 Sum_probs=228.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.||+.|||+|.+.||.+++|+|++.+|.||||||++|++|++.++..........+++.+|||+||||||.|+.+.+.++
T Consensus 109 ~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 109 QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999987544445567899999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+..+. +...|++||.....|...+.++++|+|+||+||++++.. +.+.++++.|+|+||||+|++.||+++++.|++.
T Consensus 189 ~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~ 266 (519)
T KOG0331|consen 189 GKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQ 266 (519)
T ss_pred cCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHhhhccccHHHHHHHHHh
Confidence 98766 779999999999999999999999999999999999987 7889999999999999999999999999999987
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. .+|+++||||||.
T Consensus 267 i~~~---------------------------------------------------------------~rQtlm~saTwp~ 283 (519)
T KOG0331|consen 267 IPRP---------------------------------------------------------------DRQTLMFSATWPK 283 (519)
T ss_pred cCCC---------------------------------------------------------------cccEEEEeeeccH
Confidence 7322 1299999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.++.++..++.+|..+.+.... .+....++.|.+..|+...|...|..+|... ....++++||||+|++
T Consensus 284 ~v~~lA~~fl~~~~~i~ig~~~-------~~~a~~~i~qive~~~~~~K~~~l~~lL~~~----~~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 284 EVRQLAEDFLNNPIQINVGNKK-------ELKANHNIRQIVEVCDETAKLRKLGKLLEDI----SSDSEGKVIIFCETKR 352 (519)
T ss_pred HHHHHHHHHhcCceEEEecchh-------hhhhhcchhhhhhhcCHHHHHHHHHHHHHHH----hccCCCcEEEEecchh
Confidence 9999999999999988776542 1233567899999999888999998888653 2456789999999999
Q ss_pred chhhhHHHHhhhh
Q psy15524 321 MADYHTELLSTKK 333 (930)
Q Consensus 321 ~~~~l~~~L~~~~ 333 (930)
.|+.++..|+..+
T Consensus 353 ~~~~l~~~l~~~~ 365 (519)
T KOG0331|consen 353 TCDELARNLRRKG 365 (519)
T ss_pred hHHHHHHHHHhcC
Confidence 9999999998765
No 61
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.9e-37 Score=350.14 Aligned_cols=334 Identities=19% Similarity=0.200 Sum_probs=247.0
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++....+|+ .|+++|..++|.++.|+ |++|+||+|||++|.+|++..... |..++|++||++||.|
T Consensus 92 ~rEa~~R~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~q 159 (656)
T PRK12898 92 VREASGRVLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAER 159 (656)
T ss_pred HHHHHHHHhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHH
Confidence 33444445565 68899999999999999 999999999999999999987643 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccC------------------------
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE------------------------ 536 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~------------------------ 536 (930)
.++.+.+++..++ +.+++++||.+. +.++...+++|+|+|++.+ .|.|+..-
T Consensus 160 dae~~~~l~~~lG-lsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (656)
T PRK12898 160 DAELMRPLYEALG-LTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRST 236 (656)
T ss_pred HHHHHHHHHhhcC-CEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchh
Confidence 9999999998765 567788888653 4555667899999999887 55554321
Q ss_pred CcccccceEEEEecchhhh-h-----------------cCcHHHHHHHHHHHhhc-----Cc------------------
Q psy15524 537 TLKFSKVEHLVLDEADRIL-D-----------------QGYERDIAEFLEILKKQ-----KP------------------ 575 (930)
Q Consensus 537 ~~~~~~l~~lVlDEah~l~-~-----------------~g~~~~l~~i~~~l~~~-----~~------------------ 575 (930)
....+.+.+.|+||+|.++ | ..+......+...+... ..
T Consensus 237 ~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~ 316 (656)
T PRK12898 237 QLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAEL 316 (656)
T ss_pred hhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHH
Confidence 1224668999999999875 0 01111111221111100 00
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 576 -------------------------------------------------------------------------------- 575 (930)
Q Consensus 576 -------------------------------------------------------------------------------- 575 (930)
T Consensus 317 ~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~ 396 (656)
T PRK12898 317 AESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETL 396 (656)
T ss_pred hCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceee
Confidence
Q ss_pred -----------cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHH
Q psy15524 576 -----------QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644 (930)
Q Consensus 576 -----------~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (930)
-.+..+||||.+....++...+..+++.|...... . ....+.++.++...|...+...
T Consensus 397 a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~----------~-r~~~~~~v~~t~~~K~~aL~~~ 465 (656)
T PRK12898 397 ARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS----------Q-RRHLPDEVFLTAAAKWAAVAAR 465 (656)
T ss_pred eeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc----------c-ceecCCEEEeCHHHHHHHHHHH
Confidence 12455667777666666666666666555443321 0 1122345667777888888888
Q ss_pred HHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccc
Q psy15524 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGL 724 (930)
Q Consensus 645 l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~Gl 724 (930)
+..... .+.++||||+|++.++.+++.|.+. |+.+..+||++.+.++. +..|+.+...|+||||+++||+
T Consensus 466 i~~~~~-----~~~pvLIft~t~~~se~L~~~L~~~---gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGt 535 (656)
T PRK12898 466 VRELHA-----QGRPVLVGTRSVAASERLSALLREA---GLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGT 535 (656)
T ss_pred HHHHHh-----cCCCEEEEeCcHHHHHHHHHHHHHC---CCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhccc
Confidence 765321 1568999999999999999999885 89999999997655544 4455555556999999999999
Q ss_pred CCC---Ccc-----EEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHH
Q psy15524 725 DLP---LVD-----WIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771 (930)
Q Consensus 725 Dip---~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~ 771 (930)
||+ +|. +||+++.|.+...|+||+|||||.|.+|.++.|++.+|.-+
T Consensus 536 DI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 536 DIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred CcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 999 776 99999999999999999999999999999999999866533
No 62
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.2e-36 Score=342.81 Aligned_cols=344 Identities=19% Similarity=0.205 Sum_probs=238.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+.+|+ .|+++|..+.+.++.|+ +++++||+|||++|.+|++-.... |..+.|++||++||.|
T Consensus 45 vrEa~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~q 112 (745)
T TIGR00963 45 VREASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQR 112 (745)
T ss_pred HHHHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHH
Confidence 33444455665 67888888888877666 999999999999999999644443 5569999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccC-----CcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE-----TLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~l~ 555 (930)
.++.+.+++..++ +.+++++||.+... ++....++|+|+||++| .++++... ...++.+.++|+||+|+++
T Consensus 113 dae~~~~l~~~LG-Lsv~~i~g~~~~~~--r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 113 DAEWMGQVYRFLG-LSVGLILSGMSPEE--RREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred HHHHHHHHhccCC-CeEEEEeCCCCHHH--HHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 9999999998766 56778888877543 33345689999999999 88887642 3467899999999999987
Q ss_pred h-cC---------------cHHHHHHHHHHHhhc-----CccceEEEEccccCHHHHHH-----------------Hh--
Q psy15524 556 D-QG---------------YERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQRL-----------------AG-- 595 (930)
Q Consensus 556 ~-~g---------------~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~~l-----------------~~-- 595 (930)
- .. .......|.+.|... ....+.+.++..=-..++.+ ..
T Consensus 190 IDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~A 269 (745)
T TIGR00963 190 IDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNA 269 (745)
T ss_pred HHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHH
Confidence 3 11 111222333333211 01122333332100001110 00
Q ss_pred ----h-hcCCCEEE-------EccCC---------------------------------------------------CC-
Q psy15524 596 ----M-TLQNPIQI-------DAADS---------------------------------------------------TD- 611 (930)
Q Consensus 596 ----~-~~~~~~~i-------~~~~~---------------------------------------------------~~- 611 (930)
. +..+-.++ -+... .-
T Consensus 270 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGT 349 (745)
T TIGR00963 270 LKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGT 349 (745)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCC
Confidence 0 00111010 00000 00
Q ss_pred c---------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 612 I---------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 612 ~---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
. -...+...+|...... .+......|..++...+..... .+.++||||+|++.++.+++.
T Consensus 350 a~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~-----~grpvLV~t~si~~se~ls~~ 424 (745)
T TIGR00963 350 AKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHA-----KGQPVLVGTTSVEKSELLSNL 424 (745)
T ss_pred cHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHH
Confidence 0 0001122333332221 1233445677777776654322 278999999999999999999
Q ss_pred HhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCC-------ccEEEEecCCCChhhHHhhhc
Q psy15524 677 LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL-------VDWIVQYTAPSSSTDYVHRVG 749 (930)
Q Consensus 677 l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~-------v~~VI~~~~p~s~~~y~qr~G 749 (930)
|.+. |+++..+||+ +.+|+..+.+|+.+...|+|||++++||+||+. ..+||+++.|.|...|.||+|
T Consensus 425 L~~~---gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~G 499 (745)
T TIGR00963 425 LKER---GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRG 499 (745)
T ss_pred HHHc---CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhc
Confidence 9885 8888999998 889999999999999999999999999999988 559999999999999999999
Q ss_pred ccccCCCCceEEEEeCcccHH
Q psy15524 750 RTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 750 RagR~g~~g~~~~~~~~~e~~ 770 (930)
||||.|.+|.+..|++.++.-
T Consensus 500 RtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 500 RSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred cccCCCCCcceEEEEeccHHH
Confidence 999999999999999987653
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.3e-36 Score=360.02 Aligned_cols=310 Identities=17% Similarity=0.224 Sum_probs=231.2
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+..+.++++++++|+||||||.+|.+|+++... .+.+++|+.|||++|.|+++.+.+.........+++
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 44455667889999999999999999999997652 245899999999999999999865554332334555
Q ss_pred EeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecch-hhhhcCcHHH-HHHHHHHHhhcCccce
Q psy15524 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERD-IAEFLEILKKQKPQFQ 578 (930)
Q Consensus 501 ~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah-~l~~~g~~~~-l~~i~~~l~~~~~~~q 578 (930)
.+++.+. ...+.+|+|+|||+|++++.+ ...++++++|||||+| +.++..+.-. +..+...+ +++.|
T Consensus 80 ~vr~~~~------~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l---r~dlq 148 (819)
T TIGR01970 80 RVRGENK------VSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSL---REDLK 148 (819)
T ss_pred EEccccc------cCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhc---CCCce
Confidence 5555432 234578999999999998876 3468999999999999 5777655422 23333333 35789
Q ss_pred EEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHH-HHHHHHHhhccCCCcCCC
Q psy15524 579 SILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLV-ALASFILGKCQNVNEDEE 657 (930)
Q Consensus 579 ~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~ 657 (930)
+++||||++... ...++.++..+...+.. ..+.+.|.......++. .+...+...... ..
T Consensus 149 lIlmSATl~~~~---l~~~l~~~~vI~~~gr~------------~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~----~~ 209 (819)
T TIGR01970 149 ILAMSATLDGER---LSSLLPDAPVVESEGRS------------FPVEIRYLPLRGDQRLEDAVSRAVEHALAS----ET 209 (819)
T ss_pred EEEEeCCCCHHH---HHHHcCCCcEEEecCcc------------eeeeeEEeecchhhhHHHHHHHHHHHHHHh----cC
Confidence 999999998753 23455555444432211 12445555554444332 122222222211 15
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecC
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTA 737 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~ 737 (930)
+.+|||++++++++.+++.|.+.+..++.+..+||+|++++|..+++.|++|+.+||||||++++|||||+|++||+++.
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl 289 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGL 289 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCc
Confidence 78999999999999999999875545789999999999999999999999999999999999999999999999999998
Q ss_pred CC------------------ChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 738 PS------------------SSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 738 p~------------------s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
|. |..+|.||.|||||. .+|.|+.++++.+..
T Consensus 290 ~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 290 ARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred ccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 74 334689999999999 799999999877653
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1e-36 Score=373.04 Aligned_cols=306 Identities=21% Similarity=0.270 Sum_probs=231.6
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
+.+.+.+|+ .|+++|..++|.++.|+|++++||||||||. |.+|+...+.. .+.+++||+|||+|+.|++
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHHHH
Confidence 345556788 8999999999999999999999999999996 56666554432 3788999999999999999
Q ss_pred HHHHHhhccCCCcceEEEeCCCch-----HHHHHHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh-
Q psy15524 484 EIFTKLCKSFTWIVPSWLTGGEKM-----KSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD- 556 (930)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~- 556 (930)
+.+++++...+.. +..+.|+... ......+. .+++|+|+|||+|.+++. .+...+++++|+||||++++
T Consensus 141 ~~l~~l~~~~~~~-~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 141 EKLEKFGEKVGCG-VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHHHHHhhhcCce-EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhc
Confidence 9999998765533 3444544331 22233344 358999999999999876 24556799999999999996
Q ss_pred ----------cCcH-HHHHHHHHHHhhc---------------------CccceEEEEccccCHH-HHHHHhhhcCCCEE
Q psy15524 557 ----------QGYE-RDIAEFLEILKKQ---------------------KPQFQSILLSATLTPA-VQRLAGMTLQNPIQ 603 (930)
Q Consensus 557 ----------~g~~-~~l~~i~~~l~~~---------------------~~~~q~vl~SAT~~~~-~~~l~~~~~~~~~~ 603 (930)
+||. +.+..+++.++.. ....|++++|||+++. +.. ..+.++..
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~ 293 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLG 293 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccce
Confidence 7884 6777777666531 1167999999999874 332 12234433
Q ss_pred EEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhh---HHHHHHHHhhh
Q psy15524 604 IDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDM---ADYHTELLSTV 680 (930)
Q Consensus 604 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~---~~~~~~~l~~~ 680 (930)
+.+.... .....+.+.|+.++ .+...+..++... +.++||||++++. ++.+++.|...
T Consensus 294 ~~v~~~~---------~~~rnI~~~yi~~~--~k~~~L~~ll~~l--------~~~~LIFv~t~~~~~~ae~l~~~L~~~ 354 (1176)
T PRK09401 294 FEVGSPV---------FYLRNIVDSYIVDE--DSVEKLVELVKRL--------GDGGLIFVPSDKGKEYAEELAEYLEDL 354 (1176)
T ss_pred EEecCcc---------cccCCceEEEEEcc--cHHHHHHHHHHhc--------CCCEEEEEecccChHHHHHHHHHHHHC
Confidence 4433221 12345677777665 4555566665432 4589999999887 89999888875
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEe----ccccccccCCCC-ccEEEEecCCC------ChhhHHhhhc
Q psy15524 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLIC----TDVAARGLDLPL-VDWIVQYTAPS------SSTDYVHRVG 749 (930)
Q Consensus 681 ~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~----T~~~~~GlDip~-v~~VI~~~~p~------s~~~y~qr~G 749 (930)
|+.+..+||+| + ..+++|++|+.+|||| ||+++||||+|+ |++||+||+|. ..+.|.||+|
T Consensus 355 ---gi~v~~~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~ 426 (1176)
T PRK09401 355 ---GINAELAISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLL 426 (1176)
T ss_pred ---CCcEEEEeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHH
Confidence 89999999999 2 2359999999999999 699999999999 89999999998 6788999999
Q ss_pred cccc
Q psy15524 750 RTAR 753 (930)
Q Consensus 750 RagR 753 (930)
|+..
T Consensus 427 r~~~ 430 (1176)
T PRK09401 427 RLLS 430 (1176)
T ss_pred HHHh
Confidence 9963
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=353.80 Aligned_cols=351 Identities=23% Similarity=0.298 Sum_probs=257.6
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhh-cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il-~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
+++.+.+.+. ..++.++.+-|+.++...+ +++|+++++|||||||+.+++.+++.+.+ .+.++|||+|++
T Consensus 16 ~~~~v~~i~~-~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivPlk 86 (766)
T COG1204 16 LDDRVLEILK-GDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVPLK 86 (766)
T ss_pred ccHHHHHHhc-cCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeChH
Confidence 5555555554 5688777777777766655 56999999999999999999999999976 267899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
+||.|.++.|+ .+..++ +.+...+|+.....+. ..+++|+|+||++|...+++... .+..+++||+||+|.+.+
T Consensus 87 ALa~Ek~~~~~-~~~~~G-irV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 87 ALAEEKYEEFS-RLEELG-IRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred HHHHHHHHHhh-hHHhcC-CEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCC
Confidence 99999999999 333344 4667778887654432 25799999999999999988655 678999999999999998
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchh
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (930)
...+..++.|+..+.......|++++|||+|+ ..+++.+.-.++........ ....+....+.+.......
T Consensus 161 ~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~--------~l~~~v~~~~~~~~~~~~~ 231 (766)
T COG1204 161 RTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPV--------PLRRGVPYVGAFLGADGKK 231 (766)
T ss_pred cccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCc--------ccccCCccceEEEEecCcc
Confidence 88899999999999888778999999999987 44555544433331111111 1111122233333222111
Q ss_pred ------hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc-----------------------------
Q psy15524 637 ------RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL----------------------------- 681 (930)
Q Consensus 637 ------~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~----------------------------- 681 (930)
+.......+..... .+++++|||+|+..+...+..+....
T Consensus 232 k~~~~~~~~~~~~~v~~~~~-----~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (766)
T COG1204 232 KTWPLLIDNLALELVLESLA-----EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSED 306 (766)
T ss_pred ccccccchHHHHHHHHHHHh-----cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccch
Confidence 22333333333222 27899999999999988877776311
Q ss_pred -------CCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec-----CCCChhhHH
Q psy15524 682 -------GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT-----APSSSTDYV 745 (930)
Q Consensus 682 -------~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~-----~p~s~~~y~ 745 (930)
..|+. .+|++|+.++|..+++.|+.|.++|||||+++++|+|+|+-++||- |+ .+.+..+|+
T Consensus 307 ~~l~e~v~~Gva--fHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~ 384 (766)
T COG1204 307 EELAELVLRGVA--FHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVL 384 (766)
T ss_pred HHHHHHHHhCcc--ccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHh
Confidence 11444 4599999999999999999999999999999999999999888883 55 556788999
Q ss_pred hhhcccccCCCC--ceEEEEe-CcccHHHHHHHHhcC
Q psy15524 746 HRVGRTARVGHE--GSSLLFL-IPSEVKLVEELQNRR 779 (930)
Q Consensus 746 qr~GRagR~g~~--g~~~~~~-~~~e~~~~~~l~~~~ 779 (930)
||.|||||.|-+ |.++++. +..+..++.......
T Consensus 385 QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~ 421 (766)
T COG1204 385 QMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQS 421 (766)
T ss_pred hccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhcc
Confidence 999999999975 6677777 344445555554443
No 66
>KOG0349|consensus
Probab=100.00 E-value=2.6e-37 Score=315.76 Aligned_cols=302 Identities=27% Similarity=0.429 Sum_probs=231.6
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCC--CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccce
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFT--WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVE 544 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~ 544 (930)
+.++|+-|+|||+.|++..++++-.... .....++.||...+.+...+..|.+|+|+||||+++.+.. ....+.+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 5679999999999999997776654332 2333467888888889999999999999999999998875 667789999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCc---cceEEEEccccCH-HHHHHHhhhcCCCEEEEccCCCCcccCcccee
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKP---QFQSILLSATLTP-AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~---~~q~vl~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 620 (930)
++|+||||.++..|+.+.+.++...++...+ ..|.+++|||+.. ++..+....+.-|..++.......
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~v-------- 437 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLV-------- 437 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccccc--------
Confidence 9999999999999999999999888876543 5789999999864 356666677777888877655322
Q ss_pred cCCCceEEEEEcCch------------------------------hhHHHHHHHHHhh-c-cCCCcCCCceEEEEecchh
Q psy15524 621 IPDSLKQHFIVTPPK------------------------------LRLVALASFILGK-C-QNVNEDEESKMLVFMATQD 668 (930)
Q Consensus 621 ~~~~~~~~~~~~~~~------------------------------~~~~~l~~~l~~~-~-~~~~~~~~~k~iVF~~s~~ 668 (930)
|+...+....+.++ .-...-..+++.. + .........++||||.|..
T Consensus 438 -petvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~ 516 (725)
T KOG0349|consen 438 -PETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQ 516 (725)
T ss_pred -chhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccc
Confidence 12222111111110 0000111111100 0 0000112468999999999
Q ss_pred hHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhh
Q psy15524 669 MADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748 (930)
Q Consensus 669 ~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~ 748 (930)
.|+.+.+++.+..+..+.+.++||+..+.+|.+.++.|+.+..+.|||||+++||+||.++-.+|+...|.+...|+||+
T Consensus 517 dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhri 596 (725)
T KOG0349|consen 517 DCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRI 596 (725)
T ss_pred cchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhh
Confidence 99999999998877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceEEEEeCcc-cHHHHHHHHhc
Q psy15524 749 GRTARVGHEGSSLLFLIPS-EVKLVEELQNR 778 (930)
Q Consensus 749 GRagR~g~~g~~~~~~~~~-e~~~~~~l~~~ 778 (930)
||.||+.+-|.++.++... |.-++.-...+
T Consensus 597 grvgraermglaislvat~~ekvwyh~c~sr 627 (725)
T KOG0349|consen 597 GRVGRAERMGLAISLVATVPEKVWYHWCKSR 627 (725)
T ss_pred hccchhhhcceeEEEeeccchheeehhhhcc
Confidence 9999999999999888753 44344444443
No 67
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.7e-36 Score=375.04 Aligned_cols=336 Identities=19% Similarity=0.252 Sum_probs=249.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
+..+.+.+.+|| +|+++|++++|.+++|+|+++.||||||||++++++++... ..|.++|||+||++|+.
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---------~~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---------LKGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---------hcCCeEEEEECHHHHHH
Confidence 445566666899 69999999999999999999999999999997666655432 13678999999999999
Q ss_pred HHHHHHHHhhccCCC-cceEEEeCCCchHHHH---HHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 481 QTLEIFTKLCKSFTW-IVPSWLTGGEKMKSEK---ARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 481 Q~~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~---~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
|+++.++.++...+. ..+..+.|+....... ..+..+ ++|+|+|||+|.+++... ...+++++|+||||+++
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---KHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---hhCCCCEEEEECceecc
Confidence 999999998876542 3445667776654432 334444 899999999998876542 12679999999999998
Q ss_pred h-----------cCcHHHHHH-HHHHHh----------------------hcCccce-EEEEccccCHHHHHHHhhhcCC
Q psy15524 556 D-----------QGYERDIAE-FLEILK----------------------KQKPQFQ-SILLSATLTPAVQRLAGMTLQN 600 (930)
Q Consensus 556 ~-----------~g~~~~l~~-i~~~l~----------------------~~~~~~q-~vl~SAT~~~~~~~l~~~~~~~ 600 (930)
+ +||.+++.. +++.++ ..+...| ++++|||+++.... . ..+++
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~-~-~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDR-V-KLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHH-H-HHhhc
Confidence 6 588877753 222211 1123445 57799999863111 1 22355
Q ss_pred CEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhH---HHHHHHH
Q psy15524 601 PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA---DYHTELL 677 (930)
Q Consensus 601 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~---~~~~~~l 677 (930)
+..+.+.... .....+.+.|+.+....+ ..+..++... +..+||||+|++.+ +.+++.|
T Consensus 292 ~l~f~v~~~~---------~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--------g~~gIVF~~t~~~~e~ae~la~~L 353 (1638)
T PRK14701 292 LLGFEVGSGR---------SALRNIVDVYLNPEKIIK-EHVRELLKKL--------GKGGLIFVPIDEGAEKAEEIEKYL 353 (1638)
T ss_pred CeEEEecCCC---------CCCCCcEEEEEECCHHHH-HHHHHHHHhC--------CCCeEEEEeccccchHHHHHHHHH
Confidence 6555553321 122456777776655544 4555555432 45789999998865 7788888
Q ss_pred hhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec----cccccccCCCC-ccEEEEecCCC---ChhhHHhhh-
Q psy15524 678 STVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT----DVAARGLDLPL-VDWIVQYTAPS---SSTDYVHRV- 748 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T----~~~~~GlDip~-v~~VI~~~~p~---s~~~y~qr~- 748 (930)
... |+.+..+||+ |..++++|++|+.+||||| ++++||||+|+ |++||+||+|. +.+.|.|..
T Consensus 354 ~~~---Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~ 425 (1638)
T PRK14701 354 LED---GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIY 425 (1638)
T ss_pred HHC---CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchh
Confidence 874 8999999995 8899999999999999999 59999999999 99999999999 888777766
Q ss_pred ------------cccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 749 ------------GRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 749 ------------GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
||+||.|.++.+++...+....+++.+..
T Consensus 426 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 426 RILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred hhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhc
Confidence 99999999888886666666666666543
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.5e-36 Score=355.80 Aligned_cols=310 Identities=18% Similarity=0.241 Sum_probs=229.2
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+..+.++++++++||||||||.+|.+|+++... .+.+++|+.|||++|.|+++.+.+.........+++
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 34455667899999999999999999999986531 124799999999999999999876554433445666
Q ss_pred EeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchh-hhhcCcHHHHHHHHHHHhhcCccceE
Q psy15524 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-ILDQGYERDIAEFLEILKKQKPQFQS 579 (930)
Q Consensus 501 ~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-l~~~g~~~~l~~i~~~l~~~~~~~q~ 579 (930)
.+++.+... ....|+|+|||+|++++.. ...++++++|||||+|. .++..+. +..+.+.+...+++.|+
T Consensus 83 ~vr~~~~~~------~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~--L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 83 RMRAESKVG------PNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLA--LALLLDVQQGLRDDLKL 152 (812)
T ss_pred EecCccccC------CCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchH--HHHHHHHHHhCCccceE
Confidence 777654322 3467999999999998875 34689999999999995 3433221 11122223333458899
Q ss_pred EEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHH-HHHHHHHhhccCCCcCCCc
Q psy15524 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLV-ALASFILGKCQNVNEDEES 658 (930)
Q Consensus 580 vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~ 658 (930)
++||||++.. .+ ..++.++..+...+.. -.+.+.|...+...+.. .+...+...... ..+
T Consensus 153 ilmSATl~~~--~l-~~~~~~~~~I~~~gr~------------~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g 213 (812)
T PRK11664 153 LIMSATLDND--RL-QQLLPDAPVIVSEGRS------------FPVERRYQPLPAHQRFDEAVARATAELLRQ----ESG 213 (812)
T ss_pred EEEecCCCHH--HH-HHhcCCCCEEEecCcc------------ccceEEeccCchhhhHHHHHHHHHHHHHHh----CCC
Confidence 9999999864 23 3455555444433211 12455565555444443 122222222211 257
Q ss_pred eEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCC
Q psy15524 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAP 738 (930)
Q Consensus 659 k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p 738 (930)
.+|||+++.++++.+++.|.+....++.+..+||+|++.+|..+++.|++|+.+||||||++++|||||+|++||+++.+
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~ 293 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLE 293 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCc
Confidence 89999999999999999998755457889999999999999999999999999999999999999999999999998866
Q ss_pred C------------------ChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 739 S------------------SSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 739 ~------------------s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
. |..+|.||.|||||. .+|.|+.++++.+.
T Consensus 294 r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 294 RVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred ccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 4 345899999999998 69999999997655
No 69
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=314.47 Aligned_cols=346 Identities=21% Similarity=0.279 Sum_probs=275.5
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
...++| ++|+.....|. ..|++.+.|+|..++.. +++|+|.+|.++|+|||||+..++=+..++. .|.+
T Consensus 194 ~~vdeL-dipe~fk~~lk-~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~K 263 (830)
T COG1202 194 VPVDEL-DIPEKFKRMLK-REGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKK 263 (830)
T ss_pred cccccc-CCcHHHHHHHH-hcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCe
Confidence 346778 89999999987 47999999999999987 7789999999999999999999998888874 4778
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH----HHHHhcCCcEEEECchhHHHhhhccCCcccccce
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE----KARIRKGISILVATPGRLLDHCKHTETLKFSKVE 544 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~----~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~ 544 (930)
.|+++|..+||+|-++.|+..+...+..+ ..-.|-...+.. .......+||||+|.+-+..+++.. -.+.++.
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~Lglkv-airVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiG 340 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKV-AIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIG 340 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceE-EEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--Ccccccc
Confidence 99999999999999999999988776543 333333221111 1112235899999999998887753 5689999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCC
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 624 (930)
.+||||+|.+-+...+.-+.-++.+++...+..|++.+|||+.+. ..+++..-.+++..+ ..|-+
T Consensus 341 tVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~--------------~RPVp 405 (830)
T COG1202 341 TVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD--------------ERPVP 405 (830)
T ss_pred eEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec--------------CCCCC
Confidence 999999999988888888899999999888899999999999763 455655544444332 13456
Q ss_pred ceEEEEEcC-chhhHHHHHHHHHhhccCC-CcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH
Q psy15524 625 LKQHFIVTP-PKLRLVALASFILGKCQNV-NEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702 (930)
Q Consensus 625 ~~~~~~~~~-~~~~~~~l~~~l~~~~~~~-~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v 702 (930)
+..+.+++. ...|...+..+.+...... ...-.+++|||+.|+..|..++..|.. +|+....+|++|+..+|..+
T Consensus 406 lErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~---kG~~a~pYHaGL~y~eRk~v 482 (830)
T COG1202 406 LERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTG---KGLKAAPYHAGLPYKERKSV 482 (830)
T ss_pred hhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhc---CCcccccccCCCcHHHHHHH
Confidence 777777777 4566666665555432221 122367999999999999999999986 48999999999999999999
Q ss_pred HHHhhcCCCcEEEeccccccccCCCCccEEE----EecCCCChhhHHhhhcccccCCC--CceEEEEeCc
Q psy15524 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIV----QYTAPSSSTDYVHRVGRTARVGH--EGSSLLFLIP 766 (930)
Q Consensus 703 ~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI----~~~~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~ 766 (930)
..+|.++++.++|+|.+++-|+|||+-.+|+ ...-..++.+|.||.|||||.+. .|..++++.|
T Consensus 483 E~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 483 ERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred HHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9999999999999999999999999876554 23345689999999999999987 5888888875
No 70
>KOG0352|consensus
Probab=100.00 E-value=5.4e-36 Score=306.11 Aligned_cols=344 Identities=20% Similarity=0.266 Sum_probs=253.7
Q ss_pred HHHHHHHhcCCCCCC-CHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 401 FMKKNLNEGMNITQV-TTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~-~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
.+.++|.+.||+..+ ++.|++|+..+..+ +||.|++|||+||+|||.+|.+-. +...||++|..+|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiAL 73 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIAL 73 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHH
Confidence 467788888999865 89999999999876 689999999999999999999832 3378999999999
Q ss_pred HHHHHHHHHHhhccCCCcceEEEeCCCchHH---HHHHHhcCCcEEEECchhHH-----HhhhccCCcccccceEEEEec
Q psy15524 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS---EKARIRKGISILVATPGRLL-----DHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 479 a~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~~~~~~~Ilv~Tp~rl~-----~~l~~~~~~~~~~l~~lVlDE 550 (930)
...+.+.+.++--....+...+ ....+.. ...+.+....|++-||+.-. +++.. ..+-.-+.++|+||
T Consensus 74 IkDQiDHL~~LKVp~~SLNSKl--St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 74 IKDQIDHLKRLKVPCESLNSKL--STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHHHhcCCchhHhcchh--hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEech
Confidence 9999999887643221111110 0111111 11222345679999998642 22211 11234589999999
Q ss_pred chhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHH--HhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 551 ADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL--AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 551 ah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
||++.+|| |.+++-.+- .|+...++...+.++||.++.+++- ....+.+|+.+--... --.
T Consensus 150 AHCVSQWGHDFRPDYL~LG-~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~--------------FR~ 214 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLG-SLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT--------------FRD 214 (641)
T ss_pred hhhHhhhccccCcchhhhh-hHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc--------------hhh
Confidence 99999999 667766543 3444456889999999999987653 3445667765432211 111
Q ss_pred EEEEEcC----chhhHHHHHHHHHhhccCCC------cCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCH
Q psy15524 627 QHFIVTP----PKLRLVALASFILGKCQNVN------EDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696 (930)
Q Consensus 627 ~~~~~~~----~~~~~~~l~~~l~~~~~~~~------~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~ 696 (930)
..++.+. -.+-+..|.++-......+. ....+..||||.|++.++.++-.|... |++...+|+++..
T Consensus 215 NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---Gi~A~AYHAGLK~ 291 (641)
T KOG0352|consen 215 NLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA---GIPAMAYHAGLKK 291 (641)
T ss_pred hhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc---CcchHHHhccccc
Confidence 1111000 11223445555444332211 122467899999999999999888764 8999999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
.+|.++.++|.+++..|++||..+++|+|-|+|+.|||+++|.+..-|.|..|||||.|....|-++++..+..-++.|.
T Consensus 292 ~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 292 KERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred chhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888876
Q ss_pred hc
Q psy15524 777 NR 778 (930)
Q Consensus 777 ~~ 778 (930)
..
T Consensus 372 ~~ 373 (641)
T KOG0352|consen 372 SG 373 (641)
T ss_pred hh
Confidence 53
No 71
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.5e-34 Score=354.79 Aligned_cols=293 Identities=19% Similarity=0.269 Sum_probs=213.7
Q ss_pred HHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 404 ~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
+.+.+..|+ .|+++|+.++|.++.|+|++++||||||||+ |.+|+...+.. .+.+++||+|||+||.|++
T Consensus 69 ~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 69 EFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHHHHH
Confidence 334444454 7999999999999999999999999999997 67777766543 3678999999999999999
Q ss_pred HHHHHhhccCCCcc--eEEEeCCCchHHH---HHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh-
Q psy15524 484 EIFTKLCKSFTWIV--PSWLTGGEKMKSE---KARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD- 556 (930)
Q Consensus 484 ~~~~~~~~~~~~~~--~~~~~gg~~~~~~---~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~- 556 (930)
+.+.+++...+... .++++||...... ...+.+ +++|+|+|||+|.+++.... . +++++|+||||++++
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhc
Confidence 99999987554322 2346677665432 233444 49999999999998876521 2 899999999999998
Q ss_pred ----------cCcHHH-HHHHHHHH-------------------hhcCccce--EEEEccc-cCHHHHHHHhhhcCCCEE
Q psy15524 557 ----------QGYERD-IAEFLEIL-------------------KKQKPQFQ--SILLSAT-LTPAVQRLAGMTLQNPIQ 603 (930)
Q Consensus 557 ----------~g~~~~-l~~i~~~l-------------------~~~~~~~q--~vl~SAT-~~~~~~~l~~~~~~~~~~ 603 (930)
+||.++ +..++..+ ...+..+| ++++||| .|..+.. ..++++..
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccc
Confidence 788753 55554322 11222344 5678999 4554432 22344444
Q ss_pred EEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecch---hhHHHHHHHHhhh
Q psy15524 604 IDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ---DMADYHTELLSTV 680 (930)
Q Consensus 604 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~---~~~~~~~~~l~~~ 680 (930)
+.+.... .....+.+.|..... +...+..++... +.++||||+++ +.++.+++.|.+.
T Consensus 292 ~~v~~~~---------~~~r~I~~~~~~~~~--~~~~L~~ll~~l--------~~~~IVFv~t~~~~~~a~~l~~~L~~~ 352 (1171)
T TIGR01054 292 FEVGGGS---------DTLRNVVDVYVEDED--LKETLLEIVKKL--------GTGGIVYVSIDYGKEKAEEIAEFLENH 352 (1171)
T ss_pred eEecCcc---------ccccceEEEEEeccc--HHHHHHHHHHHc--------CCCEEEEEeccccHHHHHHHHHHHHhC
Confidence 4443221 123456677765443 233455555432 45799999999 9999999999874
Q ss_pred cCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEe----ccccccccCCCC-ccEEEEecCCC
Q psy15524 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLIC----TDVAARGLDLPL-VDWIVQYTAPS 739 (930)
Q Consensus 681 ~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~----T~~~~~GlDip~-v~~VI~~~~p~ 739 (930)
|+.+..+||+|++ .++++|++|+.+|||| ||+++||||+|+ |++||+||+|.
T Consensus 353 ---g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 353 ---GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 8899999999973 6899999999999999 599999999999 89999998773
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5.6e-35 Score=325.66 Aligned_cols=301 Identities=19% Similarity=0.199 Sum_probs=206.7
Q ss_pred cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch---
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM--- 507 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~--- 507 (930)
|+++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. ..+.+.|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHH
Confidence 68999999999999999999987653 34668999999999999999999998643 12222222110
Q ss_pred ---------HHHHHHH------hcCCcEEEECchhHHHhhhcc-CC--cccc--cceEEEEecchhhhhcCcHHHHHHHH
Q psy15524 508 ---------KSEKARI------RKGISILVATPGRLLDHCKHT-ET--LKFS--KVEHLVLDEADRILDQGYERDIAEFL 567 (930)
Q Consensus 508 ---------~~~~~~~------~~~~~Ilv~Tp~rl~~~l~~~-~~--~~~~--~l~~lVlDEah~l~~~g~~~~l~~i~ 567 (930)
....... ....+|+|+||+++...+... .. ..+. ..+++|+||+|.+.+.+++. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 0111111 123679999999998776541 11 1122 23789999999999876554 66666
Q ss_pred HHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc--CchhhHHHHHHHH
Q psy15524 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT--PPKLRLVALASFI 645 (930)
Q Consensus 568 ~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l 645 (930)
..+.. .+.|++++|||+|+.+.++.......+........ . ......+.+..+ ....+...+...+
T Consensus 149 ~~l~~--~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~ 216 (358)
T TIGR01587 149 EVLKD--NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-----E-----ERRFERHRFIKIESDKVGEISSLERLL 216 (358)
T ss_pred HHHHH--cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-----c-----ccccccccceeeccccccCHHHHHHHH
Confidence 66652 36899999999998777776554322111100000 0 000011222111 1123344444444
Q ss_pred HhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH----HHHhhcCCCcEEEeccccc
Q psy15524 646 LGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV----FKTFRSVKSGVLICTDVAA 721 (930)
Q Consensus 646 ~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v----~~~F~~~~~~vLv~T~~~~ 721 (930)
... . .++++||||+|++.++.+++.|.+... +..+..+||+|++.+|..+ ++.|++|+..|||||++++
T Consensus 217 ~~~-~-----~~~~~lVf~~t~~~~~~~~~~L~~~~~-~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~ 289 (358)
T TIGR01587 217 EFI-K-----KGGKIAIIVNTVDRAQEFYQQLKENAP-EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIE 289 (358)
T ss_pred HHh-h-----CCCeEEEEECCHHHHHHHHHHHHhhcC-CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchh
Confidence 321 1 167999999999999999999987532 2358889999999999764 8899999999999999999
Q ss_pred cccCCCCccEEEEecCCCChhhHHhhhcccccCCCCc----eEEEEeC
Q psy15524 722 RGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEG----SSLLFLI 765 (930)
Q Consensus 722 ~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g----~~~~~~~ 765 (930)
+|+|+| +++||++..| ++.|+||+||+||.|+.+ ..++|..
T Consensus 290 ~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 290 ASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred ceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 999996 8889988776 789999999999998643 4444444
No 73
>KOG0338|consensus
Probab=100.00 E-value=3e-36 Score=314.73 Aligned_cols=249 Identities=33% Similarity=0.522 Sum_probs=217.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..|||+|..+||.++.|+|++.||.||||||.+|++|+|.++.-...+ ....++|||+|||||+.|++...+++
T Consensus 199 lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVLVL~PTRELaiQv~sV~~ql 275 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVLVLVPTRELAIQVHSVTKQL 275 (691)
T ss_pred cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEEEEeccHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999998764433 34678999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.... +.+++..||-+...|...++.+|||+|+||+|+.+++.+...+.++++..+|+||||+|++.+|..++..|++.
T Consensus 276 aqFt~-I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~l 354 (691)
T KOG0338|consen 276 AQFTD-ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRL 354 (691)
T ss_pred Hhhcc-ceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHh
Confidence 88655 99999999999999999999999999999999999999999999999999999999999999998888777766
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+++.+ |+++|||||+.
T Consensus 355 cpk~R----------------------------------------------------------------QTmLFSATMte 370 (691)
T KOG0338|consen 355 CPKNR----------------------------------------------------------------QTMLFSATMTE 370 (691)
T ss_pred ccccc----------------------------------------------------------------cceeehhhhHH
Confidence 64433 99999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc---chhHHHHHHHHhhhccccccCCcceEEEEEe
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP---KLRLVALASFILGKCQNVNEDEESKMLVFMA 317 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~ 317 (930)
.+..|+...|..|+.|.+++... .+..+.|.|+.+.+ .++...|..++. ..-...+|||+.
T Consensus 371 eVkdL~slSL~kPvrifvd~~~~---------~a~~LtQEFiRIR~~re~dRea~l~~l~~-------rtf~~~~ivFv~ 434 (691)
T KOG0338|consen 371 EVKDLASLSLNKPVRIFVDPNKD---------TAPKLTQEFIRIRPKREGDREAMLASLIT-------RTFQDRTIVFVR 434 (691)
T ss_pred HHHHHHHhhcCCCeEEEeCCccc---------cchhhhHHHheeccccccccHHHHHHHHH-------HhcccceEEEEe
Confidence 99999999999999999887763 35667777776542 346666777763 233568999999
Q ss_pred cccchhhhHHHHhhhh
Q psy15524 318 TQDMADYHTELLSTKK 333 (930)
Q Consensus 318 s~~~~~~l~~~L~~~~ 333 (930)
|+.+|+.+.-.|.-.|
T Consensus 435 tKk~AHRl~IllGLlg 450 (691)
T KOG0338|consen 435 TKKQAHRLRILLGLLG 450 (691)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999988886554
No 74
>KOG0345|consensus
Probab=100.00 E-value=2.2e-35 Score=306.45 Aligned_cols=253 Identities=35% Similarity=0.548 Sum_probs=222.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.+||+|..+||.+++++|+++.|+||||||++|++|++..+.+.....+. ...-+|||+|||||+.|+.+.+..+
T Consensus 24 ~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~-~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 24 SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPP-GQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCc-cceeEEEecCcHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999664433222 2457999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhc-CCCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKH-TETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~-~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
...+..+.+.++.||....++...+. .++.|+||||+||.+++.+ ...++++++.++|+||||++++.||...+..|+
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~IL 182 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTIL 182 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHH
Confidence 99888889999999988887776655 5689999999999999987 356668899999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEeccc
Q psy15524 159 EILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~ 238 (930)
+.||+++ .+-+||||.
T Consensus 183 s~LPKQR----------------------------------------------------------------RTGLFSATq 198 (567)
T KOG0345|consen 183 SFLPKQR----------------------------------------------------------------RTGLFSATQ 198 (567)
T ss_pred Hhccccc----------------------------------------------------------------ccccccchh
Confidence 8887654 788999999
Q ss_pred chHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 239 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 239 ~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
++.+..+....++||+.+.+...... ..|+.+.-+|..|+...|...++++| ......++|||.+|
T Consensus 199 ~~~v~dL~raGLRNpv~V~V~~k~~~-------~tPS~L~~~Y~v~~a~eK~~~lv~~L-------~~~~~kK~iVFF~T 264 (567)
T KOG0345|consen 199 TQEVEDLARAGLRNPVRVSVKEKSKS-------ATPSSLALEYLVCEADEKLSQLVHLL-------NNNKDKKCIVFFPT 264 (567)
T ss_pred hHHHHHHHHhhccCceeeeecccccc-------cCchhhcceeeEecHHHHHHHHHHHH-------hccccccEEEEecC
Confidence 99999999999999999877665521 26888999999999999999999999 44667899999999
Q ss_pred ccchhhhHHHHhhh
Q psy15524 319 QDMADYHTELLSTK 332 (930)
Q Consensus 319 ~~~~~~l~~~L~~~ 332 (930)
...++.++..+...
T Consensus 265 CasVeYf~~~~~~~ 278 (567)
T KOG0345|consen 265 CASVEYFGKLFSRL 278 (567)
T ss_pred cchHHHHHHHHHHH
Confidence 99999999999876
No 75
>KOG0342|consensus
Probab=100.00 E-value=1.6e-35 Score=310.03 Aligned_cols=252 Identities=38% Similarity=0.614 Sum_probs=223.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||+++|++|+.+++.++.|+|+++.|.||+|||++|++|+++.+...+... .++..+||++||||||.|++.+++++
T Consensus 100 ~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~--r~~~~vlIi~PTRELA~Q~~~eak~L 177 (543)
T KOG0342|consen 100 MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP--RNGTGVLIICPTRELAMQIFAEAKEL 177 (543)
T ss_pred cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC--CCCeeEEEecccHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999998866654 36888999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
..+...+.+..+.||.+.......+.+++.|+|+||+||++++.+...+.+++++++|+||||++++.||+.++..|+..
T Consensus 178 l~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~ 257 (543)
T KOG0342|consen 178 LKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKI 257 (543)
T ss_pred HhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHh
Confidence 98886789999999999988888888899999999999999999988888899999999999999999999999988887
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. +|+++||||.++
T Consensus 258 lpk~----------------------------------------------------------------rqt~LFSAT~~~ 273 (543)
T KOG0342|consen 258 LPKQ----------------------------------------------------------------RQTLLFSATQPS 273 (543)
T ss_pred cccc----------------------------------------------------------------ceeeEeeCCCcH
Confidence 7533 399999999999
Q ss_pred HHHHhhhcccc-CCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.++.+++..+. +++.+...+.... .....+.|-|++++...+...+..+|.+ +....++||||+|.
T Consensus 274 kV~~l~~~~L~~d~~~v~~~d~~~~-------~The~l~Qgyvv~~~~~~f~ll~~~LKk------~~~~~KiiVF~sT~ 340 (543)
T KOG0342|consen 274 KVKDLARGALKRDPVFVNVDDGGER-------ETHERLEQGYVVAPSDSRFSLLYTFLKK------NIKRYKIIVFFSTC 340 (543)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCc-------chhhcccceEEeccccchHHHHHHHHHH------hcCCceEEEEechh
Confidence 99999987765 4788766655422 2346799999999988889999999954 22338999999999
Q ss_pred cchhhhHHHHhh
Q psy15524 320 DMADYHTELLST 331 (930)
Q Consensus 320 ~~~~~l~~~L~~ 331 (930)
..+..+++.|+.
T Consensus 341 ~~vk~~~~lL~~ 352 (543)
T KOG0342|consen 341 MSVKFHAELLNY 352 (543)
T ss_pred hHHHHHHHHHhh
Confidence 999999999983
No 76
>KOG0951|consensus
Probab=100.00 E-value=1.9e-33 Score=320.25 Aligned_cols=341 Identities=18% Similarity=0.216 Sum_probs=235.6
Q ss_pred CCCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 413 TQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
...+|+|.++++.+.+.+| +++.||+|||||.|+.++++. +....++++++|..+.+..++..|.+.++
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~ 1211 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFS 1211 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhc
Confidence 3458999999999998665 999999999999999998885 23467899999999999999999998887
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHH------HHH
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD------IAE 565 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~------l~~ 565 (930)
.........++|...... .+....+|+|+||++|..+ + ..+.+++.|.||+|.+.+.+ ++. +..
T Consensus 1212 ~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ 1281 (1674)
T KOG0951|consen 1212 KLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRY 1281 (1674)
T ss_pred cccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccC-CceEEEEeeHHH
Confidence 776666666666654432 2345679999999999765 2 56789999999999887322 222 223
Q ss_pred HHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc---hhhHHHHH
Q psy15524 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP---KLRLVALA 642 (930)
Q Consensus 566 i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ 642 (930)
|-..+. ...+++.+|..+.+. .++++. ...-.+..... ..|.++.-+...+.. ..+..++.
T Consensus 1282 ia~q~~---k~ir~v~ls~~lana-~d~ig~--s~~~v~Nf~p~----------~R~~Pl~i~i~~~~~~~~~~~~~am~ 1345 (1674)
T KOG0951|consen 1282 IASQLE---KKIRVVALSSSLANA-RDLIGA--SSSGVFNFSPS----------VRPVPLEIHIQSVDISHFESRMLAMT 1345 (1674)
T ss_pred HHHHHH---hheeEEEeehhhccc-hhhccc--cccceeecCcc----------cCCCceeEEEEEeccchhHHHHHHhh
Confidence 333333 378999999988763 333222 11111111111 122333333322222 22322222
Q ss_pred H----HHHhhccCCCcCCCceEEEEecchhhHHHHHHHH-----------------------hhhcCCCceEEEecCCCC
Q psy15524 643 S----FILGKCQNVNEDEESKMLVFMATQDMADYHTELL-----------------------STVLGENIAFFKLHGSMS 695 (930)
Q Consensus 643 ~----~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l-----------------------~~~~~~~~~~~~lhg~~~ 695 (930)
. .+..+.. .+++.+||+++++.+..++.-+ ++.+..|+. |-+++
T Consensus 1346 ~~~~~ai~~~a~-----~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg----~e~~s 1416 (1674)
T KOG0951|consen 1346 KPTYTAIVRHAG-----NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG----HEGLS 1416 (1674)
T ss_pred hhHHHHHHHHhc-----CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc----ccccC
Confidence 2 2222221 2789999999999997765322 121222333 88999
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec------CCCChhhHHhhhcccccCCCCceEEEEeC
Q psy15524 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT------APSSSTDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 696 ~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~------~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
..+...+-..|..|.+.|+|...- .+|+-...--+|+. || .+.+..+.+|++|+|.| .|.|++++.
T Consensus 1417 ~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1417 SNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCH 1492 (1674)
T ss_pred cchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEec
Confidence 999999999999999999988776 88888866555553 22 56678999999999998 679999999
Q ss_pred cccHHHHHHHHhcCCccchhchHHHHHhhhhhhccCc
Q psy15524 766 PSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGD 802 (930)
Q Consensus 766 ~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 802 (930)
.....|+++.....+|+++.--.-+.+.+++++..+.
T Consensus 1493 ~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~t 1529 (1674)
T KOG0951|consen 1493 TPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKT 1529 (1674)
T ss_pred CchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999988888877654455555555444333
No 77
>KOG0343|consensus
Probab=100.00 E-value=9.2e-36 Score=313.84 Aligned_cols=251 Identities=36% Similarity=0.600 Sum_probs=222.6
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
+|-.+|.+|+.+||.++.|+|+|..|.||||||++|++|+++.+.+. ++...+|.-+|||+||||||.|+++.+.+.+
T Consensus 88 ~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~--kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 88 KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL--KWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc--CCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999763 4445678889999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
.+.. +..+++.||.+......++. +..|+||||+||++++..+..+...++.++|+||||+|+++||...+..|++.+
T Consensus 166 k~h~-fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l 243 (758)
T KOG0343|consen 166 KHHD-FSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL 243 (758)
T ss_pred hccc-cccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC
Confidence 8655 88899999998776666554 589999999999999998888889999999999999999999998888888777
Q ss_pred hhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchH
Q psy15524 162 KKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~ 241 (930)
+..+ |+++||||-+..
T Consensus 244 P~~R----------------------------------------------------------------QTLLFSATqt~s 259 (758)
T KOG0343|consen 244 PKKR----------------------------------------------------------------QTLLFSATQTKS 259 (758)
T ss_pred Chhh----------------------------------------------------------------eeeeeecccchh
Confidence 5443 999999999999
Q ss_pred HHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccc
Q psy15524 242 VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDM 321 (930)
Q Consensus 242 ~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~ 321 (930)
+..+++.-+.+|.+|.+.... ..+.|+++.|.|+.++..+|+..|..++ ......++|||.+|.++
T Consensus 260 vkdLaRLsL~dP~~vsvhe~a-------~~atP~~L~Q~y~~v~l~~Ki~~L~sFI-------~shlk~K~iVF~SscKq 325 (758)
T KOG0343|consen 260 VKDLARLSLKDPVYVSVHENA-------VAATPSNLQQSYVIVPLEDKIDMLWSFI-------KSHLKKKSIVFLSSCKQ 325 (758)
T ss_pred HHHHHHhhcCCCcEEEEeccc-------cccChhhhhheEEEEehhhHHHHHHHHH-------HhccccceEEEEehhhH
Confidence 999999999999999877432 2257999999999999999999999999 55677899999999999
Q ss_pred hhhhHHHHhhhhh
Q psy15524 322 ADYHTELLSTKKK 334 (930)
Q Consensus 322 ~~~l~~~L~~~~~ 334 (930)
+..+++.++....
T Consensus 326 vkf~~e~F~rlrp 338 (758)
T KOG0343|consen 326 VKFLYEAFCRLRP 338 (758)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987543
No 78
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-35 Score=333.55 Aligned_cols=250 Identities=34% Similarity=0.538 Sum_probs=216.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|.++||.++.|+|++++|+||||||++|.+|+++.+... . ......+||++||||||.|+++.+..+
T Consensus 47 ~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~---~~~~~~aLil~PTRELA~Qi~~~~~~~ 122 (513)
T COG0513 47 LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-V---ERKYVSALILAPTRELAVQIAEELRKL 122 (513)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-c---ccCCCceEEECCCHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999997642 0 011111999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
......+.+..++||.....+...+..++||+||||+|+++++.+ +.+.+++++++|+||||.|++.||.+++..|+..
T Consensus 123 ~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~ 201 (513)
T COG0513 123 GKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDEADRMLDMGFIDDIEKILKA 201 (513)
T ss_pred HhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHh
Confidence 987745778899999999999988988999999999999999987 5888999999999999999999999998888876
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. .+|+++||||++.
T Consensus 202 ~p~----------------------------------------------------------------~~qtllfSAT~~~ 217 (513)
T COG0513 202 LPP----------------------------------------------------------------DRQTLLFSATMPD 217 (513)
T ss_pred CCc----------------------------------------------------------------ccEEEEEecCCCH
Confidence 643 2399999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcch-hHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.+..++..++.+|..+.+..... ......+.|.++.+.... |...|..++ ......++||||+|+
T Consensus 218 ~i~~l~~~~l~~p~~i~v~~~~~-------~~~~~~i~q~~~~v~~~~~k~~~L~~ll-------~~~~~~~~IVF~~tk 283 (513)
T COG0513 218 DIRELARRYLNDPVEIEVSVEKL-------ERTLKKIKQFYLEVESEEEKLELLLKLL-------KDEDEGRVIVFVRTK 283 (513)
T ss_pred HHHHHHHHHccCCcEEEEccccc-------cccccCceEEEEEeCCHHHHHHHHHHHH-------hcCCCCeEEEEeCcH
Confidence 99999999999998777663221 124678999999998766 999999999 344555799999999
Q ss_pred cchhhhHHHHhhhh
Q psy15524 320 DMADYHTELLSTKK 333 (930)
Q Consensus 320 ~~~~~l~~~L~~~~ 333 (930)
..|+.++..|...|
T Consensus 284 ~~~~~l~~~l~~~g 297 (513)
T COG0513 284 RLVEELAESLRKRG 297 (513)
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999999877
No 79
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.4e-34 Score=332.66 Aligned_cols=315 Identities=17% Similarity=0.177 Sum_probs=216.3
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
...|+++|.++++.++.+++.++++|||+|||+++...+ ..+.. ....++|||+||++|+.|+.+.+.+++.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~-------~~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE-------NYEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh-------cCCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999999999999765432 22222 1234799999999999999999998764
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
... .....+.||.... .+.+|+|+||+++.+... ..+++++++|+||||++.... +..++..++
T Consensus 184 ~~~-~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~ 247 (501)
T PHA02558 184 FPR-EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKS----LTSIITKLD 247 (501)
T ss_pred ccc-cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchh----HHHHHHhhh
Confidence 322 2233445554321 357999999999876432 236789999999999997644 445555553
Q ss_pred hcCccceEEEEccccCHHHHHHHh-hhcCCCEEEEccCCCCc--ccCc--c--ceec--CC----Cc-eEEE-----EEc
Q psy15524 572 KQKPQFQSILLSATLTPAVQRLAG-MTLQNPIQIDAADSTDI--HNTT--D--SLVI--PD----SL-KQHF-----IVT 632 (930)
Q Consensus 572 ~~~~~~q~vl~SAT~~~~~~~l~~-~~~~~~~~i~~~~~~~~--~~~~--~--~~~~--~~----~~-~~~~-----~~~ 632 (930)
. ..++++||||+.+....... ..+-.|+...+...... .... . .... +. .. ...| ...
T Consensus 248 ~---~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~ 324 (501)
T PHA02558 248 N---CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYIT 324 (501)
T ss_pred c---cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHh
Confidence 2 56899999999753221110 00111222211100000 0000 0 0000 00 00 0000 112
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
....|...+...+..... .+.+++|||.+.++++.+++.|... +..+..+||+|++++|..+++.|++|+..
T Consensus 325 ~~~~Rn~~I~~~~~~~~~-----~~~~~lV~~~~~~h~~~L~~~L~~~---g~~v~~i~G~~~~~eR~~i~~~~~~~~~~ 396 (501)
T PHA02558 325 SHTKRNKWIANLALKLAK-----KGENTFVMFKYVEHGKPLYEMLKKV---YDKVYYVSGEVDTEDRNEMKKIAEGGKGI 396 (501)
T ss_pred ccHHHHHHHHHHHHHHHh-----cCCCEEEEEEEHHHHHHHHHHHHHc---CCCEEEEeCCCCHHHHHHHHHHHhCCCCe
Confidence 223344444444333221 2568899999999999999999885 77899999999999999999999999999
Q ss_pred EEEec-cccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEE
Q psy15524 713 VLICT-DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL 761 (930)
Q Consensus 713 vLv~T-~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~ 761 (930)
||||| +++++|+|+|++++||.++++.+...|+||+||++|.+..+...
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~ 446 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIA 446 (501)
T ss_pred EEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceE
Confidence 99998 99999999999999999999999999999999999988655433
No 80
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.6e-33 Score=294.98 Aligned_cols=338 Identities=22% Similarity=0.282 Sum_probs=237.3
Q ss_pred CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
+.-+++.+|.......+.+ |.+++.|||-|||+.+++-+...+.. .+| ++|+++||+-|+.|.++.+.+.+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHh
Confidence 3446788898888777765 89999999999999998888888765 334 89999999999999999999988
Q ss_pred ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l 570 (930)
.- +......++|... ..++...+...+|+|+||.-+.+-+.. +.++++++.++|+|||||-....-. ..+.+..
T Consensus 83 ~i-p~~~i~~ltGev~-p~~R~~~w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAY---v~Va~~y 156 (542)
T COG1111 83 GI-PEDEIAALTGEVR-PEEREELWAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAY---VFVAKEY 156 (542)
T ss_pred CC-ChhheeeecCCCC-hHHHHHHHhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchH---HHHHHHH
Confidence 63 2233455666544 455666777899999999998777765 6788999999999999996533211 2222222
Q ss_pred hhcCccceEEEEccccCHHHHHHH---hhhcCCCEEEEccCCCCc-----------------------------------
Q psy15524 571 KKQKPQFQSILLSATLTPAVQRLA---GMTLQNPIQIDAADSTDI----------------------------------- 612 (930)
Q Consensus 571 ~~~~~~~q~vl~SAT~~~~~~~l~---~~~~~~~~~i~~~~~~~~----------------------------------- 612 (930)
-....++.++++|||+....+.+. ....-..+.+......+.
T Consensus 157 ~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~L 236 (542)
T COG1111 157 LRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRL 236 (542)
T ss_pred HHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHH
Confidence 223447889999999976543332 222112122211111000
Q ss_pred ---------ccCc-----c-------ceecCCC-----------------------------------------------
Q psy15524 613 ---------HNTT-----D-------SLVIPDS----------------------------------------------- 624 (930)
Q Consensus 613 ---------~~~~-----~-------~~~~~~~----------------------------------------------- 624 (930)
.... + ...+...
T Consensus 237 k~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~ 316 (542)
T COG1111 237 KPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKG 316 (542)
T ss_pred HHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhccc
Confidence 0000 0 0000000
Q ss_pred -c-------------------eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCC
Q psy15524 625 -L-------------------KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684 (930)
Q Consensus 625 -~-------------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~ 684 (930)
. ...-.....+.|+..+..++....... ++.++|||++.+++++.+...|.+....
T Consensus 317 ~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~---~~~RvIVFT~yRdTae~i~~~L~~~~~~- 392 (542)
T COG1111 317 GSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKN---GDSRVIVFTEYRDTAEEIVNFLKKIGIK- 392 (542)
T ss_pred chHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcC---CCceEEEEehhHhHHHHHHHHHHhcCCc-
Confidence 0 000001112334555555555544332 2689999999999999999999886432
Q ss_pred ceEEEe--------cCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC
Q psy15524 685 IAFFKL--------HGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756 (930)
Q Consensus 685 ~~~~~l--------hg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 756 (930)
.. ..+ ..||+|.++.+++++|++|..+|||||+++++|+|+|.+|+||.|++-.|...++||.|||||. +
T Consensus 393 ~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r 470 (542)
T COG1111 393 AR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-R 470 (542)
T ss_pred ce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-C
Confidence 21 122 2479999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred CceEEEEeCcccH
Q psy15524 757 EGSSLLFLIPSEV 769 (930)
Q Consensus 757 ~g~~~~~~~~~e~ 769 (930)
.|..+++++....
T Consensus 471 ~Grv~vLvt~gtr 483 (542)
T COG1111 471 KGRVVVLVTEGTR 483 (542)
T ss_pred CCeEEEEEecCch
Confidence 9999999998733
No 81
>KOG0351|consensus
Probab=100.00 E-value=3.4e-34 Score=336.98 Aligned_cols=341 Identities=21% Similarity=0.272 Sum_probs=262.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+.....+...||...++|-|.++|..++.|+|++|.+|||.||++||.+|++- .+...|||+|..+|+
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------~~gitvVISPL~SLm 317 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL------------LGGVTVVISPLISLM 317 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc------------cCCceEEeccHHHHH
Confidence 34667777789999999999999999999999999999999999999999982 134789999999999
Q ss_pred HHHHHHHHHhhccCCCcceEEEeCCCchH---HHHHHHhcC---CcEEEECchhHHHhhhcc-CCccccc---ceEEEEe
Q psy15524 480 LQTLEIFTKLCKSFTWIVPSWLTGGEKMK---SEKARIRKG---ISILVATPGRLLDHCKHT-ETLKFSK---VEHLVLD 549 (930)
Q Consensus 480 ~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~~~~~---~~Ilv~Tp~rl~~~l~~~-~~~~~~~---l~~lVlD 549 (930)
..+...+... .+....+.++.... ...+.+..+ ++|++.||+++...-.-. ....+.. +.++|+|
T Consensus 318 ~DQv~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 318 QDQVTHLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred HHHHHhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 8877766332 24556666666554 333444443 789999999885432211 1112333 8999999
Q ss_pred cchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHH--hhhcCCCEEEEccCCCCcccCccceecCCCc
Q psy15524 550 EADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLA--GMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625 (930)
Q Consensus 550 Eah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 625 (930)
|||++..|| |++.+..+.....+. +...++++|||.+..+..-+ ...+.+|..+.... .+.++
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~-~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf------------nR~NL 459 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRF-PGVPFIALTATATERVREDVIRSLGLRNPELFKSSF------------NRPNL 459 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhC-CCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC------------CCCCc
Confidence 999999999 778777765555443 45899999999998876533 33455665433211 11223
Q ss_pred eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHH
Q psy15524 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKT 705 (930)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~ 705 (930)
...+..-........+...+.... +....||||.++.+|+.++..|... ++....||++|+..+|..|.++
T Consensus 460 ~yeV~~k~~~~~~~~~~~~~~~~~------~~~s~IIYC~sr~~ce~vs~~L~~~---~~~a~~YHAGl~~~~R~~Vq~~ 530 (941)
T KOG0351|consen 460 KYEVSPKTDKDALLDILEESKLRH------PDQSGIIYCLSRKECEQVSAVLRSL---GKSAAFYHAGLPPKERETVQKA 530 (941)
T ss_pred eEEEEeccCccchHHHHHHhhhcC------CCCCeEEEeCCcchHHHHHHHHHHh---chhhHhhhcCCCHHHHHHHHHH
Confidence 222222221233333333333322 2779999999999999999999986 6778888999999999999999
Q ss_pred hhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 706 FRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 706 F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
|..++.+|+|||=++++|||.|+|+.||||..|.+.+.|+|.+|||||.|....|++|+...+..-++.+...+
T Consensus 531 w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 531 WMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred HhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888876655
No 82
>KOG0346|consensus
Probab=100.00 E-value=1.8e-34 Score=296.74 Aligned_cols=265 Identities=29% Similarity=0.360 Sum_probs=226.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.||-+|+.|||.+++|+|++..|.||||||.+|++|+++.+...+.......++.++||+||+|||+|++..+.++
T Consensus 37 lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL 116 (569)
T KOG0346|consen 37 LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKL 116 (569)
T ss_pred hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999988665544567889999999999999999999999
Q ss_pred hhhcC-CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 81 CKSFT-WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
...+. .+....+..+.+.......+...++|+|+||++++.++.......+..++++|+||||.++..||+.++..+..
T Consensus 117 ~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~ 196 (569)
T KOG0346|consen 117 VEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRS 196 (569)
T ss_pred HHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHH
Confidence 88776 45555566566666667888899999999999999999875557789999999999999999999999988887
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++... |.+++|||++
T Consensus 197 ~LPr~~----------------------------------------------------------------Q~~LmSATl~ 212 (569)
T KOG0346|consen 197 HLPRIY----------------------------------------------------------------QCFLMSATLS 212 (569)
T ss_pred hCCchh----------------------------------------------------------------hheeehhhhh
Confidence 776433 8888888898
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+..+...++++|+++...+.+. ..++.+.|+++.|++.+|...+..++.= .--.++.|||+||.
T Consensus 213 dDv~~LKkL~l~nPviLkl~e~el--------~~~dqL~Qy~v~cse~DKflllyallKL------~LI~gKsliFVNtI 278 (569)
T KOG0346|consen 213 DDVQALKKLFLHNPVILKLTEGEL--------PNPDQLTQYQVKCSEEDKFLLLYALLKL------RLIRGKSLIFVNTI 278 (569)
T ss_pred hHHHHHHHHhccCCeEEEeccccC--------CCcccceEEEEEeccchhHHHHHHHHHH------HHhcCceEEEEech
Confidence 999999999999999987776653 3468899999999999999988888731 22347999999999
Q ss_pred cchhhhHHHHhhhhhhhhhcccCC
Q psy15524 320 DMADYHTELLSTKKKIKKLKEYNI 343 (930)
Q Consensus 320 ~~~~~l~~~L~~~~~~k~~~~~~~ 343 (930)
+.|..+--.|...|-.....+...
T Consensus 279 dr~YrLkLfLeqFGiksciLNseL 302 (569)
T KOG0346|consen 279 DRCYRLKLFLEQFGIKSCILNSEL 302 (569)
T ss_pred hhhHHHHHHHHHhCcHhhhhcccc
Confidence 999999999998887776654443
No 83
>KOG0951|consensus
Probab=100.00 E-value=1.5e-33 Score=321.19 Aligned_cols=390 Identities=20% Similarity=0.237 Sum_probs=289.1
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCC-cEEEEccCCCchhHHhhHHHHHHHHhhCcc--cCCCCCee
Q psy15524 392 YEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPK--ISRKDGIY 468 (930)
Q Consensus 392 f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~--~~~~~~~~ 468 (930)
|-.+..+|.+-..++ +|..+++++|.++.+..+.+. ++++|||||+|||..+++.+++.+...... .......+
T Consensus 290 l~~iselP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fK 366 (1674)
T KOG0951|consen 290 LVKISELPKWNQPAF---FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFK 366 (1674)
T ss_pred eEeecCCcchhhhhc---ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccce
Confidence 334445666666665 588889999999999999875 699999999999999999999998764321 11123457
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCc-ccccceEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL-KFSKVEHLV 547 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~-~~~~l~~lV 547 (930)
++|++|+++|++.+...|.+.+..++.. +.-++|+.....+. ..+.+|+||||++++-..++.... ..+-++++|
T Consensus 367 IVYIAPmKaLvqE~VgsfSkRla~~GI~-V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlI 442 (1674)
T KOG0951|consen 367 IVYIAPMKALVQEMVGSFSKRLAPLGIT-VLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLI 442 (1674)
T ss_pred EEEEeeHHHHHHHHHHHHHhhccccCcE-EEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHh
Confidence 9999999999999999999999888754 45567765433221 246899999999998777764443 245689999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHh----hcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCC
Q psy15524 548 LDEADRILDQGYERDIAEFLEILK----KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD 623 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~----~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 623 (930)
+||.|.+.| ..+..++.|+.+.. .....++.+++|||+|+- .+.+.....++.-+ ...+....|.
T Consensus 443 IDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~gl---------f~fd~syRpv 511 (1674)
T KOG0951|consen 443 IDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGL---------FYFDSSYRPV 511 (1674)
T ss_pred hhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccc---------cccCcccCcC
Confidence 999997744 35666666665544 334578999999999983 22222222222111 1112235677
Q ss_pred CceEEEEEcCchh---hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhh----------hcCC-------
Q psy15524 624 SLKQHFIVTPPKL---RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST----------VLGE------- 683 (930)
Q Consensus 624 ~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~----------~~~~------- 683 (930)
++.|.|+-+..+. ++.++.+...+....+. ..+++|||+.+++++-..++.++. ++.+
T Consensus 512 PL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~a--gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ei 589 (1674)
T KOG0951|consen 512 PLKQQYIGITEKKPLKRFQAMNEACYEKVLEHA--GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREI 589 (1674)
T ss_pred CccceEeccccCCchHHHHHHHHHHHHHHHHhC--CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhh
Confidence 8999988766554 44445544444332222 258999999999988777666552 1110
Q ss_pred -----------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEe----c------
Q psy15524 684 -----------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY----T------ 736 (930)
Q Consensus 684 -----------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~----~------ 736 (930)
...+..+|+||+..+|..+++.|+.|+++|||||..++||+|+|+.+++|-. |
T Consensus 590 lrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w 669 (1674)
T KOG0951|consen 590 LRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRW 669 (1674)
T ss_pred hhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCcc
Confidence 2345556999999999999999999999999999999999999999999953 3
Q ss_pred CCCChhhHHhhhcccccCCCC--ceEEEEeCcccHHHHHHHHhcCCccchhchHHHHHhhhhhhccC
Q psy15524 737 APSSSTDYVHRVGRTARVGHE--GSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEG 801 (930)
Q Consensus 737 ~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 801 (930)
.+.++.+.+||.|||||.+.+ |.++++...+|..|+..+.+..+|+++..+..+.+.+++++..|
T Consensus 670 ~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 670 TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG 736 (1674)
T ss_pred ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc
Confidence 334788999999999999875 67777777788889999999999999999999999999988877
No 84
>KOG0333|consensus
Probab=100.00 E-value=2e-34 Score=302.47 Aligned_cols=276 Identities=28% Similarity=0.423 Sum_probs=234.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcC---CCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI---SRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~---~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
.||..|+|+|..|||..+..+|+|..|.||||||.+|++|++..+....+-. ....|+++++|+||++|++|+.++-
T Consensus 263 ~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999997755322 2235899999999999999999999
Q ss_pred HHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
.+++..++ +.+..+.||...+++.-.+..+|+|+|+||++|++.+.+ ..+-++++.+||+||||.|+|.||++++..+
T Consensus 343 ~kf~~~lg-~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~i 420 (673)
T KOG0333|consen 343 NKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKI 420 (673)
T ss_pred HHhccccc-ceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHH
Confidence 99998877 777778899999999888999999999999999999987 6777899999999999999999999999999
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
+..++..+.+ +. -||. +....+.......+..+|+++|+||
T Consensus 421 L~~mPssn~k---------~~---------------------tde~---------~~~~~~~~~~~~~k~yrqT~mftat 461 (673)
T KOG0333|consen 421 LEQMPSSNAK---------PD---------------------TDEK---------EGEERVRKNFSSSKKYRQTVMFTAT 461 (673)
T ss_pred HHhCCccccC---------CC---------------------ccch---------hhHHHHHhhcccccceeEEEEEecC
Confidence 9999765411 00 0111 1122333444444566899999999
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEe
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~ 317 (930)
+++.++.+++.||++|+.+.+..... ..+.+.|.+..++..+|...|..+|. .....|+|||+|
T Consensus 462 m~p~verlar~ylr~pv~vtig~~gk---------~~~rveQ~v~m~~ed~k~kkL~eil~-------~~~~ppiIIFvN 525 (673)
T KOG0333|consen 462 MPPAVERLARSYLRRPVVVTIGSAGK---------PTPRVEQKVEMVSEDEKRKKLIEILE-------SNFDPPIIIFVN 525 (673)
T ss_pred CChHHHHHHHHHhhCCeEEEeccCCC---------CccchheEEEEecchHHHHHHHHHHH-------hCCCCCEEEEEe
Confidence 99999999999999999998776552 34679999999999999999999993 346789999999
Q ss_pred cccchhhhHHHHhhhh
Q psy15524 318 TQDMADYHTELLSTKK 333 (930)
Q Consensus 318 s~~~~~~l~~~L~~~~ 333 (930)
+++.|+.+|+.|.+.|
T Consensus 526 ~kk~~d~lAk~LeK~g 541 (673)
T KOG0333|consen 526 TKKGADALAKILEKAG 541 (673)
T ss_pred chhhHHHHHHHHhhcc
Confidence 9999999999999887
No 85
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.4e-32 Score=302.07 Aligned_cols=312 Identities=15% Similarity=0.211 Sum_probs=200.6
Q ss_pred HHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC-
Q psy15524 418 VQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT- 494 (930)
Q Consensus 418 iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~- 494 (930)
+|.++++.+.++++ ++++||||||||++|++|++.. +.++++++|+++|+.|+++.+..++..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 49999999999875 7889999999999999999841 23589999999999999999999875432
Q ss_pred --CcceEEEeCCCchH--HH-----------------HHH-HhcCCcEEEECchhHHHhhhccC---C----cccccceE
Q psy15524 495 --WIVPSWLTGGEKMK--SE-----------------KAR-IRKGISILVATPGRLLDHCKHTE---T----LKFSKVEH 545 (930)
Q Consensus 495 --~~~~~~~~gg~~~~--~~-----------------~~~-~~~~~~Ilv~Tp~rl~~~l~~~~---~----~~~~~l~~ 545 (930)
......+.|..... .. +.. ....+.|+++||+.|..+++.+. . ..+.++++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 22233334431111 00 001 12357899999999977665421 1 12578999
Q ss_pred EEEecchhhhhcCcHHHH--HHHHHHHhhcCccceEEEEccccCHHHHHHHhhh--cCCCEEEEccCC-CCc-------c
Q psy15524 546 LVLDEADRILDQGYERDI--AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT--LQNPIQIDAADS-TDI-------H 613 (930)
Q Consensus 546 lVlDEah~l~~~g~~~~l--~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~--~~~~~~i~~~~~-~~~-------~ 613 (930)
+|+||+|.+...+....+ ......+.......+++++|||+++.+.+..... +..+........ ... .
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcc
Confidence 999999998754422111 1122222211225799999999999876666543 344432211110 000 0
Q ss_pred cCc-cceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecC
Q psy15524 614 NTT-DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHG 692 (930)
Q Consensus 614 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg 692 (930)
... ....+...+.+.+.. ....+...+...+...........++++||||+|++.++.+++.|++. +.++.+..+||
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~-~~~~~~~~l~g 306 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ-GLGDDIGRITG 306 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-CCCceEEeeec
Confidence 000 000011134444433 333333333222221111111112679999999999999999999864 12457788999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccc
Q psy15524 693 SMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTA 752 (930)
Q Consensus 693 ~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRag 752 (930)
.+++.+|.++ ++..||||||+++||+|+|.+ +|| ++ |.+.++|+||+||+|
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999998754 367899999999999999987 566 45 899999999999997
No 86
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.2e-33 Score=321.03 Aligned_cols=252 Identities=31% Similarity=0.440 Sum_probs=201.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|.++||.+++|+|++++||||||||++|++|++.++..... .....++.+|||+||+|||.|+.+.++++
T Consensus 148 ~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 148 AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999998865322 12235788999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.... +.+.+++|+.....+...+..+++|+|+||++|.+++.. ....++++++|||||||+|++++|++++..++..
T Consensus 227 ~~~~~-i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 227 GASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred hcccC-ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh
Confidence 87554 677788899888888888888999999999999999876 5667899999999999999999999988887765
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. +. |+++||||++.
T Consensus 305 ~~~---~~-------------------------------------------------------------q~l~~SAT~p~ 320 (545)
T PTZ00110 305 IRP---DR-------------------------------------------------------------QTLMWSATWPK 320 (545)
T ss_pred CCC---CC-------------------------------------------------------------eEEEEEeCCCH
Confidence 532 22 66666666666
Q ss_pred HHHHhhhcccc-CCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.++.++..++. +++.+.+.... .....++.+.+..+....|...|..++... .....++||||+++
T Consensus 321 ~v~~l~~~l~~~~~v~i~vg~~~--------l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~-----~~~~~k~LIF~~t~ 387 (545)
T PTZ00110 321 EVQSLARDLCKEEPVHVNVGSLD--------LTACHNIKQEVFVVEEHEKRGKLKMLLQRI-----MRDGDKILIFVETK 387 (545)
T ss_pred HHHHHHHHHhccCCEEEEECCCc--------cccCCCeeEEEEEEechhHHHHHHHHHHHh-----cccCCeEEEEecCh
Confidence 66666666554 45554433211 122356778888777778888888888431 22567999999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.|+.++..|+..
T Consensus 388 ~~a~~l~~~L~~~ 400 (545)
T PTZ00110 388 KGADFLTKELRLD 400 (545)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999643
No 87
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-32 Score=312.15 Aligned_cols=252 Identities=26% Similarity=0.378 Sum_probs=205.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcC-CCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||..|||+|++|||.++.|+|++++||||||||++|++|+++.+....... ....++++|||+||+|||.|+++.+..
T Consensus 26 ~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 26 KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999987643211 123467899999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+....+ +.+..++||.....+...+..+++|+|+||+++.+++.. ..+.++++++|||||||++++++|..++..++.
T Consensus 106 l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~ 183 (423)
T PRK04837 106 LAQATG-LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFR 183 (423)
T ss_pred HhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEecHHHHhhcccHHHHHHHHH
Confidence 987665 777888899888888888888899999999999999875 677899999999999999999999988887776
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++... .+|.++||||++
T Consensus 184 ~~~~~~--------------------------------------------------------------~~~~~l~SAT~~ 201 (423)
T PRK04837 184 RMPPAN--------------------------------------------------------------QRLNMLFSATLS 201 (423)
T ss_pred hCCCcc--------------------------------------------------------------ceeEEEEeccCC
Confidence 553211 126677777777
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+..+....+.+|..+.+.... .....+.+.+.......|...+..++. .....++||||+++
T Consensus 202 ~~~~~~~~~~~~~p~~i~v~~~~---------~~~~~i~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lVF~~t~ 265 (423)
T PRK04837 202 YRVRELAFEHMNNPEYVEVEPEQ---------KTGHRIKEELFYPSNEEKMRLLQTLIE-------EEWPDRAIIFANTK 265 (423)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCC---------cCCCceeEEEEeCCHHHHHHHHHHHHH-------hcCCCeEEEEECCH
Confidence 77777777777777776554332 123456677777667788888888883 33467899999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
..|+.++..|+..
T Consensus 266 ~~~~~l~~~L~~~ 278 (423)
T PRK04837 266 HRCEEIWGHLAAD 278 (423)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999754
No 88
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-32 Score=315.85 Aligned_cols=244 Identities=31% Similarity=0.494 Sum_probs=206.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||++|||+|++||+.++.|+|++++||||||||++|++|+++.+... ....++||++||++|+.|+.+.++.+
T Consensus 22 ~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~lil~PtreLa~Q~~~~~~~~ 95 (460)
T PRK11776 22 LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQALVLCPTRELADQVAKEIRRL 95 (460)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999998541 23567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.......+..++||.....+...+..+++|+|+||+++.+++.+ +.+.++++++||+||||+|++++|...+..++..
T Consensus 96 ~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~ 174 (460)
T PRK11776 96 ARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQ 174 (460)
T ss_pred HhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHh
Confidence 876656788889999998888888888999999999999999876 6677899999999999999999998888777765
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. +|+++||||+++
T Consensus 175 ~~~~----------------------------------------------------------------~q~ll~SAT~~~ 190 (460)
T PRK11776 175 APAR----------------------------------------------------------------RQTLLFSATYPE 190 (460)
T ss_pred CCcc----------------------------------------------------------------cEEEEEEecCcH
Confidence 5322 277777777777
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..++..++.+|..+.+.... ....+.+.+..++...|...+..++. .....++||||+++.
T Consensus 191 ~~~~l~~~~~~~~~~i~~~~~~----------~~~~i~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lVF~~t~~ 253 (460)
T PRK11776 191 GIAAISQRFQRDPVEVKVESTH----------DLPAIEQRFYEVSPDERLPALQRLLL-------HHQPESCVVFCNTKK 253 (460)
T ss_pred HHHHHHHHhcCCCEEEEECcCC----------CCCCeeEEEEEeCcHHHHHHHHHHHH-------hcCCCceEEEECCHH
Confidence 7777888888888777654432 13457888888888889999988883 345678999999999
Q ss_pred chhhhHHHHhhh
Q psy15524 321 MADYHTELLSTK 332 (930)
Q Consensus 321 ~~~~l~~~L~~~ 332 (930)
.++.+++.|...
T Consensus 254 ~~~~l~~~L~~~ 265 (460)
T PRK11776 254 ECQEVADALNAQ 265 (460)
T ss_pred HHHHHHHHHHhC
Confidence 999999999764
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.3e-32 Score=312.34 Aligned_cols=333 Identities=19% Similarity=0.197 Sum_probs=235.6
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
++|+-.|.+..+.-++.-|+.|+||+|||++|.+|++..+.. |..++||+||++||.|.++.+..++..++
T Consensus 81 ~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 566666666666666667999999999999999999977654 55699999999999999999999998766
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccCCccc-----ccceEEEEecchhhh-h-----------
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLKF-----SKVEHLVLDEADRIL-D----------- 556 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~~~~-----~~l~~lVlDEah~l~-~----------- 556 (930)
+.+++++||........ ...++|+|+|||+| .++++....+.+ +.+.++|+||||.++ |
T Consensus 152 -Ltv~~i~gg~~~~~r~~--~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 152 -LTVGVIYPDMSHKEKQE--AYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred -ceEEEEeCCCCHHHHHH--HhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 56778888876554433 34799999999999 999887534444 689999999999986 1
Q ss_pred ----cCcHHHHHHHHHHHhhc-----------CccceEEEEccccCHHHHHHH---------------------------
Q psy15524 557 ----QGYERDIAEFLEILKKQ-----------KPQFQSILLSATLTPAVQRLA--------------------------- 594 (930)
Q Consensus 557 ----~g~~~~l~~i~~~l~~~-----------~~~~q~vl~SAT~~~~~~~l~--------------------------- 594 (930)
......+..++..|... ....+.+.+|-.-...++.+.
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 11233445555555432 112333444433111111111
Q ss_pred ---h-hhcCCCEEEE-------ccCC-----------------------------C----------------------Cc
Q psy15524 595 ---G-MTLQNPIQID-------AADS-----------------------------T----------------------DI 612 (930)
Q Consensus 595 ---~-~~~~~~~~i~-------~~~~-----------------------------~----------------------~~ 612 (930)
. .+.++-.++- ++.. . -.
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence 0 0011111110 0000 0 00
Q ss_pred ----------ccCccceecCCCceE------EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 613 ----------HNTTDSLVIPDSLKQ------HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 613 ----------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
-.......+|..... -.+......|..++...+..... .+.|+||||+|.+.++.++++
T Consensus 389 a~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~-----~g~PVLVgt~Sie~sE~ls~~ 463 (896)
T PRK13104 389 ADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV-----RKQPVLVGTVSIEASEFLSQL 463 (896)
T ss_pred ChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEeCcHHHHHHHHHH
Confidence 000111223332221 12445556778887777765433 288999999999999999999
Q ss_pred HhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC-----------------------------
Q psy15524 677 LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP----------------------------- 727 (930)
Q Consensus 677 l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip----------------------------- 727 (930)
|.+. |+++..+||++.+.+|..+.++|+.|. |+|||++|+||+||.
T Consensus 464 L~~~---gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (896)
T PRK13104 464 LKKE---NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQ 538 (896)
T ss_pred HHHc---CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhh
Confidence 9985 899999999999999999999999995 999999999999995
Q ss_pred ----Cc-----cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 728 ----LV-----DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 728 ----~v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.| -+||....+.|..--.|-.||+||.|.+|.+.+|++=++.
T Consensus 539 ~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 539 KRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 11 2799999999999999999999999999999999995543
No 90
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.5e-32 Score=320.16 Aligned_cols=246 Identities=30% Similarity=0.470 Sum_probs=207.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||++|||+|+++|+.+++|+|+|++||||||||++|.+|+++.+.. ...++++|||+||++|+.|+++.+..+
T Consensus 24 ~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~------~~~~~~~LIL~PTreLa~Qv~~~l~~~ 97 (629)
T PRK11634 24 LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP------ELKAPQILVLAPTRELAVQVAEAMTDF 97 (629)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh------ccCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998854 123568999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
......+.+..++||.....+...+..+++|+|+||+++++++.+ ..+.++++++|||||||+|++++|..++..++..
T Consensus 98 ~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~ 176 (629)
T PRK11634 98 SKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 (629)
T ss_pred HhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHHHhhcccHHHHHHHHHh
Confidence 877666788888999988888888888999999999999999876 6678999999999999999999998887777665
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. .|+++||||++.
T Consensus 177 lp~~----------------------------------------------------------------~q~llfSAT~p~ 192 (629)
T PRK11634 177 IPEG----------------------------------------------------------------HQTALFSATMPE 192 (629)
T ss_pred CCCC----------------------------------------------------------------CeEEEEEccCCh
Confidence 5322 277788888888
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..+...++.++..+.+.... .....+.+.|..+....|...|..++. .....++||||+|+.
T Consensus 193 ~i~~i~~~~l~~~~~i~i~~~~---------~~~~~i~q~~~~v~~~~k~~~L~~~L~-------~~~~~~~IVF~~tk~ 256 (629)
T PRK11634 193 AIRRITRRFMKEPQEVRIQSSV---------TTRPDISQSYWTVWGMRKNEALVRFLE-------AEDFDAAIIFVRTKN 256 (629)
T ss_pred hHHHHHHHHcCCCeEEEccCcc---------ccCCceEEEEEEechhhHHHHHHHHHH-------hcCCCCEEEEeccHH
Confidence 8888888888888777655433 123567788887877889999988883 344578999999999
Q ss_pred chhhhHHHHhhhh
Q psy15524 321 MADYHTELLSTKK 333 (930)
Q Consensus 321 ~~~~l~~~L~~~~ 333 (930)
.++.++..|...+
T Consensus 257 ~a~~l~~~L~~~g 269 (629)
T PRK11634 257 ATLEVAEALERNG 269 (629)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999997654
No 91
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.8e-32 Score=313.02 Aligned_cols=250 Identities=34% Similarity=0.521 Sum_probs=201.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|||+|++||+.+++|+|++++||||||||++|++|+++.+.............++|||+||++||.|+.+.++.+
T Consensus 19 ~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 19 QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999865432211223468999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+ +....++|+.....+...+..+++|+|+||++|++++.. ..+.++++++|||||||++++++|..++..++..
T Consensus 99 ~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~ 176 (456)
T PRK10590 99 SKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAK 176 (456)
T ss_pred hccCC-CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecHHHHhccccHHHHHHHHHh
Confidence 87655 667778888888888778888899999999999998875 5667899999999999999999998887777655
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++.. +|.++||||++.
T Consensus 177 l~~~----------------------------------------------------------------~q~l~~SAT~~~ 192 (456)
T PRK10590 177 LPAK----------------------------------------------------------------RQNLLFSATFSD 192 (456)
T ss_pred CCcc----------------------------------------------------------------CeEEEEeCCCcH
Confidence 4322 267777777777
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..+...++.++..+.+.... .....+.+++..++...|...+..++ ......++||||+++.
T Consensus 193 ~~~~l~~~~~~~~~~i~~~~~~---------~~~~~i~~~~~~~~~~~k~~~l~~l~-------~~~~~~~~lVF~~t~~ 256 (456)
T PRK10590 193 DIKALAEKLLHNPLEIEVARRN---------TASEQVTQHVHFVDKKRKRELLSQMI-------GKGNWQQVLVFTRTKH 256 (456)
T ss_pred HHHHHHHHHcCCCeEEEEeccc---------ccccceeEEEEEcCHHHHHHHHHHHH-------HcCCCCcEEEEcCcHH
Confidence 7777777777777666543322 12356778888887777777777666 3345678999999999
Q ss_pred chhhhHHHHhhh
Q psy15524 321 MADYHTELLSTK 332 (930)
Q Consensus 321 ~~~~l~~~L~~~ 332 (930)
.++.+++.|...
T Consensus 257 ~~~~l~~~L~~~ 268 (456)
T PRK10590 257 GANHLAEQLNKD 268 (456)
T ss_pred HHHHHHHHHHHC
Confidence 999999999643
No 92
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-32 Score=317.89 Aligned_cols=253 Identities=28% Similarity=0.450 Sum_probs=203.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-CCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||+.|||+|+++||.+++|+|++++||||||||++|++|+++.+...... .....++++|||+||+||+.|+++.+.+
T Consensus 27 ~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 27 AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998653211 1112357899999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
++...+ +.+..++|+.....+...+..+++|+|+||++|++++.+...+.+..+++|||||||+|++++|..++..++.
T Consensus 107 l~~~~~-i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~ 185 (572)
T PRK04537 107 FGADLG-LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLR 185 (572)
T ss_pred HhccCC-ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHH
Confidence 987655 7788899999888888888888999999999999998765567789999999999999999999988888877
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++... . +|+++||||++
T Consensus 186 ~lp~~~-~-------------------------------------------------------------~q~ll~SATl~ 203 (572)
T PRK04537 186 RMPERG-T-------------------------------------------------------------RQTLLFSATLS 203 (572)
T ss_pred hccccc-C-------------------------------------------------------------ceEEEEeCCcc
Confidence 664321 1 26666666666
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+..+...++.++..+...... .....+.+.+..+....|...+..++ ....+.++||||||+
T Consensus 204 ~~v~~l~~~~l~~p~~i~v~~~~---------~~~~~i~q~~~~~~~~~k~~~L~~ll-------~~~~~~k~LVF~nt~ 267 (572)
T PRK04537 204 HRVLELAYEHMNEPEKLVVETET---------ITAARVRQRIYFPADEEKQTLLLGLL-------SRSEGARTMVFVNTK 267 (572)
T ss_pred HHHHHHHHHHhcCCcEEEecccc---------ccccceeEEEEecCHHHHHHHHHHHH-------hcccCCcEEEEeCCH
Confidence 66666666666666554432221 12355777777777788888888888 344567999999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.|+.+++.|.+.
T Consensus 268 ~~ae~l~~~L~~~ 280 (572)
T PRK04537 268 AFVERVARTLERH 280 (572)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999754
No 93
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9.5e-32 Score=319.88 Aligned_cols=340 Identities=23% Similarity=0.275 Sum_probs=250.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
.+...+.+ .|+..+.++|.+|+..+.+|+|++|..+||||||+||++||++.+.+ ....++|+|.||++||.
T Consensus 58 ~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~-------~~~a~AL~lYPtnALa~ 129 (851)
T COG1205 58 SLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR-------DPSARALLLYPTNALAN 129 (851)
T ss_pred HHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh-------CcCccEEEEechhhhHh
Confidence 34566654 57888999999999999999999999999999999999999999987 33448999999999999
Q ss_pred HHHHHHHHhhccCCC-cceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-C--cccccceEEEEecchhhhh
Q psy15524 481 QTLEIFTKLCKSFTW-IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-T--LKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 481 Q~~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~--~~~~~l~~lVlDEah~l~~ 556 (930)
.+.+.+.++...++. +.....+|++..........+.++|+++||..|..++.+.. . +.++++++||+||+|.+ .
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-r 208 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-R 208 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-c
Confidence 999999999988873 44455555555444445567889999999999977444322 2 24788999999999976 3
Q ss_pred cCcHHHHHHHHHHHhh----cCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc
Q psy15524 557 QGYERDIAEFLEILKK----QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT 632 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~----~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (930)
-.|+..+..++++|.. .....|+++.|||+.+..+........+... .+... ..|..........
T Consensus 209 Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~-~v~~~----------g~~~~~~~~~~~~ 277 (851)
T COG1205 209 GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV-PVDED----------GSPRGLRYFVRRE 277 (851)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCccee-eccCC----------CCCCCceEEEEeC
Confidence 3377777666666654 3457899999999987544333333222222 12211 1122233333333
Q ss_pred C---------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHH----HHHhhhcCC-CceEEEecCCCCHHH
Q psy15524 633 P---------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT----ELLSTVLGE-NIAFFKLHGSMSQSE 698 (930)
Q Consensus 633 ~---------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~----~~l~~~~~~-~~~~~~lhg~~~~~~ 698 (930)
+ .......+..++..... .+-++|+|+.++..++.++ ..+...... ...+..++|+|...+
T Consensus 278 p~~~~~~~~~r~s~~~~~~~~~~~~~~-----~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~e 352 (851)
T COG1205 278 PPIRELAESIRRSALAELATLAALLVR-----NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREE 352 (851)
T ss_pred CcchhhhhhcccchHHHHHHHHHHHHH-----cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHH
Confidence 3 11222222222222211 2779999999999999886 222222100 145777899999999
Q ss_pred HHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeC
Q psy15524 699 RTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 699 R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
|.+++..|++|+..++++|+++.-|+|+-++++||.+..|. +..++.||.||+||.++.+..+.++.
T Consensus 353 r~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 353 RRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred HHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999 89999999999999996666666555
No 94
>KOG0335|consensus
Probab=100.00 E-value=8.1e-33 Score=295.82 Aligned_cols=261 Identities=33% Similarity=0.393 Sum_probs=215.4
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCC----CCCeEEEEEcccHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR----KDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~----~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
||..|||+|+.+||.+..|+++++||+||||||.+|++|++.++......... ...+.+||++||+||+.|++++.
T Consensus 93 ~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea 172 (482)
T KOG0335|consen 93 GYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEA 172 (482)
T ss_pred cccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHH
Confidence 78899999999999999999999999999999999999999999886542111 12488999999999999999999
Q ss_pred HHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHH
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAE 156 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~ 156 (930)
+++.... .+.....+|+.+...+...+.++|||+|+||++|.+++.. +.+.+..++++|+||||.|+| .+|+++++.
T Consensus 173 ~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~ 250 (482)
T KOG0335|consen 173 RKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLVLDEADRMLDEMGFEPQIRK 250 (482)
T ss_pred Hhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEEecchHHhhhhccccccHHH
Confidence 9987643 4788889999999999999999999999999999999886 889999999999999999999 899999999
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEec
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sa 236 (930)
|+......+ ...+|+++|||
T Consensus 251 iv~~~~~~~------------------------------------------------------------~~~~qt~mFSA 270 (482)
T KOG0335|consen 251 IVEQLGMPP------------------------------------------------------------KNNRQTLLFSA 270 (482)
T ss_pred HhcccCCCC------------------------------------------------------------ccceeEEEEec
Confidence 887664321 12349999999
Q ss_pred ccchHHHHhhhccccC-CeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccc--cccCCcceEE
Q psy15524 237 TLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN--VNEDEESKML 313 (930)
Q Consensus 237 t~~~~~~~l~~~~l~~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~--~~~~~~~~~i 313 (930)
|++..+..++..++.+ .+.+.+.... ....++.|.+.++.+.+|...|+.+|...... .......+++
T Consensus 271 tfp~~iq~l~~~fl~~~yi~laV~rvg---------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tl 341 (482)
T KOG0335|consen 271 TFPKEIQRLAADFLKDNYIFLAVGRVG---------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTL 341 (482)
T ss_pred cCChhhhhhHHHHhhccceEEEEeeec---------cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEE
Confidence 9999998888877765 4444333222 23578999999999999999999999542110 0111223899
Q ss_pred EEEecccchhhhHHHHhhhh
Q psy15524 314 VFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~~ 333 (930)
|||.|++.|..++.+|...+
T Consensus 342 vFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 342 VFVETKRGADELAAFLSSNG 361 (482)
T ss_pred EEeeccchhhHHHHHHhcCC
Confidence 99999999999999998664
No 95
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7e-32 Score=311.68 Aligned_cols=250 Identities=28% Similarity=0.447 Sum_probs=199.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-CCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||+.|||+|.+|||.++.|+|++++||||||||++|++|++.++...+.. .....++++|||+||+|||.|+.+.++.
T Consensus 139 ~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 139 AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988654322 1123578899999999999999999998
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+....+ +....+.||.....+...+..+++|+|+||++|.+++.. ..+.++++++|||||||+|++++|+.++..++.
T Consensus 219 l~~~~~-~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~ 296 (518)
T PLN00206 219 LGKGLP-FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQ 296 (518)
T ss_pred HhCCCC-ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEEeecHHHHhhcchHHHHHHHHH
Confidence 877655 667778888888888888888999999999999999876 567789999999999999999999988877765
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++ ++ |+++||||++
T Consensus 297 ~l~----~~-------------------------------------------------------------q~l~~SATl~ 311 (518)
T PLN00206 297 ALS----QP-------------------------------------------------------------QVLLFSATVS 311 (518)
T ss_pred hCC----CC-------------------------------------------------------------cEEEEEeeCC
Confidence 542 22 5555555555
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..++.++..++.++..+...... .....+.+.+..++...|...+..++... .....++||||+++
T Consensus 312 ~~v~~l~~~~~~~~~~i~~~~~~---------~~~~~v~q~~~~~~~~~k~~~l~~~l~~~-----~~~~~~~iVFv~s~ 377 (518)
T PLN00206 312 PEVEKFASSLAKDIILISIGNPN---------RPNKAVKQLAIWVETKQKKQKLFDILKSK-----QHFKPPAVVFVSSR 377 (518)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC---------CCCcceeEEEEeccchhHHHHHHHHHHhh-----cccCCCEEEEcCCc
Confidence 66666666666777666544332 12345777788888778888888888431 22346899999999
Q ss_pred cchhhhHHHHhh
Q psy15524 320 DMADYHTELLST 331 (930)
Q Consensus 320 ~~~~~l~~~L~~ 331 (930)
..++.++..|..
T Consensus 378 ~~a~~l~~~L~~ 389 (518)
T PLN00206 378 LGADLLANAITV 389 (518)
T ss_pred hhHHHHHHHHhh
Confidence 999999998864
No 96
>KOG0340|consensus
Probab=100.00 E-value=8.3e-33 Score=277.56 Aligned_cols=251 Identities=32% Similarity=0.491 Sum_probs=208.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
||++.|||+|+.|||.|++|+|+|.+|.||||||.+|.+|+++++... ..|..++|+.||+||+.|+.++|..+
T Consensus 25 l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed------P~giFalvlTPTrELA~QiaEQF~al 98 (442)
T KOG0340|consen 25 LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED------PYGIFALVLTPTRELALQIAEQFIAL 98 (442)
T ss_pred hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC------CCcceEEEecchHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999762 35778999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC---CCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT---ETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
+..++ .+++.++||.+.-.+...+..++|++|+|||++-+++.++ ....+++++++|+||||.+++..|...+.-+
T Consensus 99 Gk~l~-lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i 177 (442)
T KOG0340|consen 99 GKLLN-LKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGI 177 (442)
T ss_pred ccccc-ceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhh
Confidence 88766 8899999999999999999999999999999999998876 3445899999999999999998887777766
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
.+.++.. +|+++||||
T Consensus 178 ~e~lP~~----------------------------------------------------------------RQtLlfSAT 193 (442)
T KOG0340|consen 178 EECLPKP----------------------------------------------------------------RQTLLFSAT 193 (442)
T ss_pred hccCCCc----------------------------------------------------------------cceEEEEee
Confidence 6555432 378888888
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEe
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~ 317 (930)
++..+..+..--...+.-+... ..+..+.++.+.+.|+.++...|...|+.+|.++ .....+.++||+|
T Consensus 194 itd~i~ql~~~~i~k~~a~~~e-------~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~----~~~~~~simIFvn 262 (442)
T KOG0340|consen 194 ITDTIKQLFGCPITKSIAFELE-------VIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDF----ENKENGSIMIFVN 262 (442)
T ss_pred hhhHHHHhhcCCcccccceEEe-------ccCCCCchhhhhhheeecchhhhHHHHHHHHhhh----hhccCceEEEEee
Confidence 8777766654433332111111 1122356788999999999999999999999765 3335689999999
Q ss_pred cccchhhhHHHHhhhh
Q psy15524 318 TQDMADYHTELLSTKK 333 (930)
Q Consensus 318 s~~~~~~l~~~L~~~~ 333 (930)
+..+|+.++..|+..+
T Consensus 263 ttr~cQ~l~~~l~~le 278 (442)
T KOG0340|consen 263 TTRECQLLSMTLKNLE 278 (442)
T ss_pred hhHHHHHHHHHHhhhc
Confidence 9999999999998653
No 97
>KOG0326|consensus
Probab=100.00 E-value=1.8e-33 Score=277.69 Aligned_cols=245 Identities=27% Similarity=0.482 Sum_probs=217.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++||.++.|+|+|+-|..|+|||.+|++|+++.+.. ..+..++++++||+|||.|....++++
T Consensus 103 ~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~------~~~~IQ~~ilVPtrelALQtSqvc~~l 176 (459)
T KOG0326|consen 103 KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP------KKNVIQAIILVPTRELALQTSQVCKEL 176 (459)
T ss_pred hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc------cccceeEEEEeecchhhHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999865 455778999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.+++ +.+....||.+...+.-++...++++|+||+|++++... +...++++.++|+||||.+++..|.+.+..++..
T Consensus 177 skh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~ 254 (459)
T KOG0326|consen 177 SKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADKLLSVDFQPIVEKLISF 254 (459)
T ss_pred hcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhhhhchhhhhHHHHHHHh
Confidence 99888 888899999999988888889999999999999999876 6777999999999999999999999988888877
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++..+ |.++||||+|-
T Consensus 255 lP~~r----------------------------------------------------------------QillySATFP~ 270 (459)
T KOG0326|consen 255 LPKER----------------------------------------------------------------QILLYSATFPL 270 (459)
T ss_pred CCccc----------------------------------------------------------------eeeEEecccch
Confidence 76543 88888888888
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..+.++++.+|+.+-.-.. ..+..+.|+|.++.+..|+-+|-.++. .-.-.++|||||+..
T Consensus 271 tVk~Fm~~~l~kPy~INLM~e----------Ltl~GvtQyYafV~e~qKvhCLntLfs-------kLqINQsIIFCNS~~ 333 (459)
T KOG0326|consen 271 TVKGFMDRHLKKPYEINLMEE----------LTLKGVTQYYAFVEERQKVHCLNTLFS-------KLQINQSIIFCNSTN 333 (459)
T ss_pred hHHHHHHHhccCcceeehhhh----------hhhcchhhheeeechhhhhhhHHHHHH-------HhcccceEEEeccch
Confidence 899999999999988744332 235679999999999999999988883 334568899999999
Q ss_pred chhhhHHHHhhhhh
Q psy15524 321 MADYHTELLSTKKK 334 (930)
Q Consensus 321 ~~~~l~~~L~~~~~ 334 (930)
++|-+|..+.+.|.
T Consensus 334 rVELLAkKITelGy 347 (459)
T KOG0326|consen 334 RVELLAKKITELGY 347 (459)
T ss_pred HhHHHHHHHHhccc
Confidence 99999999988774
No 98
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.2e-30 Score=316.71 Aligned_cols=335 Identities=24% Similarity=0.325 Sum_probs=233.3
Q ss_pred CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
+.-+++++|..++..++.+ |+++++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.+++++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--------KKGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--------hCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3447899999999988877 9999999999999999999988773 235689999999999999999999876
Q ss_pred ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l 570 (930)
.... ..+..++|+.... +...+..+++|+|+||+.+...+.. ..+.+.+++++|+||||++........ +....
T Consensus 83 ~~~~-~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~---i~~~~ 156 (773)
T PRK13766 83 NIPE-EKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVY---IAERY 156 (773)
T ss_pred CCCC-ceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHH---HHHHH
Confidence 5322 2345566665543 4455667889999999999776654 456788999999999999875432222 23333
Q ss_pred hhcCccceEEEEccccCHH---HHHHHhhhcCCCEEEE--------------------ccCCCCccc-------------
Q psy15524 571 KKQKPQFQSILLSATLTPA---VQRLAGMTLQNPIQID--------------------AADSTDIHN------------- 614 (930)
Q Consensus 571 ~~~~~~~q~vl~SAT~~~~---~~~l~~~~~~~~~~i~--------------------~~~~~~~~~------------- 614 (930)
.......++++||||+... +..+........+.+. +.-......
T Consensus 157 ~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l 236 (773)
T PRK13766 157 HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRL 236 (773)
T ss_pred HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 3333466799999998533 2222222211111110 000000000
Q ss_pred --Ccc-ceecCCC--------------ceEE-------------------------------------------------
Q psy15524 615 --TTD-SLVIPDS--------------LKQH------------------------------------------------- 628 (930)
Q Consensus 615 --~~~-~~~~~~~--------------~~~~------------------------------------------------- 628 (930)
... ....+.. +...
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~ 316 (773)
T PRK13766 237 KKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARS 316 (773)
T ss_pred HHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccc
Confidence 000 0000000 0000
Q ss_pred -----------------------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCc
Q psy15524 629 -----------------------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685 (930)
Q Consensus 629 -----------------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~ 685 (930)
........|...+..++...... ..+.++||||.+++.++.+++.|... ++
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~---~~~~kvlIF~~~~~t~~~L~~~L~~~---~~ 390 (773)
T PRK13766 317 SGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGK---NPDSRIIVFTQYRDTAEKIVDLLEKE---GI 390 (773)
T ss_pred cCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhc---CCCCeEEEEeCcHHHHHHHHHHHHhC---CC
Confidence 00011123444444444443321 23789999999999999999999654 67
Q ss_pred eEEEecCC--------CCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 686 AFFKLHGS--------MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 686 ~~~~lhg~--------~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
.+..+||. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|.
T Consensus 391 ~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~- 469 (773)
T PRK13766 391 KAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE- 469 (773)
T ss_pred ceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-
Confidence 77778876 999999999999999999999999999999999999999999999999999999999999864
Q ss_pred ceEEEEeCcc
Q psy15524 758 GSSLLFLIPS 767 (930)
Q Consensus 758 g~~~~~~~~~ 767 (930)
|.+++++...
T Consensus 470 ~~v~~l~~~~ 479 (773)
T PRK13766 470 GRVVVLIAKG 479 (773)
T ss_pred CEEEEEEeCC
Confidence 8888888753
No 99
>KOG0354|consensus
Probab=100.00 E-value=4.7e-31 Score=296.10 Aligned_cols=339 Identities=23% Similarity=0.347 Sum_probs=233.4
Q ss_pred CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..-.++.+|.+.+..+| |+|++|++|||+|||+++..-++.++.. .+..++|+++||+-|+.|+.+.+...+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 34478999999999999 9999999999999999999999998875 234789999999999999997777776
Q ss_pred ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-cHHHHHHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEI 569 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g-~~~~l~~i~~~ 569 (930)
.. +. .....||+....-...+....+|+|+||.-+.+.+.+.....++.+.++||||||+-.... +...+...+..
T Consensus 131 ~~--~~-~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~ 207 (746)
T KOG0354|consen 131 IP--YS-VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDL 207 (746)
T ss_pred Cc--cc-ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHh
Confidence 54 22 2334556554444556777899999999999888876444447899999999999976544 22333233322
Q ss_pred HhhcCccceEEEEccccCHHHHHHHhhhcC---C----------------------CEEEEccCC---------------
Q psy15524 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQ---N----------------------PIQIDAADS--------------- 609 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~---~----------------------~~~i~~~~~--------------- 609 (930)
-. ...|++++|||+............. + |+.+.....
T Consensus 208 k~---~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~ 284 (746)
T KOG0354|consen 208 KN---QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQ 284 (746)
T ss_pred hh---ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHH
Confidence 22 2349999999997543322111100 0 000000000
Q ss_pred ----------CCcc------------------cCccc--------------eecCCCce---------------------
Q psy15524 610 ----------TDIH------------------NTTDS--------------LVIPDSLK--------------------- 626 (930)
Q Consensus 610 ----------~~~~------------------~~~~~--------------~~~~~~~~--------------------- 626 (930)
.... ...+. ..+...++
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~ 364 (746)
T KOG0354|consen 285 QLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYL 364 (746)
T ss_pred HHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHH
Confidence 0000 00000 00000000
Q ss_pred -------------------EEEEEcC--chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCc
Q psy15524 627 -------------------QHFIVTP--PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685 (930)
Q Consensus 627 -------------------~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~ 685 (930)
+.+...+ ...++..+...+..... .....++|||+.+++.|..+..+|.+....++
T Consensus 365 ~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~---~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~i 441 (746)
T KOG0354|consen 365 KLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFE---QNPDSRTIIFVETRESALALKKWLLQLHELGI 441 (746)
T ss_pred HHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhh---cCCCccEEEEEehHHHHHHHHHHHHhhhhccc
Confidence 0000111 13345555555555443 22478999999999999999999886433334
Q ss_pred eEEEec--------CCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 686 AFFKLH--------GSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 686 ~~~~lh--------g~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
....+- .+|+|.++.+++++|++|+.+|||||+++++|+||+.|++||-||.-.++...+||.|| ||+ +.
T Consensus 442 r~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~n 519 (746)
T KOG0354|consen 442 KAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RN 519 (746)
T ss_pred ccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cC
Confidence 333333 38999999999999999999999999999999999999999999999999999999999 996 47
Q ss_pred ceEEEEeCccc
Q psy15524 758 GSSLLFLIPSE 768 (930)
Q Consensus 758 g~~~~~~~~~e 768 (930)
|.++++++..+
T Consensus 520 s~~vll~t~~~ 530 (746)
T KOG0354|consen 520 SKCVLLTTGSE 530 (746)
T ss_pred CeEEEEEcchh
Confidence 88888888543
No 100
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=2e-30 Score=298.25 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHh----cCCCCCC---CHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 397 GIHPFMKKNLNE----GMNITQV---TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 397 ~l~~~~~~~l~~----~~~~~~~---~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
++.+++.+.+.- .+||..| ||+|.++||.++.++|++++|+||+|||++|++|++..+.. +..+
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~~v 138 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GKPV 138 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cCCe
Confidence 677777776652 4688887 99999999999999999999999999999999999988764 2348
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccCCccc-------c
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLKF-------S 541 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~~~~-------~ 541 (930)
+||+||++||.|+++.+..++...+ +.++++.||.+...+.... +++|+|+|||+| .++++.. .+.+ +
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr 214 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGR 214 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHHhhcc
Confidence 9999999999999999999987665 6677889998877665443 699999999999 9999863 2333 3
Q ss_pred cceEEEEecchhhh
Q psy15524 542 KVEHLVLDEADRIL 555 (930)
Q Consensus 542 ~l~~lVlDEah~l~ 555 (930)
.+.++||||||.|+
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 56899999999986
No 101
>KOG0328|consensus
Probab=99.98 E-value=1.8e-32 Score=266.24 Aligned_cols=244 Identities=27% Similarity=0.450 Sum_probs=211.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.||+.|+.+|+.|++.++.|+|++++|..|+|||.+|.+.+++.+.. .....++|+|+|||||+.|+.+.+..+
T Consensus 45 yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~------~~r~tQ~lilsPTRELa~Qi~~vi~al 118 (400)
T KOG0328|consen 45 YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI------SVRETQALILSPTRELAVQIQKVILAL 118 (400)
T ss_pred hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc------ccceeeEEEecChHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999987754 234578999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.+++ +.+..+.||.+..+..+.+.-+.+++.|||+++.+++.+ +.+..+.++++|+||||.|++.||..++..+.+.
T Consensus 119 g~~mn-vq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~ 196 (400)
T KOG0328|consen 119 GDYMN-VQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRY 196 (400)
T ss_pred ccccc-ceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHHHHHh
Confidence 98777 677778899998888888889999999999999999987 6777899999999999999999999888887776
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++... |.+++|||+|.
T Consensus 197 lp~~~----------------------------------------------------------------Qvv~~SATlp~ 212 (400)
T KOG0328|consen 197 LPPGA----------------------------------------------------------------QVVLVSATLPH 212 (400)
T ss_pred CCCCc----------------------------------------------------------------eEEEEeccCcH
Confidence 64332 88888888999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcch-hHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.+....+.++.+|+.+-+...+ ...+.|.++|+.++.++ |...|.++... -.-.+++|||||+
T Consensus 213 eilemt~kfmtdpvrilvkrde---------ltlEgIKqf~v~ve~EewKfdtLcdLYd~-------LtItQavIFcnTk 276 (400)
T KOG0328|consen 213 EILEMTEKFMTDPVRILVKRDE---------LTLEGIKQFFVAVEKEEWKFDTLCDLYDT-------LTITQAVIFCNTK 276 (400)
T ss_pred HHHHHHHHhcCCceeEEEecCC---------CchhhhhhheeeechhhhhHhHHHHHhhh-------hehheEEEEeccc
Confidence 9999999999999988766554 23456999999988766 99988887732 2446899999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
..++.+.+.+++.
T Consensus 277 ~kVdwLtekm~~~ 289 (400)
T KOG0328|consen 277 RKVDWLTEKMREA 289 (400)
T ss_pred chhhHHHHHHHhh
Confidence 9999999988764
No 102
>KOG0339|consensus
Probab=99.98 E-value=9e-32 Score=280.83 Aligned_cols=249 Identities=30% Similarity=0.470 Sum_probs=216.1
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
|+.|||+|.+++|..+.|+|++.+|.||||||.+|+.|++.++..+.. ....+|+-.||++||++||.|++.++++++.
T Consensus 243 y~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e-L~~g~gPi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE-LKPGEGPIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred cccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh-hcCCCCCeEEEEeccHHHHHHHHHHHHHhhh
Confidence 778999999999999999999999999999999999999999987433 3346789999999999999999999999998
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.++ +.+.+++||...-++...|..++.|+||||+||++++.. +...+.++.++|+||+|+|++.||+++++.|...++
T Consensus 322 ~yg-l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 322 AYG-LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred hcc-ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcC
Confidence 777 778888899888889999999999999999999999876 777899999999999999999999999888776553
Q ss_pred hcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHH
Q psy15524 163 KQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAV 242 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~ 242 (930)
+++|+++||+|++..+
T Consensus 400 ----------------------------------------------------------------pdrQtllFsaTf~~kI 415 (731)
T KOG0339|consen 400 ----------------------------------------------------------------PDRQTLLFSATFKKKI 415 (731)
T ss_pred ----------------------------------------------------------------CcceEEEeeccchHHH
Confidence 3459999999999999
Q ss_pred HHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEecccc
Q psy15524 243 QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDM 321 (930)
Q Consensus 243 ~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~ 321 (930)
+.+++.+|.+|+.+....-. .....|.|.+.+++. ..|+..|+..|.+ ....+++|||+.-+.+
T Consensus 416 e~lard~L~dpVrvVqg~vg---------ean~dITQ~V~V~~s~~~Kl~wl~~~L~~------f~S~gkvlifVTKk~~ 480 (731)
T KOG0339|consen 416 EKLARDILSDPVRVVQGEVG---------EANEDITQTVSVCPSEEKKLNWLLRHLVE------FSSEGKVLIFVTKKAD 480 (731)
T ss_pred HHHHHHHhcCCeeEEEeehh---------ccccchhheeeeccCcHHHHHHHHHHhhh------hccCCcEEEEEeccCC
Confidence 99999999999887655332 124678999888875 5688888877743 4566799999999999
Q ss_pred hhhhHHHHhhhh
Q psy15524 322 ADYHTELLSTKK 333 (930)
Q Consensus 322 ~~~l~~~L~~~~ 333 (930)
+++++..|+-++
T Consensus 481 ~e~i~a~Lklk~ 492 (731)
T KOG0339|consen 481 AEEIAANLKLKG 492 (731)
T ss_pred HHHHHHHhcccc
Confidence 999999987554
No 103
>KOG0336|consensus
Probab=99.98 E-value=3.4e-32 Score=276.81 Aligned_cols=252 Identities=31% Similarity=0.470 Sum_probs=214.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|||+|.+|||.++.|.|++.+|.||+|||++|++|.+.++..+.......+++.+|++.||++|+.|+.-++.+.
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 59999999999999999999999999999999999999999999877665555567888999999999999999888777
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
. +......|++||.+..++.+.+.++++|+++||++|.++... +.+.+..+.|+|+||||.|+|.||+++++.|+-.
T Consensus 318 s--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 318 S--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred h--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 5 334778889999999999999999999999999999998765 8889999999999999999999999999887744
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++ +++|+++-|||||+
T Consensus 395 iR----------------------------------------------------------------PDRqtvmTSATWP~ 410 (629)
T KOG0336|consen 395 IR----------------------------------------------------------------PDRQTVMTSATWPE 410 (629)
T ss_pred cC----------------------------------------------------------------CcceeeeecccCch
Confidence 32 34599999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+.+|+.+|+.+|+.+.+..-. +..-..+.|.+++..+.+|++.+-.++. ......++||||.++.
T Consensus 411 ~VrrLa~sY~Kep~~v~vGsLd--------L~a~~sVkQ~i~v~~d~~k~~~~~~f~~------~ms~ndKvIiFv~~K~ 476 (629)
T KOG0336|consen 411 GVRRLAQSYLKEPMIVYVGSLD--------LVAVKSVKQNIIVTTDSEKLEIVQFFVA------NMSSNDKVIIFVSRKV 476 (629)
T ss_pred HHHHHHHHhhhCceEEEecccc--------eeeeeeeeeeEEecccHHHHHHHHHHHH------hcCCCceEEEEEechh
Confidence 9999999999999888655433 2234568888877777888876666663 3556689999999999
Q ss_pred chhhhHHHHhhhh
Q psy15524 321 MADYHTELLSTKK 333 (930)
Q Consensus 321 ~~~~l~~~L~~~~ 333 (930)
.|+.+..-+.-.|
T Consensus 477 ~AD~LSSd~~l~g 489 (629)
T KOG0336|consen 477 MADHLSSDFCLKG 489 (629)
T ss_pred hhhhccchhhhcc
Confidence 8888877765443
No 104
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=1.2e-30 Score=297.91 Aligned_cols=247 Identities=32% Similarity=0.467 Sum_probs=195.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++|+.+++|+|++++||||+|||++|++|+++++...... ...+.++||++||++|+.|+++.+..+
T Consensus 19 ~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil~Pt~eLa~Q~~~~~~~l 96 (434)
T PRK11192 19 KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILILTPTRELAMQVADQAREL 96 (434)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEECCcHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999998753221 223568999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+ +.+..++|+.....+...+..+++|+|+||++|++++.. ..+.+.++++|||||||+|++++|...+..+...
T Consensus 97 ~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~ 174 (434)
T PRK11192 97 AKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIETIAAE 174 (434)
T ss_pred HccCC-cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHh
Confidence 87665 788889999988888888888899999999999999876 6677899999999999999999999888777654
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. ..|+++|||| ++.
T Consensus 175 ~~~---~~q~~~~SAT-------------------------------------------------------------~~~ 190 (434)
T PRK11192 175 TRW---RKQTLLFSAT-------------------------------------------------------------LEG 190 (434)
T ss_pred Ccc---ccEEEEEEee-------------------------------------------------------------cCH
Confidence 432 2244555555 442
Q ss_pred -HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 241 -AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 241 -~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
.+..+...++.++..+...... .....+.+.+..++. ..|...|..++ ......++||||++
T Consensus 191 ~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~i~~~~~~~~~~~~k~~~l~~l~-------~~~~~~~~lVF~~s 254 (434)
T PRK11192 191 DAVQDFAERLLNDPVEVEAEPSR---------RERKKIHQWYYRADDLEHKTALLCHLL-------KQPEVTRSIVFVRT 254 (434)
T ss_pred HHHHHHHHHHccCCEEEEecCCc---------ccccCceEEEEEeCCHHHHHHHHHHHH-------hcCCCCeEEEEeCC
Confidence 2455555566667666544332 123457777776654 56777777777 33456799999999
Q ss_pred ccchhhhHHHHhh
Q psy15524 319 QDMADYHTELLST 331 (930)
Q Consensus 319 ~~~~~~l~~~L~~ 331 (930)
++.++.++..|+.
T Consensus 255 ~~~~~~l~~~L~~ 267 (434)
T PRK11192 255 RERVHELAGWLRK 267 (434)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999999975
No 105
>KOG0353|consensus
Probab=99.97 E-value=9.4e-31 Score=263.54 Aligned_cols=337 Identities=20% Similarity=0.284 Sum_probs=252.2
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEE
Q psy15524 393 EEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472 (930)
Q Consensus 393 ~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil 472 (930)
++| +.+....+.|++.|..+.++|.|..+|++.+.|+|+++..|||.||++||.+|++- ....+||+
T Consensus 74 d~f-pws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~------------adg~alvi 140 (695)
T KOG0353|consen 74 DDF-PWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC------------ADGFALVI 140 (695)
T ss_pred CCC-CCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh------------cCCceEee
Confidence 345 57777888888889999999999999999999999999999999999999999983 25569999
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHH-----h--cCCcEEEECchhHHHh---hhc-cCCcccc
Q psy15524 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI-----R--KGISILVATPGRLLDH---CKH-TETLKFS 541 (930)
Q Consensus 473 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~-----~--~~~~Ilv~Tp~rl~~~---l~~-~~~~~~~ 541 (930)
+|...|+..+.-.++.++-....+. ... .+.+..+. . ....+++.||+++... +.+ .+.+...
T Consensus 141 ~plislmedqil~lkqlgi~as~ln-----ans-ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~ 214 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQLGIDASMLN-----ANS-SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAG 214 (695)
T ss_pred chhHHHHHHHHHHHHHhCcchhhcc-----Ccc-cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999888888875433221 111 12222221 1 2356999999988432 111 1344567
Q ss_pred cceEEEEecchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcC--CCEEEEccCCCCcccCcc
Q psy15524 542 KVEHLVLDEADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ--NPIQIDAADSTDIHNTTD 617 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~--~~~~i~~~~~~~~~~~~~ 617 (930)
.+.++-+||+|+...|| |+.++. .+..|++..++..+++++||.++.+.+-++..+- ........
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~-~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~---------- 283 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYK-ALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG---------- 283 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchH-HHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc----------
Confidence 78999999999999999 555544 4566666667889999999998876554443321 11111110
Q ss_pred ceecCCCceEEEEEcCc--hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCC
Q psy15524 618 SLVIPDSLKQHFIVTPP--KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMS 695 (930)
Q Consensus 618 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~ 695 (930)
+. ...+...+..-|. ++-...++..+.. ... ++..||||-++..++.++..|+.. |+....+|+.|.
T Consensus 284 -fn-r~nl~yev~qkp~n~dd~~edi~k~i~~---~f~---gqsgiiyc~sq~d~ekva~alkn~---gi~a~~yha~le 352 (695)
T KOG0353|consen 284 -FN-RPNLKYEVRQKPGNEDDCIEDIAKLIKG---DFA---GQSGIIYCFSQKDCEKVAKALKNH---GIHAGAYHANLE 352 (695)
T ss_pred -cC-CCCceeEeeeCCCChHHHHHHHHHHhcc---ccC---CCcceEEEeccccHHHHHHHHHhc---CccccccccccC
Confidence 00 1122222222221 2223333333332 222 678899999999999999999986 888889999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHh-----------------------------
Q psy15524 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH----------------------------- 746 (930)
Q Consensus 696 ~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~q----------------------------- 746 (930)
+++|..+-+.|..|++.|+|+|-++++|+|-|+|++|||..+|.|++.|.|
T Consensus 353 p~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilev 432 (695)
T KOG0353|consen 353 PEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEV 432 (695)
T ss_pred ccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhh
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred --------------hhcccccCCCCceEEEEeCcccHH
Q psy15524 747 --------------RVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 747 --------------r~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
..||+||.+.+..|++++.-.+..
T Consensus 433 ctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 433 CTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred hccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 789999999999999998755543
No 106
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=3.7e-30 Score=309.78 Aligned_cols=304 Identities=21% Similarity=0.301 Sum_probs=207.3
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc----CHHHHHHHHHHHHHhhccCCCc
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP----TRELALQTLEIFTKLCKSFTWI 496 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P----treLa~Q~~~~~~~~~~~~~~~ 496 (930)
+.+..+.+++.++++|+||||||. .+|.+-.-.. .+....+++.-| +++||.|+++++....+.
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~---- 148 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG------RGVKGLIGHTQPRRLAARTVANRIAEELETELGG---- 148 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc----
Confidence 344445556678899999999999 5784422111 111123344446 568888888877653221
Q ss_pred ceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecch-hhhhcCcHHHHHHHHHHHhhcCc
Q psy15524 497 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERDIAEFLEILKKQKP 575 (930)
Q Consensus 497 ~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah-~l~~~g~~~~l~~i~~~l~~~~~ 575 (930)
.+++-+...+ ....+.+|+|+|||+|++++... ..++++++||||||| +.++.+|.. ..+...++. .+
T Consensus 149 ~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLL--g~Lk~lL~~-rp 217 (1294)
T PRK11131 149 CVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFIL--GYLKELLPR-RP 217 (1294)
T ss_pred eeceeecCcc------ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHH--HHHHHhhhc-CC
Confidence 1222222211 11356899999999999998753 348999999999999 688888753 223333433 35
Q ss_pred cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc------hhhHHHHHHHHHhhc
Q psy15524 576 QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP------KLRLVALASFILGKC 649 (930)
Q Consensus 576 ~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~ 649 (930)
+.|+++||||++. ..+.+.+...|+ +.+.+.. ..+...|..... ...+..+...+...+
T Consensus 218 dlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~------------~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~ 282 (1294)
T PRK11131 218 DLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT------------YPVEVRYRPIVEEADDTERDQLQAIFDAVDELG 282 (1294)
T ss_pred CceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc------------ccceEEEeecccccchhhHHHHHHHHHHHHHHh
Confidence 7899999999975 456655555553 4443221 012334433322 122333333333222
Q ss_pred cCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCc
Q psy15524 650 QNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV 729 (930)
Q Consensus 650 ~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v 729 (930)
. ...+.+|||+++.++++.+++.|.........+..+||+|++.+|..+++. .|..+||||||++++|||+|+|
T Consensus 283 ~----~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI 356 (1294)
T PRK11131 283 R----EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGI 356 (1294)
T ss_pred c----CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcc
Confidence 1 236789999999999999999998753334567889999999999999986 4778999999999999999999
Q ss_pred cEEEEec---------------CC---CChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 730 DWIVQYT---------------AP---SSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 730 ~~VI~~~---------------~p---~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
++||+++ .| .|..+|.||+|||||. .+|.|+.++++.+.
T Consensus 357 ~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 357 KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred eEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 9999986 23 4568999999999999 69999999997654
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.3e-29 Score=290.71 Aligned_cols=342 Identities=18% Similarity=0.196 Sum_probs=231.7
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+.+|. .|+++|--.--.+..| -|++++||+|||+++.+|++-.... |..+-|++||.+||.|.
T Consensus 71 rEa~~R~lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd 138 (830)
T PRK12904 71 REASKRVLGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRD 138 (830)
T ss_pred HHHHHHHhCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHH
Confidence 3444444454 4555665554444444 5999999999999999999744332 44577999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccCC-----cccccceEEEEecchhhh-
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTET-----LKFSKVEHLVLDEADRIL- 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~-----~~~~~l~~lVlDEah~l~- 555 (930)
++.+..++..++ +.+++++|+.+....... ..++|+|+||++| .|+++.... ..++.+.++|+||||.++
T Consensus 139 ~e~~~~l~~~LG-lsv~~i~~~~~~~er~~~--y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLI 215 (830)
T PRK12904 139 AEWMGPLYEFLG-LSVGVILSGMSPEERREA--YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILI 215 (830)
T ss_pred HHHHHHHHhhcC-CeEEEEcCCCCHHHHHHh--cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhee
Confidence 999999998765 566788888776544433 4699999999999 899876432 246789999999999986
Q ss_pred h---------------cCcHHHHHHHHHHHhhc-----CccceEEEEccccCHHHH-----------------HHHh---
Q psy15524 556 D---------------QGYERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQ-----------------RLAG--- 595 (930)
Q Consensus 556 ~---------------~g~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~-----------------~l~~--- 595 (930)
| ..+...+..++..+... ....+.+.+|..-...++ .+..
T Consensus 216 DeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL 295 (830)
T PRK12904 216 DEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQAL 295 (830)
T ss_pred ccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHH
Confidence 1 11233444455554321 112233444332100000 0000
Q ss_pred ---hh-cCCCEEEE-------ccCC---------------------------------------------------CCc-
Q psy15524 596 ---MT-LQNPIQID-------AADS---------------------------------------------------TDI- 612 (930)
Q Consensus 596 ---~~-~~~~~~i~-------~~~~---------------------------------------------------~~~- 612 (930)
.. .+|-.++- +... .-.
T Consensus 296 ~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa 375 (830)
T PRK12904 296 RAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTA 375 (830)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCc
Confidence 00 11111110 0000 000
Q ss_pred ---------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHH
Q psy15524 613 ---------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELL 677 (930)
Q Consensus 613 ---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l 677 (930)
-...+...+|...+.. .+......|..++...+..... .+.|+||||+|.+.++.+++.|
T Consensus 376 ~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~-----~grpVLIft~Si~~se~Ls~~L 450 (830)
T PRK12904 376 DTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHK-----KGQPVLVGTVSIEKSELLSKLL 450 (830)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHH
Confidence 0001122333322211 2344556688888887765322 2789999999999999999999
Q ss_pred hhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCc----------------------------
Q psy15524 678 STVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV---------------------------- 729 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v---------------------------- 729 (930)
.+. ++++..+||. +.+|+..+.+|+.+...|+||||+|+||+||+==
T Consensus 451 ~~~---gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (830)
T PRK12904 451 KKA---GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQE 525 (830)
T ss_pred HHC---CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhh
Confidence 875 8899999995 7899999999999999999999999999999632
Q ss_pred ----------cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 730 ----------DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 730 ----------~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
-+||....|.|..--.|-.||+||.|.+|.+.+|++-++.
T Consensus 526 ~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 526 EHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred hhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2799999999999999999999999999999999996543
No 108
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1e-29 Score=292.53 Aligned_cols=343 Identities=18% Similarity=0.208 Sum_probs=232.6
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+.+|+ .|+++|.-+--.+..|+ |+++.||+|||+++.+|++..... |..+-|++||..||.|
T Consensus 69 vrEa~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~R 136 (796)
T PRK12906 69 AREGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSR 136 (796)
T ss_pred HHHHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHh
Confidence 44455555564 56666665554554554 999999999999999999987765 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~ 555 (930)
-++.+.+++..++ +.+++++|+..... ++....++|+++|...+ .|.|+.. .....+.+.+.|+||+|.++
T Consensus 137 d~e~~~~~~~~LG-l~vg~i~~~~~~~~--r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 137 DATEMGELYRWLG-LTVGLNLNSMSPDE--KRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred hHHHHHHHHHhcC-CeEEEeCCCCCHHH--HHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999998877 45667777654433 33445799999999876 3444432 12235678999999999875
Q ss_pred -hc---------------CcHHHHHHHHHHHhhcC----------------ccceEEEEccc----------cC-----H
Q psy15524 556 -DQ---------------GYERDIAEFLEILKKQK----------------PQFQSILLSAT----------LT-----P 588 (930)
Q Consensus 556 -~~---------------g~~~~l~~i~~~l~~~~----------------~~~q~vl~SAT----------~~-----~ 588 (930)
|. .+...+..++..+.... ...+.+.++.. ++ .
T Consensus 214 iDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~ 293 (796)
T PRK12906 214 IDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSE 293 (796)
T ss_pred eccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCch
Confidence 10 12233444444443210 01222333321 00 0
Q ss_pred H--HHHHHhh-------hcCCCEEEE-------ccCC-------------------------------------------
Q psy15524 589 A--VQRLAGM-------TLQNPIQID-------AADS------------------------------------------- 609 (930)
Q Consensus 589 ~--~~~l~~~-------~~~~~~~i~-------~~~~------------------------------------------- 609 (930)
. ...+... +.++-.++- +...
T Consensus 294 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr 373 (796)
T PRK12906 294 NTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFR 373 (796)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHH
Confidence 0 0011100 011111110 0000
Q ss_pred --------CC-c---------ccCccceecCCCceEEE------EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEec
Q psy15524 610 --------TD-I---------HNTTDSLVIPDSLKQHF------IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 665 (930)
Q Consensus 610 --------~~-~---------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~ 665 (930)
.- . ........+|...+... +......|..++...+..... .+.++||||+
T Consensus 374 ~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~-----~g~pvLI~t~ 448 (796)
T PRK12906 374 MYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHA-----KGQPVLVGTV 448 (796)
T ss_pred hcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEEeC
Confidence 00 0 00011223443332222 334456677788877765322 2789999999
Q ss_pred chhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCC---CCcc-----EEEEecC
Q psy15524 666 TQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDL---PLVD-----WIVQYTA 737 (930)
Q Consensus 666 s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDi---p~v~-----~VI~~~~ 737 (930)
|++.++.++..|.+. ++++..+||++.+.++..+.++++.|. |+|||++|+||+|| ++|. +||+++.
T Consensus 449 si~~se~ls~~L~~~---gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~ 523 (796)
T PRK12906 449 AIESSERLSHLLDEA---GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTER 523 (796)
T ss_pred cHHHHHHHHHHHHHC---CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeec
Confidence 999999999999885 888999999999999999999998888 99999999999999 4899 9999999
Q ss_pred CCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 738 PSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 738 p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
|.|.+.|.|++|||||.|.+|.+.+|++.++.
T Consensus 524 pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 524 HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 99999999999999999999999999997654
No 109
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=3.2e-30 Score=296.70 Aligned_cols=252 Identities=29% Similarity=0.408 Sum_probs=194.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcC-CCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||..||++|.++|+.+++|+|+++++|||||||++|++|+++.+....... ...++.++|||+||+||+.|+.+.++.
T Consensus 105 ~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 105 LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999987643221 112357899999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
+....+ +.+..++||.....+...+. ..++|+|+||++|+.+... +...++++++|||||+|++++++|.+.+..++
T Consensus 185 l~~~~~-~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 185 LTKYTG-LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 262 (475)
T ss_pred hhccCC-CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEEechHHHHHhcccHHHHHHHH
Confidence 987655 66777888877666665554 4689999999999988765 56678999999999999999999988888877
Q ss_pred HHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEeccc
Q psy15524 159 EILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~ 238 (930)
..++... +. |++++|||+
T Consensus 263 ~~~~~~~-~~-------------------------------------------------------------q~i~~SAT~ 280 (475)
T PRK01297 263 RQTPRKE-ER-------------------------------------------------------------QTLLFSATF 280 (475)
T ss_pred HhCCCCC-Cc-------------------------------------------------------------eEEEEEeec
Confidence 6553221 12 555555555
Q ss_pred chHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 239 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 239 ~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
+..+..++..++.++..+.+.... ....++.+++..+...+|...+..++ ......++||||++
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~k~~~l~~ll-------~~~~~~~~IVF~~s 344 (475)
T PRK01297 281 TDDVMNLAKQWTTDPAIVEIEPEN---------VASDTVEQHVYAVAGSDKYKLLYNLV-------TQNPWERVMVFANR 344 (475)
T ss_pred CHHHHHHHHHhccCCEEEEeccCc---------CCCCcccEEEEEecchhHHHHHHHHH-------HhcCCCeEEEEeCC
Confidence 555556666666666665443322 11244667777777777888888777 33455799999999
Q ss_pred ccchhhhHHHHhhh
Q psy15524 319 QDMADYHTELLSTK 332 (930)
Q Consensus 319 ~~~~~~l~~~L~~~ 332 (930)
++.++.++..|...
T Consensus 345 ~~~~~~l~~~L~~~ 358 (475)
T PRK01297 345 KDEVRRIEERLVKD 358 (475)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999654
No 110
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=8.6e-30 Score=300.62 Aligned_cols=327 Identities=17% Similarity=0.221 Sum_probs=219.3
Q ss_pred CCCHHHHHhHHhhhcC---CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 414 QVTTVQQLSIQPILDG---GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~---~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
.+|+.|+++++.+..+ +++++.|+||||||.+|+.++.+.+.. |.++||++||++|+.|+++.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 6899999999999874 789999999999999999888777643 6789999999999999999998865
Q ss_pred ccCCCcceEEEeCCCchHHH---HHHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHH---HH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSE---KARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYER---DI 563 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~---~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~---~l 563 (930)
+ ..+..++|+.+.... +..+. ...+|+|+||+.+. ..+++++++|+||+|.....+... ..
T Consensus 215 g----~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 215 G----APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred C----CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 3 245567777654332 22333 35799999998763 346789999999999765432110 11
Q ss_pred HHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCch-------h
Q psy15524 564 AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK-------L 636 (930)
Q Consensus 564 ~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 636 (930)
..+. .+.....+.+++++|||++......+... ....+........ ...| ....+..... .
T Consensus 283 r~va-~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~------~~~p---~v~~id~~~~~~~~~~~~ 350 (679)
T PRK05580 283 RDLA-VVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGG------ARLP---EVEIIDMRELLRGENGSF 350 (679)
T ss_pred HHHH-HHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEecccccc------CCCC---eEEEEechhhhhhcccCC
Confidence 1211 11222347899999999886554443321 1112221111000 0000 0000000000 0
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecch-------------------------------------------------
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQ------------------------------------------------- 667 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~------------------------------------------------- 667 (930)
-...+...+.+.... +.++|||++.+
T Consensus 351 ls~~l~~~i~~~l~~-----g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp 425 (679)
T PRK05580 351 LSPPLLEAIKQRLER-----GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACP 425 (679)
T ss_pred CCHHHHHHHHHHHHc-----CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCC
Confidence 012233333333221 45677776541
Q ss_pred -----------hhHHHHHHHHhhhcCCCceEEEecCCCCH--HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE
Q psy15524 668 -----------DMADYHTELLSTVLGENIAFFKLHGSMSQ--SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734 (930)
Q Consensus 668 -----------~~~~~~~~~l~~~~~~~~~~~~lhg~~~~--~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~ 734 (930)
..++.+++.|.+.++ +..+..+|+++.+ .+++.++++|++|+.+|||+|+++++|+|+|+|++|+.
T Consensus 426 ~Cg~~~l~~~g~G~e~~~e~l~~~fp-~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~i 504 (679)
T PRK05580 426 ECGSTDLVPVGPGTERLEEELAELFP-EARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGV 504 (679)
T ss_pred CCcCCeeEEeeccHHHHHHHHHHhCC-CCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEE
Confidence 123456666766654 6788899999974 57999999999999999999999999999999999965
Q ss_pred ecC--CCC----------hhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 735 YTA--PSS----------STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 735 ~~~--p~s----------~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
.|. +.+ ...|+|++||+||.+..|.+++.....+...++.+.+.+
T Consensus 505 l~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d 561 (679)
T PRK05580 505 LDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQD 561 (679)
T ss_pred EcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCC
Confidence 554 332 257999999999999999999988877766677666543
No 111
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=4.4e-30 Score=295.19 Aligned_cols=315 Identities=17% Similarity=0.174 Sum_probs=207.3
Q ss_pred CCCCHHHHHhHHhhhc-C--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 413 TQVTTVQQLSIQPILD-G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~-~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
..++|+|.+++..+.. | +..++++|||+|||++.+..+. .+ +.++|||||+.+|+.||.+.+.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 4689999999999884 3 3689999999999999765543 22 245999999999999999999987
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc-------CCcccccceEEEEecchhhhhcCcHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRILDQGYERD 562 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-------~~~~~~~l~~lVlDEah~l~~~g~~~~ 562 (930)
+.. .......++|+.... ......|+|+|+..+.....+. ..+.-..++++|+||||++....|
T Consensus 322 ~~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~f--- 392 (732)
T TIGR00603 322 STI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMF--- 392 (732)
T ss_pred cCC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHH---
Confidence 632 223344555653221 1234789999998664322211 112234688999999999865433
Q ss_pred HHHHHHHHhhcCccceEEEEccccCHHHHH--HHhhhcCCCEEEEccCCCCcccCccceecCCCceE-------------
Q psy15524 563 IAEFLEILKKQKPQFQSILLSATLTPAVQR--LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ------------- 627 (930)
Q Consensus 563 l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~--l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------------- 627 (930)
..++..+. ....+++|||+...-.. .....+ .|......-.... ...+..+-....
T Consensus 393 -r~il~~l~----a~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi---~~G~LA~~~~~ev~v~~t~~~~~~y 463 (732)
T TIGR00603 393 -RRVLTIVQ----AHCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQ---KKGFIANVQCAEVWCPMTPEFYREY 463 (732)
T ss_pred -HHHHHhcC----cCcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHH---hCCccccceEEEEEecCCHHHHHHH
Confidence 34444443 23469999998632111 111111 2322221110000 000000000000
Q ss_pred --------EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHH
Q psy15524 628 --------HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 628 --------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R 699 (930)
.........|+..+..++..+. ..+.++||||.+.+.++.+++.|. .. .+||++++.+|
T Consensus 464 l~~~~~~k~~l~~~np~K~~~~~~Li~~he-----~~g~kiLVF~~~~~~l~~~a~~L~------~~--~I~G~ts~~ER 530 (732)
T TIGR00603 464 LRENSRKRMLLYVMNPNKFRACQFLIRFHE-----QRGDKIIVFSDNVFALKEYAIKLG------KP--FIYGPTSQQER 530 (732)
T ss_pred HHhcchhhhHHhhhChHHHHHHHHHHHHHh-----hcCCeEEEEeCCHHHHHHHHHHcC------Cc--eEECCCCHHHH
Confidence 0001122234444444444321 137899999999998888877663 23 46999999999
Q ss_pred HHHHHHhhcC-CCcEEEeccccccccCCCCccEEEEecCC-CChhhHHhhhcccccCCCCceE-------EEEeCcccHH
Q psy15524 700 TEVFKTFRSV-KSGVLICTDVAARGLDLPLVDWIVQYTAP-SSSTDYVHRVGRTARVGHEGSS-------LLFLIPSEVK 770 (930)
Q Consensus 700 ~~v~~~F~~~-~~~vLv~T~~~~~GlDip~v~~VI~~~~p-~s~~~y~qr~GRagR~g~~g~~-------~~~~~~~e~~ 770 (930)
..++++|++| ..++||+|+++++|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ +.|++++..+
T Consensus 531 ~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 531 MQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9999999975 78999999999999999999999999987 5999999999999999887775 6777776543
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.2e-29 Score=286.48 Aligned_cols=333 Identities=18% Similarity=0.180 Sum_probs=229.1
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
|+|+-.|.|..+.-.+.-|++++||+|||++|.+|++..... |..|.||+|+++||.|.++.+..++..++
T Consensus 81 m~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 445555556666556667999999999999999999977754 56699999999999999999999998766
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccCCcc-----cccceEEEEecchhhhhc-----------
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLK-----FSKVEHLVLDEADRILDQ----------- 557 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~~~-----~~~l~~lVlDEah~l~~~----------- 557 (930)
+.++++.++.+. ..++-..+++|+++||+++ .++++..-.+. .+.+.++|+||||.++-.
T Consensus 152 -lsv~~i~~~~~~--~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 152 -LTVGINVAGLGQ--QEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred -CeEEEecCCCCH--HHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 456677787664 3334445899999999999 88887642333 378999999999998621
Q ss_pred -----CcHHHHHHHHHHHhhc----------------CccceEEEEccccCHHHHHHH----------------------
Q psy15524 558 -----GYERDIAEFLEILKKQ----------------KPQFQSILLSATLTPAVQRLA---------------------- 594 (930)
Q Consensus 558 -----g~~~~l~~i~~~l~~~----------------~~~~q~vl~SAT~~~~~~~l~---------------------- 594 (930)
.+...+..++..|... ....+.+.+|-.=...+..+.
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 1223333334444321 012223333321001111110
Q ss_pred ------h---hhcCCCEEEE-------ccCC-----------------------------CC------------------
Q psy15524 595 ------G---MTLQNPIQID-------AADS-----------------------------TD------------------ 611 (930)
Q Consensus 595 ------~---~~~~~~~~i~-------~~~~-----------------------------~~------------------ 611 (930)
+ .+.++-.++- ++.. ..
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence 0 0011111110 0000 00
Q ss_pred ----c----------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHH
Q psy15524 612 ----I----------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMAD 671 (930)
Q Consensus 612 ----~----------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~ 671 (930)
. -...+...+|...... .+......|..++...+..... .+.++||||.|.+.++
T Consensus 389 GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~-----~GrpVLV~t~sv~~se 463 (908)
T PRK13107 389 GMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRE-----RGQPVLVGTVSIEQSE 463 (908)
T ss_pred cccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHH-----cCCCEEEEeCcHHHHH
Confidence 0 0001122333222211 2334456677777777765433 2889999999999999
Q ss_pred HHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCC-----------------------
Q psy15524 672 YHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL----------------------- 728 (930)
Q Consensus 672 ~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~----------------------- 728 (930)
.++.+|... ++.+..+||++++.+|..+.++|+.|. |+|||++++||+||.=
T Consensus 464 ~ls~~L~~~---gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~ 538 (908)
T PRK13107 464 LLARLMVKE---KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIK 538 (908)
T ss_pred HHHHHHHHC---CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHH
Confidence 999999985 888999999999999999999999999 9999999999999951
Q ss_pred ---------c-----cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 729 ---------V-----DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 729 ---------v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
| -+||....+.|..--.|..||+||.|.+|.+.+|++-++.
T Consensus 539 ~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 539 ADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 2799999999999999999999999999999999996554
No 113
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.5e-28 Score=297.19 Aligned_cols=306 Identities=19% Similarity=0.253 Sum_probs=210.3
Q ss_pred hHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEE
Q psy15524 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWL 501 (930)
Q Consensus 422 ~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~ 501 (930)
.+..+.+++.++++|+||||||. .+|.+-.-.. ......+++.-|.|--|..++..+.+..+......+++-
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~------~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTT--QLPKICLELG------RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC------CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 34444456678999999999998 4675532211 112235666779888888877776665543222223332
Q ss_pred eCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecch-hhhhcCcHHH-HHHHHHHHhhcCccceE
Q psy15524 502 TGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERD-IAEFLEILKKQKPQFQS 579 (930)
Q Consensus 502 ~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah-~l~~~g~~~~-l~~i~~~l~~~~~~~q~ 579 (930)
+...+.. ..+..|.|+|||+|+..+... ..++++++||||||| +.++.+|.-. +..+ +. ..++.|+
T Consensus 147 vR~~~~~------s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~i---l~-~rpdLKl 214 (1283)
T TIGR01967 147 VRFHDQV------SSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQL---LP-RRPDLKI 214 (1283)
T ss_pred EcCCccc------CCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHH---Hh-hCCCCeE
Confidence 2222221 245789999999999988763 347899999999999 6888776532 3333 22 2357899
Q ss_pred EEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc------hhhHHHHHHHHHhhccCCC
Q psy15524 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP------KLRLVALASFILGKCQNVN 653 (930)
Q Consensus 580 vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~ 653 (930)
++||||++. ..+.+.+...|+ +.+.+... .+...|..... ......+...+...+..
T Consensus 215 IlmSATld~--~~fa~~F~~apv-I~V~Gr~~------------PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-- 277 (1283)
T TIGR01967 215 IITSATIDP--ERFSRHFNNAPI-IEVSGRTY------------PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-- 277 (1283)
T ss_pred EEEeCCcCH--HHHHHHhcCCCE-EEECCCcc------------cceeEEecccccccchhhhHHHHHHHHHHHHHhh--
Confidence 999999974 456665544453 43332210 12222322211 12334444444433221
Q ss_pred cCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEE
Q psy15524 654 EDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV 733 (930)
Q Consensus 654 ~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI 733 (930)
..+.+|||+++.++++.+++.|.+....++.+..+||+|++++|..+++.+ +..+|||||+++++|||+|+|++||
T Consensus 278 --~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 --GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred --CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEE
Confidence 257999999999999999999987644467789999999999999997765 3468999999999999999999999
Q ss_pred EecCC------------------CChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 734 QYTAP------------------SSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 734 ~~~~p------------------~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
+++.+ .|..+|.||.|||||.| +|.|+.+++..+.
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 98843 36689999999999998 9999999987654
No 114
>KOG0334|consensus
Probab=99.97 E-value=4.5e-30 Score=293.48 Aligned_cols=255 Identities=32% Similarity=0.495 Sum_probs=219.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..|+|+|.+|||+|+.|+|+|.+|.||||||++|++|++.++..+++... ..|+-+||++||++|+.|+++.+..+
T Consensus 383 l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~-gdGPi~li~aPtrela~QI~r~~~kf 461 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEE-GDGPIALILAPTRELAMQIHREVRKF 461 (997)
T ss_pred hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhh-CCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998887665543 45999999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC--CCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
+...+ +.+.+.+|+.....+...+++++.|+||||++.++.+..+ ...+++++-++|+||||+|++.+|.|++.+|+
T Consensus 462 ~k~l~-ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii 540 (997)
T KOG0334|consen 462 LKLLG-IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRIL 540 (997)
T ss_pred HhhcC-ceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHH
Confidence 98754 8899999999999999999999999999999999887542 34446777799999999999999999887776
Q ss_pred HHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEeccc
Q psy15524 159 EILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~ 238 (930)
..++ +++|+++||||+
T Consensus 541 ~nlr----------------------------------------------------------------pdrQtvlfSatf 556 (997)
T KOG0334|consen 541 QNLR----------------------------------------------------------------PDRQTVLFSATF 556 (997)
T ss_pred hhcc----------------------------------------------------------------hhhhhhhhhhhh
Confidence 5552 345999999999
Q ss_pred chHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcC-cchhHHHHHHHHhhhccccccCCcceEEEEEe
Q psy15524 239 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP-PKLRLVALASFILGKCQNVNEDEESKMLVFMA 317 (930)
Q Consensus 239 ~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~ 317 (930)
+..+..++...+..|+.+.+.... .....+.+.+.+|. +..|...|..+|.. .....++||||.
T Consensus 557 pr~m~~la~~vl~~Pveiiv~~~s---------vV~k~V~q~v~V~~~e~eKf~kL~eLl~e------~~e~~~tiiFv~ 621 (997)
T KOG0334|consen 557 PRSMEALARKVLKKPVEIIVGGRS---------VVCKEVTQVVRVCAIENEKFLKLLELLGE------RYEDGKTIIFVD 621 (997)
T ss_pred hHHHHHHHHHhhcCCeeEEEccce---------eEeccceEEEEEecCchHHHHHHHHHHHH------HhhcCCEEEEEc
Confidence 999999999999999876655333 34567899999888 78899999999854 334789999999
Q ss_pred cccchhhhHHHHhhhhhhh
Q psy15524 318 TQDMADYHTELLSTKKKIK 336 (930)
Q Consensus 318 s~~~~~~l~~~L~~~~~~k 336 (930)
+...|+.+.+.|.+.|.-.
T Consensus 622 ~qe~~d~l~~~L~~ag~~~ 640 (997)
T KOG0334|consen 622 KQEKADALLRDLQKAGYNC 640 (997)
T ss_pred CchHHHHHHHHHHhcCcch
Confidence 9999999999998665433
No 115
>KOG0952|consensus
Probab=99.96 E-value=3.5e-29 Score=282.86 Aligned_cols=174 Identities=21% Similarity=0.283 Sum_probs=137.0
Q ss_pred CCCccCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-CCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~-~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
++|+.++.+|..++|.+. ++.|+|||||||||||.+|++.+++.+.....+ .-..++.+++|++|++|||.++++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 578899999999999876 678999999999999999999999999763222 122468999999999999999999888
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-C-CccCCCccEEEEcccccccccCcHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-E-TLKFSKVEHLVLDEADRILDQGYERDIAE 156 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~-~~~l~~l~~vViDE~h~~~~~~~~~~~~~ 156 (930)
+.+..++ +.+.-++|+....... -..++|||+|||.+--.-+.. + ..-+..+++|||||+|.+- +.+++.++.
T Consensus 186 kkl~~~g-i~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLh-d~RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLG-ISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLH-DDRGPVLET 260 (1230)
T ss_pred hhccccc-ceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhc-CcccchHHH
Confidence 8877666 7888888887654433 345899999999973322221 1 1225789999999999775 456777787
Q ss_pred HHHHHh----hcCCCceEEEEEeecCC
Q psy15524 157 FLEILK----KQKPQFQSILLSATLTP 179 (930)
Q Consensus 157 i~~~l~----~~~~~~~~i~lSAT~~~ 179 (930)
|+.+.. .....++++|||||+|+
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN 287 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN 287 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC
Confidence 776665 55677999999999998
No 116
>KOG0337|consensus
Probab=99.96 E-value=7.9e-30 Score=261.49 Aligned_cols=248 Identities=35% Similarity=0.518 Sum_probs=214.2
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||++|||+|++.||.+++|+|++..+-||||||.||++|+++++.... ..|.++++++||++|+.|..+..+.++
T Consensus 40 g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~RalilsptreLa~qtlkvvkdlg 114 (529)
T KOG0337|consen 40 GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRALILSPTRELALQTLKVVKDLG 114 (529)
T ss_pred hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccceeeccCcHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999999987632 347889999999999999999999998
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
...+ ...++++||....++...+..++|||++||+++...... -.+.++.+.|||+||+|.+++.||.+++..++.++
T Consensus 115 rgt~-lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl 192 (529)
T KOG0337|consen 115 RGTK-LRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRL 192 (529)
T ss_pred cccc-hhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhC
Confidence 7655 788889999999999999999999999999999776544 33678999999999999999999999988888777
Q ss_pred hhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchH
Q psy15524 162 KKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~ 241 (930)
+... |+++||||+|..
T Consensus 193 ~~~~----------------------------------------------------------------QTllfSatlp~~ 208 (529)
T KOG0337|consen 193 PESR----------------------------------------------------------------QTLLFSATLPRD 208 (529)
T ss_pred CCcc----------------------------------------------------------------eEEEEeccCchh
Confidence 5432 899999999988
Q ss_pred HHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccc
Q psy15524 242 VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDM 321 (930)
Q Consensus 242 ~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~ 321 (930)
...+++.-+.+|+.++.+... .+.+.+...+..+.+.+|..+|..++.+. ....+++|||.|...
T Consensus 209 lv~fakaGl~~p~lVRldvet---------kise~lk~~f~~~~~a~K~aaLl~il~~~------~~~~~t~vf~~tk~h 273 (529)
T KOG0337|consen 209 LVDFAKAGLVPPVLVRLDVET---------KISELLKVRFFRVRKAEKEAALLSILGGR------IKDKQTIVFVATKHH 273 (529)
T ss_pred hHHHHHccCCCCceEEeehhh---------hcchhhhhheeeeccHHHHHHHHHHHhcc------ccccceeEEecccch
Confidence 888889889999888765544 23466777788888899999999999542 235689999999999
Q ss_pred hhhhHHHHhhhhhh
Q psy15524 322 ADYHTELLSTKKKI 335 (930)
Q Consensus 322 ~~~l~~~L~~~~~~ 335 (930)
+|.+...|+..|-.
T Consensus 274 ve~~~~ll~~~g~~ 287 (529)
T KOG0337|consen 274 VEYVRGLLRDFGGE 287 (529)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999877643
No 117
>KOG0341|consensus
Probab=99.96 E-value=9.1e-31 Score=264.62 Aligned_cols=251 Identities=29% Similarity=0.466 Sum_probs=210.3
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCC--cCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP--KISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~--~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
|+.+|||+|.+-+|.+++|+|++..|-||||||++|.+|++-....... +.....|+..||+||+||||.|.++.+..
T Consensus 189 GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~ 268 (610)
T KOG0341|consen 189 GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQ 268 (610)
T ss_pred CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999876655432 33445689999999999999999999988
Q ss_pred Hhhh-----cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH
Q psy15524 80 LCKS-----FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 80 ~~~~-----~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
++.. ++.++...+.||.....+...++.+.+|+|+||++|.+++.. ..+.++-++|+++||||+|+|.||+.++
T Consensus 269 ~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddi 347 (610)
T KOG0341|consen 269 YVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDI 347 (610)
T ss_pred HHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhH
Confidence 8754 345677889999999999999999999999999999999976 7778888999999999999999988888
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEE
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 234 (930)
+.++..++.. +|+++|
T Consensus 348 r~iF~~FK~Q----------------------------------------------------------------RQTLLF 363 (610)
T KOG0341|consen 348 RTIFSFFKGQ----------------------------------------------------------------RQTLLF 363 (610)
T ss_pred HHHHHHHhhh----------------------------------------------------------------hheeee
Confidence 8777766433 399999
Q ss_pred ecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEE
Q psy15524 235 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 314 (930)
Q Consensus 235 sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iV 314 (930)
|||+|..++.++++.+-.|+.+-+....+ ..-++.|.+.++-.+.|+..|++-| .....|+||
T Consensus 364 SATMP~KIQ~FAkSALVKPvtvNVGRAGA---------AsldViQevEyVkqEaKiVylLeCL--------QKT~PpVLI 426 (610)
T KOG0341|consen 364 SATMPKKIQNFAKSALVKPVTVNVGRAGA---------ASLDVIQEVEYVKQEAKIVYLLECL--------QKTSPPVLI 426 (610)
T ss_pred eccccHHHHHHHHhhcccceEEecccccc---------cchhHHHHHHHHHhhhhhhhHHHHh--------ccCCCceEE
Confidence 99999999999999999999886655432 1223445555555677888887777 234569999
Q ss_pred EEecccchhhhHHHHhhhhh
Q psy15524 315 FMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 315 F~~s~~~~~~l~~~L~~~~~ 334 (930)
||..+.+++.++++|--+|.
T Consensus 427 FaEkK~DVD~IhEYLLlKGV 446 (610)
T KOG0341|consen 427 FAEKKADVDDIHEYLLLKGV 446 (610)
T ss_pred EeccccChHHHHHHHHHccc
Confidence 99999999999999976664
No 118
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.9e-27 Score=263.20 Aligned_cols=326 Identities=21% Similarity=0.283 Sum_probs=243.9
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEE
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 471 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~li 471 (930)
....+.+.+.+.+.| ++|..|++++..|... -+-++++.-|||||++++++++..+.. |.++..
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q~AL 316 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQAAL 316 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCeeEE
Confidence 334456666666787 7999999999999864 246899999999999999999988754 889999
Q ss_pred EccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch---HHHHHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 472 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 472 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
++||.-||.|.++.+.+++..++ +.+.+++|.... +.....+..| .+|+|+|..-+- ....++++.++|
T Consensus 317 MAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ------d~V~F~~LgLVI 389 (677)
T COG1200 317 MAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ------DKVEFHNLGLVI 389 (677)
T ss_pred eccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh------cceeecceeEEE
Confidence 99999999999999999999877 567888886544 3344455555 999999954332 456689999999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHhhcCc-cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 548 LDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~~~~~-~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
+||=||+.-.. ...|..... .+.++.||||+-+..-.+.-..--+ ++..+ .+|..-.
T Consensus 390 iDEQHRFGV~Q--------R~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDld---vS~Id-----------ElP~GRk 447 (677)
T COG1200 390 IDEQHRFGVHQ--------RLALREKGEQNPHVLVMTATPIPRTLALTAFGDLD---VSIID-----------ELPPGRK 447 (677)
T ss_pred EeccccccHHH--------HHHHHHhCCCCCcEEEEeCCCchHHHHHHHhcccc---chhhc-----------cCCCCCC
Confidence 99999975332 122233333 4678999999977544433221111 11111 1222222
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhH--------HHHHHHHhhhcCCCceEEEecCCCCHHH
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA--------DYHTELLSTVLGENIAFFKLHGSMSQSE 698 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~--------~~~~~~l~~~~~~~~~~~~lhg~~~~~~ 698 (930)
..-..+-+..+...+..++...+.. +.++.+.|+-.++. ...++.|+..++ +..+..+||+|+..+
T Consensus 448 pI~T~~i~~~~~~~v~e~i~~ei~~-----GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~-~~~vgL~HGrm~~~e 521 (677)
T COG1200 448 PITTVVIPHERRPEVYERIREEIAK-----GRQAYVVCPLIEESEKLELQAAEELYEELKSFLP-ELKVGLVHGRMKPAE 521 (677)
T ss_pred ceEEEEeccccHHHHHHHHHHHHHc-----CCEEEEEeccccccccchhhhHHHHHHHHHHHcc-cceeEEEecCCChHH
Confidence 2222222335556666677665543 78999999987655 455677775544 677888999999999
Q ss_pred HHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 699 RTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 699 R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
+.+++++|++|+.+|||||.|.+.|||+|+.++.|..+.-. -.++.=|-.||.||.+..+.|++++.+..
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999999999999999999999888654 67888899999999999999999999876
No 119
>PTZ00424 helicase 45; Provisional
Probab=99.96 E-value=4.1e-28 Score=275.20 Aligned_cols=244 Identities=25% Similarity=0.461 Sum_probs=183.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|.+||+.+++|+|++++||||||||++|++|+++.+.. ...+.++|||+|+++|+.|+.+.+..+
T Consensus 46 ~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 119 (401)
T PTZ00424 46 YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------DLNACQALILAPTRELAQQIQKVVLAL 119 (401)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC------CCCCceEEEECCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988753 123567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.... ..+..+.|+.....+...+..+++|+|+||+++.+.+.+ ....++++++|||||+|++++++|+..+..++..
T Consensus 120 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~ 197 (401)
T PTZ00424 120 GDYLK-VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKK 197 (401)
T ss_pred hhhcC-ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHHhcchHHHHHHHHhh
Confidence 76544 556667788777777777778899999999999998875 5567899999999999999999988776666544
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+ .+++|++++|||+++
T Consensus 198 ~---~~~~~~i~~SAT~~~------------------------------------------------------------- 213 (401)
T PTZ00424 198 L---PPDVQVALFSATMPN------------------------------------------------------------- 213 (401)
T ss_pred C---CCCcEEEEEEecCCH-------------------------------------------------------------
Confidence 3 445677777777653
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
....+...++.++..+...... .....+.+++..++. ..+...+..++ ......++||||+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~ivF~~t~ 277 (401)
T PTZ00424 214 EILELTTKFMRDPKRILVKKDE---------LTLEGIRQFYVAVEKEEWKFDTLCDLY-------ETLTITQAIIYCNTR 277 (401)
T ss_pred HHHHHHHHHcCCCEEEEeCCCC---------cccCCceEEEEecChHHHHHHHHHHHH-------HhcCCCeEEEEecCc
Confidence 2222222333333333222111 113446666666554 34566666665 233456899999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.++.++..|+..
T Consensus 278 ~~~~~l~~~l~~~ 290 (401)
T PTZ00424 278 RKVDYLTKKMHER 290 (401)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999998653
No 120
>KOG0347|consensus
Probab=99.96 E-value=5.1e-30 Score=270.71 Aligned_cols=274 Identities=30% Similarity=0.407 Sum_probs=198.9
Q ss_pred CCCccCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-------CCCCCCeEEEEEcccHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-------ISRKDGIYAVIILPTRELALQ 72 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-------~~~~~~~~~lvl~P~~~L~~q 72 (930)
+||..||++|..++|++..| .|++..|.||||||++|-+|++..+...... ......+.+||++||||||.|
T Consensus 199 ~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~Q 278 (731)
T KOG0347|consen 199 LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQ 278 (731)
T ss_pred cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHH
Confidence 69999999999999999999 7999999999999999999999966543221 111223359999999999999
Q ss_pred HHHHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC--ccCCCccEEEEcccccccccCc
Q psy15524 73 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET--LKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~--~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+.+..++... .+.+..+.||-....+.+.+...++|+|+||+||+.++...+. -.+++++++|+||+|+|++.|+
T Consensus 279 V~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh 357 (731)
T KOG0347|consen 279 VKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH 357 (731)
T ss_pred HHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc
Confidence 999999998754 4888899999999999999999999999999999999876543 3478999999999999999999
Q ss_pred HHHHHHHHHHHhh--cCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcC
Q psy15524 151 ERDIAEFLEILKK--QKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 228 (930)
Q Consensus 151 ~~~~~~i~~~l~~--~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (930)
...+..|+..|.. .++..|.+-||||+.-..+-... +.. .....
T Consensus 358 F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~-------------------~~~---------------k~~~k 403 (731)
T KOG0347|consen 358 FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLS-------------------SSR---------------KKKDK 403 (731)
T ss_pred HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhH-------------------Hhh---------------hccch
Confidence 9999999999973 34567999999999632110000 000 00000
Q ss_pred ceEEEEecccchHHHHhhhc--cccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhcccccc
Q psy15524 229 FQSVLLSATLTPAVQRLAGM--TLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNE 306 (930)
Q Consensus 229 ~q~~~~sat~~~~~~~l~~~--~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 306 (930)
+ .+.+..++.+... +..+|..|+.....+ ....+..-.+.|+..+|-..|.-+| .
T Consensus 404 ~------~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~---------ta~~l~Es~I~C~~~eKD~ylyYfl--------~ 460 (731)
T KOG0347|consen 404 E------DELNAKIQHLMKKIGFRGKPKIIDLTPQSA---------TASTLTESLIECPPLEKDLYLYYFL--------T 460 (731)
T ss_pred h------hhhhHHHHHHHHHhCccCCCeeEecCcchh---------HHHHHHHHhhcCCccccceeEEEEE--------e
Confidence 0 1222233333332 223445555444331 2233444444555555555554445 4
Q ss_pred CCcceEEEEEecccchhhhHHHHhhh
Q psy15524 307 DEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 307 ~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
+.++++|||||+.+.+.+++.+|+..
T Consensus 461 ryPGrTlVF~NsId~vKRLt~~L~~L 486 (731)
T KOG0347|consen 461 RYPGRTLVFCNSIDCVKRLTVLLNNL 486 (731)
T ss_pred ecCCceEEEechHHHHHHHHHHHhhc
Confidence 56789999999999999999998753
No 121
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=2.7e-27 Score=280.46 Aligned_cols=328 Identities=20% Similarity=0.190 Sum_probs=208.6
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
++...|+|+|+.+......+.-+++.||||+|||.+++..+...+.. ....+++|..||++++.|+++++.++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHH
Confidence 44558999999886554445668999999999999987776654432 33568999999999999999998875
Q ss_pred hccC-CCcceEEEeCCCchHHHH---------------------HHHh---c---CCcEEEECchhHHHhhhccCCcccc
Q psy15524 490 CKSF-TWIVPSWLTGGEKMKSEK---------------------ARIR---K---GISILVATPGRLLDHCKHTETLKFS 541 (930)
Q Consensus 490 ~~~~-~~~~~~~~~gg~~~~~~~---------------------~~~~---~---~~~Ilv~Tp~rl~~~l~~~~~~~~~ 541 (930)
.... ......++.|........ ..+. + -.+|+|||+..++......+...++
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 4322 222344444443211100 1111 1 1689999999987544433323333
Q ss_pred cc----eEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHH-HHhhhcCC-CE-------EEEccC
Q psy15524 542 KV----EHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQR-LAGMTLQN-PI-------QIDAAD 608 (930)
Q Consensus 542 ~l----~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~-l~~~~~~~-~~-------~i~~~~ 608 (930)
.+ ++|||||+|.+ +......+..+++.+... ..++++||||+|....+ +...+-.. +. .+....
T Consensus 435 ~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~--g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~ 511 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA--GGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRG 511 (878)
T ss_pred HHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc--CCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccc
Confidence 33 38999999987 444456667777776543 56799999999987654 33332111 10 000000
Q ss_pred CCCcccCccceecCC--CceEEEEE--c--CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC
Q psy15524 609 STDIHNTTDSLVIPD--SLKQHFIV--T--PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682 (930)
Q Consensus 609 ~~~~~~~~~~~~~~~--~~~~~~~~--~--~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~ 682 (930)
.... .......-+. .....+.+ . ........+...+..... .+++++|||||++.++.+++.|++..+
T Consensus 512 ~~~~-~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-----~g~~vLVf~NTV~~Aq~ly~~L~~~~~ 585 (878)
T PRK09694 512 VNGA-QRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN-----AGAQVCLICNLVDDAQKLYQRLKELNN 585 (878)
T ss_pred cccc-eeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHHHHhhCC
Confidence 0000 0000000000 01111111 1 110111222333322211 267999999999999999999987644
Q ss_pred CCceEEEecCCCCHHHHH----HHHHHh-hcCC---CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 683 ENIAFFKLHGSMSQSERT----EVFKTF-RSVK---SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 683 ~~~~~~~lhg~~~~~~R~----~v~~~F-~~~~---~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
....+..+||++++.+|. ++++.| ++|+ ..|||||+++++|+|+ +++++|....| .+.++||+||++|.
T Consensus 586 ~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~ 662 (878)
T PRK09694 586 TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRH 662 (878)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCC
Confidence 446788999999999994 567788 5665 3699999999999999 58999998888 68999999999998
Q ss_pred CC
Q psy15524 755 GH 756 (930)
Q Consensus 755 g~ 756 (930)
+.
T Consensus 663 ~~ 664 (878)
T PRK09694 663 HR 664 (878)
T ss_pred CC
Confidence 76
No 122
>KOG0350|consensus
Probab=99.96 E-value=4.1e-29 Score=261.53 Aligned_cols=279 Identities=32% Similarity=0.508 Sum_probs=213.0
Q ss_pred CCCccCcHHHHHHHHHhhc---------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILD---------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 71 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~---------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 71 (930)
|++..+-|+|..++|.++. ++|++|.||||||||++|.+|+++.+.... .+..++|||+||++|+.
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-----v~~LRavVivPtr~L~~ 229 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-----VKRLRAVVIVPTRELAL 229 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-----ccceEEEEEeeHHHHHH
Confidence 5788999999999999852 579999999999999999999999997632 23477999999999999
Q ss_pred HHHHHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCC-C----cEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc
Q psy15524 72 QTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-I----SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 72 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~----~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~ 146 (930)
|+++.|.+++...+ +.+..+.|..+.......+.+. + ||+|+||+||.+++.+...+.+++++++||||||+|+
T Consensus 230 QV~~~f~~~~~~tg-L~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 230 QVYDTFKRLNSGTG-LAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL 308 (620)
T ss_pred HHHHHHHHhccCCc-eEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH
Confidence 99999999998766 5577788888777766666543 3 8999999999999998899999999999999999999
Q ss_pred ccCcHHHHHHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccch---hhHHHHHHHHh
Q psy15524 147 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYE---RDIAEFLEILK 223 (930)
Q Consensus 147 ~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~---~~~~~~~~~~~ 223 (930)
+..|...+..+...+...... . --+.++.+.+. --+.+++..+.
T Consensus 309 ~qsfQ~Wl~~v~~~~~~~k~~----~-----------------------------~~~nii~~~~~~~pt~~~e~~t~~~ 355 (620)
T KOG0350|consen 309 DQSFQEWLDTVMSLCKTMKRV----A-----------------------------CLDNIIRQRQAPQPTVLSELLTKLG 355 (620)
T ss_pred HHHHHHHHHHHHHHhCCchhh----c-----------------------------ChhhhhhhcccCCchhhHHHHhhcC
Confidence 998887777666655433100 0 00011111110 00112222222
Q ss_pred hcCcCceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccc
Q psy15524 224 KQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303 (930)
Q Consensus 224 ~~~~~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~ 303 (930)
...+..+.++||+|+.+...++.+.-+..|..+-+... -...+.+|+.+.+.+..++...|...+..++
T Consensus 356 ~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~-----~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI------ 424 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP-----LIGRYSLPSSLSHRLVVTEPKFKPLAVYALI------ 424 (620)
T ss_pred CcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc-----cceeeecChhhhhceeecccccchHhHHHHH------
Confidence 22334578999999999998888877777744332211 1234568899999999999889999999999
Q ss_pred cccCCcceEEEEEecccchhhhHHHHh
Q psy15524 304 VNEDEESKMLVFMATQDMADYHTELLS 330 (930)
Q Consensus 304 ~~~~~~~~~iVF~~s~~~~~~l~~~L~ 330 (930)
......++|+|+++.+.+.+++..|+
T Consensus 425 -~~~k~~r~lcf~~S~~sa~Rl~~~L~ 450 (620)
T KOG0350|consen 425 -TSNKLNRTLCFVNSVSSANRLAHVLK 450 (620)
T ss_pred -HHhhcceEEEEecchHHHHHHHHHHH
Confidence 45677899999999999999999997
No 123
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.6e-27 Score=271.43 Aligned_cols=305 Identities=18% Similarity=0.209 Sum_probs=199.4
Q ss_pred EEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH---
Q psy15524 433 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS--- 509 (930)
Q Consensus 433 lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~--- 509 (930)
++.|+||||||.+|+..+...+. .|.++||++|+++|+.|+++.+++.+.. .+..+.++.....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f~~----~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---------LGKSVLVLVPEIALTPQMIQRFKYRFGS----QVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHhCC----cEEEEECCCCHHHHHH
Confidence 46899999999999766655543 2678999999999999999999886531 2445566654332
Q ss_pred HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCc------HHHHHHHHHHHhhcCccceEEEE
Q psy15524 510 EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY------ERDIAEFLEILKKQKPQFQSILL 582 (930)
Q Consensus 510 ~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~------~~~l~~i~~~l~~~~~~~q~vl~ 582 (930)
.+..+.. ..+|+|+|+..+. ..+.++++|||||+|.....+- ...+..+.... .+.+++++
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~----~~~~vil~ 135 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK----FNCPVVLG 135 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh----cCCCEEEE
Confidence 2333333 4799999998663 2467899999999998764431 12333333332 37899999
Q ss_pred ccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchh----hHHHHHHHHHhhccCCCcCCCc
Q psy15524 583 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL----RLVALASFILGKCQNVNEDEES 658 (930)
Q Consensus 583 SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~ 658 (930)
|||++.+....+.. .....+....... .. ..| ...++...... -...+...+.+.... ++
T Consensus 136 SATPsles~~~~~~--g~~~~~~l~~r~~-~~-----~~p---~v~vid~~~~~~~~~ls~~l~~~i~~~l~~-----g~ 199 (505)
T TIGR00595 136 SATPSLESYHNAKQ--KAYRLLVLTRRVS-GR-----KPP---EVKLIDMRKEPRQSFLSPELITAIEQTLAA-----GE 199 (505)
T ss_pred eCCCCHHHHHHHhc--CCeEEeechhhhc-CC-----CCC---eEEEEecccccccCCccHHHHHHHHHHHHc-----CC
Confidence 99987554443322 1111111111000 00 000 00111111110 112334444433322 56
Q ss_pred eEEEEecchhh------------------------------------------------------------HHHHHHHHh
Q psy15524 659 KMLVFMATQDM------------------------------------------------------------ADYHTELLS 678 (930)
Q Consensus 659 k~iVF~~s~~~------------------------------------------------------------~~~~~~~l~ 678 (930)
++|||++++.. ++.+.+.|.
T Consensus 200 qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~ 279 (505)
T TIGR00595 200 QSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELA 279 (505)
T ss_pred cEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHH
Confidence 88888554321 366677777
Q ss_pred hhcCCCceEEEecCCCCHHHH--HHHHHHhhcCCCcEEEeccccccccCCCCccEEE--EecC----CC------ChhhH
Q psy15524 679 TVLGENIAFFKLHGSMSQSER--TEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV--QYTA----PS------SSTDY 744 (930)
Q Consensus 679 ~~~~~~~~~~~lhg~~~~~~R--~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI--~~~~----p~------s~~~y 744 (930)
+.++ +..+..+|+++++..+ +.+++.|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|
T Consensus 280 ~~fp-~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll 358 (505)
T TIGR00595 280 KLFP-GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLL 358 (505)
T ss_pred hhCC-CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHH
Confidence 7664 6788999999987766 8999999999999999999999999999999886 4443 21 24678
Q ss_pred HhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 745 VHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 745 ~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
+|++||+||.++.|.+++.....+...++.+...+
T Consensus 359 ~q~~GRagR~~~~g~viiqt~~p~~~~~~~~~~~d 393 (505)
T TIGR00595 359 TQVAGRAGRAEDPGQVIIQTYNPNHPAIQAALTGD 393 (505)
T ss_pred HHHHhccCCCCCCCEEEEEeCCCCCHHHHHHHhCC
Confidence 99999999999999998777665555666665543
No 124
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=4.1e-27 Score=240.41 Aligned_cols=202 Identities=44% Similarity=0.676 Sum_probs=176.1
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEE
Q psy15524 392 YEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 471 (930)
Q Consensus 392 f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~li 471 (930)
|+++ ++++.+.+.+.+ +|+..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... ...+++++|
T Consensus 1 ~~~~-~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~vii 74 (203)
T cd00268 1 FEEL-GLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALI 74 (203)
T ss_pred CCcC-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEE
Confidence 6778 899999999986 8999999999999999999999999999999999999999999987632 135788999
Q ss_pred EccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecc
Q psy15524 472 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551 (930)
Q Consensus 472 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEa 551 (930)
++||++|+.|+.+.+..+.... ...+..+.|+.........+..+++|+|+||+++.+++.+. ...+.+++++|+||+
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~ 152 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEA 152 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeCh
Confidence 9999999999999999887653 35566778887766666666668999999999999988764 467889999999999
Q ss_pred hhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEE
Q psy15524 552 DRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604 (930)
Q Consensus 552 h~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i 604 (930)
|.+.+.++...+..+++.++. .+|++++|||+++.+..+....+.+|+++
T Consensus 153 h~~~~~~~~~~~~~~~~~l~~---~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 153 DRMLDMGFEDQIREILKLLPK---DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHhhccChHHHHHHHHHhCCc---ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999888887754 88999999999999999999999888775
No 125
>KOG0947|consensus
Probab=99.95 E-value=8.9e-27 Score=260.23 Aligned_cols=333 Identities=22% Similarity=0.252 Sum_probs=235.2
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
++| .+-+.|++||-++..|..|+|.|+|.+|||+++..++...- ..+.+++|-+|-++|..|-++.|+..
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---------~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---------hhccceEecchhhhhccchHHHHHHh
Confidence 455 68899999999999999999999999999999887776433 24788999999999999999999988
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
+... ++++|+.... ..+.++|+|.+.|-+++.+... -.+++++||+||+|-+.|...+-.++.++-+
T Consensus 364 F~Dv-----gLlTGDvqin-------PeAsCLIMTTEILRsMLYrgad-liRDvE~VIFDEVHYiND~eRGvVWEEViIM 430 (1248)
T KOG0947|consen 364 FGDV-----GLLTGDVQIN-------PEASCLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYINDVERGVVWEEVIIM 430 (1248)
T ss_pred cccc-----ceeecceeeC-------CCcceEeehHHHHHHHHhcccc-hhhccceEEEeeeeecccccccccceeeeee
Confidence 7643 3678886544 3578999999999999887444 3688999999999999998888888888888
Q ss_pred HhhcCccceEEEEccccCHH--HHHHHhhhcCCCEEEEccCCCC-------------c-----------------ccCc-
Q psy15524 570 LKKQKPQFQSILLSATLTPA--VQRLAGMTLQNPIQIDAADSTD-------------I-----------------HNTT- 616 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~-------------~-----------------~~~~- 616 (930)
+|+ ..++|++|||+|+. ..+|.+..-+..+++....... . ....
T Consensus 431 lP~---HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 431 LPR---HVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ccc---cceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 876 89999999999985 4456555544433322110000 0 0000
Q ss_pred --cceec-------------CCCceEEEEE------cCchhh-----HHHHHHHHHhhccCCCcCCCceEEEEecchhhH
Q psy15524 617 --DSLVI-------------PDSLKQHFIV------TPPKLR-----LVALASFILGKCQNVNEDEESKMLVFMATQDMA 670 (930)
Q Consensus 617 --~~~~~-------------~~~~~~~~~~------~~~~~~-----~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~ 670 (930)
..++. ...-++.+.. .+.+.+ ...++..+... .--|+||||-+++.|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-------~lLP~VvFvFSkkrC 580 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-------NLLPVVVFVFSKKRC 580 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-------ccCceEEEEEccccH
Confidence 00000 0000000000 000111 22222222211 145899999999999
Q ss_pred HHHHHHHhhh--------------------------------------cCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 671 DYHTELLSTV--------------------------------------LGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 671 ~~~~~~l~~~--------------------------------------~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
+..++.|..+ +.+|+.++ ||++-+--++-|+-.|..|-++
T Consensus 581 de~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVH--H~GlLPivKE~VE~LFqrGlVK 658 (1248)
T KOG0947|consen 581 DEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVH--HGGLLPIVKEVVELLFQRGLVK 658 (1248)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhh--cccchHHHHHHHHHHHhcCceE
Confidence 9888777543 11255555 9999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEec--------CCCChhhHHhhhcccccCCCC--ceEEEEeCcc--cHHHHHHHHh
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYT--------APSSSTDYVHRVGRTARVGHE--GSSLLFLIPS--EVKLVEELQN 777 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~--------~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~--e~~~~~~l~~ 777 (930)
||+||.++|+|+|.|+-++|+..- .-..+.+|.||+|||||.|-+ |..+++.... +..-++.+.-
T Consensus 659 VLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~ 735 (1248)
T KOG0947|consen 659 VLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIM 735 (1248)
T ss_pred EEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhc
Confidence 999999999999999988777422 223678999999999999975 5555554432 3344555543
No 126
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.95 E-value=5.3e-27 Score=279.21 Aligned_cols=168 Identities=22% Similarity=0.291 Sum_probs=135.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.||++|++||+.+++|+|+++++|||||||+||++|+++.+.. +++.++|||+||+||++|+.+.++++
T Consensus 32 ~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-------~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 32 AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD-------DPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-------CCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999865 23568999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCC---CccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE---TLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~---~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
. ...+.+..+.|+.. ..+...+..+++|+|+||+++...+.... ...++++++|||||+|.|.+ .|+..+..+
T Consensus 105 ~--~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~i 180 (742)
T TIGR03817 105 T--LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALV 180 (742)
T ss_pred c--cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHH
Confidence 6 23366666666655 45556677789999999999975432211 12278999999999999976 488888887
Q ss_pred HHHHhh----cCCCceEEEEEeecCC
Q psy15524 158 LEILKK----QKPQFQSILLSATLTP 179 (930)
Q Consensus 158 ~~~l~~----~~~~~~~i~lSAT~~~ 179 (930)
+++++. .+.++|++++|||+++
T Consensus 181 l~rL~ri~~~~g~~~q~i~~SATi~n 206 (742)
T TIGR03817 181 LRRLRRLCARYGASPVFVLASATTAD 206 (742)
T ss_pred HHHHHHHHHhcCCCCEEEEEecCCCC
Confidence 777653 2345677777777765
No 127
>KOG4284|consensus
Probab=99.95 E-value=4.1e-28 Score=260.16 Aligned_cols=245 Identities=27% Similarity=0.394 Sum_probs=208.8
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||..||++|..|||.++.+.|+||+|..|+|||++|...+++.+.. +...++++|++||||++.|+.+.+.+++
T Consensus 44 ~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~~q~~Iv~PTREiaVQI~~tv~~v~ 117 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSHIQKVIVTPTREIAVQIKETVRKVA 117 (980)
T ss_pred cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCcceeEEEecchhhhhHHHHHHHHhc
Confidence 7889999999999999999999999999999999999999888754 3456789999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEI 160 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~~~ 160 (930)
..+....++++.||.........+.. ++|+||||+|+..+... +.++.++++++|+||||.+.+. .|..++..|+..
T Consensus 118 ~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 118 PSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS 195 (980)
T ss_pred ccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHh-cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh
Confidence 98888999999999988777666644 78999999999998875 8888999999999999999884 588888888877
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++..+ |.+.||||.|.
T Consensus 196 lP~~r----------------------------------------------------------------Qv~a~SATYp~ 211 (980)
T KOG4284|consen 196 LPQIR----------------------------------------------------------------QVAAFSATYPR 211 (980)
T ss_pred cchhh----------------------------------------------------------------eeeEEeccCch
Confidence 76544 88888888888
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcc--------hhHHHHHHHHhhhccccccCCcceE
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK--------LRLVALASFILGKCQNVNEDEESKM 312 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~k~~~l~~~l~~~~~~~~~~~~~~~ 312 (930)
....+...+|++|..++.+... ...-.|+|+|...+.. .|+..|-+++ ..-+..++
T Consensus 212 nLdn~Lsk~mrdp~lVr~n~~d---------~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf-------~~ipy~QA 275 (980)
T KOG4284|consen 212 NLDNLLSKFMRDPALVRFNADD---------VQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVF-------KSIPYVQA 275 (980)
T ss_pred hHHHHHHHHhcccceeecccCC---------ceeechhheeeeccCCcchHHHHHHHHHHHHHHH-------hhCchHHH
Confidence 8888888999999988776654 2234588888776542 3666666666 34566789
Q ss_pred EEEEecccchhhhHHHHhhhhh
Q psy15524 313 LVFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 313 iVF~~s~~~~~~l~~~L~~~~~ 334 (930)
||||+....|+-++..|+..|.
T Consensus 276 lVF~~~~sra~~~a~~L~ssG~ 297 (980)
T KOG4284|consen 276 LVFCDQISRAEPIATHLKSSGL 297 (980)
T ss_pred HhhhhhhhhhhHHHHHhhccCC
Confidence 9999999999999999998764
No 128
>KOG0329|consensus
Probab=99.95 E-value=3.8e-28 Score=232.72 Aligned_cols=234 Identities=25% Similarity=0.421 Sum_probs=199.1
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||++|+..|.+|||.+.-|.|++.+|.+|.|||.+|.++.++.+.. .++...+|+++.|||||-|+.+++.+++
T Consensus 61 gfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v~g~vsvlvmchtrelafqi~~ey~rfs 134 (387)
T KOG0329|consen 61 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------VDGQVSVLVMCHTRELAFQISKEYERFS 134 (387)
T ss_pred cCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------CCCeEEEEEEeccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998864 2345669999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEI 160 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~ 160 (930)
.+++.+++++.+||...+...+.+.+.|+|+||||++++.+.++ +.+.+++++.+|+||||.|+++- .+.+
T Consensus 135 kymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdkmle~lDMrRD------- 206 (387)
T KOG0329|consen 135 KYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQLDMRRD------- 206 (387)
T ss_pred hhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHHHHHHHHHHHH-------
Confidence 99999999999999999999999999999999999999988876 78899999999999999987642 2233
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+.++.+..+..+ |+++||||++.
T Consensus 207 ------------------------------------------------------vQEifr~tp~~K---Qvmmfsatlsk 229 (387)
T KOG0329|consen 207 ------------------------------------------------------VQEIFRMTPHEK---QVMMFSATLSK 229 (387)
T ss_pred ------------------------------------------------------HHHHhhcCcccc---eeeeeeeecch
Confidence 333333333333 99999999999
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+...++.++++|..+.+.+... ...-.+.|+|+...+..|...+..+|. .-...+++||+.+..
T Consensus 230 eiRpvC~kFmQdPmEi~vDdE~K--------LtLHGLqQ~YvkLke~eKNrkl~dLLd-------~LeFNQVvIFvKsv~ 294 (387)
T KOG0329|consen 230 EIRPVCHKFMQDPMEIFVDDEAK--------LTLHGLQQYYVKLKENEKNRKLNDLLD-------VLEFNQVVIFVKSVQ 294 (387)
T ss_pred hhHHHHHhhhcCchhhhccchhh--------hhhhhHHHHHHhhhhhhhhhhhhhhhh-------hhhhcceeEeeehhh
Confidence 99999999999999998877653 223458888888888888888888883 345678999999876
Q ss_pred c
Q psy15524 321 M 321 (930)
Q Consensus 321 ~ 321 (930)
.
T Consensus 295 R 295 (387)
T KOG0329|consen 295 R 295 (387)
T ss_pred h
Confidence 6
No 129
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=9.8e-27 Score=268.57 Aligned_cols=176 Identities=28% Similarity=0.350 Sum_probs=154.8
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
|.+|||.|.+|||.+.+|+|+|++||||||||+++++|+++.+.... .....++.++||++|.+||.+++.++++.++.
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~ 98 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKALNNDIRRRLEEPLR 98 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999998863 22234689999999999999999999999999
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC-ccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-LKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
.++ +.+..-+|+....+......+.|||+|+|||.|.-++..... -.+.++++|||||+|.+.+..++.++..-+++|
T Consensus 99 ~~G-~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL 177 (814)
T COG1201 99 ELG-IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERL 177 (814)
T ss_pred HcC-CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHH
Confidence 877 666777888877777777788899999999999887765322 228999999999999999999999999999999
Q ss_pred hhcCCCceEEEEEeecCCC
Q psy15524 162 KKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~ 180 (930)
....+++|.||||||.++.
T Consensus 178 ~~l~~~~qRIGLSATV~~~ 196 (814)
T COG1201 178 RELAGDFQRIGLSATVGPP 196 (814)
T ss_pred HhhCcccEEEeehhccCCH
Confidence 9877799999999999863
No 130
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=1.6e-25 Score=267.05 Aligned_cols=345 Identities=20% Similarity=0.211 Sum_probs=214.4
Q ss_pred CCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.|.|+|..+...++.. ..+++...+|.|||+.+.+.+-+.+.. +...++|||||+ .|..||..++.+.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 6899999998777654 359999999999999876665554443 334679999997 899999999976653
Q ss_pred cCCCcceEEEeCCCchHHHH---HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-cHHHHHHHH
Q psy15524 492 SFTWIVPSWLTGGEKMKSEK---ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFL 567 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~---~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g-~~~~l~~i~ 567 (930)
- ... +.++....... .......+++|+|.+.+...-.....+.-..++++|+||||++-... -.......+
T Consensus 224 l----~~~-i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 224 L----RFS-LFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred C----CeE-EEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 1 112 22322211110 01112468999998876542111111223468999999999986211 111113333
Q ss_pred HHHhhcCccceEEEEccccCHH-HHH-HHhhhcCCCEEEE----------------------------------------
Q psy15524 568 EILKKQKPQFQSILLSATLTPA-VQR-LAGMTLQNPIQID---------------------------------------- 605 (930)
Q Consensus 568 ~~l~~~~~~~q~vl~SAT~~~~-~~~-l~~~~~~~~~~i~---------------------------------------- 605 (930)
..+... ...++++|||+-.. ..+ +....+-+|....
T Consensus 299 ~~La~~--~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 299 EQLAEV--IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHHhhc--cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 444321 34679999997420 000 0000000000000
Q ss_pred ----cc---------CCC-------------CcccC---------ccceecCCCceEEEEE-cC----------------
Q psy15524 606 ----AA---------DST-------------DIHNT---------TDSLVIPDSLKQHFIV-TP---------------- 633 (930)
Q Consensus 606 ----~~---------~~~-------------~~~~~---------~~~~~~~~~~~~~~~~-~~---------------- 633 (930)
.. ... +.+.. ......|....+.+.. .+
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~ 456 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARAR 456 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHH
Confidence 00 000 00000 0000011111111111 01
Q ss_pred --------------------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCC
Q psy15524 634 --------------------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGS 693 (930)
Q Consensus 634 --------------------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~ 693 (930)
.+.|...+..++... ...|+||||++++.+..+.+.|... .|+.+..+||+
T Consensus 457 ~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-------~~~KvLVF~~~~~t~~~L~~~L~~~--~Gi~~~~ihG~ 527 (956)
T PRK04914 457 DMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-------RSEKVLVICAKAATALQLEQALRER--EGIRAAVFHEG 527 (956)
T ss_pred hhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-------CCCeEEEEeCcHHHHHHHHHHHhhc--cCeeEEEEECC
Confidence 112333344444321 2679999999999999999999543 37889999999
Q ss_pred CCHHHHHHHHHHhhcC--CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH--
Q psy15524 694 MSQSERTEVFKTFRSV--KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV-- 769 (930)
Q Consensus 694 ~~~~~R~~v~~~F~~~--~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~-- 769 (930)
|++.+|..+++.|+++ ...|||||+++++|+|++.+++||+||+|.++..|+||+||++|.|+.|.+.+++...+.
T Consensus 528 ~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~ 607 (956)
T PRK04914 528 MSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTA 607 (956)
T ss_pred CCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCH
Confidence 9999999999999984 589999999999999999999999999999999999999999999999987776654332
Q ss_pred -HHHHHHHhcCCcc
Q psy15524 770 -KLVEELQNRRIRI 782 (930)
Q Consensus 770 -~~~~~l~~~~~~~ 782 (930)
..+..+...++.+
T Consensus 608 ~e~i~~~~~~~l~i 621 (956)
T PRK04914 608 QERLFRWYHEGLNA 621 (956)
T ss_pred HHHHHHHHhhhcCc
Confidence 3444444555543
No 131
>KOG0327|consensus
Probab=99.95 E-value=1.3e-27 Score=244.64 Aligned_cols=243 Identities=28% Similarity=0.454 Sum_probs=207.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.||+.|+.+|+.||..+..|.|+.+.+++|+|||.+|.+++++.+... ....++++++|+++|+.|+.+....+
T Consensus 44 yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------~ke~qalilaPtreLa~qi~~v~~~l 117 (397)
T KOG0327|consen 44 YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------VKETQALILAPTRELAQQIQKVVRAL 117 (397)
T ss_pred hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------hHHHHHHHhcchHHHHHHHHHHHHhh
Confidence 499999999999999999999999999999999999999999998542 23456999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHh-cCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+...+ ..+..+.||.....+...+ ...++|+++||+++.+++.. ..+..+.++++|+||+|.|+..||..++..++.
T Consensus 118 g~~~~-~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~ 195 (397)
T KOG0327|consen 118 GDHMD-VSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQ 195 (397)
T ss_pred hcccc-eeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEEeecchHhhhccchHHHHHHHHH
Confidence 87665 6666677777766554444 45699999999999999987 477788999999999999999999999998888
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++..- |.+++|||++
T Consensus 196 ~lp~~v----------------------------------------------------------------Qv~l~SAT~p 211 (397)
T KOG0327|consen 196 ELPSDV----------------------------------------------------------------QVVLLSATMP 211 (397)
T ss_pred HcCcch----------------------------------------------------------------hheeecccCc
Confidence 775432 8889999999
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+....+.++++|+.+...... .....+.|+|+.+.++.|+..|..+. . .-.+.+|||||+
T Consensus 212 ~~vl~vt~~f~~~pv~i~vkk~~---------ltl~gikq~~i~v~k~~k~~~l~dl~-------~--~~~q~~if~nt~ 273 (397)
T KOG0327|consen 212 SDVLEVTKKFMREPVRILVKKDE---------LTLEGIKQFYINVEKEEKLDTLCDLY-------R--RVTQAVIFCNTR 273 (397)
T ss_pred HHHHHHHHHhccCceEEEecchh---------hhhhheeeeeeeccccccccHHHHHH-------H--hhhcceEEecch
Confidence 99999999999999988776544 23577999999998888999998888 2 457899999999
Q ss_pred cchhhhHHHHhhhh
Q psy15524 320 DMADYHTELLSTKK 333 (930)
Q Consensus 320 ~~~~~l~~~L~~~~ 333 (930)
+.+..+...|..++
T Consensus 274 r~v~~l~~~L~~~~ 287 (397)
T KOG0327|consen 274 RKVDNLTDKLRAHG 287 (397)
T ss_pred hhHHHHHHHHhhCC
Confidence 99999999996544
No 132
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=2.7e-26 Score=258.47 Aligned_cols=297 Identities=22% Similarity=0.283 Sum_probs=199.1
Q ss_pred CCCCHHHHHhHHhhhc----CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~----~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..++++|++++..+.. ++..++++|||+|||++++..+... +..+|||+||++|+.||.+.+..
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------------cCCEEEEECcHHHHHHHHHHHHH
Confidence 4699999999999998 7889999999999999866555432 22299999999999999987777
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
.+... ...+.+.|+..... . ..|.|+|...+.... ....+..+++.+||+||||++....+.. +.+
T Consensus 103 ~~~~~--~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~~~ 168 (442)
T COG1061 103 FLLLN--DEIGIYGGGEKELE------P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRR----ILE 168 (442)
T ss_pred hcCCc--cccceecCceeccC------C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHH----HHH
Confidence 66432 12343444432111 1 469999988776531 1122334579999999999998665433 333
Q ss_pred HHhhcCccce-EEEEccccCHHH----HHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE--------------
Q psy15524 569 ILKKQKPQFQ-SILLSATLTPAV----QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF-------------- 629 (930)
Q Consensus 569 ~l~~~~~~~q-~vl~SAT~~~~~----~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 629 (930)
.+.. .. .+++|||++..- ..+.... .|........... ......|..+....
T Consensus 169 ~~~~----~~~~LGLTATp~R~D~~~~~~l~~~~--g~~vy~~~~~~li---~~g~Lap~~~~~i~~~~t~~~~~~~~~~ 239 (442)
T COG1061 169 LLSA----AYPRLGLTATPEREDGGRIGDLFDLI--GPIVYEVSLKELI---DEGYLAPYKYVEIKVTLTEDEEREYAKE 239 (442)
T ss_pred hhhc----ccceeeeccCceeecCCchhHHHHhc--CCeEeecCHHHHH---hCCCccceEEEEEEeccchHHHHHhhhh
Confidence 4432 22 899999976321 1111111 1222221111000 00000000000000
Q ss_pred ----------------------EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceE
Q psy15524 630 ----------------------IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687 (930)
Q Consensus 630 ----------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~ 687 (930)
.......+...+...+..+. .+.+++||+++.++++.++..+..- +. +
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lif~~~~~~a~~i~~~~~~~---~~-~ 309 (442)
T COG1061 240 SARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA------RGDKTLIFASDVEHAYEIAKLFLAP---GI-V 309 (442)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc------CCCcEEEEeccHHHHHHHHHHhcCC---Cc-e
Confidence 00111122222222222211 2679999999999999999988763 44 6
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 688 ~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
..+.|..++.+|..+++.|+.|...+||++.++.+|+|+|+++++|...+..|...|+||+||.-|.
T Consensus 310 ~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 310 EAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 6789999999999999999999999999999999999999999999999999999999999999993
No 133
>KOG0948|consensus
Probab=99.94 E-value=7.4e-27 Score=254.58 Aligned_cols=335 Identities=20% Similarity=0.243 Sum_probs=245.3
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.+-|.|..+|..+-++..|+|.|.|.+|||.++..+|...+.. ..+++|-+|-++|..|-|+++..-+++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 5789999999999999999999999999999999999888865 678999999999999999999887764
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
+++.+|+...+ ..+.-+|+|.+.|-.++.+.. --++.+.|+|+||+|-|-|...+-.++.-+-.+++
T Consensus 199 ----VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGS-EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~- 265 (1041)
T KOG0948|consen 199 ----VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGS-EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPD- 265 (1041)
T ss_pred ----cceeecceeeC-------CCCceeeeHHHHHHHHHhccc-hHhheeeeEEeeeehhccccccceeeeeeEEeccc-
Confidence 45667776543 356789999999999888743 44789999999999999887766666655555654
Q ss_pred CccceEEEEccccCHHHH--HHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhh-----HHHHHHHHH
Q psy15524 574 KPQFQSILLSATLTPAVQ--RLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR-----LVALASFIL 646 (930)
Q Consensus 574 ~~~~q~vl~SAT~~~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~ 646 (930)
+.+.+++|||+|++.+ +|....-+.|..+-..+. ...+.+.+..|..-...|.++..+.+ +....+.+.
T Consensus 266 --~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdy--RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~ 341 (1041)
T KOG0948|consen 266 --NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDY--RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLR 341 (1041)
T ss_pred --cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecC--CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhh
Confidence 8899999999998743 454444455655433222 12233445555555555666655422 222222332
Q ss_pred hhccCCC-------------------------------cCCCceEEEEecchhhHHHHHHHHhhh---------------
Q psy15524 647 GKCQNVN-------------------------------EDEESKMLVFMATQDMADYHTELLSTV--------------- 680 (930)
Q Consensus 647 ~~~~~~~-------------------------------~~~~~k~iVF~~s~~~~~~~~~~l~~~--------------- 680 (930)
....... .+...++|||+-+++.|+.++-.+.++
T Consensus 342 ~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF 421 (1041)
T KOG0948|consen 342 KAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIF 421 (1041)
T ss_pred ccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHH
Confidence 2111110 001248999999999999887655443
Q ss_pred -----------------------cCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE---
Q psy15524 681 -----------------------LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ--- 734 (930)
Q Consensus 681 -----------------------~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~--- 734 (930)
+.+|++++ |+|+-+--++-++-.|.+|-+++|+||.+++.|+|.|+-++|+-
T Consensus 422 ~nAi~~LseeDr~LPqie~iLPLL~RGIGIH--HsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~r 499 (1041)
T KOG0948|consen 422 NNAIDQLSEEDRELPQIENILPLLRRGIGIH--HSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVR 499 (1041)
T ss_pred HHHHHhcChhhccchHHHHHHHHHHhccccc--cccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeecc
Confidence 11266665 99999999999999999999999999999999999999887763
Q ss_pred -ec----CCCChhhHHhhhcccccCCCC--ceEEEEeCcc-cHHHHHHHHh
Q psy15524 735 -YT----APSSSTDYVHRVGRTARVGHE--GSSLLFLIPS-EVKLVEELQN 777 (930)
Q Consensus 735 -~~----~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~-e~~~~~~l~~ 777 (930)
|| -.-+..+|+||.|||||.|.+ |.+++++... +....+.+.+
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~k 550 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLK 550 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhc
Confidence 22 223678999999999999985 7777777643 3334455544
No 134
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=4.7e-26 Score=266.18 Aligned_cols=323 Identities=22% Similarity=0.266 Sum_probs=237.4
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.++| .+-++|++++-.+-.|..|+|+||||||||++...++...+.. |.+++|.+|.++|..|.++.+..
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHHH
Confidence 3566 6889999999999999999999999999999998888877754 66799999999999999999988
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
.+... ....++++|+...+ .++.++|+|.+-|-+++.+. ...+..+.+||+||+|.|.|...+...+.++-
T Consensus 185 ~fgdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii 255 (1041)
T COG4581 185 KFGDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVII 255 (1041)
T ss_pred Hhhhh-hhhccceecceeeC-------CCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHH
Confidence 87755 34567788886653 46889999999998888774 55689999999999999999998888898888
Q ss_pred HHhhcCccceEEEEccccCHH--HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE-------EcCchhhH-
Q psy15524 569 ILKKQKPQFQSILLSATLTPA--VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI-------VTPPKLRL- 638 (930)
Q Consensus 569 ~l~~~~~~~q~vl~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~- 638 (930)
.+++ ..|+++||||+|+. ...|....-..|..+...+.. |.++.+++. .+..+.++
T Consensus 256 ~lP~---~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~R-----------pvPL~~~~~~~~~l~~lvde~~~~~ 321 (1041)
T COG4581 256 LLPD---HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHR-----------PVPLEHFVYVGKGLFDLVDEKKKFN 321 (1041)
T ss_pred hcCC---CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCC-----------CCCeEEEEecCCceeeeecccccch
Confidence 8875 78999999999875 445555444445444332221 122222221 11111110
Q ss_pred -----HHHHHHHHh--hccC--------------------------------CCcCCCceEEEEecchhhHHHHHHHHhh
Q psy15524 639 -----VALASFILG--KCQN--------------------------------VNEDEESKMLVFMATQDMADYHTELLST 679 (930)
Q Consensus 639 -----~~l~~~l~~--~~~~--------------------------------~~~~~~~k~iVF~~s~~~~~~~~~~l~~ 679 (930)
.+...+... .... ......-++|+|+-+++.|+..+..+..
T Consensus 322 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ 401 (1041)
T COG4581 322 AENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILST 401 (1041)
T ss_pred hhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcc
Confidence 000111100 0000 0001245899999999999877655431
Q ss_pred h----------------------------------------cCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccc
Q psy15524 680 V----------------------------------------LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDV 719 (930)
Q Consensus 680 ~----------------------------------------~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~ 719 (930)
+ +.+|+. .+|++|-+..|..+...|..|-.+|+++|.+
T Consensus 402 ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGia--vHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT 479 (1041)
T COG4581 402 LDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIA--VHHAGLLPAIKELVEELFQEGLVKVVFATET 479 (1041)
T ss_pred cccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhh--hhccccchHHHHHHHHHHhccceeEEeehhh
Confidence 1 112555 4599999999999999999999999999999
Q ss_pred cccccCCCCccEEEE----ec----CCCChhhHHhhhcccccCCCC--ceEEEEeCc
Q psy15524 720 AARGLDLPLVDWIVQ----YT----APSSSTDYVHRVGRTARVGHE--GSSLLFLIP 766 (930)
Q Consensus 720 ~~~GlDip~v~~VI~----~~----~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~ 766 (930)
++.|+|.|.-++|+- +| .+.++.+|.|+.|||||.|-+ |.++++-.+
T Consensus 480 ~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 480 FAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred hhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 999999998887762 22 445889999999999999985 666665443
No 135
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.94 E-value=6.8e-26 Score=275.42 Aligned_cols=178 Identities=26% Similarity=0.325 Sum_probs=146.6
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||..|||+|++||+.+++|+|++++||||||||++|++|+++.+..........++.++||++|+++|++|+++.+....
T Consensus 29 ~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l 108 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPL 108 (876)
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999998753322222357889999999999999998766422
Q ss_pred -----------hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC-ccCCCccEEEEcccccccccC
Q psy15524 82 -----------KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-LKFSKVEHLVLDEADRILDQG 149 (930)
Q Consensus 82 -----------~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-~~l~~l~~vViDE~h~~~~~~ 149 (930)
...+.+.+....|+.........+...++|+|+|||++..++.+... -.++++++|||||+|.+.+..
T Consensus 109 ~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~ 188 (876)
T PRK13767 109 TEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENK 188 (876)
T ss_pred HHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCc
Confidence 12224677888888887777777778899999999999877754322 137899999999999999999
Q ss_pred cHHHHHHHHHHHhhcC-CCceEEEEEeecCC
Q psy15524 150 YERDIAEFLEILKKQK-PQFQSILLSATLTP 179 (930)
Q Consensus 150 ~~~~~~~i~~~l~~~~-~~~~~i~lSAT~~~ 179 (930)
++..+...+.++.... +.+|++++|||+++
T Consensus 189 RG~~l~~~L~rL~~l~~~~~q~IglSATl~~ 219 (876)
T PRK13767 189 RGVHLSLSLERLEELAGGEFVRIGLSATIEP 219 (876)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEecccCC
Confidence 9998888888887654 67899999999976
No 136
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3.7e-25 Score=255.47 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=114.1
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+......|..++...+..... .+.++||||+|++.++.++++|... ++.+..+|+ .+.+|+..+.+|+.+
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~-----~grpVLIft~Sve~sE~Ls~~L~~~---gI~h~vLna--kq~~REa~Iia~AG~ 645 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQK-----KGQPVLVGTASVEVSETLSRMLRAK---RIAHNVLNA--KQHDREAEIVAEAGQ 645 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhh-----CCCCEEEEeCcHHHHHHHHHHHHHc---CCCceeecC--CHHHhHHHHHHhcCC
Confidence 345556788888888865432 2789999999999999999999875 888889997 688999999999999
Q ss_pred CCcEEEeccccccccCCC---Ccc-----EEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 710 KSGVLICTDVAARGLDLP---LVD-----WIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip---~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
...|+|||++|+||+||+ +|. +||+++.|.|...|.||+|||||.|.+|.+..|++.++.-
T Consensus 646 ~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 646 KGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 999999999999999998 564 4599999999999999999999999999999999986653
No 137
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=2.4e-24 Score=251.68 Aligned_cols=325 Identities=20% Similarity=0.242 Sum_probs=245.8
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhc----C--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILD----G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~----~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
..+......+.+.|+| .-||-|..||..+.. + -|-++|+--|-|||-+++=+++..+. +|+.|.
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---------~GKQVA 647 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---------DGKQVA 647 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---------CCCeEE
Confidence 3455666777777787 469999999999885 2 48899999999999999989887775 489999
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH---HHHHhc-CCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
|+|||.-||+|.++.|++.+..++.. +..+..-.+.+.+ ...+.. ..||||+|.- ++ .+.+.++++.++
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~fPV~-I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL--~kdv~FkdLGLl 720 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGFPVR-IEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LL--SKDVKFKDLGLL 720 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCCCee-EEEecccCCHHHHHHHHHHHhcCCccEEEechH----hh--CCCcEEecCCeE
Confidence 99999999999999999999988753 3444444333333 333443 4899999952 22 256789999999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
||||-||+.-.. -+.++..+.+.-++-+|||+-+..-.++-..+++-..|.+.+... -.+.
T Consensus 721 IIDEEqRFGVk~--------KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R-----------~pV~ 781 (1139)
T COG1197 721 IIDEEQRFGVKH--------KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR-----------LPVK 781 (1139)
T ss_pred EEechhhcCccH--------HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC-----------cceE
Confidence 999999875322 123333345888999999998887777777777655554433211 1122
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
.++....+..-..++...+. .++++...+|..+..+..++.|+++.+ ...+...||.|+..+-+.++.+|
T Consensus 782 T~V~~~d~~~ireAI~REl~---------RgGQvfYv~NrV~~Ie~~~~~L~~LVP-EarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 782 TFVSEYDDLLIREAILRELL---------RGGQVFYVHNRVESIEKKAERLRELVP-EARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred EEEecCChHHHHHHHHHHHh---------cCCEEEEEecchhhHHHHHHHHHHhCC-ceEEEEeecCCCHHHHHHHHHHH
Confidence 22222222222222222222 278999999999999999999998876 46677789999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCC-CChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAP-SSSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p-~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
-+|+.+|||||.+.+.|||+|+++.+|..+.. .-.++..|..||.||.++.+.|++++.+.
T Consensus 852 ~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 852 YNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred HcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999999999999999988876654 46889999999999999999999999863
No 138
>KOG0950|consensus
Probab=99.93 E-value=3.7e-25 Score=249.86 Aligned_cols=356 Identities=20% Similarity=0.243 Sum_probs=247.3
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhH--HhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSI--QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i--~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.+++-..+...+..|...+..||..++ |.++.+++.+..+||+.|||+++.+-++..+... ...++.+.|
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--------rr~~llilp 277 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--------RRNVLLILP 277 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--------hhceeEecc
Confidence 466666666666789999999999986 6788999999999999999999999999887753 445899999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc-CCcccccceEEEEecchh
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-ETLKFSKVEHLVLDEADR 553 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-~~~~~~~l~~lVlDEah~ 553 (930)
....+..-...+..+....+..+-++. |...... .++.-++.|||-++-..+.... ..-.+..+.+||+||.|.
T Consensus 278 ~vsiv~Ek~~~l~~~~~~~G~~ve~y~-g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 278 YVSIVQEKISALSPFSIDLGFPVEEYA-GRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM 352 (1008)
T ss_pred eeehhHHHHhhhhhhccccCCcchhhc-ccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee
Confidence 998888888888888877776554433 4433221 2345689999999865444321 122467899999999999
Q ss_pred hhhcCcHHHHHHHHHHHhhc--CccceEEEEccccCHH--HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 554 ILDQGYERDIAEFLEILKKQ--KPQFQSILLSATLTPA--VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 554 l~~~g~~~~l~~i~~~l~~~--~~~~q~vl~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
+.+.+.+..++.++..+--. ....|+|++|||+++. ++.|.. ..++..-..... ..+ +..+..
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~----A~~y~t~fRPv~---L~E-~ik~G~----- 419 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD----AFVYTTRFRPVP---LKE-YIKPGS----- 419 (1008)
T ss_pred eeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhh----hhheecccCccc---chh-ccCCCc-----
Confidence 99999999988888765422 2347799999999873 334433 222211100000 000 000000
Q ss_pred EEcCchhhHHHHHHHHH---hhccCCC-----------cCCCceEEEEecchhhHHHHHHHHhhhcCC------------
Q psy15524 630 IVTPPKLRLVALASFIL---GKCQNVN-----------EDEESKMLVFMATQDMADYHTELLSTVLGE------------ 683 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~---~~~~~~~-----------~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------ 683 (930)
...... +...+..+-. ......+ -..+..+||||+++..++.++..+....+.
T Consensus 420 ~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~ 498 (1008)
T KOG0950|consen 420 LIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWE 498 (1008)
T ss_pred ccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHH
Confidence 000000 1111111110 0000000 012567999999999998877555332111
Q ss_pred -----------------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEec----
Q psy15524 684 -----------------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT---- 736 (930)
Q Consensus 684 -----------------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~---- 736 (930)
...+..+|++++.++|..+...|++|...|++||++++.|+++|+.+++|-.-
T Consensus 499 ~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~ 578 (1008)
T KOG0950|consen 499 LLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGR 578 (1008)
T ss_pred HHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcccc
Confidence 23345569999999999999999999999999999999999999999988643
Q ss_pred CCCChhhHHhhhcccccCCC--CceEEEEeCcccHHHHHHHHhcC
Q psy15524 737 APSSSTDYVHRVGRTARVGH--EGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 737 ~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
...+..+|.||+|||||+|- .|.+++++.+.|...+..+....
T Consensus 579 ~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~ 623 (1008)
T KOG0950|consen 579 EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSP 623 (1008)
T ss_pred chhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhcc
Confidence 34578899999999999987 48999999999988776776543
No 139
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=3.9e-25 Score=253.40 Aligned_cols=161 Identities=24% Similarity=0.350 Sum_probs=123.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||+.|+|+|+++|+++++|+|+++++|||+|||++|++|++.. +..+||++|+++|+.|+++.++..
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999998742 235999999999999999998765
Q ss_pred hhhcCCceeEEeeCCCchHHHHH---H-hcCCCcEEEEChHHHHHHHhcCCCc-cCCCccEEEEcccccccccC--cHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKA---R-IRKGISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEADRILDQG--YERD 153 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~---~-l~~~~~Ilv~Tp~~l~~~l~~~~~~-~l~~l~~vViDE~h~~~~~~--~~~~ 153 (930)
+ +....+.++........ . ....++|+++||+++.........+ ...++++|||||||++++|| |++.
T Consensus 75 g-----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 75 G-----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred C-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 3 44555666655443222 2 2345899999999975422110112 46789999999999999998 6777
Q ss_pred HHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 154 IAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 154 ~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+..+.. +....+++++++||||+++
T Consensus 150 ~~~l~~-l~~~~~~~~~l~lTAT~~~ 174 (470)
T TIGR00614 150 YKALGS-LKQKFPNVPIMALTATASP 174 (470)
T ss_pred HHHHHH-HHHHcCCCceEEEecCCCH
Confidence 765543 4444567889999999864
No 140
>PRK02362 ski2-like helicase; Provisional
Probab=99.93 E-value=4.8e-25 Score=266.03 Aligned_cols=164 Identities=24% Similarity=0.334 Sum_probs=140.7
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.||++|+|+|.+|++. +.+|+|++++||||||||++|.+|+++.+.. +.++||++|+++|+.|+++.+++
T Consensus 19 ~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal~i~P~raLa~q~~~~~~~ 89 (737)
T PRK02362 19 EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKALYIVPLRALASEKFEEFER 89 (737)
T ss_pred CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEEEEeChHHHHHHHHHHHHH
Confidence 4899999999999998 7789999999999999999999999998853 45799999999999999999997
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+.. .+ ..+..++|+...... ....++|+|+|||++..++++ ....++++++|||||+|.+.+.++++.++.++.
T Consensus 90 ~~~-~g-~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~ 163 (737)
T PRK02362 90 FEE-LG-VRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLIDSANRGPTLEVTLA 163 (737)
T ss_pred hhc-CC-CEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEECccccCCCcchHHHHHHHH
Confidence 643 33 667777777643321 224589999999999888775 334578999999999999999999999999999
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
+++...+++|++++|||+++
T Consensus 164 rl~~~~~~~qii~lSATl~n 183 (737)
T PRK02362 164 KLRRLNPDLQVVALSATIGN 183 (737)
T ss_pred HHHhcCCCCcEEEEcccCCC
Confidence 99988888999999999976
No 141
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.93 E-value=7.6e-25 Score=257.61 Aligned_cols=161 Identities=24% Similarity=0.326 Sum_probs=125.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..++|.|+++|++++.|+|+++++|||+|||+||++|++.. ++.+|||+|+++|+.+|...+...
T Consensus 456 FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~GiTLVISPLiSLmqDQV~~L~~~ 523 (1195)
T PLN03137 456 FGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISPLVSLIQDQIMNLLQA 523 (1195)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------CCcEEEEeCHHHHHHHHHHHHHhC
Confidence 69999999999999999999999999999999999999999853 245999999999999888777653
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhc------CCCcEEEEChHHHHH---HHhcCC-CccCCCccEEEEcccccccccC-
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIR------KGISILVATPGRLLD---HCKHTE-TLKFSKVEHLVLDEADRILDQG- 149 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~Ilv~Tp~~l~~---~l~~~~-~~~l~~l~~vViDE~h~~~~~~- 149 (930)
+ +....+.++....++...+. ..++|||+|||+|.. ++.... ......+.+|||||||++++||
T Consensus 524 G-----I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGh 598 (1195)
T PLN03137 524 N-----IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGH 598 (1195)
T ss_pred C-----CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhccc
Confidence 2 56677788877665554433 458999999999853 121111 1123568999999999999998
Q ss_pred -cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 150 -YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 150 -~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
|++++..+ ..+....+++++++||||+++
T Consensus 599 DFRpdYr~L-~~Lr~~fp~vPilALTATAT~ 628 (1195)
T PLN03137 599 DFRPDYQGL-GILKQKFPNIPVLALTATATA 628 (1195)
T ss_pred chHHHHHHH-HHHHHhCCCCCeEEEEecCCH
Confidence 88887764 334444567788899999865
No 142
>KOG0332|consensus
Probab=99.93 E-value=6.1e-26 Score=229.64 Aligned_cols=243 Identities=24% Similarity=0.343 Sum_probs=193.1
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
|||..|+.+|+.|+|.++.. +|++.++..|+|||.||.+.+|.++.. ....++++.|+||++||.|+.+.+.
T Consensus 108 M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------~~~~PQ~iCLaPtrELA~Q~~eVv~ 181 (477)
T KOG0332|consen 108 MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------DVVVPQCICLAPTRELAPQTGEVVE 181 (477)
T ss_pred hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------cccCCCceeeCchHHHHHHHHHHHH
Confidence 79999999999999999975 799999999999999999999998754 2346779999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i 157 (930)
+++... .+.....+.+.....-.. -..+|+|+||+.+.+++.....+.+..++.+|+||||.|++. ||+++-.+|
T Consensus 182 eMGKf~-~ita~yair~sk~~rG~~---i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI 257 (477)
T KOG0332|consen 182 EMGKFT-ELTASYAIRGSKAKRGNK---LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRI 257 (477)
T ss_pred HhcCce-eeeEEEEecCcccccCCc---chhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhh
Confidence 998876 355555555542111100 114799999999999998778888999999999999999875 677766665
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
...++. ..|.++||||
T Consensus 258 ~~~lP~----------------------------------------------------------------~~QllLFSAT 273 (477)
T KOG0332|consen 258 MRSLPR----------------------------------------------------------------NQQLLLFSAT 273 (477)
T ss_pred hhhcCC----------------------------------------------------------------cceEEeeech
Confidence 555442 2277777888
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEE
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFM 316 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~ 316 (930)
+...+..++.....++..+.+...+ ....+|.|+|..|.. .+|..+|..+. ..-.-++.||||
T Consensus 274 f~e~V~~Fa~kivpn~n~i~Lk~ee---------l~L~~IkQlyv~C~~~~~K~~~l~~ly-------g~~tigqsiIFc 337 (477)
T KOG0332|consen 274 FVEKVAAFALKIVPNANVIILKREE---------LALDNIKQLYVLCACRDDKYQALVNLY-------GLLTIGQSIIFC 337 (477)
T ss_pred hHHHHHHHHHHhcCCCceeeeehhh---------ccccchhhheeeccchhhHHHHHHHHH-------hhhhhhheEEEE
Confidence 8788888888888877666555443 235779999999874 67999988865 344567999999
Q ss_pred ecccchhhhHHHHhhhh
Q psy15524 317 ATQDMADYHTELLSTKK 333 (930)
Q Consensus 317 ~s~~~~~~l~~~L~~~~ 333 (930)
.|+++|..++..|+..|
T Consensus 338 ~tk~ta~~l~~~m~~~G 354 (477)
T KOG0332|consen 338 HTKATAMWLYEEMRAEG 354 (477)
T ss_pred eehhhHHHHHHHHHhcC
Confidence 99999999999998765
No 143
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=265.61 Aligned_cols=256 Identities=20% Similarity=0.248 Sum_probs=175.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+ .|+++|+++++.++.|+|++++||||+|||. |.++++..+.. .+.++|||+||++|+.|+++.++.+
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 477 6999999999999999999999999999996 55565555432 2677999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCc-----hHHHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc------
Q psy15524 81 CKSFTWIVPSWLTGGEK-----MKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ------ 148 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~-----~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~------ 148 (930)
+...+ ..+..++|+.. ...+...+. +.++|+|+||++|.+++. .+...++++|||||||+|+++
T Consensus 147 ~~~~~-~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 147 GEKVG-CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred hhhcC-ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhh
Confidence 88665 44555555543 222333444 459999999999998875 345567999999999999974
Q ss_pred -----CcH-HHHHHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHH
Q psy15524 149 -----GYE-RDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 222 (930)
Q Consensus 149 -----~~~-~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 222 (930)
||. .++..++..++.... . ....+.+.++.+.+
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~--------~---------------------------------~~~~~~i~~l~~~i 261 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRK--------Y---------------------------------EEIYEKIRELEEKI 261 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccc--------c---------------------------------chhhhHHHHHHHhh
Confidence 453 556666655543110 0 00011122222221
Q ss_pred hh-cCcCceEEEEecccchH-HHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhh
Q psy15524 223 KK-QKPQFQSVLLSATLTPA-VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 300 (930)
Q Consensus 223 ~~-~~~~~q~~~~sat~~~~-~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 300 (930)
.. .....|+++||||+++. +.. .+++++..+.+.... ....++.+.|+.++ +|...|..++..
T Consensus 262 ~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~---------~~~rnI~~~yi~~~--~k~~~L~~ll~~- 326 (1176)
T PRK09401 262 AELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV---------FYLRNIVDSYIVDE--DSVEKLVELVKR- 326 (1176)
T ss_pred hhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc---------cccCCceEEEEEcc--cHHHHHHHHHHh-
Confidence 11 11256999999999875 332 223444444443322 13467888887665 566677777732
Q ss_pred ccccccCCcceEEEEEecccc---hhhhHHHHhhhh
Q psy15524 301 CQNVNEDEESKMLVFMATQDM---ADYHTELLSTKK 333 (930)
Q Consensus 301 ~~~~~~~~~~~~iVF~~s~~~---~~~l~~~L~~~~ 333 (930)
.+.++||||+++.. |+.++..|+..|
T Consensus 327 -------l~~~~LIFv~t~~~~~~ae~l~~~L~~~g 355 (1176)
T PRK09401 327 -------LGDGGLIFVPSDKGKEYAEELAEYLEDLG 355 (1176)
T ss_pred -------cCCCEEEEEecccChHHHHHHHHHHHHCC
Confidence 23589999999888 999999999876
No 144
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=1.3e-24 Score=252.47 Aligned_cols=247 Identities=14% Similarity=0.072 Sum_probs=165.8
Q ss_pred CCCccCcHHHHHHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEE-EcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI-ILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lv-l~P~~~L~~q~~~~~~ 78 (930)
+||+ |+|+|+++++.+++|+ ++++++|||||||.+|.++.+.. .. ....++.|| ++|||+|+.|+++.++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~------~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI------GAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc------cccccceEEEeCchHHHHHHHHHHHH
Confidence 4897 9999999999999998 58888999999999776555522 11 122344555 7799999999999999
Q ss_pred HHhhhcC----------------------CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC--------CC
Q psy15524 79 KLCKSFT----------------------WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--------ET 128 (930)
Q Consensus 79 ~~~~~~~----------------------~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--------~~ 128 (930)
+++..+. .+.+..++||.....+...+..+++|||||+..+.+-.... .-
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRP 163 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccccccccc
Confidence 9987652 26788899999999999999999999999965442211100 00
Q ss_pred c---cCCCccEEEEcccccccccCcHHHHHHHHHHHh--hcCCCceEEEEEeecCCCccccccccccccccccchhhhhh
Q psy15524 129 L---KFSKVEHLVLDEADRILDQGYERDIAEFLEILK--KQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEA 203 (930)
Q Consensus 129 ~---~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~--~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~ 203 (930)
+ .+++++++|+|||| ++.+|..++..|+..+. ......
T Consensus 164 i~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rpr----------------------------------- 206 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPL----------------------------------- 206 (844)
T ss_pred chhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccc-----------------------------------
Confidence 1 26889999999999 67889988888887642 111113
Q ss_pred hhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEE
Q psy15524 204 DRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 283 (930)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (930)
|+++||||++..+..+...++.++..+.+.... .....+.+. ..
T Consensus 207 --------------------------QtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~---------l~a~ki~q~-v~ 250 (844)
T TIGR02621 207 --------------------------RVVELTATSRTDGPDRTTLLSAEDYKHPVLKKR---------LAAKKIVKL-VP 250 (844)
T ss_pred --------------------------eEEEEecCCCccHHHHHHHHccCCceeeccccc---------ccccceEEE-Ee
Confidence 555555555544444444444444443332211 112234443 33
Q ss_pred cCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 284 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 284 ~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
++.+.|...+...+... ....++++||||||++.|+.+++.|++.
T Consensus 251 v~~e~Kl~~lv~~L~~l----l~e~g~~vLVF~NTv~~Aq~L~~~L~~~ 295 (844)
T TIGR02621 251 PSDEKFLSTMVKELNLL----MKDSGGAILVFCRTVKHVRKVFAKLPKE 295 (844)
T ss_pred cChHHHHHHHHHHHHHH----HhhCCCcEEEEECCHHHHHHHHHHHHhc
Confidence 44444554444443221 1234678999999999999999999764
No 145
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=6.2e-24 Score=259.38 Aligned_cols=324 Identities=19% Similarity=0.232 Sum_probs=196.0
Q ss_pred CCCCHHHHHhHHhhhc----C-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILD----G-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~----~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
..++++|.+||..+.. | +.++++++||||||++++ .++..+.+. ....++|||+|+++|+.|+.+.|.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA------KRFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc------CccCeEEEEecHHHHHHHHHHHHH
Confidence 3589999999988763 3 569999999999999844 444444431 235689999999999999999998
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc----CCcccccceEEEEecchhhhh-------
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT----ETLKFSKVEHLVLDEADRILD------- 556 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~----~~~~~~~l~~lVlDEah~l~~------- 556 (930)
........ ....+.+...... ........|+|+|...+...+... ....+..+++||+||||+-..
T Consensus 485 ~~~~~~~~-~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 485 DTKIEGDQ-TFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred hccccccc-chhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccccc
Confidence 76422110 0001111110011 111235789999999986654321 123567899999999999531
Q ss_pred --cCc------HHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhh--------------hcC---CCEEEEccCCCC
Q psy15524 557 --QGY------ERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGM--------------TLQ---NPIQIDAADSTD 611 (930)
Q Consensus 557 --~g~------~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~--------------~~~---~~~~i~~~~~~~ 611 (930)
.+| ...+..++... +...++||||+......+.+. ++. .|..+...-...
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yF-----dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYF-----DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhc-----CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccc
Confidence 111 12334444432 345799999996433322221 011 011111100000
Q ss_pred -ccc-CccceecCCCceEEE--EEcCc---------------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHH
Q psy15524 612 -IHN-TTDSLVIPDSLKQHF--IVTPP---------------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADY 672 (930)
Q Consensus 612 -~~~-~~~~~~~~~~~~~~~--~~~~~---------------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~ 672 (930)
... ..+...........+ ...+. ..+...++..+..+... ...+|+||||.++++++.
T Consensus 637 gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~---~~~~KtiIF~~s~~HA~~ 713 (1123)
T PRK11448 637 GIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP---TGEGKTLIFAATDAHADM 713 (1123)
T ss_pred cccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc---cCCCcEEEEEcCHHHHHH
Confidence 000 000000000000000 00000 01111122222222211 124799999999999999
Q ss_pred HHHHHhhhcC------CCceEEEecCCCCHHHHHHHHHHhhcCCC-cEEEeccccccccCCCCccEEEEecCCCChhhHH
Q psy15524 673 HTELLSTVLG------ENIAFFKLHGSMSQSERTEVFKTFRSVKS-GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYV 745 (930)
Q Consensus 673 ~~~~l~~~~~------~~~~~~~lhg~~~~~~R~~v~~~F~~~~~-~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~ 745 (930)
+.+.|.+.+. .+..+..+||+++ ++..++++|+++.. .|+|+++++++|+|+|.|++||.+.++.|...|+
T Consensus 714 i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~ 791 (1123)
T PRK11448 714 VVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYE 791 (1123)
T ss_pred HHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHH
Confidence 9988876532 1224566899885 56789999999887 6999999999999999999999999999999999
Q ss_pred hhhcccccCCC
Q psy15524 746 HRVGRTARVGH 756 (930)
Q Consensus 746 qr~GRagR~g~ 756 (930)
||+||+.|...
T Consensus 792 QmIGRgtR~~~ 802 (1123)
T PRK11448 792 QMLGRATRLCP 802 (1123)
T ss_pred HHHhhhccCCc
Confidence 99999999754
No 146
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=5.7e-24 Score=210.56 Aligned_cols=167 Identities=37% Similarity=0.564 Sum_probs=140.3
Q ss_pred CHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCC
Q psy15524 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 495 (930)
Q Consensus 416 ~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 495 (930)
||+|.++++.+.+|+|+++.||||+|||++|++|++..+.+. ...+++|++|+++|+.|+++.+..++.. ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeecccccccccccccccccc-cc
Confidence 799999999999999999999999999999999999988762 2348999999999999999999999876 33
Q ss_pred cceEEEeCCCchH-HHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcC
Q psy15524 496 IVPSWLTGGEKMK-SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574 (930)
Q Consensus 496 ~~~~~~~gg~~~~-~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~ 574 (930)
.....++|+.... .....+..+++|+|+||+++.+++..... .+.+++++|+||+|.+.++++...+..+++.+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 4566678887654 44445556799999999999999987433 667799999999999999888888888888876543
Q ss_pred ccceEEEEccccCHHHHH
Q psy15524 575 PQFQSILLSATLTPAVQR 592 (930)
Q Consensus 575 ~~~q~vl~SAT~~~~~~~ 592 (930)
+.|++++|||+++.+++
T Consensus 152 -~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 -NIQIILLSATLPSNVEK 168 (169)
T ss_dssp -TSEEEEEESSSTHHHHH
T ss_pred -CCcEEEEeeCCChhHhh
Confidence 68899999999976665
No 147
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.92 E-value=9e-24 Score=215.73 Aligned_cols=169 Identities=46% Similarity=0.692 Sum_probs=141.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|++.|+++|+++++.+.+|+|+++++|||+|||++|++|+++.+.... ...+++++|++|+++|+.|+.+.++.+
T Consensus 17 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii~p~~~L~~q~~~~~~~~ 92 (203)
T cd00268 17 LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALILAPTRELALQIAEVARKL 92 (203)
T ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999987632 124678999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+ +.+..+.|+.........+..+++|+|+||+.+.+.+.+ ....+.+++++|+||+|.+.+.++...+..++..
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~ 170 (203)
T cd00268 93 GKHTN-LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER-GKLDLSKVKYLVLDEADRMLDMGFEDQIREILKL 170 (203)
T ss_pred hccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCCChhhCCEEEEeChHHhhccChHHHHHHHHHh
Confidence 76543 677778888877666666667899999999999998876 4467889999999999999988888888877776
Q ss_pred HhhcCCCceEEEEEeecC
Q psy15524 161 LKKQKPQFQSILLSATLT 178 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~ 178 (930)
++. .++++++|||++
T Consensus 171 l~~---~~~~~~~SAT~~ 185 (203)
T cd00268 171 LPK---DRQTLLFSATMP 185 (203)
T ss_pred CCc---ccEEEEEeccCC
Confidence 543 446666666654
No 148
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.92 E-value=2.4e-24 Score=229.01 Aligned_cols=247 Identities=21% Similarity=0.259 Sum_probs=191.9
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|+++|.|+|..|+.+ +++|.|.+|+++|+||||++.-++-+..+.. .|.+.|+|+|..+||+|.++.|++
T Consensus 212 ~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~KmlfLvPLVALANQKy~dF~~ 283 (830)
T COG1202 212 EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKKMLFLVPLVALANQKYEDFKE 283 (830)
T ss_pred cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCeEEEEehhHHhhcchHHHHHH
Confidence 4899999999999998 7799999999999999999999988888764 367799999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHH----HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKA----RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA 155 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~----~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~ 155 (930)
....++ ..+..-.|......... ....++||||||.|-+-.+++. + -.+.+++.|||||+|.+-+..+++.+.
T Consensus 284 rYs~Lg-lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g-~~lgdiGtVVIDEiHtL~deERG~RLd 360 (830)
T COG1202 284 RYSKLG-LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-G-KDLGDIGTVVIDEIHTLEDEERGPRLD 360 (830)
T ss_pred Hhhccc-ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-C-CcccccceEEeeeeeeccchhcccchh
Confidence 887776 55555555554433322 1223589999999999777764 3 568999999999999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEe
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLS 235 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~s 235 (930)
-++.+++...+..|+|+||||..++.
T Consensus 361 GLI~RLr~l~~~AQ~i~LSATVgNp~------------------------------------------------------ 386 (830)
T COG1202 361 GLIGRLRYLFPGAQFIYLSATVGNPE------------------------------------------------------ 386 (830)
T ss_pred hHHHHHHHhCCCCeEEEEEeecCChH------------------------------------------------------
Confidence 99999999999999999999998733
Q ss_pred cccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcC-cchhHHHHHHHHhhhcc-ccccCCcceEE
Q psy15524 236 ATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP-PKLRLVALASFILGKCQ-NVNEDEESKML 313 (930)
Q Consensus 236 at~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~-~~~~~~~~~~i 313 (930)
.+++.+-.+.+... ..|..+..+++++. ..+|+..+..+...... .....-.+++|
T Consensus 387 --------elA~~l~a~lV~y~--------------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtI 444 (830)
T COG1202 387 --------ELAKKLGAKLVLYD--------------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTI 444 (830)
T ss_pred --------HHHHHhCCeeEeec--------------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceE
Confidence 12222211222221 12455778888887 56788777777643211 11334457999
Q ss_pred EEEecccchhhhHHHHhhhhh
Q psy15524 314 VFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~~~ 334 (930)
||++|++.|+.+|.+|..+|.
T Consensus 445 VFT~SRrr~h~lA~~L~~kG~ 465 (830)
T COG1202 445 VFTYSRRRCHELADALTGKGL 465 (830)
T ss_pred EEecchhhHHHHHHHhhcCCc
Confidence 999999999999999998765
No 149
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=6e-24 Score=251.02 Aligned_cols=160 Identities=23% Similarity=0.344 Sum_probs=126.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||.+++|.|+++|+++++|+|+++++|||+|||+||++|++.. +..++|++|+++|+.|+++.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999742 235899999999999999999875
Q ss_pred hhhcCCceeEEeeCCCchHHHHH----HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC--cHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKA----RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG--YERDI 154 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~----~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~--~~~~~ 154 (930)
+ +.+..+.++........ ...+.++|+++||+++...... ..+...++++|||||||++.+|| |++.+
T Consensus 77 g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 77 G-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred C-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 3 45556666655443332 2235689999999998643222 23446789999999999999987 88888
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+...... .++.+++++|||+++
T Consensus 151 ~~l~~l~~~-~~~~~vi~lTAT~~~ 174 (591)
T TIGR01389 151 QRLGSLAER-FPQVPRIALTATADA 174 (591)
T ss_pred HHHHHHHHh-CCCCCEEEEEeCCCH
Confidence 776654443 344569999999875
No 150
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=7.4e-24 Score=249.10 Aligned_cols=160 Identities=24% Similarity=0.315 Sum_probs=123.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++++++|+|+++++|||+|||+||++|++.. +..+||++|+++|+.|+.+.++..
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------------~g~tlVisPl~sL~~dqv~~l~~~ 88 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------------DGLTLVVSPLISLMKDQVDQLLAN 88 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------------CCCEEEEecHHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999843 234999999999999999998875
Q ss_pred hhhcCCceeEEeeCCCchHHHHH----HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC--cHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKA----RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG--YERDI 154 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~----~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~--~~~~~ 154 (930)
+ +....+.++........ ...+..+++++||+++...... ..+...++++|||||||++++|| |++.+
T Consensus 89 g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y 162 (607)
T PRK11057 89 G-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQWGHDFRPEY 162 (607)
T ss_pred C-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCccccccccCcccHHH
Confidence 3 44555555554443322 2234589999999998632111 12334579999999999999997 77777
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+ ..++...++++++++|||+++
T Consensus 163 ~~L-~~l~~~~p~~~~v~lTAT~~~ 186 (607)
T PRK11057 163 AAL-GQLRQRFPTLPFMALTATADD 186 (607)
T ss_pred HHH-HHHHHhCCCCcEEEEecCCCh
Confidence 654 344445567889999999865
No 151
>PRK00254 ski2-like helicase; Provisional
Probab=99.91 E-value=1.2e-23 Score=253.15 Aligned_cols=162 Identities=23% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||+.|+|+|.+|++. +++|+|+++++|||||||++|.+|+++.+.. .+.++|||+|+++|+.|+++.+..
T Consensus 19 ~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEEEeChHHHHHHHHHHHHH
Confidence 5899999999999996 7899999999999999999999999988754 245799999999999999999987
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+. ..+ ..+..++|+...... ....++|+|+||+++..++.+ ....++++++|||||+|.+.++++++.+..++.
T Consensus 91 ~~-~~g-~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~ 164 (720)
T PRK00254 91 WE-KLG-LRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGSYDRGATLEMILT 164 (720)
T ss_pred Hh-hcC-CEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCCccchHHHHHHHH
Confidence 64 333 677777877654322 234689999999999888765 334578999999999999999999999998888
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.+. .++|++++|||+++
T Consensus 165 ~l~---~~~qiI~lSATl~n 181 (720)
T PRK00254 165 HML---GRAQILGLSATVGN 181 (720)
T ss_pred hcC---cCCcEEEEEccCCC
Confidence 764 45799999999976
No 152
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.91 E-value=5e-23 Score=241.97 Aligned_cols=166 Identities=26% Similarity=0.322 Sum_probs=141.6
Q ss_pred CCccCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~-~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|+.++.+.|++++.... .|+|+|+++|||||||+++.+.+++.+.+. +.++||++|+++||.|++++|. .
T Consensus 28 ~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--------~~k~vYivPlkALa~Ek~~~~~-~ 98 (766)
T COG1204 28 GIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--------GGKVVYIVPLKALAEEKYEEFS-R 98 (766)
T ss_pred ChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--------CCcEEEEeChHHHHHHHHHHhh-h
Confidence 55678888999987754 569999999999999999999999999762 5679999999999999999999 3
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+..++ +++...+|+...... .-.+++|+|+|||++-..+++... .+..+++|||||+|.+.+..+++.++.++.+
T Consensus 99 ~~~~G-irV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r 173 (766)
T COG1204 99 LEELG-IRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRGPVLESIVAR 173 (766)
T ss_pred HHhcC-CEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccCceehhHHHH
Confidence 44455 788888888764432 124689999999999888876443 6789999999999999998899999999999
Q ss_pred HhhcCCCceEEEEEeecCCCc
Q psy15524 161 LKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~ 181 (930)
.+..++.+|+++||||+++..
T Consensus 174 ~~~~~~~~rivgLSATlpN~~ 194 (766)
T COG1204 174 MRRLNELIRIVGLSATLPNAE 194 (766)
T ss_pred HHhhCcceEEEEEeeecCCHH
Confidence 999988899999999999854
No 153
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=2.7e-23 Score=260.40 Aligned_cols=259 Identities=17% Similarity=0.201 Sum_probs=174.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|| +|+++|+++++.++.|+|++++||||+|||++++++++.... .+.++|||+||++|+.|+++.++.+
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa~Qi~~~l~~l 145 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLVKQTVEKIESF 145 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHHHHHHHHHHHH
Confidence 589 699999999999999999999999999999977766654421 2567999999999999999999999
Q ss_pred hhhcC-CceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-------
Q psy15524 81 CKSFT-WIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ------- 148 (930)
Q Consensus 81 ~~~~~-~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~------- 148 (930)
+..++ .+.+..++|+....++. ..+.. .++|+|+||++|.+.+.. .. ..+++++||||||+|++|
T Consensus 146 ~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~--l~-~~~i~~iVVDEAD~ml~~~knid~~ 222 (1638)
T PRK14701 146 CEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE--MK-HLKFDFIFVDDVDAFLKASKNIDRS 222 (1638)
T ss_pred HhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH--Hh-hCCCCEEEEECceeccccccccchh
Confidence 87654 35566677887665543 23444 499999999999887653 11 278999999999999985
Q ss_pred ----CcHHHHHH-HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHh
Q psy15524 149 ----GYERDIAE-FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 223 (930)
Q Consensus 149 ----~~~~~~~~-i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~ 223 (930)
||.+++.. +.+.++.... . . .....+.++.+-..+.
T Consensus 223 L~llGF~~e~~~~~~~il~~~~~----------~----------------~-------------~~~~~~~~~~l~~~~~ 263 (1638)
T PRK14701 223 LQLLGFYEEIIEKAWKIIYLKKQ----------G----------------N-------------IEDAMEKREILNKEIE 263 (1638)
T ss_pred hhcCCChHHHHHHHHHhhhcccc----------c----------------c-------------cchhhhhhhhhhhhhh
Confidence 56666543 2222211000 0 0 0000111222222222
Q ss_pred hcCcCce-EEEEecccchH--HHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhh
Q psy15524 224 KQKPQFQ-SVLLSATLTPA--VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 300 (930)
Q Consensus 224 ~~~~~~q-~~~~sat~~~~--~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 300 (930)
..+...| .++||||+++. +.. +++++..+.+.... ....++.+.|+.++...+ ..+..++..
T Consensus 264 ~~~~~~~~ll~~SAT~~~r~~~~~----l~~~~l~f~v~~~~---------~~lr~i~~~yi~~~~~~k-~~L~~ll~~- 328 (1638)
T PRK14701 264 KIGNKIGCLIVASATGKAKGDRVK----LYRELLGFEVGSGR---------SALRNIVDVYLNPEKIIK-EHVRELLKK- 328 (1638)
T ss_pred hcCCCccEEEEEecCCCchhHHHH----HhhcCeEEEecCCC---------CCCCCcEEEEEECCHHHH-HHHHHHHHh-
Confidence 1122334 67899999863 332 34566666554332 234568888877655545 567677732
Q ss_pred ccccccCCcceEEEEEecccch---hhhHHHHhhhh
Q psy15524 301 CQNVNEDEESKMLVFMATQDMA---DYHTELLSTKK 333 (930)
Q Consensus 301 ~~~~~~~~~~~~iVF~~s~~~~---~~l~~~L~~~~ 333 (930)
.+.++||||+|++.+ +.++..|+..|
T Consensus 329 -------~g~~gIVF~~t~~~~e~ae~la~~L~~~G 357 (1638)
T PRK14701 329 -------LGKGGLIFVPIDEGAEKAEEIEKYLLEDG 357 (1638)
T ss_pred -------CCCCeEEEEeccccchHHHHHHHHHHHCC
Confidence 246899999998865 89999998765
No 154
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=5.2e-22 Score=199.46 Aligned_cols=311 Identities=20% Similarity=0.228 Sum_probs=211.6
Q ss_pred CCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+++|.|+.+-..++ +.+|.++.|-||+|||-. +.+.++.... .|.++.+.+|....|.+++.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 78888988776655 467899999999999985 5666666553 4888999999999999999999887
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
+.. ....+++|+..... ...++|+|...|+..- +.++++|+||+|.+.-.. ...+..-++.
T Consensus 168 F~~---~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~~~-d~~L~~Av~~ 228 (441)
T COG4098 168 FSN---CDIDLLYGDSDSYF-------RAPLVVATTHQLLRFK--------QAFDLLIIDEVDAFPFSD-DQSLQYAVKK 228 (441)
T ss_pred hcc---CCeeeEecCCchhc-------cccEEEEehHHHHHHH--------hhccEEEEeccccccccC-CHHHHHHHHH
Confidence 653 34567777754322 2689999988776543 348999999999765322 2333333333
Q ss_pred HhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhH------HHHHH
Q psy15524 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRL------VALAS 643 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~ 643 (930)
..+ ..--++.+|||.++..++-+...-..++.+..... .-|-.+........-..++ ..+..
T Consensus 229 ark--~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH----------~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~ 296 (441)
T COG4098 229 ARK--KEGATIYLTATPTKKLERKILKGNLRILKLPARFH----------GKPLPVPKFVWIGNWNKKLQRNKLPLKLKR 296 (441)
T ss_pred hhc--ccCceEEEecCChHHHHHHhhhCCeeEeecchhhc----------CCCCCCCceEEeccHHHHhhhccCCHHHHH
Confidence 222 35568999999998766544332222222211100 1111222233222222222 14555
Q ss_pred HHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccc
Q psy15524 644 FILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARG 723 (930)
Q Consensus 644 ~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~G 723 (930)
.+..... .+.+++||+++.+..+.+++.|+..++. ..+...|+.- ..|.+..++|++|+..+|++|.+++||
T Consensus 297 ~lekq~~-----~~~P~liF~p~I~~~eq~a~~lk~~~~~-~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERG 368 (441)
T COG4098 297 WLEKQRK-----TGRPVLIFFPEIETMEQVAAALKKKLPK-ETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERG 368 (441)
T ss_pred HHHHHHh-----cCCcEEEEecchHHHHHHHHHHHhhCCc-cceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcc
Confidence 5554432 2789999999999999999999765543 3444557653 579999999999999999999999999
Q ss_pred cCCCCccEEEEecCC--CChhhHHhhhcccccCCC--CceEEEEeCcccHHHH
Q psy15524 724 LDLPLVDWIVQYTAP--SSSTDYVHRVGRTARVGH--EGSSLLFLIPSEVKLV 772 (930)
Q Consensus 724 lDip~v~~VI~~~~p--~s~~~y~qr~GRagR~g~--~g~~~~~~~~~e~~~~ 772 (930)
+.+|+|++.|...-. .+-+..+|..||+||.-. .|..+.|=......+.
T Consensus 369 VTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~ 421 (441)
T COG4098 369 VTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMK 421 (441)
T ss_pred cccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHH
Confidence 999999987765433 678899999999999754 4555554444444333
No 155
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=6.8e-23 Score=236.47 Aligned_cols=342 Identities=18% Similarity=0.179 Sum_probs=222.7
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+..| |+|+-.|.+..+.-.+.-|+.+.||+|||+++.+|++-.... |..+.|++||..||.|-
T Consensus 72 rEa~~R~lG---m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD 139 (913)
T PRK13103 72 REAGKRVMG---MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRD 139 (913)
T ss_pred HHHHHHHhC---CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHH
Confidence 334444455 566666667776666778999999999999999999877654 78899999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL- 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~- 555 (930)
++.+..++..++ +.+++++++..... ++....++|+++|..-+ .|.|+.. .....+.+.++|+||+|.++
T Consensus 140 ~e~m~~l~~~lG-l~v~~i~~~~~~~e--rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 140 ANWMRPLYEFLG-LSVGIVTPFQPPEE--KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred HHHHHHHhcccC-CEEEEECCCCCHHH--HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheec
Confidence 999999998776 45667777654333 22334599999999886 3444332 12234789999999999976
Q ss_pred hc---------------CcHHHHHHHHHHHhhc----------------CccceEEEEccccCHHHHHHH----------
Q psy15524 556 DQ---------------GYERDIAEFLEILKKQ----------------KPQFQSILLSATLTPAVQRLA---------- 594 (930)
Q Consensus 556 ~~---------------g~~~~l~~i~~~l~~~----------------~~~~q~vl~SAT~~~~~~~l~---------- 594 (930)
|. .....+..++..|... ....+.+.+|-.-...++.+.
T Consensus 217 DEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~ 296 (913)
T PRK13103 217 DEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGE 296 (913)
T ss_pred cccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccch
Confidence 10 1223344455555221 011222222211000111110
Q ss_pred ------------------h---hhcCCCEEEE-------ccCC-----------------------------C-------
Q psy15524 595 ------------------G---MTLQNPIQID-------AADS-----------------------------T------- 610 (930)
Q Consensus 595 ------------------~---~~~~~~~~i~-------~~~~-----------------------------~------- 610 (930)
+ .+.++-.++- ++.. .
T Consensus 297 ~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT 376 (913)
T PRK13103 297 SLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTT 376 (913)
T ss_pred hccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeeh
Confidence 0 0111111110 0000 0
Q ss_pred ---------------Cc----------ccCccceecCCCce------EEEEEcCchhhHHHHHHHHHhhccCCCcCCCce
Q psy15524 611 ---------------DI----------HNTTDSLVIPDSLK------QHFIVTPPKLRLVALASFILGKCQNVNEDEESK 659 (930)
Q Consensus 611 ---------------~~----------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k 659 (930)
-. -...+...+|.... ...+......|..++...+..... .+.|
T Consensus 377 ~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~-----~GrP 451 (913)
T PRK13103 377 FQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMA-----LGRP 451 (913)
T ss_pred HHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCC
Confidence 00 00011122332221 112445556778887777765433 2889
Q ss_pred EEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC------------
Q psy15524 660 MLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP------------ 727 (930)
Q Consensus 660 ~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip------------ 727 (930)
+||-+.|.+..+.++.+|... +++.-.|++.....+-..+-++-+.|. |.|||++|+||.||.
T Consensus 452 VLVGT~SVe~SE~ls~~L~~~---gi~h~VLNAk~~~~EA~IIa~AG~~Ga--VTIATNMAGRGTDIkLg~n~~~~~~~~ 526 (913)
T PRK13103 452 VLVGTATIETSEHMSNLLKKE---GIEHKVLNAKYHEKEAEIIAQAGRPGA--LTIATNMAGRGTDILLGGNWEVEVAAL 526 (913)
T ss_pred EEEEeCCHHHHHHHHHHHHHc---CCcHHHhccccchhHHHHHHcCCCCCc--EEEeccCCCCCCCEecCCchHHHHHhh
Confidence 999999999999999999975 777777788766555555555555554 999999999999993
Q ss_pred --------------------Ccc-----EEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 728 --------------------LVD-----WIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 728 --------------------~v~-----~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.|. +||....|.|..--.|-.||+||.|.+|.+.+|++-++.
T Consensus 527 ~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 527 ENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred hhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 222 899999999999999999999999999999999996543
No 156
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.91 E-value=3.7e-23 Score=246.72 Aligned_cols=172 Identities=26% Similarity=0.303 Sum_probs=144.2
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|++.|+++|.+|+..+.+|+|++|++|||||||++|++|+++++.+.. ..++|+|+||+||+++|.++|+++.
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------SARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------CccEEEEechhhhHhhHHHHHHHHH
Confidence 677799999999999999999999999999999999999999998732 3369999999999999999999999
Q ss_pred hhcC-CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCC---CccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 82 KSFT-WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE---TLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 82 ~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~---~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
...+ .+....+.|+....+......+.++||++||.+|..++.+.. .+.++++++||+||+|.+- ..|+..+..+
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr-Gv~GS~vA~l 218 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR-GVQGSEVALL 218 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc-ccchhHHHHH
Confidence 8887 567777888887777767788899999999999988555432 2336889999999999873 3467777777
Q ss_pred HHHHhh----cCCCceEEEEEeecCCCc
Q psy15524 158 LEILKK----QKPQFQSILLSATLTPAT 181 (930)
Q Consensus 158 ~~~l~~----~~~~~~~i~lSAT~~~~~ 181 (930)
+++|.. .+.++|+|+.|||..+..
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~ 246 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPG 246 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChH
Confidence 766654 345789999999997644
No 157
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=4e-23 Score=204.51 Aligned_cols=162 Identities=38% Similarity=0.565 Sum_probs=137.7
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCC
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 86 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 86 (930)
||+|.++++.+..|+++++.||||+|||++|++|+++.+... ...++++++|+++|+.|+.+.+.+++.. ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeecccccccccccccccccc-cc
Confidence 799999999999999999999999999999999999988763 2347999999999999999999999876 33
Q ss_pred ceeEEeeCCCchH-HHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcC
Q psy15524 87 IVPSWLTGGEKMK-SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 165 (930)
Q Consensus 87 ~~~~~~~g~~~~~-~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~ 165 (930)
..+..++++.... .....+..+++|+|+||+++.+.+..... .+.++++|||||+|.+.++.++..+..++..+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 6677778877655 45556667799999999999999887333 667799999999999999988888888888876544
Q ss_pred CCceEEEEEeecC
Q psy15524 166 PQFQSILLSATLT 178 (930)
Q Consensus 166 ~~~~~i~lSAT~~ 178 (930)
+.+++++|||++
T Consensus 152 -~~~~i~~SAT~~ 163 (169)
T PF00270_consen 152 -NIQIILLSATLP 163 (169)
T ss_dssp -TSEEEEEESSST
T ss_pred -CCcEEEEeeCCC
Confidence 578999999997
No 158
>PRK01172 ski2-like helicase; Provisional
Probab=99.90 E-value=6e-23 Score=246.33 Aligned_cols=162 Identities=22% Similarity=0.312 Sum_probs=136.4
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
||+ |+++|.++++.+.+|+|++++||||||||+++.++++..+.. +.++||++|+++|+.|+++.+.++.
T Consensus 20 ~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~i~P~raLa~q~~~~~~~l~ 89 (674)
T PRK01172 20 DFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIYIVPLRSLAMEKYEELSRLR 89 (674)
T ss_pred CCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEEEechHHHHHHHHHHHHHHh
Confidence 665 999999999999999999999999999999999999988754 4569999999999999999998764
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
. .+ ..+....|+...... ....++|+|+|||++..++.+ ....+.++++|||||+|++.+.++++.++.++..+
T Consensus 90 ~-~g-~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~ 163 (674)
T PRK01172 90 S-LG-MRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHH-DPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSA 163 (674)
T ss_pred h-cC-CeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhC-ChhHHhhcCEEEEecchhccCCCccHHHHHHHHHH
Confidence 2 33 556666666543221 224679999999999888765 33457899999999999999999999999999988
Q ss_pred hhcCCCceEEEEEeecCC
Q psy15524 162 KKQKPQFQSILLSATLTP 179 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~ 179 (930)
+..++++|++++|||+++
T Consensus 164 ~~~~~~~riI~lSATl~n 181 (674)
T PRK01172 164 RYVNPDARILALSATVSN 181 (674)
T ss_pred HhcCcCCcEEEEeCccCC
Confidence 887888999999999976
No 159
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=9.6e-22 Score=221.41 Aligned_cols=343 Identities=20% Similarity=0.208 Sum_probs=224.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+.+|+ .++++|--..-.+++|+ ++++.||+|||+++.+|++..... |..+.|++|+..||.|
T Consensus 67 vREa~~R~lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~R 134 (764)
T PRK12326 67 AREAAERTLGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARR 134 (764)
T ss_pred HHHHHHHHcCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHH
Confidence 34444445565 56777877777777664 889999999999999999877654 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~ 555 (930)
-++.+..++..++ +.++++.++.... + ++....++|+++|...+ .|.|+.. .....+.+.+.|+||+|.++
T Consensus 135 Dae~m~~ly~~LG-Lsvg~i~~~~~~~-e-rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 135 DAEWMGPLYEALG-LTVGWITEESTPE-E-RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHHHHHHHHhcC-CEEEEECCCCCHH-H-HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 9999999998776 4566777765533 2 33345799999999876 3333321 22235678999999999876
Q ss_pred h-c--------------CcHHHHHHHHHHHhhc-----CccceEEEEccccCHHHHH------------------H----
Q psy15524 556 D-Q--------------GYERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQR------------------L---- 593 (930)
Q Consensus 556 ~-~--------------g~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~~------------------l---- 593 (930)
= . .....+..+...|... ....+.+.+|..=-..++. .
T Consensus 212 IDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~A 291 (764)
T PRK12326 212 VDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVA 291 (764)
T ss_pred eccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHH
Confidence 1 0 1223334444444321 0122334333210000000 0
Q ss_pred --Hhh-hcCCCEEEE-------ccCC-----------------------------C----------------------C-
Q psy15524 594 --AGM-TLQNPIQID-------AADS-----------------------------T----------------------D- 611 (930)
Q Consensus 594 --~~~-~~~~~~~i~-------~~~~-----------------------------~----------------------~- 611 (930)
+.. +.++-.++- +... . -
T Consensus 292 L~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGT 371 (764)
T PRK12326 292 LHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGT 371 (764)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCC
Confidence 000 111111110 0000 0 0
Q ss_pred c---------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 612 I---------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 612 ~---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
. -...+...+|...... .+......|..++...+..... .+.|+||.+.|.+.++.++++
T Consensus 372 a~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~-----~GrPVLVgt~sI~~SE~ls~~ 446 (764)
T PRK12326 372 AVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHE-----TGQPVLVGTHDVAESEELAER 446 (764)
T ss_pred ChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHH
Confidence 0 0001122333322211 2334455677777777765433 288999999999999999999
Q ss_pred HhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC----------Cc-----cEEEEecCCCCh
Q psy15524 677 LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP----------LV-----DWIVQYTAPSSS 741 (930)
Q Consensus 677 l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip----------~v-----~~VI~~~~p~s~ 741 (930)
|.+. +++...|++.-...+-..+-++-+.|. |.|||++|+||.||. .| -+||....|.|.
T Consensus 447 L~~~---gI~h~vLNAk~~~~EA~IIa~AG~~ga--VTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSr 521 (764)
T PRK12326 447 LRAA---GVPAVVLNAKNDAEEARIIAEAGKYGA--VTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSE 521 (764)
T ss_pred HHhC---CCcceeeccCchHhHHHHHHhcCCCCc--EEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchH
Confidence 9985 788888898866655555555555555 999999999999995 22 289999999999
Q ss_pred hhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 742 TDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 742 ~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.--.|-.||+||.|.+|.+.+|++-++.
T Consensus 522 RID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 522 RLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred HHHHHHhcccccCCCCCceeEEEEcchh
Confidence 9999999999999999999999986554
No 160
>KOG0344|consensus
Probab=99.90 E-value=1e-23 Score=227.30 Aligned_cols=250 Identities=26% Similarity=0.370 Sum_probs=186.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.||..|+|+|++|+|.++.++|++.|||||||||++|.+|+++++..... .....|.+++|+.||++|+.|++.++.++
T Consensus 154 ~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999999999976543 12345889999999999999999999999
Q ss_pred h--hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-CCccCCCccEEEEccccccccc-CcHHHHHH
Q psy15524 81 C--KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-ETLKFSKVEHLVLDEADRILDQ-GYERDIAE 156 (930)
Q Consensus 81 ~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~ 156 (930)
. .......+..-+...............+||+++||.++...+... ..+.+..+.++|+||+|.+++. .|..++..
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHH
Confidence 8 433322222222222222222333445899999999998888653 2367899999999999999998 88888888
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEec
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sa 236 (930)
|+..+.. ++++ .-+|||
T Consensus 313 I~sac~s--~~i~-------------------------------------------------------------~a~FSa 329 (593)
T KOG0344|consen 313 IYSACQS--PDIR-------------------------------------------------------------VALFSA 329 (593)
T ss_pred HHHHhcC--cchh-------------------------------------------------------------hhhhhc
Confidence 7766643 2333 345566
Q ss_pred ccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcC-cchhHHHHHHHHhhhccccccCCcceEEEE
Q psy15524 237 TLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP-PKLRLVALASFILGKCQNVNEDEESKMLVF 315 (930)
Q Consensus 237 t~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF 315 (930)
|++..++..+...+.++..+.+...+. ....+.|...+|. +..|+.++..++. ..-..|++||
T Consensus 330 t~~~~VEE~~~~i~~~~~~vivg~~~s---------a~~~V~QelvF~gse~~K~lA~rq~v~-------~g~~PP~lIf 393 (593)
T KOG0344|consen 330 TISVYVEEWAELIKSDLKRVIVGLRNS---------ANETVDQELVFCGSEKGKLLALRQLVA-------SGFKPPVLIF 393 (593)
T ss_pred cccHHHHHHHHHhhccceeEEEecchh---------HhhhhhhhheeeecchhHHHHHHHHHh-------ccCCCCeEEE
Confidence 666666666666666665554443331 1345777777775 4679999999993 4466799999
Q ss_pred EecccchhhhHHHHh
Q psy15524 316 MATQDMADYHTELLS 330 (930)
Q Consensus 316 ~~s~~~~~~l~~~L~ 330 (930)
+.+.++|..+...|.
T Consensus 394 VQs~eRak~L~~~L~ 408 (593)
T KOG0344|consen 394 VQSKERAKQLFEELE 408 (593)
T ss_pred EecHHHHHHHHHHhh
Confidence 999999999999996
No 161
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.7e-23 Score=233.22 Aligned_cols=161 Identities=24% Similarity=0.301 Sum_probs=129.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..+++-|+++|..+++|+|+++.+|||+||++||.+|++-. .+-+|||+|..+|+.+|++.++..
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999743 225999999999999999999887
Q ss_pred hhhcCCceeEEeeCCCchHHHH----HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC--cHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEK----ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG--YERDI 154 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~----~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~--~~~~~ 154 (930)
+ +....+++..+..+.. ....+..++++-+||++...-.. ..+.-..+.++|||||||+++|| |++++
T Consensus 81 G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 81 G-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred C-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 6 4444555554433332 23334589999999998654322 22335678999999999999998 99999
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
.++-......+ ++++++||||.++.
T Consensus 155 ~~lg~l~~~~~-~~p~~AlTATA~~~ 179 (590)
T COG0514 155 RRLGRLRAGLP-NPPVLALTATATPR 179 (590)
T ss_pred HHHHHHHhhCC-CCCEEEEeCCCChH
Confidence 98877665554 88999999999763
No 162
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=4.6e-22 Score=245.07 Aligned_cols=254 Identities=17% Similarity=0.222 Sum_probs=167.7
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|+ .|+++|+.+++.++.|+|++++||||+|||. |.+|+...+.. .+.++|||+||++|+.|+++.+++++
T Consensus 76 g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~Qi~~~l~~l~ 145 (1171)
T TIGR01054 76 GS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVIQVAEKISSLA 145 (1171)
T ss_pred CC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHHHHHHHHHHHH
Confidence 44 6999999999999999999999999999997 66777666543 25679999999999999999999998
Q ss_pred hhcCCce--eEEeeCCCchHHHH---HHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-------
Q psy15524 82 KSFTWIV--PSWLTGGEKMKSEK---ARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ------- 148 (930)
Q Consensus 82 ~~~~~~~--~~~~~g~~~~~~~~---~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~------- 148 (930)
...+... +..++|+.....+. ..+. ++++|+|+||++|.+++... .. +++++||||||+|+++
T Consensus 146 ~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~k~vd~i 221 (1171)
T TIGR01054 146 EKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKASKNVDKL 221 (1171)
T ss_pred HhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhccccHHHH
Confidence 7654222 33466776655432 3334 35999999999999887641 12 8999999999999985
Q ss_pred ----CcHHH-HHHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHh
Q psy15524 149 ----GYERD-IAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 223 (930)
Q Consensus 149 ----~~~~~-~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~ 223 (930)
||.++ +..++..++.... ....+.++.....+.
T Consensus 222 l~llGF~~e~i~~il~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~ 259 (1171)
T TIGR01054 222 LKLLGFSEELIEKAWKLIRLRLK------------------------------------------LYRALHAKKRLELLE 259 (1171)
T ss_pred HHHcCCCHHHHHHHHHHhhhccc------------------------------------------cchHHHHHHHHHHHH
Confidence 44432 3333333221100 000112222222222
Q ss_pred hcCcCce--EEEEecc-cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhh
Q psy15524 224 KQKPQFQ--SVLLSAT-LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 300 (930)
Q Consensus 224 ~~~~~~q--~~~~sat-~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 300 (930)
..+..+| .++|||| .+..+.. .++++...+.+.... ....++.+.|..+.. +...|..++..
T Consensus 260 ~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~---------~~~r~I~~~~~~~~~--~~~~L~~ll~~- 324 (1171)
T TIGR01054 260 AIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGS---------DTLRNVVDVYVEDED--LKETLLEIVKK- 324 (1171)
T ss_pred hhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCcc---------ccccceEEEEEeccc--HHHHHHHHHHH-
Confidence 2222334 6779999 4544332 234455555443322 234567787765443 24456666622
Q ss_pred ccccccCCcceEEEEEecc---cchhhhHHHHhhhh
Q psy15524 301 CQNVNEDEESKMLVFMATQ---DMADYHTELLSTKK 333 (930)
Q Consensus 301 ~~~~~~~~~~~~iVF~~s~---~~~~~l~~~L~~~~ 333 (930)
.+.++||||+++ +.|+.++..|+++|
T Consensus 325 -------l~~~~IVFv~t~~~~~~a~~l~~~L~~~g 353 (1171)
T TIGR01054 325 -------LGTGGIVYVSIDYGKEKAEEIAEFLENHG 353 (1171)
T ss_pred -------cCCCEEEEEeccccHHHHHHHHHHHHhCC
Confidence 245799999999 99999999998765
No 163
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.2e-21 Score=226.34 Aligned_cols=309 Identities=21% Similarity=0.267 Sum_probs=213.8
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+.++-+++-+++.+|||||||...-.-+++... ..+..+.+.-|.|--|.-+++.+.+.+.....-.+++
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeE
Confidence 34445556677999999999999864444444332 2344567777998888888877776665433344555
Q ss_pred EeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHH-H-HHHHHHHHhhcCccce
Q psy15524 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYER-D-IAEFLEILKKQKPQFQ 578 (930)
Q Consensus 501 ~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~-~-l~~i~~~l~~~~~~~q 578 (930)
.+-.++..+ ....|-++|.|.|+..+.+. ..++.+++||+||||. ..... . +..+...+...+++.+
T Consensus 129 ~iRfe~~~s------~~Trik~mTdGiLlrei~~D--~~Ls~ys~vIiDEaHE---RSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 129 SIRFESKVS------PRTRIKVMTDGILLREIQND--PLLSGYSVVIIDEAHE---RSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred EEEeeccCC------CCceeEEeccHHHHHHHhhC--cccccCCEEEEcchhh---hhHHHHHHHHHHHHHHhhcCCCce
Confidence 555544332 24578899999999998863 3478999999999993 22221 1 1222233444455799
Q ss_pred EEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcC-chh-hHHHHHHHHHhhccCCCcCC
Q psy15524 579 SILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP-PKL-RLVALASFILGKCQNVNEDE 656 (930)
Q Consensus 579 ~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~l~~~~~~~~~~~ 656 (930)
++.+|||+.. +++.. ++.+...+.+.+.. . .+...|.... .+. -...+...+..+ ..+.
T Consensus 198 iIimSATld~--~rfs~-~f~~apvi~i~GR~----------f--PVei~Y~~~~~~d~~l~~ai~~~v~~~----~~~~ 258 (845)
T COG1643 198 LIIMSATLDA--ERFSA-YFGNAPVIEIEGRT----------Y--PVEIRYLPEAEADYILLDAIVAAVDIH----LREG 258 (845)
T ss_pred EEEEecccCH--HHHHH-HcCCCCEEEecCCc----------c--ceEEEecCCCCcchhHHHHHHHHHHHh----ccCC
Confidence 9999999975 33433 44443333333221 1 1222331111 222 233344444333 2334
Q ss_pred CceEEEEecchhhHHHHHHHHhh-hcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEe
Q psy15524 657 ESKMLVFMATQDMADYHTELLST-VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY 735 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~-~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~ 735 (930)
.+-++||.+..++.+..++.|.+ .++..+.++.+||.|+.+++.++++--..|+.+|++||++++.+|.||+|.+||..
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDs 338 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDS 338 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecC
Confidence 78999999999999999999987 44457899999999999999999998888888899999999999999999999975
Q ss_pred c------------------CCCChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 736 T------------------APSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 736 ~------------------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
+ .|-|-.+..||.|||||.+ +|.|+-+++.++
T Consensus 339 G~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 339 GLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred CcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 5 3347788999999999986 899999998643
No 164
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=5.4e-21 Score=218.12 Aligned_cols=342 Identities=18% Similarity=0.163 Sum_probs=216.7
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+.+|. .++++|--.--.+ ...-|+.+.||-||||++.+|++-..+. |..|-|++.+-.||..-
T Consensus 68 REA~~R~lG~-r~ydVQliGglvL--h~G~IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RD 135 (925)
T PRK12903 68 REATKRVLGK-RPYDVQIIGGIIL--DLGSVAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERD 135 (925)
T ss_pred HHHHHHHhCC-CcCchHHHHHHHH--hcCCeeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhh
Confidence 3444444454 4555565444344 3445899999999999999999766544 78899999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL- 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~- 555 (930)
++.+..++..++. .++++..+... ..++....++|+++|...| .|.|+.. .....+.+.+.|+||+|.++
T Consensus 136 ae~mg~vy~fLGL-svG~i~~~~~~--~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILI 212 (925)
T PRK12903 136 AEEMGKVFNFLGL-SVGINKANMDP--NLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILI 212 (925)
T ss_pred HHHHHHHHHHhCC-ceeeeCCCCCh--HHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheee
Confidence 9999999987774 45555555433 3344456799999999876 4455432 12235778999999999876
Q ss_pred hc---------------CcHHHHHHHHHHHhhc----CccceEEEEccccCHHHHHHH-----------------hh---
Q psy15524 556 DQ---------------GYERDIAEFLEILKKQ----KPQFQSILLSATLTPAVQRLA-----------------GM--- 596 (930)
Q Consensus 556 ~~---------------g~~~~l~~i~~~l~~~----~~~~q~vl~SAT~~~~~~~l~-----------------~~--- 596 (930)
|. .+...+..++..|... ....+.+.++..-...++.+. ..
T Consensus 213 DEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~ 292 (925)
T PRK12903 213 DEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALR 292 (925)
T ss_pred cccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHH
Confidence 11 1223333444443310 112233444432111111110 00
Q ss_pred ----hcCCCEEE-------EccCC---------------------------------------------------CCc--
Q psy15524 597 ----TLQNPIQI-------DAADS---------------------------------------------------TDI-- 612 (930)
Q Consensus 597 ----~~~~~~~i-------~~~~~---------------------------------------------------~~~-- 612 (930)
+.++-.++ -+... .-.
T Consensus 293 A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~ 372 (925)
T PRK12903 293 AHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAK 372 (925)
T ss_pred HHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 01111110 00000 000
Q ss_pred --------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHh
Q psy15524 613 --------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 678 (930)
Q Consensus 613 --------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~ 678 (930)
-...+...+|...... .++.....|+.++...+..... .++|+||.|.|.+.++.++.+|.
T Consensus 373 te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~-----~gqPVLVgT~SIe~SE~ls~~L~ 447 (925)
T PRK12903 373 TEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK-----KGQPILIGTAQVEDSETLHELLL 447 (925)
T ss_pred HHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh-----cCCCEEEEeCcHHHHHHHHHHHH
Confidence 0001122334332222 2344456777777777765432 27899999999999999999998
Q ss_pred hhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCC---cc-----EEEEecCCCChhhHHhhhcc
Q psy15524 679 TVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL---VD-----WIVQYTAPSSSTDYVHRVGR 750 (930)
Q Consensus 679 ~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~---v~-----~VI~~~~p~s~~~y~qr~GR 750 (930)
+. |++...+++.-...+-..+-++-+.| .|.|||++|+||.||.- |. +||....|.|..---|..||
T Consensus 448 ~~---gi~h~vLNAk~~e~EA~IIa~AG~~G--aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGR 522 (925)
T PRK12903 448 EA---NIPHTVLNAKQNAREAEIIAKAGQKG--AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGR 522 (925)
T ss_pred HC---CCCceeecccchhhHHHHHHhCCCCC--eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcc
Confidence 75 78888888875544444444334444 49999999999999952 22 89999999999999999999
Q ss_pred cccCCCCceEEEEeCcccH
Q psy15524 751 TARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 751 agR~g~~g~~~~~~~~~e~ 769 (930)
+||.|.+|.+..|++-.+.
T Consensus 523 aGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 523 SGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred cccCCCCCcceEEEecchH
Confidence 9999999999999985543
No 165
>KOG0922|consensus
Probab=99.88 E-value=7.8e-21 Score=208.52 Aligned_cols=320 Identities=22% Similarity=0.276 Sum_probs=217.4
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+..+-+++-+||.++||||||.. +| +.|.+. .+. ..|. +-+.-|.|--|.-++++...-.+..-...+++
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~ea--G~~-~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEA--GFA-SSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhc--ccc-cCCc-EEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 4455555677799999999999984 33 223321 111 2233 77777999888888876655443322223333
Q ss_pred EeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHHHHhhcCccceE
Q psy15524 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQS 579 (930)
Q Consensus 501 ~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~~l~~~~~~~q~ 579 (930)
-+.-++..+ +...|.+.|.|.|+..+... -.++.+++||+|||| +.... +.+-.+++.+-+.+++.++
T Consensus 130 ~IRFed~ts------~~TrikymTDG~LLRE~l~D--p~LskYsvIIlDEAH---ERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 130 TIRFEDSTS------KDTRIKYMTDGMLLREILKD--PLLSKYSVIILDEAH---ERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred EEEecccCC------CceeEEEecchHHHHHHhcC--CccccccEEEEechh---hhhhHHHHHHHHHHHHHhcCCCceE
Confidence 333322222 23579999999999887653 347899999999999 44322 4455556666566678899
Q ss_pred EEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCce
Q psy15524 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESK 659 (930)
Q Consensus 580 vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k 659 (930)
+++|||+.. +..+.++.+...+.+.+.. -+++..|...+..+-.......+.+. +..++.+-
T Consensus 199 IimSATlda---~kfS~yF~~a~i~~i~GR~------------fPVei~y~~~p~~dYv~a~~~tv~~I---h~~E~~GD 260 (674)
T KOG0922|consen 199 IIMSATLDA---EKFSEYFNNAPILTIPGRT------------FPVEILYLKEPTADYVDAALITVIQI---HLTEPPGD 260 (674)
T ss_pred EEEeeeecH---HHHHHHhcCCceEeecCCC------------CceeEEeccCCchhhHHHHHHHHHHH---HccCCCCC
Confidence 999999974 3344455553333332221 12333444334433333333333332 22234789
Q ss_pred EEEEecchhhHHHHHHHHhhhcC---CCc--eEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE
Q psy15524 660 MLVFMATQDMADYHTELLSTVLG---ENI--AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734 (930)
Q Consensus 660 ~iVF~~s~~~~~~~~~~l~~~~~---~~~--~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~ 734 (930)
+|||....++.+..++.|.+... .+. .+..+||.|+.+++.++++.-..|..+|+++|++++..+.||++..||.
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVD 340 (674)
T KOG0922|consen 261 ILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVD 340 (674)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEc
Confidence 99999999999999999877632 122 4577999999999999999999999999999999999999999999997
Q ss_pred ec------------------CCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcCCc
Q psy15524 735 YT------------------APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIR 781 (930)
Q Consensus 735 ~~------------------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~~~ 781 (930)
.+ .|-|..+-.||.|||||.| +|.|+-+++.++. ..+....+|
T Consensus 341 sG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~---~~~~~~~~P 401 (674)
T KOG0922|consen 341 SGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY---DKMPLQTVP 401 (674)
T ss_pred CCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH---hhcccCCCC
Confidence 55 4558889999999999987 8999999976654 555544444
No 166
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.88 E-value=7.2e-22 Score=243.04 Aligned_cols=155 Identities=23% Similarity=0.207 Sum_probs=125.4
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhhCCc----CCCCCCeEEEEEcccHHHHHHHHHHHHHHhh-----------hcCCcee
Q psy15524 25 VRSQTGSGKTLAYAIPIIQKLQEMRPK----ISRKDGIYAVIILPTRELALQTLEIFTKLCK-----------SFTWIVP 89 (930)
Q Consensus 25 v~apTGsGKT~~~~l~~l~~l~~~~~~----~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~-----------~~~~~~~ 89 (930)
|+||||||||++|.+|+++.+...... ....++.++|||+|++||++|+.+.++.... ....+.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 0112468899999999999999999875321 1124778
Q ss_pred EEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcC-CCc
Q psy15524 90 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK-PQF 168 (930)
Q Consensus 90 ~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~-~~~ 168 (930)
...+|+....+....+.+.+||||+|||+|..++.+.....++++++|||||+|.+.+..++..+...++++.... .++
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899998888777777788999999999999887653334589999999999999998888888888888887653 568
Q ss_pred eEEEEEeecCC
Q psy15524 169 QSILLSATLTP 179 (930)
Q Consensus 169 ~~i~lSAT~~~ 179 (930)
|+|+||||+++
T Consensus 161 QrIgLSATI~n 171 (1490)
T PRK09751 161 QRIGLSATVRS 171 (1490)
T ss_pred eEEEEEeeCCC
Confidence 99999999986
No 167
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.6e-20 Score=212.35 Aligned_cols=291 Identities=19% Similarity=0.174 Sum_probs=182.8
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++|+-.|.+..+.-.+.-|+.+.||.||||++.+|++-..+. |..|-||+++..||.+-++.+..++..+
T Consensus 83 G~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 3555666666666666778999999999999999999876654 7889999999999999999999999877
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-----HHhhhc-cCCcccccceEEEEecchhhh-hc---------
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-----LDHCKH-TETLKFSKVEHLVLDEADRIL-DQ--------- 557 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-----~~~l~~-~~~~~~~~l~~lVlDEah~l~-~~--------- 557 (930)
+. .++++.++.. .+.++....+||+++|++.+ .|.+.. ......+.+.+.|+||+|.++ |.
T Consensus 154 GL-tvg~i~~~~~--~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg 230 (939)
T PRK12902 154 GL-SVGLIQQDMS--PEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISG 230 (939)
T ss_pred CC-eEEEECCCCC--hHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccC
Confidence 64 5566666543 34445567899999999987 444432 223456789999999999875 11
Q ss_pred ------CcHHHHHHHHHHHhh------c-----CccceEEEEccccCHHHHHH----------------Hh------h-h
Q psy15524 558 ------GYERDIAEFLEILKK------Q-----KPQFQSILLSATLTPAVQRL----------------AG------M-T 597 (930)
Q Consensus 558 ------g~~~~l~~i~~~l~~------~-----~~~~q~vl~SAT~~~~~~~l----------------~~------~-~ 597 (930)
........+...+.. . ....+.+.++..=-..++.+ .. . +
T Consensus 231 ~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf 310 (939)
T PRK12902 231 QVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELF 310 (939)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHH
Confidence 122333444444433 1 11234444443211111111 00 0 1
Q ss_pred cCCCEEEE-------ccCC---------------------------------------------------CCc-------
Q psy15524 598 LQNPIQID-------AADS---------------------------------------------------TDI------- 612 (930)
Q Consensus 598 ~~~~~~i~-------~~~~---------------------------------------------------~~~------- 612 (930)
.++-.++- ++.. .-.
T Consensus 311 ~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~E 390 (939)
T PRK12902 311 IKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVE 390 (939)
T ss_pred hcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHH
Confidence 11111110 0000 000
Q ss_pred ---ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC
Q psy15524 613 ---HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE 683 (930)
Q Consensus 613 ---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~ 683 (930)
-.......+|...... .+......|..++...+..... .+.|+||-+.|.+..+.++++|.+.
T Consensus 391 f~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~-----~GrPVLIgT~SVe~SE~ls~~L~~~--- 462 (939)
T PRK12902 391 FEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHK-----QGRPVLVGTTSVEKSELLSALLQEQ--- 462 (939)
T ss_pred HHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHh-----CCCCEEEeeCCHHHHHHHHHHHHHc---
Confidence 0001122333332222 2334445677777777665432 2889999999999999999999975
Q ss_pred CceEEEecCC-C-CHHHHHHHHHHhhcCCCcEEEeccccccccCC
Q psy15524 684 NIAFFKLHGS-M-SQSERTEVFKTFRSVKSGVLICTDVAARGLDL 726 (930)
Q Consensus 684 ~~~~~~lhg~-~-~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDi 726 (930)
|++...+++. . ...+-..|-++-+.|. |.|||++|+||.||
T Consensus 463 gi~h~vLNAk~~~~~~EA~IIa~AG~~Ga--VTIATNMAGRGTDI 505 (939)
T PRK12902 463 GIPHNLLNAKPENVEREAEIVAQAGRKGA--VTIATNMAGRGTDI 505 (939)
T ss_pred CCchheeeCCCcchHhHHHHHHhcCCCCc--EEEeccCCCCCcCE
Confidence 7888888886 2 2444455555555555 99999999999998
No 168
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.87 E-value=5.4e-21 Score=229.70 Aligned_cols=155 Identities=26% Similarity=0.326 Sum_probs=120.6
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
+||+ |||.|++||+.++++ +|.+++||||+|||++|++|++..+.. +.+++||+||++||.|++
T Consensus 448 ~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlvLvPT~~LA~Q~~ 517 (926)
T TIGR00580 448 FPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAVLVPTTLLAQQHF 517 (926)
T ss_pred CCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEEEeCcHHHHHHHH
Confidence 5784 999999999999875 799999999999999999999988754 567999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+++++..++ +.+..++|+....+.. ..+.. .++|+||||..+ . ..+.+++++++||||+|++.
T Consensus 518 ~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEahrfg---- 586 (926)
T TIGR00580 518 ETFKERFANFP-VTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEEQRFG---- 586 (926)
T ss_pred HHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeecccccc----
Confidence 99999987665 6677777776544333 23333 599999999532 2 34568999999999999852
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
..... .+.....++++++||||+.+.
T Consensus 587 -v~~~~---~L~~~~~~~~vL~~SATpipr 612 (926)
T TIGR00580 587 -VKQKE---KLKELRTSVDVLTLSATPIPR 612 (926)
T ss_pred -hhHHH---HHHhcCCCCCEEEEecCCCHH
Confidence 22222 233445567899999998653
No 169
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.87 E-value=2.1e-20 Score=215.10 Aligned_cols=343 Identities=19% Similarity=0.192 Sum_probs=212.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++....+|+. ++++| .+..+.-.+.-|+++.||.|||+++.+|++-.... |..|-||+++..||.+
T Consensus 65 vrEa~~R~lG~r-~ydvQ--lig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~R 132 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQ--LIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKR 132 (870)
T ss_pred HHHHHHHHhCCC-CCchH--hhhhHhhcCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHH
Confidence 334444445543 44555 45555556778999999999999999999754433 7889999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~ 555 (930)
.++.+..++..++ +.++++.++... +.++....++|+++|...+ .|.|+.. .....+.+.+.|+||+|.++
T Consensus 133 D~e~m~pvy~~LG-Lsvg~i~~~~~~--~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 133 DQEWMGQIYRFLG-LTVGLIQEGMSS--EERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHHHHHcC-CceeeeCCCCCh--HHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999999998877 455666666554 3344456799999999765 2333321 22235678999999999875
Q ss_pred -hc---------------CcHHHHHHHHHHHhhc-----CccceEEEEccccCHHHHHHH----------------hh--
Q psy15524 556 -DQ---------------GYERDIAEFLEILKKQ-----KPQFQSILLSATLTPAVQRLA----------------GM-- 596 (930)
Q Consensus 556 -~~---------------g~~~~l~~i~~~l~~~-----~~~~q~vl~SAT~~~~~~~l~----------------~~-- 596 (930)
|. ........+...|... ....+.+.++-.-...++.+. ..
T Consensus 210 IDeArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL 289 (870)
T CHL00122 210 IDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNAL 289 (870)
T ss_pred eccCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence 11 0222333333333321 001122222221000011100 00
Q ss_pred -----hcCCCEEEE-------ccCC---------------------------------------------------CCc-
Q psy15524 597 -----TLQNPIQID-------AADS---------------------------------------------------TDI- 612 (930)
Q Consensus 597 -----~~~~~~~i~-------~~~~---------------------------------------------------~~~- 612 (930)
+.+|-.++- ++.. .-.
T Consensus 290 ~A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa 369 (870)
T CHL00122 290 KAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTA 369 (870)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCC
Confidence 001110000 0000 000
Q ss_pred ---------ccCccceecCCCceEE------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHH
Q psy15524 613 ---------HNTTDSLVIPDSLKQH------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELL 677 (930)
Q Consensus 613 ---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l 677 (930)
....+...+|...... .+......|..++...+..... .+.|+||-+.|.+..+.++.+|
T Consensus 370 ~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~-----~grPVLIgT~SIe~SE~ls~~L 444 (870)
T CHL00122 370 KTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQ-----TGRPILIGTTTIEKSELLSQLL 444 (870)
T ss_pred HHHHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHh-----cCCCEEEeeCCHHHHHHHHHHH
Confidence 0001112233322211 2334445677777766655332 2889999999999999999999
Q ss_pred hhhcCCCceEEEecCCC--CHHHHHHHHHHhhcCCCcEEEeccccccccCCC---C------------------------
Q psy15524 678 STVLGENIAFFKLHGSM--SQSERTEVFKTFRSVKSGVLICTDVAARGLDLP---L------------------------ 728 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~--~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip---~------------------------ 728 (930)
.+. |++...+++.- ...+-..|-++-+.|. |.|||++|+||.||. +
T Consensus 445 ~~~---gi~h~vLNAk~~~~~~EA~IIA~AG~~G~--VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (870)
T CHL00122 445 KEY---RLPHQLLNAKPENVRRESEIVAQAGRKGS--ITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKIST 519 (870)
T ss_pred HHc---CCccceeeCCCccchhHHHHHHhcCCCCc--EEEeccccCCCcCeecCCchhHHHHHHHhhhhccccccccccc
Confidence 885 88888889874 2455555555555555 999999999999982 2
Q ss_pred --------------------------------------------------------------------c-----cEEEEe
Q psy15524 729 --------------------------------------------------------------------V-----DWIVQY 735 (930)
Q Consensus 729 --------------------------------------------------------------------v-----~~VI~~ 735 (930)
| -+||..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GGL~VIgT 599 (870)
T CHL00122 520 ISQNFLNILNSLKNDLKFLSLSDFENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGT 599 (870)
T ss_pred ccccchhhhhhcccchhhhcccccccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCCCEEEec
Confidence 0 146666
Q ss_pred cCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 736 TAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 736 ~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
....|..---|..||+||.|.+|.+..|++=++.
T Consensus 600 ErheSrRIDnQLrGRaGRQGDPG~s~f~lSLED~ 633 (870)
T CHL00122 600 ERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDN 633 (870)
T ss_pred CcCchHHHHHHHhccccCCCCCCcceEEEEeccH
Confidence 6777888888999999999999999999996554
No 170
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.86 E-value=1.3e-20 Score=231.36 Aligned_cols=154 Identities=23% Similarity=0.313 Sum_probs=118.9
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
++| .||+.|++||+.++++ +|+|+++|||+|||++|+.+++..+. .+.+++||+||++||.|++
T Consensus 597 ~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLvPT~eLA~Q~~ 666 (1147)
T PRK10689 597 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLVPTTLLAQQHY 666 (1147)
T ss_pred CCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHH
Confidence 467 6999999999999987 79999999999999999988877653 2677999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHHHHhc----CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR----KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.|++.+...+ +.+.+++|+....++...+. +.++|+||||+.+ . ..+.++++++|||||+|++ |+
T Consensus 667 ~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahrf---G~ 736 (1147)
T PRK10689 667 DNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHRF---GV 736 (1147)
T ss_pred HHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhhc---ch
Confidence 99999876654 66777888777665554432 4689999999744 2 3345789999999999997 33
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
.. . ..++..++++|+++||||+.+
T Consensus 737 ~~--~---e~lk~l~~~~qvLl~SATpip 760 (1147)
T PRK10689 737 RH--K---ERIKAMRADVDILTLTATPIP 760 (1147)
T ss_pred hH--H---HHHHhcCCCCcEEEEcCCCCH
Confidence 21 1 223344456677777777754
No 171
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.86 E-value=7.8e-20 Score=219.12 Aligned_cols=322 Identities=15% Similarity=0.238 Sum_probs=207.6
Q ss_pred CCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.|+++|.+++..++ .|.+.|+.-..|.|||+.. +.++..+... +.....+|||||. .+..||.+.+.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~-----~~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEY-----RGITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHh-----cCCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 78899999998775 4678999999999999974 4444444331 1223458999996 7788999999987
Q ss_pred hccCCCcceEEEeCCCchHHHHH-H--HhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKA-R--IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~-~--~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
+.. ..+..+.|......... . .....+|+|+|++.+...... +.--.+++||+||||++-.. ...+...
T Consensus 242 ~p~---l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklska 313 (1033)
T PLN03142 242 CPV---LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKT 313 (1033)
T ss_pred CCC---CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHH
Confidence 642 33444555433222111 1 123578999999988654322 22235789999999998543 2334455
Q ss_pred HHHHhhcCccceEEEEccccCH-HHHHH---Hhhhc--------------------------------------------
Q psy15524 567 LEILKKQKPQFQSILLSATLTP-AVQRL---AGMTL-------------------------------------------- 598 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~SAT~~~-~~~~l---~~~~~-------------------------------------------- 598 (930)
+..+. ....+++|+|+-. ...++ +....
T Consensus 314 lr~L~----a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ksd 389 (1033)
T PLN03142 314 MRLFS----TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSD 389 (1033)
T ss_pred HHHhh----cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHH
Confidence 55553 2345889999632 11111 11000
Q ss_pred -----CCC--EEEEccCCC--C---------------ccc-C-------------ccceec-----CCC-ceEEEEEcCc
Q psy15524 599 -----QNP--IQIDAADST--D---------------IHN-T-------------TDSLVI-----PDS-LKQHFIVTPP 634 (930)
Q Consensus 599 -----~~~--~~i~~~~~~--~---------------~~~-~-------------~~~~~~-----~~~-~~~~~~~~~~ 634 (930)
... ..+.+.-.. . ... . .....+ |.. ....-..+..
T Consensus 390 V~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~ 469 (1033)
T PLN03142 390 VEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVEN 469 (1033)
T ss_pred HhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhh
Confidence 000 000000000 0 000 0 000000 000 0000001223
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCC---C
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVK---S 711 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~---~ 711 (930)
..|+..+..++..... .+.++|||+......+.+.+.|... ++.+..+||+++..+|..+++.|.+.. .
T Consensus 470 SgKl~lLdkLL~~Lk~-----~g~KVLIFSQft~~LdiLed~L~~~---g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~ 541 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKE-----RDSRVLIFSQMTRLLDILEDYLMYR---GYQYCRIDGNTGGEDRDASIDAFNKPGSEKF 541 (1033)
T ss_pred hhHHHHHHHHHHHHHh-----cCCeEEeehhHHHHHHHHHHHHHHc---CCcEEEECCCCCHHHHHHHHHHhccccCCce
Confidence 4566666665554322 2789999999999999998888753 788999999999999999999997543 3
Q ss_pred cEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE
Q psy15524 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762 (930)
Q Consensus 712 ~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~ 762 (930)
-+|++|.+.+.|||+..+++||+||+|+++..+.|++||+.|.|+...+.+
T Consensus 542 VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~V 592 (1033)
T PLN03142 542 VFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 592 (1033)
T ss_pred EEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEE
Confidence 578999999999999999999999999999999999999999999765543
No 172
>KOG0923|consensus
Probab=99.85 E-value=6.9e-20 Score=198.27 Aligned_cols=328 Identities=18% Similarity=0.234 Sum_probs=224.8
Q ss_pred CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..-...++-.+.+.++-.++-++|.+.||||||.. +|=+ |... +.+ ..|.++=+--|.|--|.-++.++.+-.
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQy--L~Ea--Gyt-k~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQY--LYEA--GYT-KGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHH--HHhc--ccc-cCCceEeecCcchHHHHHHHHHHHHHh
Confidence 33345566677788888888899999999999984 4432 3321 111 345556777799999998887665544
Q ss_pred ccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCc-HHHHHHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY-ERDIAEFLEI 569 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~-~~~l~~i~~~ 569 (930)
+.--...+++-..-++..+++ .-|=++|.|.|+.-+.. ...+.+.+++|+|||| +... -+.+..++..
T Consensus 335 gvkLG~eVGYsIRFEdcTSek------TvlKYMTDGmLlREfL~--epdLasYSViiiDEAH---ERTL~TDILfgLvKD 403 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCTSEK------TVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAH---ERTLHTDILFGLVKD 403 (902)
T ss_pred CcccccccceEEEeccccCcc------eeeeeecchhHHHHHhc--cccccceeEEEeehhh---hhhhhhhHHHHHHHH
Confidence 321112233333333333322 33559999999876654 4568899999999999 3332 2445556666
Q ss_pred HhhcCccceEEEEccccCHHHHHHHhhhcCC-CEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhh
Q psy15524 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 648 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 648 (930)
+.+.+++...+..|||+.. +.+ +.++.+ |++. +.+. .-++.-+|...|..+-+.+....+.+.
T Consensus 404 Iar~RpdLKllIsSAT~DA--ekF-S~fFDdapIF~-iPGR------------RyPVdi~Yt~~PEAdYldAai~tVlqI 467 (902)
T KOG0923|consen 404 IARFRPDLKLLISSATMDA--EKF-SAFFDDAPIFR-IPGR------------RYPVDIFYTKAPEADYLDAAIVTVLQI 467 (902)
T ss_pred HHhhCCcceEEeeccccCH--HHH-HHhccCCcEEe-ccCc------------ccceeeecccCCchhHHHHHHhhheee
Confidence 6666789999999999964 233 333433 4442 2111 012344566666666666655555443
Q ss_pred ccCCCcCCCceEEEEecchhhHHHHHHHHhhhc---C---CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccc
Q psy15524 649 CQNVNEDEESKMLVFMATQDMADYHTELLSTVL---G---ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAAR 722 (930)
Q Consensus 649 ~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~---~---~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~ 722 (930)
. ...+.+-+|||....++.+...+.|.+.. + ..+-++.+|++++.+.+..|++---.|..+|++||++|+.
T Consensus 468 H---~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAET 544 (902)
T KOG0923|consen 468 H---LTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAET 544 (902)
T ss_pred E---eccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhh
Confidence 3 33347899999999999877776665542 1 2467888999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEec------------------CCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 723 GLDLPLVDWIVQYT------------------APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 723 GlDip~v~~VI~~~------------------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
.+.|++|..||.-+ .|-|...-.||.|||||.| +|.|+-+++.. .|...|...
T Consensus 545 SlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~--aY~~eLE~~ 615 (902)
T KOG0923|consen 545 SLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW--AYEHELEEM 615 (902)
T ss_pred ceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh--hhhhhhccC
Confidence 99999999999754 4457778899999999998 99999998743 344444443
No 173
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.85 E-value=5.9e-20 Score=219.54 Aligned_cols=337 Identities=20% Similarity=0.198 Sum_probs=214.3
Q ss_pred CCHHHHHhHHhhhcC---C-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 415 VTTVQQLSIQPILDG---G-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~---~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..+.|..++..+... . .+++.||||+|||.+.+++++..+... .....+++++.|++.+..++++.++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 377888888887754 4 688999999999999999998877652 1257789999999999999999999877
Q ss_pred ccCCCcceEEEeCCCchHHHHHH--------------HhcCCcEEEECchhHHHhhhccCCcc-c--ccceEEEEecchh
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKAR--------------IRKGISILVATPGRLLDHCKHTETLK-F--SKVEHLVLDEADR 553 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~~--------------~~~~~~Ilv~Tp~rl~~~l~~~~~~~-~--~~l~~lVlDEah~ 553 (930)
......... ..|.......... ..-...+.++||-.+.........+. + =..+.+|+||+|.
T Consensus 271 ~~~~~~~~~-~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKS-LHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccccccccc-ccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 654322211 1121111100000 00012345555544433211111111 1 1246899999999
Q ss_pred hhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcC
Q psy15524 554 ILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP 633 (930)
Q Consensus 554 l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (930)
+.+...-..+..++..+... +..++++|||+|+...+.......+...+......... .. .. .+.+......
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~--g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-e~----~~~~~~~~~~ 421 (733)
T COG1203 350 YADETMLAALLALLEALAEA--GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPK-ED-EP----GLKRKERVDV 421 (733)
T ss_pred hcccchHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHHHhcccceecccccccc-cc-cc----ccccccchhh
Confidence 88775555666666666653 67899999999999888777666544333222110000 00 00 0000000000
Q ss_pred chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh----cC
Q psy15524 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR----SV 709 (930)
Q Consensus 634 ~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~----~~ 709 (930)
.......+...+.. ....+.+++|-|+|++.|..+++.|+.. +..++.+||.+...+|.+.++... .+
T Consensus 422 ~~~~~~~~~~~~~~-----~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~---~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~ 493 (733)
T COG1203 422 EDGPQEELIELISE-----EVKEGKKVLVIVNTVDRAIELYEKLKEK---GPKVLLLHSRFTLKDREEKERELKKLFKQN 493 (733)
T ss_pred hhhhhHhhhhcchh-----hhccCCcEEEEEecHHHHHHHHHHHHhc---CCCEEEEecccchhhHHHHHHHHHHHHhcc
Confidence 00000011111111 1123789999999999999999999985 226899999999999998888544 46
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC--CCceEEEEeCcccHHHHHHHH
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG--HEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~e~~~~~~l~ 776 (930)
...|+|||++.+-|+|+. .+++|-- +..++..+||+||++|-| ..|..+++.......+..+..
T Consensus 494 ~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~ 559 (733)
T COG1203 494 EGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSY 559 (733)
T ss_pred CCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhh
Confidence 778999999999999994 7776654 445889999999999999 567777766655555544443
No 174
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.85 E-value=1.6e-20 Score=223.21 Aligned_cols=154 Identities=25% Similarity=0.371 Sum_probs=121.8
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
++| +||++|++|++.+.++ +|.|++||||||||++|++|++..+.. |.+++|++||++||.|++
T Consensus 258 l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 258 LPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALMAPTEILAEQHY 327 (681)
T ss_pred CCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEeccHHHHHHHH
Confidence 467 5999999999999887 489999999999999999999988743 678999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+++++...+ +.+..++|+....... ..+.. .++|+||||+.+.+ .+.++++++|||||+|++....
T Consensus 328 ~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg~~q- 399 (681)
T PRK10917 328 ENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFGVEQ- 399 (681)
T ss_pred HHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhhHHH-
Confidence 99999987765 7788899988754332 33333 59999999987733 3457899999999999863221
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+. .+......+++++||||+.+
T Consensus 400 ----r~---~l~~~~~~~~iL~~SATp~p 421 (681)
T PRK10917 400 ----RL---ALREKGENPHVLVMTATPIP 421 (681)
T ss_pred ----HH---HHHhcCCCCCEEEEeCCCCH
Confidence 11 22233445789999999865
No 175
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.84 E-value=6.7e-19 Score=215.23 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=87.0
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc-CCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL-GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~-~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T 717 (930)
..+...+...... .+++++|||+|.+..+.+++.|.... ..++.+. ..+.. ..|..+++.|++++..||+||
T Consensus 660 ~~ia~~i~~l~~~----~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt 732 (850)
T TIGR01407 660 QEIASYIIEITAI----TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGT 732 (850)
T ss_pred HHHHHHHHHHHHh----cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEc
Confidence 3455555444332 15799999999999999999987532 1234443 33333 578999999999999999999
Q ss_pred cccccccCCCCcc--EEEEecCCCC------------------------------hhhHHhhhcccccCCCCceEEEEeC
Q psy15524 718 DVAARGLDLPLVD--WIVQYTAPSS------------------------------STDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 718 ~~~~~GlDip~v~--~VI~~~~p~s------------------------------~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
+.+++|+|+|+.. +||....|.. ...+.|.+||.-|...+...++++.
T Consensus 733 ~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 733 SSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred ceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 9999999999877 4555665531 1245699999999887755666665
Q ss_pred cc
Q psy15524 766 PS 767 (930)
Q Consensus 766 ~~ 767 (930)
++
T Consensus 813 ~R 814 (850)
T TIGR01407 813 RR 814 (850)
T ss_pred cc
Confidence 43
No 176
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=3.8e-19 Score=204.80 Aligned_cols=329 Identities=20% Similarity=0.267 Sum_probs=214.4
Q ss_pred CCCCHHHHHhHHhhhcC----CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILDG----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~----~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..+++-|+.++..+... +-.++.+.||||||.+|+=.+-+.+.. |..+|+|+|-.+|-.|+.+.|+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHH
Confidence 35677899999988765 458999999999999988777777654 88999999999999999999999
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc---C---cHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ---G---YERD 562 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~---g---~~~~ 562 (930)
.++.-...-.+.+..++....+.+.......|+||| ++.-...++++.+||+||-|.-... + ...+
T Consensus 268 rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 268 RFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred HhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhhcCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 887432222333444444444444444668999999 3322345899999999999954311 1 2345
Q ss_pred HHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCch--h----
Q psy15524 563 IAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK--L---- 636 (930)
Q Consensus 563 l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---- 636 (930)
+....... .++++|+-|||++=+ .+....-.....+....... .. .+|. ..++..... .
T Consensus 340 vA~~Ra~~----~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~-~a-----~~p~---v~iiDmr~e~~~~~~~ 404 (730)
T COG1198 340 VAVLRAKK----ENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAG-RA-----RLPR---VEIIDMRKEPLETGRS 404 (730)
T ss_pred HHHHHHHH----hCCCEEEecCCCCHH--HHHhhhcCceEEEEcccccc-cc-----CCCc---ceEEeccccccccCcc
Confidence 55544444 378999999998743 33333222222232222111 00 0000 011100000 0
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecchhhH----------------------------------------------
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMA---------------------------------------------- 670 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~---------------------------------------------- 670 (930)
--..+...+...... +.++|+|.+.+.-+
T Consensus 405 lS~~Ll~~i~~~l~~-----geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp 479 (730)
T COG1198 405 LSPALLEAIRKTLER-----GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCP 479 (730)
T ss_pred CCHHHHHHHHHHHhc-----CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCC
Confidence 012334444333222 45566665543211
Q ss_pred --------------HHHHHHHhhhcCCCceEEEecCCCCHHH--HHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE
Q psy15524 671 --------------DYHTELLSTVLGENIAFFKLHGSMSQSE--RTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734 (930)
Q Consensus 671 --------------~~~~~~l~~~~~~~~~~~~lhg~~~~~~--R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~ 734 (930)
+.+.+.|.+.++ +..+..+.++.+... -+..+..|.+|+.+|||.|.+++-|.|+|+++.|..
T Consensus 480 ~Cgs~~L~~~G~GterieeeL~~~FP-~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgv 558 (730)
T COG1198 480 ECGSEHLRAVGPGTERIEEELKRLFP-GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGV 558 (730)
T ss_pred CCCCCeeEEecccHHHHHHHHHHHCC-CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEE
Confidence 333455555543 577777777766543 467799999999999999999999999999998876
Q ss_pred ecCCC------------ChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhcC
Q psy15524 735 YTAPS------------SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 735 ~~~p~------------s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
.|... ....+.|-.|||||.+++|..++-....+...++.+...+
T Consensus 559 l~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~d 615 (730)
T COG1198 559 LDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGD 615 (730)
T ss_pred EechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcC
Confidence 66432 2346789999999999999999988888877777777654
No 177
>KOG0949|consensus
Probab=99.84 E-value=1.3e-19 Score=203.59 Aligned_cols=168 Identities=16% Similarity=0.148 Sum_probs=117.8
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.|..||.+.+..+=.++.+++.|||.+|||++---+ ++...+ ..+..-+|+++||++|+.|+...+...+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~-iEKVLR------esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYA-IEKVLR------ESDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHH-HHHHHh------hcCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 466799999998888999999999999999874433 344433 1456669999999999999998888777433
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc--CCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~--~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
.......+.|.-...-... .-+|+|+|+-|+.+..++... ......+++++|+||+|.+..+.-+-..++++..+
T Consensus 584 t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 3222222222222111111 125899999999998887663 23357899999999999998766555555555554
Q ss_pred hcCccceEEEEccccCHH--HHHHHh
Q psy15524 572 KQKPQFQSILLSATLTPA--VQRLAG 595 (930)
Q Consensus 572 ~~~~~~q~vl~SAT~~~~--~~~l~~ 595 (930)
.++++++|||+.+. ...|..
T Consensus 661 ----~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 661 ----PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred ----CCCeeEEecccCCHHHHHHHHH
Confidence 67899999998753 344443
No 178
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=7.7e-20 Score=216.18 Aligned_cols=159 Identities=25% Similarity=0.336 Sum_probs=121.4
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
++| +||+.|++|++.++++ .+.+++||||||||++|++|++..+.. +.+++|++||++||.|++
T Consensus 232 lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 232 LPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMAPTEILAEQHY 301 (630)
T ss_pred CCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEECCHHHHHHHHH
Confidence 467 6999999999999876 368999999999999999999988753 667999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHH---HHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+++++...+ +.+..++|+...... ...+. +.++|+||||+.+.+ .+.+.++++|||||+|++....+
T Consensus 302 ~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~qr 374 (630)
T TIGR00643 302 NSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVEQR 374 (630)
T ss_pred HHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhccHHHH
Confidence 99999987655 778888888765543 23333 458999999987743 24578999999999998643221
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
..+.... .....++++++|||+.+.+
T Consensus 375 ----~~l~~~~-~~~~~~~~l~~SATp~prt 400 (630)
T TIGR00643 375 ----KKLREKG-QGGFTPHVLVMSATPIPRT 400 (630)
T ss_pred ----HHHHHhc-ccCCCCCEEEEeCCCCcHH
Confidence 1111111 1112578999999987633
No 179
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.83 E-value=4.6e-18 Score=198.45 Aligned_cols=136 Identities=24% Similarity=0.345 Sum_probs=118.4
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
+...++..+...+...... +.++||||+|++.++.+++.|.+. |+.+..+||++++.+|..+++.|+.|+..
T Consensus 423 ~~~~qi~~Ll~eI~~~~~~-----g~~vLIf~~tk~~ae~L~~~L~~~---gi~~~~lh~~~~~~eR~~~l~~fr~G~i~ 494 (655)
T TIGR00631 423 PTDGQVDDLLSEIRQRVAR-----NERVLVTTLTKKMAEDLTDYLKEL---GIKVRYLHSEIDTLERVEIIRDLRLGEFD 494 (655)
T ss_pred eccchHHHHHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHhhh---ccceeeeeCCCCHHHHHHHHHHHhcCCce
Confidence 3345666777777654332 679999999999999999999875 78888899999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEec-----CCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYT-----APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~-----~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|||||+++++|+|+|++++||++| .|.+...|+||+|||||. ..|.+++|+...+......+.+
T Consensus 495 VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 495 VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred EEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999999999999999999998 799999999999999998 6899999998877666555544
No 180
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.83 E-value=3e-18 Score=195.23 Aligned_cols=289 Identities=20% Similarity=0.246 Sum_probs=192.1
Q ss_pred HHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 405 NLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 405 ~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
.+.+..|+ .|...|+--...++.|++.-+.||||.|||.--++..+-.. ..|.++++|+||+.|+.|+++
T Consensus 74 fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---------~kgkr~yii~PT~~Lv~Q~~~ 143 (1187)
T COG1110 74 FFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---------KKGKRVYIIVPTTTLVRQVYE 143 (1187)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---------hcCCeEEEEecCHHHHHHHHH
Confidence 34444576 89999999999999999999999999999975444433222 347899999999999999999
Q ss_pred HHHHhhccCCCcceEEEeCCCchHH----HHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-
Q psy15524 485 IFTKLCKSFTWIVPSWLTGGEKMKS----EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG- 558 (930)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~gg~~~~~----~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g- 558 (930)
.+.++....+......++.+.-... ...++.+ +.+|+|+|..-|....... .--+++++++|.+|.++..+
T Consensus 144 kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L---~~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 144 RLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL---SKLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh---cccCCCEEEEccHHHHHhccc
Confidence 9999987665222222244432222 2334443 5899999987776555432 22468999999999887433
Q ss_pred ----------cHHH-H------HHHHHHHh---------------------hcCccceEEEEccccCHHH--HHHHhhhc
Q psy15524 559 ----------YERD-I------AEFLEILK---------------------KQKPQFQSILLSATLTPAV--QRLAGMTL 598 (930)
Q Consensus 559 ----------~~~~-l------~~i~~~l~---------------------~~~~~~q~vl~SAT~~~~~--~~l~~~~~ 598 (930)
|.+. + ..+...+. +....-+.+..|||..+.- ..+.+..+
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 3221 1 11111111 0112467899999987642 22333333
Q ss_pred CCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecc---hhhHHHHHH
Q psy15524 599 QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT---QDMADYHTE 675 (930)
Q Consensus 599 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s---~~~~~~~~~ 675 (930)
.- .+... .....++...|...+...+.. .+++.. +...|||++. ++.++.+++
T Consensus 301 gF----evG~~---------~~~LRNIvD~y~~~~~~e~~~---elvk~l--------G~GgLIfV~~d~G~e~aeel~e 356 (1187)
T COG1110 301 GF----EVGSG---------GEGLRNIVDIYVESESLEKVV---ELVKKL--------GDGGLIFVPIDYGREKAEELAE 356 (1187)
T ss_pred CC----ccCcc---------chhhhheeeeeccCccHHHHH---HHHHHh--------CCCeEEEEEcHHhHHHHHHHHH
Confidence 21 11110 011123444444443334433 344332 6789999999 888889999
Q ss_pred HHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec----cccccccCCCC-ccEEEEecCC
Q psy15524 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT----DVAARGLDLPL-VDWIVQYTAP 738 (930)
Q Consensus 676 ~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T----~~~~~GlDip~-v~~VI~~~~p 738 (930)
.|... |+.+..+|+. ..+.++.|..|+.++||.. .++.||+|+|. +..+|.+++|
T Consensus 357 ~Lr~~---Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 357 YLRSH---GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHhc---CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 98875 8888888874 3778999999999999986 47899999995 6788888877
No 181
>KOG0924|consensus
Probab=99.83 E-value=7.4e-19 Score=190.49 Aligned_cols=314 Identities=18% Similarity=0.233 Sum_probs=208.7
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
....+.+.+..+..++-+++.+.||||||....--+++.-+. +...+-+--|.|.-|.-++..+..-++..-
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~--------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA--------DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc--------cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 345566777777777779999999999998633222222111 122344555999999998887766553222
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHHHHhhc
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQ 573 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~~l~~~ 573 (930)
...+++-..-++... ....|=+.|.|-|+.-... .-.+.+.+.||+||||. .... +.+.-+++..-..
T Consensus 429 G~~VGYsIRFEdvT~------~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHE---RslNtDilfGllk~~lar 497 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTS------EDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHE---RSLNTDILFGLLKKVLAR 497 (1042)
T ss_pred ccccceEEEeeecCC------CceeEEEeccchHHHHHhh--hhhhhheeEEEechhhh---cccchHHHHHHHHHHHHh
Confidence 222333322222222 2345779999999775543 34578899999999994 3222 3344444444444
Q ss_pred CccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCC
Q psy15524 574 KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 653 (930)
Q Consensus 574 ~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 653 (930)
+.+.+++..|||+.. +.+...+.+-|.+. +.+.. . ++.-.|...+-++ .....+.+....+.
T Consensus 498 RrdlKliVtSATm~a--~kf~nfFgn~p~f~-IpGRT----------y--PV~~~~~k~p~eD---YVeaavkq~v~Ihl 559 (1042)
T KOG0924|consen 498 RRDLKLIVTSATMDA--QKFSNFFGNCPQFT-IPGRT----------Y--PVEIMYTKTPVED---YVEAAVKQAVQIHL 559 (1042)
T ss_pred hccceEEEeeccccH--HHHHHHhCCCceee-ecCCc----------c--ceEEEeccCchHH---HHHHHHhhheEeec
Confidence 558899999999964 44444433334332 11110 1 1222333333333 33334444444444
Q ss_pred cCCCceEEEEecchhhHHHHHHHHhhhcC-------CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCC
Q psy15524 654 EDEESKMLVFMATQDMADYHTELLSTVLG-------ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDL 726 (930)
Q Consensus 654 ~~~~~k~iVF~~s~~~~~~~~~~l~~~~~-------~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDi 726 (930)
....+.++||....+.++-.+..++..+. .++.++.+++.|++.-+.++++.-..|..+++|||++|+..+.+
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi 639 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI 639 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee
Confidence 45578999999999877766655544321 26889999999999999999999999999999999999999999
Q ss_pred CCccEEEEec------------------CCCChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 727 PLVDWIVQYT------------------APSSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 727 p~v~~VI~~~------------------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
|++.+||..+ .|-|...--||.|||||.| +|.|+-+++.
T Consensus 640 ~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 640 PGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred cceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 9999999755 5567778889999999987 8999998875
No 182
>KOG0352|consensus
Probab=99.83 E-value=1.1e-20 Score=194.34 Aligned_cols=163 Identities=21% Similarity=0.286 Sum_probs=120.6
Q ss_pred CCCccC-cHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQV-TTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l-~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
||+..+ ++.|++|+..+..+ +|+.|++|||+||++||.+|+|-+ +.-+||++|..+|+.+|.+.+.
T Consensus 15 FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiALIkDQiDHL~ 82 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIALIKDQIDHLK 82 (641)
T ss_pred hCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHHHHHHHHHHH
Confidence 466554 89999999998865 689999999999999999999854 2359999999999999999998
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHH------HhcCCCcEEEEChHHHHHHHhcC---CCccCCCccEEEEcccccccccC
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKA------RIRKGISILVATPGRLLDHCKHT---ETLKFSKVEHLVLDEADRILDQG 149 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~------~l~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~l~~vViDE~h~~~~~~ 149 (930)
.+--.. .-+++.-+..+..+ ..+....+++.|||....-.... ....-+.+.|+|||||||+.+||
T Consensus 83 ~LKVp~-----~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWG 157 (641)
T KOG0352|consen 83 RLKVPC-----ESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWG 157 (641)
T ss_pred hcCCch-----hHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhc
Confidence 874322 22333322222222 22334689999999853221110 22234678999999999999998
Q ss_pred --cHHHHHHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 150 --YERDIAEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 150 --~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
|++++..+ ..|+...+++..++||||.++.+
T Consensus 158 HDFRPDYL~L-G~LRS~~~~vpwvALTATA~~~V 190 (641)
T KOG0352|consen 158 HDFRPDYLTL-GSLRSVCPGVPWVALTATANAKV 190 (641)
T ss_pred cccCcchhhh-hhHHhhCCCCceEEeecccChhH
Confidence 89998765 45677778999999999998744
No 183
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.82 E-value=9.5e-19 Score=192.70 Aligned_cols=159 Identities=16% Similarity=0.231 Sum_probs=106.4
Q ss_pred HHHHHHHHhhcCCc--EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC-
Q psy15524 9 VQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT- 85 (930)
Q Consensus 9 ~Q~~ai~~~~~g~~--~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~- 85 (930)
+|.++++++.++.+ ++++||||||||++|++|++.. +.++++++|+++|++|+++++++++..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 59999999998874 8899999999999999998842 23489999999999999999999985432
Q ss_pred --CceeEEeeCCCchH--HH-----------------HH-HhcCCCcEEEEChHHHHHHHhcC----CCc---cCCCccE
Q psy15524 86 --WIVPSWLTGGEKMK--SE-----------------KA-RIRKGISILVATPGRLLDHCKHT----ETL---KFSKVEH 136 (930)
Q Consensus 86 --~~~~~~~~g~~~~~--~~-----------------~~-~l~~~~~Ilv~Tp~~l~~~l~~~----~~~---~l~~l~~ 136 (930)
...+..+.|..... .. .. .....++|+++||+.+..++... ... .+..+++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 23344444431111 00 01 11235889999999997665431 111 1578999
Q ss_pred EEEcccccccccCcHHHH--HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 137 LVLDEADRILDQGYERDI--AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 137 vViDE~h~~~~~~~~~~~--~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
||+||+|.+..++....+ ......++......+++++|||+++
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH
Confidence 999999998765422111 1112222221223688999999864
No 184
>KOG0920|consensus
Probab=99.82 E-value=1.2e-18 Score=202.48 Aligned_cols=330 Identities=21% Similarity=0.235 Sum_probs=225.9
Q ss_pred CHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCC
Q psy15524 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 495 (930)
Q Consensus 416 ~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 495 (930)
...+.+.+.++.+++.+++.+.||+|||...---+++..... +....+++--|.|--|.-+++++..--.....
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~------~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES------GAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc------CCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 345777888888888899999999999997666677766552 24566788889998888888776554433333
Q ss_pred cceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHHHHhhcC
Q psy15524 496 IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQK 574 (930)
Q Consensus 496 ~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~~l~~~~ 574 (930)
..+++-.+..+... ....+++||.|-|+..+.. ...+..+.++|+||+|. .+.. +.+--+++.+-...
T Consensus 249 ~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHE---R~i~~DflLi~lk~lL~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHE---RSINTDFLLILLKDLLPRN 317 (924)
T ss_pred CeeeEEEeeecccC------CceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEE---ccCCcccHHHHHHHHhhhC
Confidence 45565555544333 2367999999999999876 45678999999999994 3322 22233334444445
Q ss_pred ccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcc----------------cCccceecCCCc---eEEEEEcCch
Q psy15524 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIH----------------NTTDSLVIPDSL---KQHFIVTPPK 635 (930)
Q Consensus 575 ~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~ 635 (930)
++.++++||||+.. +..+.++.....+.+.+..-.. ........+..- ........++
T Consensus 318 p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (924)
T KOG0920|consen 318 PDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPE 394 (924)
T ss_pred CCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccc
Confidence 79999999999973 4445555555555443321100 000000000000 0001111222
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc--CC--CceEEEecCCCCHHHHHHHHHHhhcCCC
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL--GE--NIAFFKLHGSMSQSERTEVFKTFRSVKS 711 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~--~~--~~~~~~lhg~~~~~~R~~v~~~F~~~~~ 711 (930)
.....+.+.+...+.. ...+.+|||.+..++...+.+.|.... .. .+.+..+|+.|+..+++.++..--.|..
T Consensus 395 id~~Li~~li~~I~~~---~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDER---EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccC---CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcc
Confidence 3444455555544433 347899999999999999988886421 11 3778899999999999999999999999
Q ss_pred cEEEeccccccccCCCCccEEEEec--------CC----------CChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 712 GVLICTDVAARGLDLPLVDWIVQYT--------AP----------SSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 712 ~vLv~T~~~~~GlDip~v~~VI~~~--------~p----------~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
+|+++|++|+..|.|++|-.||..+ +- -|...-.||.|||||. .+|.|+-+++....
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 9999999999999999999999754 22 2456778999999997 48999999986533
No 185
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=2.3e-18 Score=199.44 Aligned_cols=130 Identities=21% Similarity=0.215 Sum_probs=107.9
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+......|+.++...+..... .++|+||-+.|++..+.++++|... +++...|++.....+...|-++-+.|
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~-----~GrPVLVGT~SVe~SE~lS~~L~~~---gI~H~VLNAK~h~~EAeIVA~AG~~G 677 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSE-----AGRPVLVGTTSVEISELLSRMLKMR---KIPHNVLNAKLHQKEAEIVAEAGQPG 677 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHH-----CCCCEEEEeCcHHHHHHHHHHHHHc---CCcHHHhhccchhhHHHHHHhcCCCC
Confidence 344556777787777776533 2889999999999999999999874 78877888887777777777777777
Q ss_pred CCcEEEeccccccccCCC---Cc-----cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 710 KSGVLICTDVAARGLDLP---LV-----DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip---~v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
. |.|||++|+||.||. .| -+||....+.|..--.|..||+||.|.+|.+.+|++-++.
T Consensus 678 a--VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 678 T--VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred c--EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 6 999999999999995 33 3899999999999999999999999999999999986543
No 186
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.80 E-value=3.8e-18 Score=202.00 Aligned_cols=314 Identities=18% Similarity=0.176 Sum_probs=183.8
Q ss_pred CCHHHHHhHHhhhc----------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 415 VTTVQQLSIQPILD----------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 415 ~~~iQ~~~i~~il~----------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
+++.|..|+..+.. .+..++.++||||||++++..+...+.. ....++|||+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-------cCCCeEEEEECcHHHHHHHHH
Confidence 67889988877642 1458999999999999866555443321 346789999999999999999
Q ss_pred HHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhcc-CCcccccc-eEEEEecchhhhhcCcHH
Q psy15524 485 IFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHT-ETLKFSKV-EHLVLDEADRILDQGYER 561 (930)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~-~~~~~~~l-~~lVlDEah~l~~~g~~~ 561 (930)
.|..+..... .+..+.......+. ....|+|+|..++...+... ..+...+- -+||+||||+.....+.
T Consensus 312 ~f~~~~~~~~-------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~- 383 (667)
T TIGR00348 312 EFQSLQKDCA-------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA- 383 (667)
T ss_pred HHHhhCCCCC-------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH-
Confidence 9988763210 11112222222232 23689999999987543321 11111111 28999999986533322
Q ss_pred HHHHHHHHHhhcCccceEEEEccccCHHH----HHHHhhhcCCCEEEEccCCCCcccCccceecCC-----Cc-------
Q psy15524 562 DIAEFLEILKKQKPQFQSILLSATLTPAV----QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD-----SL------- 625 (930)
Q Consensus 562 ~l~~i~~~l~~~~~~~q~vl~SAT~~~~~----~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~------- 625 (930)
..+...+ ++...++||||+-... ....+....+++. .+.... ...+....|- ..
T Consensus 384 --~~l~~~~----p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~--~Y~~~~--AI~dG~~~~i~Y~~~~~~~~~~~~ 453 (667)
T TIGR00348 384 --KNLKKAL----KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH--RYFITD--AIRDGLTVKIDYEDRLPEDHLDRK 453 (667)
T ss_pred --HHHHhhC----CCCcEEEEeCCCcccccccccccccCCCCCeEE--EeeHHH--HhhcCCeeeEEEEecchhhccChH
Confidence 2222333 3568999999985321 1111110112111 000000 0000000000 00
Q ss_pred ------eEEE-----------------------EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHH
Q psy15524 626 ------KQHF-----------------------IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676 (930)
Q Consensus 626 ------~~~~-----------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~ 676 (930)
...+ .......+....+..+..+..........+++|||.++.+|..+++.
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 454 KLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 0000 00011112223333333332222222258999999999999999998
Q ss_pred HhhhcCCC--ceEEEecCCCCHH---------------------HHHHHHHHhhc-CCCcEEEeccccccccCCCCccEE
Q psy15524 677 LSTVLGEN--IAFFKLHGSMSQS---------------------ERTEVFKTFRS-VKSGVLICTDVAARGLDLPLVDWI 732 (930)
Q Consensus 677 l~~~~~~~--~~~~~lhg~~~~~---------------------~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip~v~~V 732 (930)
|.+..+.. .....++++.... ....+.++|++ +..+|||++|++..|+|.|.++++
T Consensus 534 l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tL 613 (667)
T TIGR00348 534 LDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTL 613 (667)
T ss_pred HHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceE
Confidence 87765432 3344455543322 22468889976 678999999999999999999988
Q ss_pred EEecCCCChhhHHhhhcccccC
Q psy15524 733 VQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 733 I~~~~p~s~~~y~qr~GRagR~ 754 (930)
+..-+-.+ ..++|.+||+.|.
T Consensus 614 yldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 614 YLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEeccccc-cHHHHHHHHhccc
Confidence 87776555 4689999999994
No 187
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.80 E-value=2.4e-18 Score=199.96 Aligned_cols=232 Identities=16% Similarity=0.112 Sum_probs=149.1
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHH---------HHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLA---------YAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~---------~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
..+|+++++.+++|++++++|+||||||.+ |++|.+..+..... ...+.++++++|++|||.|+..++
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~---~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP---NFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc---ccCCcEEEEECcHHHHHHHHHHHH
Confidence 357999999999999999999999999997 44555555432110 123567999999999999999998
Q ss_pred HHHhhh--cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHH
Q psy15524 78 TKLCKS--FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA 155 (930)
Q Consensus 78 ~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~ 155 (930)
.+..+. .....+...+|+... .......+..+|+++|++. ....++++++|||||||.+...+ +.+.
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L--------~l~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL--------TLNKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc--------cccccccCCEEEccccccCccch--hHHH
Confidence 876543 223456677888763 2222223367999999752 11247889999999999886544 1121
Q ss_pred HHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEe
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLS 235 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~s 235 (930)
.++..+ . ...+|+++||
T Consensus 312 ~llk~~-------------------------------------------------------------~--~~~rq~ILmS 328 (675)
T PHA02653 312 AVARKH-------------------------------------------------------------I--DKIRSLFLMT 328 (675)
T ss_pred HHHHHh-------------------------------------------------------------h--hhcCEEEEEc
Confidence 211111 0 0113788888
Q ss_pred cccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcC----------cchhHHHHHHHHhhhccccc
Q psy15524 236 ATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP----------PKLRLVALASFILGKCQNVN 305 (930)
Q Consensus 236 at~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~k~~~l~~~l~~~~~~~~ 305 (930)
||++..++.+ ..++.++..+.+.... ...+.+.|.... ...+. .+...+... .
T Consensus 329 ATl~~dv~~l-~~~~~~p~~I~I~grt-----------~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~L~~~----~ 391 (675)
T PHA02653 329 ATLEDDRDRI-KEFFPNPAFVHIPGGT-----------LFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTALKKY----T 391 (675)
T ss_pred cCCcHhHHHH-HHHhcCCcEEEeCCCc-----------CCCeEEEEeecCcccccchhhhHHHHH-HHHHHHHHh----h
Confidence 8887777666 4567777666553211 123455554321 11122 223333210 1
Q ss_pred cCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 306 EDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 306 ~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
...++.+||||+++.+++.+++.|.+.
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~ 418 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKR 418 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhh
Confidence 224568999999999999999999765
No 188
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.79 E-value=2e-17 Score=176.15 Aligned_cols=165 Identities=27% Similarity=0.357 Sum_probs=128.1
Q ss_pred cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCc-eEEEEEcCchhhHHHHHHHHHhhccCCCc
Q psy15524 576 QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL-KQHFIVTPPKLRLVALASFILGKCQNVNE 654 (930)
Q Consensus 576 ~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 654 (930)
..|++++|||+.+.-...... .+ .+.+..|..+ .....+-|.......|...+......
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~----~v-------------veQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~--- 445 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG----NV-------------VEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAK--- 445 (663)
T ss_pred cCCEEEEECCCChHHHHhccC----ce-------------eEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHhc---
Confidence 469999999997743322110 00 1111222222 22334455566777777777764432
Q ss_pred CCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE
Q psy15524 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734 (930)
Q Consensus 655 ~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~ 734 (930)
+.+++|-+-|+++++.+.++|.+. |+.+..+|++...-+|.+++++.+.|..+|||.-+.+-+|+|+|.|.+|..
T Consensus 446 --~eRvLVTtLTKkmAEdLT~Yl~e~---gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI 520 (663)
T COG0556 446 --NERVLVTTLTKKMAEDLTEYLKEL---GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI 520 (663)
T ss_pred --CCeEEEEeehHHHHHHHHHHHHhc---CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE
Confidence 679999999999999999999986 999999999999999999999999999999999999999999999999998
Q ss_pred ecCC-----CChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 735 YTAP-----SSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 735 ~~~p-----~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
.|.. .|-.+.+|-+|||+|. -.|.++++-..
T Consensus 521 lDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 521 LDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred eecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 8854 4888999999999994 47888877653
No 189
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.79 E-value=6.4e-18 Score=190.03 Aligned_cols=316 Identities=21% Similarity=0.219 Sum_probs=199.0
Q ss_pred CCCCCCHHHHHhHHhhh----cCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 411 NITQVTTVQQLSIQPIL----DGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il----~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
.-..++.+|..||..+. +|++ ++++|.||+|||.+ .+.++.+|.+ .+.-+++|+|+-+++|..|.+..
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r------~~~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIK------SGWVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHh------cchhheeeEEechHHHHHHHHHH
Confidence 44578899999987755 4554 99999999999998 4566666665 24567899999999999999998
Q ss_pred HHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc----CCcccccceEEEEecchhhhhcCcHH
Q psy15524 486 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT----ETLKFSKVEHLVLDEADRILDQGYER 561 (930)
Q Consensus 486 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~----~~~~~~~l~~lVlDEah~l~~~g~~~ 561 (930)
+..+...... ...+.+-.. ...+.|.++|...+....... ..+....+++||+|||||=. ..
T Consensus 235 f~~~~P~~~~--~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~ 300 (875)
T COG4096 235 FEDFLPFGTK--MNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YS 300 (875)
T ss_pred HHHhCCCccc--eeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----Hh
Confidence 8887643221 122222111 114789999999887665543 23445679999999999744 33
Q ss_pred HHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhc-CCCEE--------------------EEccCCCCcccCccc--
Q psy15524 562 DIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTL-QNPIQ--------------------IDAADSTDIHNTTDS-- 618 (930)
Q Consensus 562 ~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~-~~~~~--------------------i~~~~~~~~~~~~~~-- 618 (930)
....|+..+.. -+++++||+.+.+..-.-.++ .+|+. +.+............
T Consensus 301 ~~~~I~dYFdA-----~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~se 375 (875)
T COG4096 301 EWSSILDYFDA-----ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSE 375 (875)
T ss_pred hhHHHHHHHHH-----HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccch
Confidence 34466666643 224459998763322111122 22222 111111000000000
Q ss_pred --eecCCCc---eEEEEEcC------chhhHHHHHHHHHhhccCC-CcCCCceEEEEecchhhHHHHHHHHhhhcCC--C
Q psy15524 619 --LVIPDSL---KQHFIVTP------PKLRLVALASFILGKCQNV-NEDEESKMLVFMATQDMADYHTELLSTVLGE--N 684 (930)
Q Consensus 619 --~~~~~~~---~~~~~~~~------~~~~~~~l~~~l~~~~~~~-~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~--~ 684 (930)
-...+.+ .+.|...+ -..........+..++... ....-+|+||||.+.++++++.+.|....++ +
T Consensus 376 rek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~ 455 (875)
T COG4096 376 REKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNG 455 (875)
T ss_pred hhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccC
Confidence 0000000 11111111 1123334444555554432 1122579999999999999999999887654 3
Q ss_pred ceEEEecCCCCHHHHHHHHHHhhc--CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 685 IAFFKLHGSMSQSERTEVFKTFRS--VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 685 ~~~~~lhg~~~~~~R~~v~~~F~~--~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
--+..+.|+-.+. ...++.|.. .--+|.++.+++..|+|+|.|..+|.+-.-.|...|.||+||+-|.
T Consensus 456 ~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 456 RYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3456677775443 445566654 2346899999999999999999999999999999999999999996
No 190
>KOG0351|consensus
Probab=99.79 E-value=8.4e-19 Score=207.53 Aligned_cols=162 Identities=22% Similarity=0.272 Sum_probs=125.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
||...++|-|.+||..++.|+|++|.+|||+||++||.+|++-. ++.+|||+|.++|+++|...+...
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~DQv~~L~~~ 327 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQDQVTHLSKK 327 (941)
T ss_pred hccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHHHHHHhhhhc
Confidence 58889999999999999999999999999999999999998732 346999999999999999888444
Q ss_pred hhhcCCceeEEeeCCCchHHH---HHHhcC---CCcEEEEChHHHHHHHhcC-CCccCCC---ccEEEEcccccccccC-
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSE---KARIRK---GISILVATPGRLLDHCKHT-ETLKFSK---VEHLVLDEADRILDQG- 149 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~---~~~l~~---~~~Ilv~Tp~~l~~~l~~~-~~~~l~~---l~~vViDE~h~~~~~~- 149 (930)
. +....+.++.....+ .+.+.. .++|++.|||.+...-.-. ....+.. +.++|||||||+.+||
T Consensus 328 ~-----I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 328 G-----IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred C-----cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 3 556667777665433 233333 3799999999986432211 1222444 8999999999999998
Q ss_pred -cHHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 150 -YERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 150 -~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
|++++.++-......+ .+.+|+||||.+..
T Consensus 403 dFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~ 433 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFP-GVPFIALTATATER 433 (941)
T ss_pred cccHHHHHHHHHHhhCC-CCCeEEeehhccHH
Confidence 9999988766555444 48999999999753
No 191
>KOG0926|consensus
Probab=99.78 E-value=7.6e-18 Score=185.85 Aligned_cols=311 Identities=21% Similarity=0.242 Sum_probs=200.3
Q ss_pred HhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEE
Q psy15524 421 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500 (930)
Q Consensus 421 ~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 500 (930)
+.+.+|..+--+|||+.||||||...--.+++.-..... ..++..+=|--|.|--|.-++++...-+..++.- +++
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~---~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~e-VsY 338 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ---SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSE-VSY 338 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc---CCCCCeeeecCchHHHHHHHHHHHHHHhccCccc-eeE
Confidence 344455445558999999999998532223332222110 1122334455699988888877665544433322 222
Q ss_pred E--eCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-----HHHHHHHHHHhhc
Q psy15524 501 L--TGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-----RDIAEFLEILKKQ 573 (930)
Q Consensus 501 ~--~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-----~~l~~i~~~l~~~ 573 (930)
. +.|+ +.....|-++|.|-|+.-+.+ .+.+...+.||+||||. .... ..+.+|+..-.+.
T Consensus 339 qIRfd~t--------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHE---RSvnTDILiGmLSRiV~LR~k~ 405 (1172)
T KOG0926|consen 339 QIRFDGT--------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHE---RSVNTDILIGMLSRIVPLRQKY 405 (1172)
T ss_pred EEEeccc--------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhh---ccchHHHHHHHHHHHHHHHHHH
Confidence 2 2222 123568999999999988775 57789999999999994 2211 2334444433333
Q ss_pred Cc------cceEEEEccccCHHHHHHHh--hhcC-CCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHH
Q psy15524 574 KP------QFQSILLSATLTPAVQRLAG--MTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644 (930)
Q Consensus 574 ~~------~~q~vl~SAT~~~~~~~l~~--~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (930)
.. ..+.+.||||+. +.++.. ..+. -|..|.+... ..| +.-++ ........+.+.
T Consensus 406 ~ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdAR----------QfP--VsIHF---~krT~~DYi~eA 468 (1172)
T KOG0926|consen 406 YKEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDAR----------QFP--VSIHF---NKRTPDDYIAEA 468 (1172)
T ss_pred hhhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecc----------cCc--eEEEe---ccCCCchHHHHH
Confidence 22 578899999984 222221 1111 1112222111 011 11111 122223455556
Q ss_pred HHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC-----------------------------------------
Q psy15524 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE----------------------------------------- 683 (930)
Q Consensus 645 l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~----------------------------------------- 683 (930)
.+..|..+..-+.+.+|||+....+++++++.|++.++.
T Consensus 469 frKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~ 548 (1172)
T KOG0926|consen 469 FRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYES 548 (1172)
T ss_pred HHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccc
Confidence 666666666666889999999999999999988776321
Q ss_pred -------------------------------------------------------CceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 684 -------------------------------------------------------NIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 684 -------------------------------------------------------~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..-+..|++-++.+++.++++.--.
T Consensus 549 ~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~ 628 (1172)
T KOG0926|consen 549 DEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPK 628 (1172)
T ss_pred hhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCC
Confidence 2346778888999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCC------------------CChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAP------------------SSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p------------------~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
|..-++|+|++|+..+.||+|..||..+.- .|...--||+|||||.| +|.|+-+++.
T Consensus 629 g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 629 GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 999999999999999999999999986522 14455579999999998 8999988873
No 192
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.78 E-value=4.4e-18 Score=196.24 Aligned_cols=149 Identities=17% Similarity=0.128 Sum_probs=109.4
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
..|+++|++|++.++.+.+.++++|||+|||+++...+...+.. ...++|||+||++|+.|+.+++++++..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 47999999999999999999999999999999875533222221 1336999999999999999999987643
Q ss_pred cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 84 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
.. .....+.+|.... ...+|+|+||+++.+... ..++++++||+||||++.... +..++..++.
T Consensus 185 ~~-~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~ 248 (501)
T PHA02558 185 PR-EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKS----LTSIITKLDN 248 (501)
T ss_pred cc-cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchh----HHHHHHhhhc
Confidence 22 2333344443321 347899999999876432 136789999999999997644 3455544432
Q ss_pred cCCCceEEEEEeecCC
Q psy15524 164 QKPQFQSILLSATLTP 179 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~ 179 (930)
..+++|||||+.+
T Consensus 249 ---~~~~lGLTATp~~ 261 (501)
T PHA02558 249 ---CKFKFGLTGSLRD 261 (501)
T ss_pred ---cceEEEEeccCCC
Confidence 3479999999964
No 193
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.78 E-value=3.3e-18 Score=190.80 Aligned_cols=143 Identities=22% Similarity=0.196 Sum_probs=96.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch---
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM--- 98 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~--- 98 (930)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++++..++.. ....+.++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHH
Confidence 58999999999999999999987643 23457999999999999999999998642 12222222110
Q ss_pred ---------HHHHHHh-c-----CCCcEEEEChHHHHHHHhcC-C--CccCC--CccEEEEcccccccccCcHHHHHHHH
Q psy15524 99 ---------KSEKARI-R-----KGISILVATPGRLLDHCKHT-E--TLKFS--KVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 99 ---------~~~~~~l-~-----~~~~Ilv~Tp~~l~~~l~~~-~--~~~l~--~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
....... . ...+|+++||++++..+... . ...+. ..++|||||+|.+.+++++. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 0111111 1 13679999999998876641 1 11111 23799999999999876554 55555
Q ss_pred HHHhhcCCCceEEEEEeecC
Q psy15524 159 EILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~ 178 (930)
..++ ..++|++++|||++
T Consensus 149 ~~l~--~~~~~~i~~SATlp 166 (358)
T TIGR01587 149 EVLK--DNDVPILLMSATLP 166 (358)
T ss_pred HHHH--HcCCCEEEEecCch
Confidence 5554 23456777777764
No 194
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.77 E-value=2.5e-16 Score=185.81 Aligned_cols=124 Identities=27% Similarity=0.360 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEE
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vL 714 (930)
..++..+...+..... .+.++||||+|.+.++.+++.|... |+.+..+||++++.+|..+++.|+.|...||
T Consensus 429 ~~q~~~L~~~L~~~~~-----~g~~viIf~~t~~~ae~L~~~L~~~---gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vl 500 (652)
T PRK05298 429 KGQVDDLLSEIRKRVA-----KGERVLVTTLTKRMAEDLTDYLKEL---GIKVRYLHSDIDTLERVEIIRDLRLGEFDVL 500 (652)
T ss_pred cccHHHHHHHHHHHHh-----CCCEEEEEeCCHHHHHHHHHHHhhc---ceeEEEEECCCCHHHHHHHHHHHHcCCceEE
Confidence 3456666666665432 2679999999999999999999875 8889999999999999999999999999999
Q ss_pred EeccccccccCCCCccEEEEecC-----CCChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 715 ICTDVAARGLDLPLVDWIVQYTA-----PSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 715 v~T~~~~~GlDip~v~~VI~~~~-----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
|||+++++|+|+|++++||++|. |.+...|+||+|||||. ..|.+++|+...
T Consensus 501 V~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 501 VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred EEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 99999999999999999999885 78999999999999996 789999999853
No 195
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.76 E-value=4.7e-17 Score=165.56 Aligned_cols=187 Identities=35% Similarity=0.561 Sum_probs=149.3
Q ss_pred cCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
.+++..++++|.++++.++.+ +.+++.++||+|||.++..++++.+.. ....+++|++|+++++.|+.+.+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~-------~~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR-------GKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc-------cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 357889999999999999998 999999999999999999999988764 224679999999999999999998
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCC-cEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGI-SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~-~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
..+..... ......++............+. +++++|++.+.+.+.... .....++++|+||+|.+....+...+..+
T Consensus 76 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLGL-KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCCe-EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 88754321 2334455555455555555565 999999999998887633 45678999999999999875677777777
Q ss_pred HHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 567 LEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
+..+ .+..+++++|||+++.........+.+...+...
T Consensus 154 ~~~~---~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 154 LKLL---PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HHhC---CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 7666 3478899999999998888888888777766654
No 196
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.76 E-value=4.4e-18 Score=199.86 Aligned_cols=166 Identities=22% Similarity=0.241 Sum_probs=139.8
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|| +|-++|++|+-.+..|.+++|+||||+|||++...++...+.. +.+++|.+|.+||.+|.++.+...+
T Consensus 117 ~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 117 PF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHHHHh
Confidence 56 5899999999999999999999999999999988888777654 4559999999999999999998887
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
... .-.+++++|+.... .++.++|.|.|.|.+++.+ +...+..+.+||+||+|.|.|..++..++.++-.+
T Consensus 187 gdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 187 GDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhh-hhhccceecceeeC-------CCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 643 24467777776543 4578999999999999987 56678999999999999999999999998888777
Q ss_pred hhcCCCceEEEEEeecCCCccccccccc
Q psy15524 162 KKQKPQFQSILLSATLTPATCWCKHTET 189 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~ 189 (930)
+. ++++++||||.++...+..|...
T Consensus 258 P~---~v~~v~LSATv~N~~EF~~Wi~~ 282 (1041)
T COG4581 258 PD---HVRFVFLSATVPNAEEFAEWIQR 282 (1041)
T ss_pred CC---CCcEEEEeCCCCCHHHHHHHHHh
Confidence 54 45899999999998766655443
No 197
>KOG0353|consensus
Probab=99.76 E-value=1e-17 Score=169.84 Aligned_cols=160 Identities=23% Similarity=0.336 Sum_probs=121.5
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
..+.++|.|..+|.+.++|++++++.|||.||++||.+|++-. .+.+||++|.+.|+.++.-.++.++
T Consensus 91 ~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~alvi~plislmedqil~lkqlg 158 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFALVICPLISLMEDQILQLKQLG 158 (695)
T ss_pred hHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceEeechhHHHHHHHHHHHHHhC
Confidence 3567899999999999999999999999999999999999732 3449999999999999999999887
Q ss_pred hhcCCceeEEeeCCCchHHH---HHHhc---CCCcEEEEChHHHHHH---Hhc-CCCccCCCccEEEEcccccccccC--
Q psy15524 82 KSFTWIVPSWLTGGEKMKSE---KARIR---KGISILVATPGRLLDH---CKH-TETLKFSKVEHLVLDEADRILDQG-- 149 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~---~~~l~---~~~~Ilv~Tp~~l~~~---l~~-~~~~~l~~l~~vViDE~h~~~~~~-- 149 (930)
... ..+....+.++. ...+. ....+++.|||.+... +.. ...+....+.++-|||+||-.+||
T Consensus 159 i~a-----s~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghd 233 (695)
T KOG0353|consen 159 IDA-----SMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHD 233 (695)
T ss_pred cch-----hhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcc
Confidence 432 223333322221 11222 2368999999998532 111 133446788999999999999998
Q ss_pred cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 150 YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 150 ~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
|++++.. +..|+..-+.+.+||||||..+
T Consensus 234 fr~dy~~-l~ilkrqf~~~~iigltatatn 262 (695)
T KOG0353|consen 234 FRPDYKA-LGILKRQFKGAPIIGLTATATN 262 (695)
T ss_pred cCcchHH-HHHHHHhCCCCceeeeehhhhc
Confidence 8888654 4566667778899999999875
No 198
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=4.3e-17 Score=186.24 Aligned_cols=301 Identities=19% Similarity=0.208 Sum_probs=189.5
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|+|+|..+++.++.|+ |+.+.||+|||++|.+|++..... |.+++|++||++||.|.++.+..++
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 55 58999999999999998 999999999999999999987643 6679999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC------------------------CCccCCCccE
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT------------------------ETLKFSKVEH 136 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------------------------~~~~l~~l~~ 136 (930)
..++ +.+.+++|+.+.. ......++||+|||...+ .+.++.. .....+.+.+
T Consensus 169 ~~lG-lsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 169 EALG-LTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred hhcC-CEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 8776 7888899887543 344456799999999887 3444321 0112467899
Q ss_pred EEEccccccc-ccCcH-----------------HHHHHHHHHHhhcC-----CCceEEEEEeecCC---------Ccccc
Q psy15524 137 LVLDEADRIL-DQGYE-----------------RDIAEFLEILKKQK-----PQFQSILLSATLTP---------ATCWC 184 (930)
Q Consensus 137 vViDE~h~~~-~~~~~-----------------~~~~~i~~~l~~~~-----~~~~~i~lSAT~~~---------~~~~~ 184 (930)
.||||+|.++ |...- .....+...+.... +.-+.+.+|..-.. ...|.
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 9999999764 43211 11222233332210 12344545422110 01111
Q ss_pred ccc------------cccccccccchhhhhhhhhh---------hccchhhHHHHHHHHhhc---Cc-------------
Q psy15524 185 KHT------------ETLKFSKVEHLVLDEADRIL---------DQGYERDIAEFLEILKKQ---KP------------- 227 (930)
Q Consensus 185 ~~~------------~~~~~~~~~~~~~de~~~~~---------~~~~~~~~~~~~~~~~~~---~~------------- 227 (930)
... ..+...++.++|.|+.-.++ +..+...+...++.-... +.
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence 000 00111122233322211111 112222233222221110 00
Q ss_pred --CceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccc
Q psy15524 228 --QFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 305 (930)
Q Consensus 228 --~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 305 (930)
.....-||+|.......+...|.-+++.|...... .....+.++.++..+|..+|...+.. .
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~-----------~r~~~~~~v~~t~~~K~~aL~~~i~~-----~ 469 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS-----------QRRHLPDEVFLTAAAKWAAVAARVRE-----L 469 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc-----------cceecCCEEEeCHHHHHHHHHHHHHH-----H
Confidence 01455678899888888888887787777554433 12234445667778899999998854 1
Q ss_pred cCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 306 EDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 306 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
...+.++||||+|++.++.++..|...|
T Consensus 470 ~~~~~pvLIft~t~~~se~L~~~L~~~g 497 (656)
T PRK12898 470 HAQGRPVLVGTRSVAASERLSALLREAG 497 (656)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 2345789999999999999999998765
No 199
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.75 E-value=9.4e-16 Score=184.63 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy15524 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717 (930)
Q Consensus 638 ~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T 717 (930)
...+...+..... .+++++|+++|.+..+.+++.|... ...+ ...|... .|..+.++|++++..||++|
T Consensus 633 ~~~~~~~i~~~~~-----~~g~~LVLFtS~~~l~~v~~~l~~~---~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 633 AEEIAKRLEELKQ-----LQQPILVLFNSKKHLLAVSDLLDQW---QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred HHHHHHHHHHHHh-----cCCCEEEEECcHHHHHHHHHHHhhc---CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 3455555544331 2689999999999999999888753 2334 3344221 25668999999888999999
Q ss_pred cccccccCCCC--ccEEEEecCCC----C--------------------------hhhHHhhhcccccCCCCceEEEEeC
Q psy15524 718 DVAARGLDLPL--VDWIVQYTAPS----S--------------------------STDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 718 ~~~~~GlDip~--v~~VI~~~~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
+.+.+|+|+|+ ...||....|. + ...+.|-+||.-|...+-..++++.
T Consensus 702 ~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 702 GSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred chhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 99999999974 44555555442 2 2246799999999876544555555
Q ss_pred cc--cHHHHHHHHhc---CCccchhchHHHH
Q psy15524 766 PS--EVKLVEELQNR---RIRIEEIKLKDCL 791 (930)
Q Consensus 766 ~~--e~~~~~~l~~~---~~~~~~~~~~~~~ 791 (930)
++ ...|-+.+.+. ++++.+..++++.
T Consensus 782 ~R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~ 812 (820)
T PRK07246 782 RRILTKSYGKQILASLAEEFLISQQNFSDVL 812 (820)
T ss_pred CcccccHHHHHHHHhCCCCCccccCCHHHHH
Confidence 54 22344444332 2344445544443
No 200
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.75 E-value=6.9e-17 Score=192.55 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=103.4
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCcee
Q psy15524 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVP 89 (930)
Q Consensus 10 Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 89 (930)
-.+.+..+.++.+++++|+||||||.+|.+++++... .+.+++|+.|++++|.|+++++.+.........+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 3455666778889999999999999999999997752 2457999999999999999998654432222344
Q ss_pred EEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccc-cccccCcHHHH-HHHHHHHhhcCCC
Q psy15524 90 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERDI-AEFLEILKKQKPQ 167 (930)
Q Consensus 90 ~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h-~~~~~~~~~~~-~~i~~~l~~~~~~ 167 (930)
+...++.. ....+.+|+|+||++|++.+.+ ...++++++|||||+| ++++..+.-.+ ..+.. ..+++
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~---~lr~d 146 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQS---SLRED 146 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHH---hcCCC
Confidence 44444332 2234578999999999998875 3468999999999999 46665543222 11211 12334
Q ss_pred ceEEEEEeecC
Q psy15524 168 FQSILLSATLT 178 (930)
Q Consensus 168 ~~~i~lSAT~~ 178 (930)
.|+++||||++
T Consensus 147 lqlIlmSATl~ 157 (819)
T TIGR01970 147 LKILAMSATLD 157 (819)
T ss_pred ceEEEEeCCCC
Confidence 45555555553
No 201
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.74 E-value=5.8e-17 Score=193.72 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=90.2
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCcee
Q psy15524 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVP 89 (930)
Q Consensus 10 Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 89 (930)
=.+.+.++.++++++++||||||||.+|.+++++... ..++++|+.|++++|.|+++++.+.........+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 3455666778899999999999999999999986531 1347999999999999999998655433222455
Q ss_pred EEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc
Q psy15524 90 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR 144 (930)
Q Consensus 90 ~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~ 144 (930)
+...++.... ....+|+|+||++|++++.. ...++++++|||||+|.
T Consensus 81 Gy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHE 127 (812)
T PRK11664 81 GYRMRAESKV------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHE 127 (812)
T ss_pred EEEecCcccc------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCc
Confidence 5555554321 23468999999999998874 34689999999999996
No 202
>KOG4150|consensus
Probab=99.74 E-value=5.6e-17 Score=172.42 Aligned_cols=348 Identities=11% Similarity=0.060 Sum_probs=233.8
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
++...+.+.+.-+....+|..+|..+-+|+++++.-.|.+||.++|.+.....+.. ......+++.||.++++
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~ 345 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLR 345 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhh
Confidence 33444445677778899999999999999999999999999999999988876654 34556899999999998
Q ss_pred HHHHHHHHhhccCCCcce--EEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhh-ccCCc--ccccceEEEEecchhhh
Q psy15524 481 QTLEIFTKLCKSFTWIVP--SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK-HTETL--KFSKVEHLVLDEADRIL 555 (930)
Q Consensus 481 Q~~~~~~~~~~~~~~~~~--~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~-~~~~~--~~~~l~~lVlDEah~l~ 555 (930)
...+.+.-.....+.... .-.+.|.....+.+-.+.+.+++++.|........ +...+ .+=...+++.||+|.++
T Consensus 346 ~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~ 425 (1034)
T KOG4150|consen 346 NGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYL 425 (1034)
T ss_pred ccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeee
Confidence 765543322222221111 22344555555666678899999999987644322 21111 13345678999999765
Q ss_pred hcCcHHHHHHHHHHHhh------cCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 556 DQGYERDIAEFLEILKK------QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~------~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
.. |.......++.|.. ...+.|++-.|||+.+.++-......-+.+.+...+.+ |..-+..+
T Consensus 426 ~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS-----------Ps~~K~~V 493 (1034)
T KOG4150|consen 426 FP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS-----------PSSEKLFV 493 (1034)
T ss_pred cc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC-----------CCccceEE
Confidence 32 34333333333322 23477899999999887766555444444332222111 12222222
Q ss_pred EEcCc---------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC---C--ceEEEecCCCC
Q psy15524 630 IVTPP---------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE---N--IAFFKLHGSMS 695 (930)
Q Consensus 630 ~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~---~--~~~~~lhg~~~ 695 (930)
+..|+ ..+......++.+.... +-++|.||.+++.|+.+-....+.+.+ . -.+..+.|+-+
T Consensus 494 ~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~-----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~ 568 (1034)
T KOG4150|consen 494 LWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH-----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYI 568 (1034)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHHHHHHc-----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccc
Confidence 22221 11222222222222211 679999999999998776555544322 1 13556789999
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeC--cccHHHH
Q psy15524 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLI--PSEVKLV 772 (930)
Q Consensus 696 ~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~--~~e~~~~ 772 (930)
.++|+.++...-.|+..-+++|++++-|+|+.+.+.|++.+.|.|...+.|..|||||.+++..++.+.. |-+..|+
T Consensus 569 A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 569 AEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred hhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999887766554 4455444
No 203
>KOG1123|consensus
Probab=99.73 E-value=2.5e-17 Score=173.02 Aligned_cols=332 Identities=18% Similarity=0.214 Sum_probs=209.4
Q ss_pred CCccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC---CcEEEEccCCCchhHHhhHHHHHHHHhh
Q psy15524 381 PVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG---GDVLVRSQTGSGKTLAYAIPIIQKLQEM 457 (930)
Q Consensus 381 ~~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~---~d~lv~a~TGsGKTl~~~lp~l~~l~~~ 457 (930)
+.+-|++++-.|..- .++|++--.|+ .-..++|+|++++..+..+ +.-++..|.|+|||++.+-++..
T Consensus 273 eidyPlLeEYDFRND-~~npdl~idLK---Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t----- 343 (776)
T KOG1123|consen 273 EIDYPLLEEYDFRND-NVNPDLDIDLK---PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT----- 343 (776)
T ss_pred ccCchhhhhhccccC-CCCCCCCcCcC---cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-----
Confidence 344456666666654 44444332332 4467999999999998853 56899999999999986555441
Q ss_pred CcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc--
Q psy15524 458 RPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-- 535 (930)
Q Consensus 458 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-- 535 (930)
-.+++||++.+---+.||...|..+..--+ ...+.++.+.+ .+...++.|+|+|...+..--.+.
T Consensus 344 -------ikK~clvLcts~VSVeQWkqQfk~wsti~d-~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~e 410 (776)
T KOG1123|consen 344 -------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQD-DQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHE 410 (776)
T ss_pred -------ecccEEEEecCccCHHHHHHHHHhhcccCc-cceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHH
Confidence 245699999999999999999887764322 22333443322 233467899999986552211110
Q ss_pred -----CCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhh-hcCCCEEEEcc--
Q psy15524 536 -----ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGM-TLQNPIQIDAA-- 607 (930)
Q Consensus 536 -----~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~-~~~~~~~i~~~-- 607 (930)
..+.-+.+.++|+||+|.+...-|.+.+.-+-.+.+ ++++||+-.+-..+... ++-.|......
T Consensus 411 aek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcK--------LGLTATLvREDdKI~DLNFLIGPKlYEAnWm 482 (776)
T KOG1123|consen 411 AEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCK--------LGLTATLVREDDKITDLNFLIGPKLYEANWM 482 (776)
T ss_pred HHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhh--------ccceeEEeeccccccccceeecchhhhccHH
Confidence 011235688999999999988878777766655543 78999975321111110 01111111000
Q ss_pred ---CCC--------------CcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhH
Q psy15524 608 ---DST--------------DIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA 670 (930)
Q Consensus 608 ---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~ 670 (930)
... ......+.+.. ..-+.....+-...|+.+..-+++.+-. .+.|+|||..+.-..
T Consensus 483 dL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~-~t~kr~lLyvMNP~KFraCqfLI~~HE~-----RgDKiIVFsDnvfAL 556 (776)
T KOG1123|consen 483 DLQKKGHIAKVQCAEVWCPMTPEFYREYLRE-NTRKRMLLYVMNPNKFRACQFLIKFHER-----RGDKIIVFSDNVFAL 556 (776)
T ss_pred HHHhCCceeEEeeeeeecCCCHHHHHHHHhh-hhhhhheeeecCcchhHHHHHHHHHHHh-----cCCeEEEEeccHHHH
Confidence 000 00000000000 1111122233344555555444443322 378999999888777
Q ss_pred HHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccCCCCccEEEEecCC-CChhhHHhhh
Q psy15524 671 DYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLDLPLVDWIVQYTAP-SSSTDYVHRV 748 (930)
Q Consensus 671 ~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip~v~~VI~~~~p-~s~~~y~qr~ 748 (930)
..++-.|.+ ++ +.|..+|.+|..+++.|+- ..++-++-+.+....+|+|..+++||.... .|..+--||.
T Consensus 557 k~YAikl~K------pf--IYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRL 628 (776)
T KOG1123|consen 557 KEYAIKLGK------PF--IYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRL 628 (776)
T ss_pred HHHHHHcCC------ce--EECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHH
Confidence 666655543 33 3899999999999999994 567889999999999999999999998755 4788999999
Q ss_pred cccccCCC
Q psy15524 749 GRTARVGH 756 (930)
Q Consensus 749 GRagR~g~ 756 (930)
||.-|+.+
T Consensus 629 GRILRAKk 636 (776)
T KOG1123|consen 629 GRILRAKK 636 (776)
T ss_pred HHHHHHhh
Confidence 99998754
No 204
>KOG0349|consensus
Probab=99.73 E-value=7.9e-18 Score=173.50 Aligned_cols=121 Identities=33% Similarity=0.450 Sum_probs=102.4
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhhhcC--CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCcc
Q psy15524 58 IYAVIILPTRELALQTLEIFTKLCKSFT--WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVE 135 (930)
Q Consensus 58 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~ 135 (930)
++++|+-|.+||+.|.++.++++--+.. .++.-++.||.....+...+..+.+|+|+||+|+.+.+.. +.+.+.+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 5589999999999999997777754443 2344478899999999999999999999999999999875 788899999
Q ss_pred EEEEcccccccccCcHHHHHHHHHHHhhcCC---CceEEEEEeecCC
Q psy15524 136 HLVLDEADRILDQGYERDIAEFLEILKKQKP---QFQSILLSATLTP 179 (930)
Q Consensus 136 ~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~---~~~~i~lSAT~~~ 179 (930)
++|+||+|.++..++.+-|.++...++...+ .+|.+.-|||+..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~ 412 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHI 412 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeE
Confidence 9999999999999999999999888887654 4788888888753
No 205
>KOG0354|consensus
Probab=99.72 E-value=3e-17 Score=185.45 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=125.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+++|.+.+..++ |+|+||++|||+|||+++...+++++.. .+.+++|+++|++-|+.|+...+...+..
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw-------~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW-------RPKGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc-------CCcceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 58999999999999 9999999999999999999999999864 34578999999999999999777766543
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHH-HHHHHHhh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA-EFLEILKK 163 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~-~i~~~l~~ 163 (930)
-.+....||.........+....+|+|+||+.+.+.+.+...-.++.+.++||||||+-....-...+. ..+.. +.
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~-k~ 209 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDL-KN 209 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHh-hh
Confidence 334445556554445556777899999999999998877444447899999999999987765433333 33322 22
Q ss_pred cCCCceEEEEEeecCC
Q psy15524 164 QKPQFQSILLSATLTP 179 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~ 179 (930)
. ..|+|||||||+.
T Consensus 210 ~--~~qILgLTASpG~ 223 (746)
T KOG0354|consen 210 Q--GNQILGLTASPGS 223 (746)
T ss_pred c--cccEEEEecCCCc
Confidence 2 2399999999984
No 206
>KOG0385|consensus
Probab=99.72 E-value=1.4e-15 Score=168.01 Aligned_cols=328 Identities=17% Similarity=0.262 Sum_probs=212.2
Q ss_pred CCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..|+++|.+.++.+. +|-+.|+.-..|-|||+. .|..+..+...+ ..+|+ -||++|.-.|. .|..++++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~----~~~GP-fLVi~P~StL~-NW~~Ef~r 238 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK----GIPGP-FLVIAPKSTLD-NWMNEFKR 238 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc----CCCCC-eEEEeeHhhHH-HHHHHHHH
Confidence 478999999887766 467899999999999997 556666655421 12344 68999976664 57888888
Q ss_pred hhccCCCcceEEEeCCCchHHHHHH-H--hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKAR-I--RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~-~--~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~ 565 (930)
+. +.+.+.++.|.........+ + ....+|+|+|.+..+.-- ..+.--+++++|||||||+-+.. ..+..
T Consensus 239 f~---P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~~--s~L~~ 310 (971)
T KOG0385|consen 239 FT---PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNEK--SKLSK 310 (971)
T ss_pred hC---CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcchh--hHHHH
Confidence 76 44556667777543332221 1 235799999998775431 12233457899999999996553 34455
Q ss_pred HHHHHhhcCccceEEEEccccCHH----------------------HHHHHhh---------------------------
Q psy15524 566 FLEILKKQKPQFQSILLSATLTPA----------------------VQRLAGM--------------------------- 596 (930)
Q Consensus 566 i~~~l~~~~~~~q~vl~SAT~~~~----------------------~~~l~~~--------------------------- 596 (930)
+++.+. ....+++|.|+-.. ...|...
T Consensus 311 ~lr~f~----~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~ 386 (971)
T KOG0385|consen 311 ILREFK----TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKS 386 (971)
T ss_pred HHHHhc----ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHH
Confidence 555554 23457888885311 0011000
Q ss_pred ----hcCCCEEEEccCC--------------CCcccC---------------------ccce-----ecC-CCceEEEEE
Q psy15524 597 ----TLQNPIQIDAADS--------------TDIHNT---------------------TDSL-----VIP-DSLKQHFIV 631 (930)
Q Consensus 597 ----~~~~~~~i~~~~~--------------~~~~~~---------------------~~~~-----~~~-~~~~~~~~~ 631 (930)
.+.....+.+... .+.... ++.+ +-| ......-.+
T Consensus 387 dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL 466 (971)
T KOG0385|consen 387 DVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL 466 (971)
T ss_pred hHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH
Confidence 0000000100000 000000 0000 111 111111123
Q ss_pred cCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC
Q psy15524 632 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711 (930)
Q Consensus 632 ~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~ 711 (930)
+....|+..|-.+|..... .+.++|||..-....+.+..+..- +++.++.+.|.++.++|...++.|.....
T Consensus 467 v~nSGKm~vLDkLL~~Lk~-----~GhRVLIFSQmt~mLDILeDyc~~---R~y~ycRiDGSt~~eeR~~aI~~fn~~~s 538 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKE-----QGHRVLIFSQMTRMLDILEDYCML---RGYEYCRLDGSTSHEEREDAIEAFNAPPS 538 (971)
T ss_pred HhcCcceehHHHHHHHHHh-----CCCeEEEeHHHHHHHHHHHHHHHh---cCceeEeecCCCCcHHHHHHHHhcCCCCc
Confidence 3344566666666554332 288999999988888877776654 48999999999999999999999986553
Q ss_pred ---cEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE--EeCcc
Q psy15524 712 ---GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL--FLIPS 767 (930)
Q Consensus 712 ---~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~--~~~~~ 767 (930)
-.|++|.+.+-|||+...++||.||..++|..-+|..-||.|.|+...+.+ +++.+
T Consensus 539 ~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 539 EKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 368999999999999999999999999999999999999999999765554 45543
No 207
>PRK13766 Hef nuclease; Provisional
Probab=99.72 E-value=2.2e-16 Score=193.71 Aligned_cols=161 Identities=24% Similarity=0.240 Sum_probs=125.9
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
-+++++|++++..++.+ |+|+++|||+|||.++++++...+.. .+.++|||+||++|+.|+.+.+++++..
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 36899999999988887 99999999999999999999887732 3457999999999999999999987642
Q ss_pred cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 84 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
. ...+..++|+.... ....+...++|+|+||+.+...+.. +.+.+.++++|||||||++...... ..+......
T Consensus 85 ~-~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~---~~i~~~~~~ 158 (773)
T PRK13766 85 P-EEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAY---VYIAERYHE 158 (773)
T ss_pred C-CceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccH---HHHHHHHHh
Confidence 2 23556666766544 3445566789999999999877654 5667889999999999998754322 234444555
Q ss_pred cCCCceEEEEEeecCC
Q psy15524 164 QKPQFQSILLSATLTP 179 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~ 179 (930)
....+.+++|||||..
T Consensus 159 ~~~~~~il~lTaTP~~ 174 (773)
T PRK13766 159 DAKNPLVLGLTASPGS 174 (773)
T ss_pred cCCCCEEEEEEcCCCC
Confidence 5567789999999854
No 208
>KOG0947|consensus
Probab=99.72 E-value=6.1e-17 Score=182.28 Aligned_cols=165 Identities=23% Similarity=0.231 Sum_probs=135.5
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
+| .|-++|++||-++..|.+++|.|+|.+|||+++-.++.-.- ..+.+++|-+|.++|.+|.++.|++.+
T Consensus 295 pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---------~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 295 PF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---------hhccceEecchhhhhccchHHHHHHhc
Confidence 45 48899999999999999999999999999999766554322 235679999999999999999999987
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l 161 (930)
..- +.++|+.... ..+.++|+|.|.|.+++.+ +.--++++.+||+||+|-+.|..++..++.++-.+
T Consensus 365 ~Dv-----gLlTGDvqin-------PeAsCLIMTTEILRsMLYr-gadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 365 GDV-----GLLTGDVQIN-------PEASCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred ccc-----ceeecceeeC-------CCcceEeehHHHHHHHHhc-ccchhhccceEEEeeeeecccccccccceeeeeec
Confidence 642 3677776433 3467999999999999987 33346889999999999999999988888877766
Q ss_pred hhcCCCceEEEEEeecCCCcccccccccccc
Q psy15524 162 KKQKPQFQSILLSATLTPATCWCKHTETLKF 192 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~ 192 (930)
+ .++++|+||||.++...++.|.+.++-
T Consensus 432 P---~HV~~IlLSATVPN~~EFA~WIGRtK~ 459 (1248)
T KOG0947|consen 432 P---RHVNFILLSATVPNTLEFADWIGRTKQ 459 (1248)
T ss_pred c---ccceEEEEeccCCChHHHHHHhhhccC
Confidence 5 456999999999999888888776653
No 209
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=6e-17 Score=187.73 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=115.5
Q ss_pred CCCccC---cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 1 MNITQV---TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 1 ~g~~~l---~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
+||+.| +|+|.++++.++.++++++.++||+|||++|++|++..+.. +..++||+||++||.|.++.+
T Consensus 85 ~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~~v~IVTpTrELA~Qdae~m 155 (970)
T PRK12899 85 SGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GKPVHLVTVNDYLAQRDCEWV 155 (970)
T ss_pred ccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cCCeEEEeCCHHHHHHHHHHH
Confidence 478888 99999999999999999999999999999999999987754 123899999999999999999
Q ss_pred HHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCCCccC-------CCccEEEEcccccccc
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLKF-------SKVEHLVLDEADRILD 147 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~~~~l-------~~l~~vViDE~h~~~~ 147 (930)
..+...++ +.+.+++||.....+.... ++||+||||+++ .++++. +.+.+ +.+.++||||||.|+-
T Consensus 156 ~~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 156 GSVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHHhhcccccEEEEechhhhhh
Confidence 99988776 7888899998888776554 599999999999 999876 43443 3668999999998863
No 210
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.70 E-value=7.8e-16 Score=164.21 Aligned_cols=160 Identities=23% Similarity=0.204 Sum_probs=127.9
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+++.+|......++.+ |+|++.|||-|||.++++.+...+.. .++ ++|+++||+-|+.|+++.|.+...-
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~-------~~~-kvlfLAPTKPLV~Qh~~~~~~v~~i- 84 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW-------FGG-KVLFLAPTKPLVLQHAEFCRKVTGI- 84 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh-------cCC-eEEEecCCchHHHHHHHHHHHHhCC-
Confidence 5788999988888776 99999999999999999999988864 334 8999999999999999999998753
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+.-.+..++|..... .+..++...+|+|+||+.+.+-+.. +.+++.++.++|+||||+-.+..- +..+....-..
T Consensus 85 p~~~i~~ltGev~p~-~R~~~w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyA---Yv~Va~~y~~~ 159 (542)
T COG1111 85 PEDEIAALTGEVRPE-EREELWAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYA---YVFVAKEYLRS 159 (542)
T ss_pred ChhheeeecCCCChH-HHHHHHhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcch---HHHHHHHHHHh
Confidence 334555677766554 4455666789999999999887765 889999999999999998765432 23444444445
Q ss_pred CCCceEEEEEeecCC
Q psy15524 165 KPQFQSILLSATLTP 179 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~ 179 (930)
..++.++||||||+.
T Consensus 160 ~k~~~ilgLTASPGs 174 (542)
T COG1111 160 AKNPLILGLTASPGS 174 (542)
T ss_pred ccCceEEEEecCCCC
Confidence 567899999999976
No 211
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.70 E-value=4.7e-16 Score=158.18 Aligned_cols=167 Identities=37% Similarity=0.578 Sum_probs=131.1
Q ss_pred CCCccCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+++.+|+++|.+++..+..+ +++++.+|||+|||.++..+++..+... ...+++|++|+.+++.|+.+.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHHH
Confidence 36788999999999999988 9999999999999999999999887642 134599999999999999999998
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCC-cEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGI-SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
.+........ ...++............+. +++++|++.+.+.+.. ......+++++|+||+|.+....+...+..++
T Consensus 77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 77 LGPSLGLKVV-GLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEN-DLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HhccCCeEEE-EEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHc-CCcCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 8754331233 3444444344444444454 9999999999998876 33567789999999999998767777777777
Q ss_pred HHHhhcCCCceEEEEEeecCC
Q psy15524 159 EILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+ .+..+++++|||++.
T Consensus 155 ~~~---~~~~~~v~~saT~~~ 172 (201)
T smart00487 155 KLL---PKNVQLLLLSATPPE 172 (201)
T ss_pred HhC---CccceEEEEecCCch
Confidence 666 445789999999974
No 212
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.70 E-value=7.3e-17 Score=191.16 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=119.5
Q ss_pred cCcHHHHHHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILDG---GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g---~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.||+.|+++++.+.++ .++++++|||||||.+|+.++...+.. |.++|||+|+++|+.|+++++++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 5899999999999874 789999999999999999888777643 5579999999999999999998865
Q ss_pred hhcCCceeEEeeCCCchHHH----HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH-H--HH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSE----KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-R--DI 154 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~----~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~-~--~~ 154 (930)
. ..+..++|+.+..+. .....+.++|+|||+..+. ..+.++++|||||+|....++.. + ..
T Consensus 215 g----~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 215 G----APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred C----CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 3 356667777654332 2233456899999997652 34788999999999987644321 1 12
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCcccccc
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKH 186 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~ 186 (930)
+.+ ..++....+.+++++|||++.++.....
T Consensus 283 r~v-a~~ra~~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 283 RDL-AVVRAKLENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred HHH-HHHHhhccCCCEEEEcCCCCHHHHHHHh
Confidence 222 2334445678999999999877655433
No 213
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.69 E-value=9.6e-16 Score=177.30 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=97.4
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
++|+|.+++..+..++..++.++||+|||++|.+|++..... +..++|++|+++||.|.++.+..+...++
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 455555566655555557999999999999999998766543 34599999999999999999999988777
Q ss_pred CceeEEeeCCC---chHHHHHHhcCCCcEEEEChHHH-HHHHhc-----CCCccCCCccEEEEcccccccc
Q psy15524 86 WIVPSWLTGGE---KMKSEKARIRKGISILVATPGRL-LDHCKH-----TETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 86 ~~~~~~~~g~~---~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~-----~~~~~l~~l~~vViDE~h~~~~ 147 (930)
+.+++..++. ...........+++|++|||+++ .+.+.. .....++.+.++||||||.|+-
T Consensus 140 -Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 140 -LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred -CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 5566555542 23333334446799999999999 444432 1234478899999999999853
No 214
>KOG0925|consensus
Probab=99.69 E-value=6.6e-15 Score=154.70 Aligned_cols=331 Identities=15% Similarity=0.193 Sum_probs=207.5
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.|... ..++.-.+.|.+.... .....+.+-+..+.+++-+++.+.||||||...--..++.... ....+.
T Consensus 26 pf~~~-p~s~rY~~ilk~R~~L-Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~--------~~~~v~ 95 (699)
T KOG0925|consen 26 PFNGK-PYSQRYYDILKKRREL-PVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS--------HLTGVA 95 (699)
T ss_pred CCCCC-cCcHHHHHHHHHHhcC-chHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh--------hcccee
Confidence 45555 4556555655542111 1122334445555566779999999999998533334444332 124567
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
.--|.|--|.+++.+...-..-.-...+++...-++.......++ +||.|.|+.-.-+. -.+.+.+++|+||
T Consensus 96 CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lk------y~tDgmLlrEams~--p~l~~y~viiLDe 167 (699)
T KOG0925|consen 96 CTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLK------YCTDGMLLREAMSD--PLLGRYGVIILDE 167 (699)
T ss_pred ecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHH------HhcchHHHHHHhhC--cccccccEEEech
Confidence 777999999888877665443211112222222222222222222 68888877655442 3468899999999
Q ss_pred chhhhhcCcH-HHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 551 ADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 551 ah~l~~~g~~-~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
||. .... +.+..+++.....+++.++|.+|||+.. .-...++.|+..+.+.+. ...+-.|
T Consensus 168 ahE---RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~-------------~PvEi~Y 228 (699)
T KOG0925|consen 168 AHE---RTLATDILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGT-------------HPVEIFY 228 (699)
T ss_pred hhh---hhHHHHHHHHHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeecCCC-------------CceEEEe
Confidence 993 3322 3334444444455679999999999854 233455666655555431 1233355
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc----C--CCceEEEecCCCCHHHHHHHH
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL----G--ENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~----~--~~~~~~~lhg~~~~~~R~~v~ 703 (930)
...+..+.+.+....+.+.+.. +..+-++||..+.++.+..++.+.... . ....+..+| +.+...++
T Consensus 229 t~e~erDylEaairtV~qih~~---ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iF 301 (699)
T KOG0925|consen 229 TPEPERDYLEAAIRTVLQIHMC---EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIF 301 (699)
T ss_pred cCCCChhHHHHHHHHHHHHHhc---cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhcccc
Confidence 5555566666666655554433 237899999999999888877776321 1 145778888 33344444
Q ss_pred HHhhc---C--CCcEEEeccccccccCCCCccEEEEec------------------CCCChhhHHhhhcccccCCCCceE
Q psy15524 704 KTFRS---V--KSGVLICTDVAARGLDLPLVDWIVQYT------------------APSSSTDYVHRVGRTARVGHEGSS 760 (930)
Q Consensus 704 ~~F~~---~--~~~vLv~T~~~~~GlDip~v~~VI~~~------------------~p~s~~~y~qr~GRagR~g~~g~~ 760 (930)
+.-.. | ..+|+|+|++++..+.+++|.+||.-+ .|-|..+-.||.||+||. ++|.|
T Consensus 302 ep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkc 380 (699)
T KOG0925|consen 302 EPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKC 380 (699)
T ss_pred CCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCce
Confidence 43321 2 346999999999999999999999755 456778889999999995 59999
Q ss_pred EEEeCc
Q psy15524 761 LLFLIP 766 (930)
Q Consensus 761 ~~~~~~ 766 (930)
+.+++.
T Consensus 381 frLYte 386 (699)
T KOG0925|consen 381 FRLYTE 386 (699)
T ss_pred EEeecH
Confidence 999984
No 215
>KOG0948|consensus
Probab=99.68 E-value=1.1e-16 Score=175.99 Aligned_cols=158 Identities=23% Similarity=0.248 Sum_probs=131.4
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|-|+|..||..+-.+.++||+|.|.+|||.++-.++...+.. ..+++|-+|.++|.+|.++++..-+.+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 5789999999999999999999999999999999888887755 346999999999999999999888754
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+++++|+.... ..+.++|+|.|.|.+++.+ +.--++.+.+||+||+|-|-|..++-.++.-+-.++
T Consensus 199 ----VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYR-GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP-- 264 (1041)
T KOG0948|consen 199 ----VGLMTGDVTIN-------PDASCLVMTTEILRSMLYR-GSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP-- 264 (1041)
T ss_pred ----cceeecceeeC-------CCCceeeeHHHHHHHHHhc-cchHhheeeeEEeeeehhccccccceeeeeeEEecc--
Confidence 55667776433 3467999999999999987 444579999999999999999887766665554444
Q ss_pred CCCceEEEEEeecCCCccccccc
Q psy15524 165 KPQFQSILLSATLTPATCWCKHT 187 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~~~~~~~~~ 187 (930)
.+++.++||||+|+...++.|.
T Consensus 265 -~~vr~VFLSATiPNA~qFAeWI 286 (1041)
T KOG0948|consen 265 -DNVRFVFLSATIPNARQFAEWI 286 (1041)
T ss_pred -ccceEEEEeccCCCHHHHHHHH
Confidence 4569999999999987766553
No 216
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.67 E-value=2.5e-16 Score=180.77 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=107.0
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|+++|..+...+..|+ ++.++||+|||++|.+|++-.... |.++.|++||.+||.|.++.+..+.
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 44 58899999988888776 999999999999999999644332 3459999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCC-----CccCCCccEEEEcccccccc
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE-----TLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~-----~~~l~~l~~vViDE~h~~~~ 147 (930)
..++ +.++++.|+......... -.++|+||||+++ .++++..- .+.++.+.++||||+|.++-
T Consensus 122 ~~LG-Lsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 122 RFLG-LSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred ccCC-CeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 8877 888889988775544333 3589999999999 88876531 34578999999999998864
No 217
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=2.8e-15 Score=175.33 Aligned_cols=132 Identities=23% Similarity=0.256 Sum_probs=106.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|. .|+++|..+++.+..|+ ++.+.||+|||++|.+|++..... |.+++|++||++||.|.++.+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 355 68999999999888886 999999999999999999865543 567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~ 146 (930)
...++ +.++++.|+.....+.+. ..++||++|||+++ .+++... ....++.+.++||||||.|+
T Consensus 143 ~~~lG-l~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 143 YEFLG-LTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HhhcC-CeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 98877 888889888874333333 34599999999998 4444321 22346889999999999875
No 218
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.65 E-value=1.5e-14 Score=166.42 Aligned_cols=332 Identities=18% Similarity=0.190 Sum_probs=211.7
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++|+-.|.+..+.-+..-++.+.||-||||++.+|+.-..+. |..+.+++..-.||..-++.+.+++.+.
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~~~L 148 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLYEFL 148 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHHHHc
Confidence 3556667777777778888999999999999999999865543 7789999999999999999999999877
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhc-----cCCcccccceEEEEecchhhh----------hc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKH-----TETLKFSKVEHLVLDEADRIL----------DQ 557 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~-----~~~~~~~~l~~lVlDEah~l~----------~~ 557 (930)
+. .+++...+.. .+.++....+||.++|...| .|.++. ........+.+.|+||+|.++ ..
T Consensus 149 Gl-svG~~~~~m~--~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG 225 (822)
T COG0653 149 GL-SVGVILAGMS--PEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISG 225 (822)
T ss_pred CC-ceeeccCCCC--hHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeec
Confidence 64 4555555543 33334456799999999887 233322 122235568999999999875 11
Q ss_pred ------CcHHHHHHHHHHHhhcC-----ccceEEEEccccCHHHHH------------------------HHhhhcCCCE
Q psy15524 558 ------GYERDIAEFLEILKKQK-----PQFQSILLSATLTPAVQR------------------------LAGMTLQNPI 602 (930)
Q Consensus 558 ------g~~~~l~~i~~~l~~~~-----~~~q~vl~SAT~~~~~~~------------------------l~~~~~~~~~ 602 (930)
.....+..++..+.... ...+.+.++-.=-...+. .-....+|-.
T Consensus 226 ~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~d 305 (822)
T COG0653 226 PAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVD 305 (822)
T ss_pred ccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCe
Confidence 12344445554443221 112233332210000000 0001111111
Q ss_pred EEEccCC-------------------------------------------------------------CCc-------cc
Q psy15524 603 QIDAADS-------------------------------------------------------------TDI-------HN 614 (930)
Q Consensus 603 ~i~~~~~-------------------------------------------------------------~~~-------~~ 614 (930)
+|-..+. ... -.
T Consensus 306 YIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY 385 (822)
T COG0653 306 YIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY 385 (822)
T ss_pred eEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc
Confidence 1100000 000 00
Q ss_pred CccceecCCCce------EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEE
Q psy15524 615 TTDSLVIPDSLK------QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688 (930)
Q Consensus 615 ~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~ 688 (930)
..+...+|.... .-.+....+.|+.+....+...... ++|+||-..+.+..+.+.++|.+. +++..
T Consensus 386 ~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~-----gqPvLvgT~sie~SE~ls~~L~~~---~i~h~ 457 (822)
T COG0653 386 GLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEK-----GQPVLVGTVSIEKSELLSKLLRKA---GIPHN 457 (822)
T ss_pred CCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhc-----CCCEEEcCcceecchhHHHHHHhc---CCCce
Confidence 001111221111 1112344556777777777664332 889999999999999999999875 77777
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC---Cc--------cEEEEecCCCChhhHHhhhcccccCCCC
Q psy15524 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP---LV--------DWIVQYTAPSSSTDYVHRVGRTARVGHE 757 (930)
Q Consensus 689 ~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip---~v--------~~VI~~~~p~s~~~y~qr~GRagR~g~~ 757 (930)
.+++.-...+-..+.++.+.|. |-|||++|+||.||. +. -+||-..-..|..---|.-||+||.|.+
T Consensus 458 VLNAk~h~~EA~Iia~AG~~ga--VTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 458 VLNAKNHAREAEIIAQAGQPGA--VTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred eeccccHHHHHHHHhhcCCCCc--cccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 7788877666666666555555 899999999999993 32 1677777777777777999999999999
Q ss_pred ceEEEEeCcc
Q psy15524 758 GSSLLFLIPS 767 (930)
Q Consensus 758 g~~~~~~~~~ 767 (930)
|.+..|++=.
T Consensus 536 G~S~F~lSle 545 (822)
T COG0653 536 GSSRFYLSLE 545 (822)
T ss_pred chhhhhhhhH
Confidence 9999888843
No 219
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=1.5e-15 Score=143.02 Aligned_cols=120 Identities=39% Similarity=0.635 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv 715 (930)
.|...+...+..... .++++||||++.+.++.+++.|.+. +..+..+||+++..+|..+++.|.++...+|+
T Consensus 12 ~k~~~i~~~i~~~~~-----~~~~~lvf~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili 83 (131)
T cd00079 12 EKLEALLELLKEHLK-----KGGKVLIFCPSKKMLDELAELLRKP---GIKVAALHGDGSQEEREEVLKDFREGEIVVLV 83 (131)
T ss_pred HHHHHHHHHHHhccc-----CCCcEEEEeCcHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 677777777765432 2679999999999999999999873 67788899999999999999999999999999
Q ss_pred eccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEE
Q psy15524 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763 (930)
Q Consensus 716 ~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~ 763 (930)
||+++++|+|+|++++||.+++|.+..+|.|++||++|.|+.|.++++
T Consensus 84 ~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 84 ATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999999998887653
No 220
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.65 E-value=1.6e-13 Score=168.75 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=90.5
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC-CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG-ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~-~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T 717 (930)
..+...+...+.. .+++++|+++|.+..+.+++.|..... .++.+.. . +++...|..+.+.|++++..||++|
T Consensus 738 ~~la~~i~~l~~~----~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~ 811 (928)
T PRK08074 738 EEVAAYIAKIAKA----TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGT 811 (928)
T ss_pred HHHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEec
Confidence 4555555544322 267999999999999999999876432 1233332 3 3444568899999999988999999
Q ss_pred cccccccCCCCc--cEEEEecCCC----C--------------------------hhhHHhhhcccccCCCCceEEEEeC
Q psy15524 718 DVAARGLDLPLV--DWIVQYTAPS----S--------------------------STDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 718 ~~~~~GlDip~v--~~VI~~~~p~----s--------------------------~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
..+.+|||+|+- ++||....|. + ...+.|-+||.-|...+-.+++++.
T Consensus 812 ~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD 891 (928)
T PRK08074 812 SSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLD 891 (928)
T ss_pred CcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEec
Confidence 999999999964 6788777553 1 1234788999999887654555555
Q ss_pred cc--cHHHHHHHH
Q psy15524 766 PS--EVKLVEELQ 776 (930)
Q Consensus 766 ~~--e~~~~~~l~ 776 (930)
++ ...|=+.+.
T Consensus 892 ~R~~~k~Yg~~~l 904 (928)
T PRK08074 892 RRLTTTSYGKYFL 904 (928)
T ss_pred CccccchHHHHHH
Confidence 44 333444443
No 221
>KOG0390|consensus
Probab=99.64 E-value=7.8e-14 Score=159.99 Aligned_cols=343 Identities=19% Similarity=0.206 Sum_probs=205.4
Q ss_pred CCCHHHHHhHHhhhc---C-------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILD---G-------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~---~-------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
.|+|+|++.+.-+.. | ..+|+.-..|+|||+. .++.+..+++..|...+ --.++|||+|. .|...|.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~-~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP-LINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc-cccccEEEccH-HHHHHHH
Confidence 577999999877653 2 2378888899999997 56666666654332111 12678999996 8999999
Q ss_pred HHHHHhhccCCCcceEEEeCCCch--HHHHHHHh-----cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 484 EIFTKLCKSFTWIVPSWLTGGEKM--KSEKARIR-----KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~gg~~~--~~~~~~~~-----~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
++|.++... ..+.+..++|+.+. ......+. ...-|++-+.+.+.++++. +....++++|+||.|++=+
T Consensus 315 kEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 315 KEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccc
Confidence 999998864 23455556666553 11111111 1244777777777666553 4567899999999998743
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCH-HHHH-------------------------------------------
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTP-AVQR------------------------------------------- 592 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~-~~~~------------------------------------------- 592 (930)
.. ..+...|.+.. ..+.|++|.|+-. ++.+
T Consensus 391 ~~-----s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 391 SD-----SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred hh-----hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 32 33334444333 3455788888521 1111
Q ss_pred -----H---HhhhcCC----------C---EEEEccCCC-----------Cc--cc------------------------
Q psy15524 593 -----L---AGMTLQN----------P---IQIDAADST-----------DI--HN------------------------ 614 (930)
Q Consensus 593 -----l---~~~~~~~----------~---~~i~~~~~~-----------~~--~~------------------------ 614 (930)
| ...++.. | .++-+.... .. ..
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 1 1111000 0 000000000 00 00
Q ss_pred ------------CccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecc---hhhHHHHHHHHhh
Q psy15524 615 ------------TTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT---QDMADYHTELLST 679 (930)
Q Consensus 615 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s---~~~~~~~~~~l~~ 679 (930)
.......+...+..........++..|..++... ..++++|+.- ......+.+.+.+
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~--------~ek~~~~~v~Isny~~tldl~e~~~~ 616 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI--------REKLLVKSVLISNYTQTLDLFEQLCR 616 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH--------hhhcceEEEEeccHHHHHHHHHHHHh
Confidence 0000000111111111112234555555554322 3344444433 3333333344443
Q ss_pred hcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc---EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC
Q psy15524 680 VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG---VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756 (930)
Q Consensus 680 ~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~---vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 756 (930)
. .|..++.+||.|+..+|..+++.|.+.... .|.+|-+.+.||++-+.+.||.+|++++|+.-.|.++|+-|.|+
T Consensus 617 ~--~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQ 694 (776)
T KOG0390|consen 617 W--RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQ 694 (776)
T ss_pred h--cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCC
Confidence 3 388999999999999999999999865433 57788999999999999999999999999999999999999999
Q ss_pred CceEEEE--eC---cccHHHHHHHHhcC
Q psy15524 757 EGSSLLF--LI---PSEVKLVEELQNRR 779 (930)
Q Consensus 757 ~g~~~~~--~~---~~e~~~~~~l~~~~ 779 (930)
.-.|+++ ++ .+|..|-+...+.+
T Consensus 695 Kk~v~iYrLlatGtiEEk~~qrq~~K~~ 722 (776)
T KOG0390|consen 695 KKPVYIYRLLATGTIEEKIYQRQTHKEG 722 (776)
T ss_pred cceEEEEEeecCCCchHHHHHHHHHhhh
Confidence 8776654 43 34444555555444
No 222
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.63 E-value=6.6e-16 Score=130.56 Aligned_cols=72 Identities=42% Similarity=0.746 Sum_probs=70.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC
Q psy15524 684 NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755 (930)
Q Consensus 684 ~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 755 (930)
++.+..+||++++.+|..+++.|.++...|||||+++++|+|+|++++||++++|.++.+|.|++||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 788999999999999999999999999999999999999999999999999999999999999999999986
No 223
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=7.3e-15 Score=170.09 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=105.9
Q ss_pred cCcHHHHHHHHHhhc-C--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILD-G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.|+|+|++|+..+.. | ++.++++|||+|||++.+..+.. + +.++|||||+.+|+.|+.++|.+++
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 589999999999873 4 37899999999999998765543 2 1239999999999999999999986
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-------CCccCCCccEEEEcccccccccCcHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
.. ....+..++|+.... .....+|+|+|+..+.....+. ..+.-...++||+||||++... .+
T Consensus 323 ~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~f 392 (732)
T TIGR00603 323 TI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MF 392 (732)
T ss_pred CC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HH
Confidence 42 224455566553221 1234689999998775432211 1122356889999999998643 34
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
..++..+.. ...+||||||....
T Consensus 393 r~il~~l~a----~~RLGLTATP~ReD 415 (732)
T TIGR00603 393 RRVLTIVQA----HCKLGLTATLVRED 415 (732)
T ss_pred HHHHHhcCc----CcEEEEeecCcccC
Confidence 445554433 25899999997543
No 224
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.62 E-value=1.4e-13 Score=158.26 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=75.4
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC----CCcEEEeccccccccCC------
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV----KSGVLICTDVAARGLDL------ 726 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~----~~~vLv~T~~~~~GlDi------ 726 (930)
+++++|.|.|....+.+++.+...+. ..++ ..|..+ .|...+++|++. ...||++|+.+.+|||+
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l~--~~~l-~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGIP--AEIV-IQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVS 544 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhcC--CCEE-EeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCC
Confidence 67999999999999999999976442 3333 356442 456788999874 68899999999999999
Q ss_pred --C--CccEEEEecCCCCh-------------------------hhHHhhhcccccCCCC--ceEEEEeCcc
Q psy15524 727 --P--LVDWIVQYTAPSSS-------------------------TDYVHRVGRTARVGHE--GSSLLFLIPS 767 (930)
Q Consensus 727 --p--~v~~VI~~~~p~s~-------------------------~~y~qr~GRagR~g~~--g~~~~~~~~~ 767 (930)
| .++.||....|..+ ..+.|-+||.-|...+ -..+.++.+.
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 2 47788887766321 2345777887777665 3344444443
No 225
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=8.5e-15 Score=170.59 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=100.0
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
+++.|--.--.+ ...-++.++||+|||++|.+|++..... |..++|++||++||.|.++.+..+...++
T Consensus 83 ~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 83 HFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred cchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 455554433333 3445899999999999999999977654 33499999999999999999999998777
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCCCccC-----CCccEEEEccccccc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLKF-----SKVEHLVLDEADRIL 146 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~~~~l-----~~l~~vViDE~h~~~ 146 (930)
+.++++.|+.......... .+||+||||++| .+++...-.+.+ +.+.++||||||.|+
T Consensus 152 -Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 152 -LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred -ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 8888899987766554433 589999999999 888876423333 689999999999875
No 226
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=2.1e-15 Score=170.38 Aligned_cols=146 Identities=23% Similarity=0.260 Sum_probs=104.5
Q ss_pred cCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.|+++|++|+.++.+ ++..++++|||+|||.+++..+.... ..+|||+|+.+|+.|+.+.+...
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------------~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------------RSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------------CCEEEEECcHHHHHHHHHHHHHh
Confidence 589999999999988 88999999999999999887775432 22999999999999999887777
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
.... ...+.+.|+.... . . ..|.|+|...+.... ....+..++.++||+||||++....+. .+...
T Consensus 104 ~~~~--~~~g~~~~~~~~~-~-----~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~ 169 (442)
T COG1061 104 LLLN--DEIGIYGGGEKEL-E-----P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYR----RILEL 169 (442)
T ss_pred cCCc--cccceecCceecc-C-----C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHH----HHHHh
Confidence 5421 1334444443211 0 1 369999998886642 112233457999999999999876653 33333
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
+....+ ++||||||..
T Consensus 170 ~~~~~~---~LGLTATp~R 185 (442)
T COG1061 170 LSAAYP---RLGLTATPER 185 (442)
T ss_pred hhcccc---eeeeccCcee
Confidence 332221 8999999874
No 227
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=99.62 E-value=7.9e-16 Score=122.00 Aligned_cols=62 Identities=47% Similarity=0.725 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHHHHHhcCCCCCCcc
Q psy15524 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880 (930)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~~a~sf~l~~~p~~ 880 (930)
+|..+++++.+|+++.++|++||+||+|+|.+| ++++.||++++||++|+|+||||.++|++
T Consensus 2 iq~~l~~~~~~d~~l~~lA~~Af~SyvraY~~~-~~~k~iF~~~~L~l~~~A~sfGL~~~P~v 63 (65)
T PF13959_consen 2 IQQKLEKLVAKDRELKELAQKAFVSYVRAYASH-KELKDIFNVKKLDLGHLAKSFGLLEAPKV 63 (65)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-hhhhhhCCcccCCHHHHHHHcCCCCCCCC
Confidence 688999999999999999999999999999999 78999999999999999999999999986
No 228
>PRK09694 helicase Cas3; Provisional
Probab=99.61 E-value=3.3e-14 Score=169.61 Aligned_cols=166 Identities=22% Similarity=0.130 Sum_probs=110.1
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
.+|+|+|+.+......+..+++.||||+|||.+++..+...+.. ....+++|..||+++++|+++++.++...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 37999999886544445679999999999999988776644432 22346999999999999999999876543
Q ss_pred c-CCceeEEeeCCCchHHH---------------------HHHhc---CC---CcEEEEChHHHHHHHhcCCCccCCCc-
Q psy15524 84 F-TWIVPSWLTGGEKMKSE---------------------KARIR---KG---ISILVATPGRLLDHCKHTETLKFSKV- 134 (930)
Q Consensus 84 ~-~~~~~~~~~g~~~~~~~---------------------~~~l~---~~---~~Ilv~Tp~~l~~~l~~~~~~~l~~l- 134 (930)
. +...+.+..|....... ...+. +. .+|+|||+.+++......+...++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 22334444444321100 01121 11 58999999998865544332233333
Q ss_pred ---cEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 135 ---EHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 135 ---~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
++|||||+|.+ +......+..+++.+... ..++|+||||++.
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~--g~~vIllSATLP~ 482 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA--GGSVILLSATLPA 482 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhc--CCcEEEEeCCCCH
Confidence 48999999987 333334556666665443 3579999999975
No 229
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.60 E-value=5.5e-14 Score=160.94 Aligned_cols=264 Identities=19% Similarity=0.224 Sum_probs=167.9
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|+ .|+..|+.+...+..|++.-+.||||.|||.--++..+.... .|.++++++||..|+.|.+++++++.
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~---------kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK---------KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh---------cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 66 699999999999999999999999999999855554443322 25679999999999999999999998
Q ss_pred hhcCCceeEE-eeCCCchH---HHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHH
Q psy15524 82 KSFTWIVPSW-LTGGEKMK---SEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 156 (930)
Q Consensus 82 ~~~~~~~~~~-~~g~~~~~---~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~ 156 (930)
...+...+.. +.+.-..+ .....+. ++.||+|+|..-|....... .--+++++++|.+|.++..+. .+.+
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L---~~~kFdfifVDDVDA~Lkask--NvDr 224 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL---SKLKFDFIFVDDVDAILKASK--NVDR 224 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh---cccCCCEEEEccHHHHHhccc--cHHH
Confidence 7766333333 33332222 2233344 46999999998887776541 124799999999999988762 3344
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhh-------hccchhhHHHHHHHH-----hh
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRIL-------DQGYERDIAEFLEIL-----KK 224 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~-------~~~~~~~~~~~~~~~-----~~ 224 (930)
++..+. | ...+++.+.++. ......++++.++.. ..
T Consensus 225 iL~LlG----------f----------------------~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~ 272 (1187)
T COG1110 225 LLRLLG----------F----------------------SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKK 272 (1187)
T ss_pred HHHHcC----------C----------------------CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 443331 1 111222222211 111112233332222 22
Q ss_pred cCcCceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhcccc
Q psy15524 225 QKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304 (930)
Q Consensus 225 ~~~~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 304 (930)
..+..+.++.|||..+.-.++ .+++.-..+++.... ....||...|...+...|...++..+
T Consensus 273 r~k~g~LvvsSATg~~rg~R~--~LfReLlgFevG~~~---------~~LRNIvD~y~~~~~~e~~~elvk~l------- 334 (1187)
T COG1110 273 RRKLGILVVSSATGKPRGSRL--KLFRELLGFEVGSGG---------EGLRNIVDIYVESESLEKVVELVKKL------- 334 (1187)
T ss_pred ccCCceEEEeeccCCCCCchH--HHHHHHhCCccCccc---------hhhhheeeeeccCccHHHHHHHHHHh-------
Confidence 333458999999987653211 122333334333332 22456666666555555666555555
Q ss_pred ccCCcceEEEEEec---ccchhhhHHHHhhhhh
Q psy15524 305 NEDEESKMLVFMAT---QDMADYHTELLSTKKK 334 (930)
Q Consensus 305 ~~~~~~~~iVF~~s---~~~~~~l~~~L~~~~~ 334 (930)
+...|||++. ++.++++++.|+++|-
T Consensus 335 ----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi 363 (1187)
T COG1110 335 ----GDGGLIFVPIDYGREKAEELAEYLRSHGI 363 (1187)
T ss_pred ----CCCeEEEEEcHHhHHHHHHHHHHHHhcCc
Confidence 4578999999 9999999999999873
No 230
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.58 E-value=3e-14 Score=159.01 Aligned_cols=170 Identities=25% Similarity=0.340 Sum_probs=135.5
Q ss_pred CCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
.| .||..|+.++..|..+ .+-|+++.-|||||++++++++..+.. |.++.+++||--||.|-++
T Consensus 260 PF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q~ALMAPTEILA~QH~~ 329 (677)
T COG1200 260 PF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQAALMAPTEILAEQHYE 329 (677)
T ss_pred CC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCeeEEeccHHHHHHHHHH
Confidence 45 5999999999999865 468999999999999999999998854 8899999999999999999
Q ss_pred HHHHHhhhcCCceeEEeeCCCchHHHHH---HhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH
Q psy15524 76 IFTKLCKSFTWIVPSWLTGGEKMKSEKA---RIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE 151 (930)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~ 151 (930)
.+.+++..++ +.+..+.|......... .+.. ..+|+|||-.- .. ..+.++++.++|+||-|++.=.+
T Consensus 330 ~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL-----iQ-d~V~F~~LgLVIiDEQHRFGV~Q-- 400 (677)
T COG1200 330 SLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL-----IQ-DKVEFHNLGLVIIDEQHRFGVHQ-- 400 (677)
T ss_pred HHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh-----hh-cceeecceeEEEEeccccccHHH--
Confidence 9999999887 88899998876554433 3344 49999999533 22 55678999999999999864222
Q ss_pred HHHHHHHHHHhhcCC-CceEEEEEeecCCCcccccccccccccccc
Q psy15524 152 RDIAEFLEILKKQKP-QFQSILLSATLTPATCWCKHTETLKFSKVE 196 (930)
Q Consensus 152 ~~~~~i~~~l~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 196 (930)
+ ..|...+. .+.++.|||||-|++..+..++.++.|.++
T Consensus 401 ---R---~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~Id 440 (677)
T COG1200 401 ---R---LALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIID 440 (677)
T ss_pred ---H---HHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhc
Confidence 2 23445555 689999999999988777776666655554
No 231
>KOG0387|consensus
Probab=99.57 E-value=1.6e-13 Score=153.01 Aligned_cols=338 Identities=17% Similarity=0.242 Sum_probs=208.6
Q ss_pred CCCHHHHHhHHhhhc----CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~----~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.+.++|+..+..+.+ +..-|+.-..|-|||.. .+..|..+.... + --..+|||||. .+..||..+|..+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~-k----~~~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG-K----LTKPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc-c----ccCceEEEccH-HHHHHHHHHHHHh
Confidence 566889999887763 45688999999999985 333333333311 1 12559999997 7889999999988
Q ss_pred hccCCCcceEEEeCCCch--------HHHHHH-H----hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 490 CKSFTWIVPSWLTGGEKM--------KSEKAR-I----RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~--------~~~~~~-~----~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
+..+ .+..+.|-... ...+.. + ..+..|+|+|...+.-+- ..+.-..++++|+||.|+|-+
T Consensus 278 ~p~~---rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~---d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 278 WPPF---RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG---DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred Ccce---EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC---cccccccccEEEecCcccccC
Confidence 7544 23333332220 001111 1 124679999987653221 223334588999999999865
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccC-HHHHHHHhhh-----------------cCCCEEEEccCC---------
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLT-PAVQRLAGMT-----------------LQNPIQIDAADS--------- 609 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~-~~~~~l~~~~-----------------~~~~~~i~~~~~--------- 609 (930)
..-. +...+..++ ..+.+.+|.|+- +.+.++-..+ +..|+.+..+..
T Consensus 352 pns~--islackki~----T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~a 425 (923)
T KOG0387|consen 352 PNSK--ISLACKKIR----TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTA 425 (923)
T ss_pred CccH--HHHHHHhcc----ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHH
Confidence 5422 222222222 344566676642 1111111000 000110000000
Q ss_pred --------------------------------------------------------------CC---------cccCccc
Q psy15524 610 --------------------------------------------------------------TD---------IHNTTDS 618 (930)
Q Consensus 610 --------------------------------------------------------------~~---------~~~~~~~ 618 (930)
.. ....+..
T Consensus 426 ykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnH 505 (923)
T KOG0387|consen 426 YKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNH 505 (923)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCC
Confidence 00 0000000
Q ss_pred eec--C--CCceEE--E-EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEec
Q psy15524 619 LVI--P--DSLKQH--F-IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLH 691 (930)
Q Consensus 619 ~~~--~--~~~~~~--~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lh 691 (930)
+.. + +...+. | -......|+..+..++...... +.++++|..++.+.+.+...|... +++.+..+.
T Consensus 506 Pdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kq-----g~rvllFsqs~~mLdilE~fL~~~--~~ysylRmD 578 (923)
T KOG0387|consen 506 PDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQ-----GDRVLLFSQSRQMLDILESFLRRA--KGYSYLRMD 578 (923)
T ss_pred cccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhC-----CCEEEEehhHHHHHHHHHHHHHhc--CCceEEEec
Confidence 000 0 001111 1 1122345777788887765443 679999999999999998888852 589999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCc--EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE--EeCc-
Q psy15524 692 GSMSQSERTEVFKTFRSVKSG--VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL--FLIP- 766 (930)
Q Consensus 692 g~~~~~~R~~v~~~F~~~~~~--vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~--~~~~- 766 (930)
|..+...|....++|.++..- .|++|.+.+-|+|+.+.+-||.||+.++|.+-.|-.-||-|.|+.-.+++ +++.
T Consensus 579 GtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 999999999999999988653 68999999999999999999999999999999999999999999655443 3443
Q ss_pred --ccHHHHHHHHh
Q psy15524 767 --SEVKLVEELQN 777 (930)
Q Consensus 767 --~e~~~~~~l~~ 777 (930)
+|.-|-+.+.+
T Consensus 659 TIEEkiY~rQI~K 671 (923)
T KOG0387|consen 659 TIEEKIYHRQIFK 671 (923)
T ss_pred cHHHHHHHHHHHH
Confidence 34445444443
No 232
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=7.3e-15 Score=167.90 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=97.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHH---
Q psy15524 24 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS--- 100 (930)
Q Consensus 24 lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~--- 100 (930)
|++||||||||++|+..+...+.. |.++||++|+++|+.|+++++++.+. ..+..++++....+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---------g~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---------GKSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHH
Confidence 578999999999998776655533 55799999999999999999998753 33455666554332
Q ss_pred -HHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc---HHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 101 -EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY---ERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 101 -~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~---~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
+.....+.++|+|||+..+. ..+.++++|||||+|....++. ....+.+ ..++....+++++++|||
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~-a~~ra~~~~~~vil~SAT 138 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV-AVYRAKKFNCPVVLGSAT 138 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHH-HHHHHHhcCCCEEEEeCC
Confidence 22333445899999987652 3478899999999998765431 1111222 222333457899999999
Q ss_pred cCCCccccc
Q psy15524 177 LTPATCWCK 185 (930)
Q Consensus 177 ~~~~~~~~~ 185 (930)
|+.++....
T Consensus 139 Psles~~~~ 147 (505)
T TIGR00595 139 PSLESYHNA 147 (505)
T ss_pred CCHHHHHHH
Confidence 987665543
No 233
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=2.4e-14 Score=143.72 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=103.7
Q ss_pred cCcHHHHHHHHHhhc-------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD-------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
+|+++|.+|+..+.. ++++++.+|||||||.+++..+..... ++++++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------------ceeEecCHHHHHHHHHHHH
Confidence 589999999999874 578999999999999998876655542 5999999999999999999
Q ss_pred HHHhhhcCCce----------eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC----------ccCCCccEE
Q psy15524 78 TKLCKSFTWIV----------PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET----------LKFSKVEHL 137 (930)
Q Consensus 78 ~~~~~~~~~~~----------~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~----------~~l~~l~~v 137 (930)
..+........ .....................+++++|...+......... ......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 76654321110 0011111122222333345688999999999877653211 223567899
Q ss_pred EEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 138 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 138 ViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
|+||||++....- +..++. .+...+++|||||.
T Consensus 151 I~DEaH~~~~~~~---~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH-----SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc-----CCCCeEEEEEeCcc
Confidence 9999999865441 233333 44568999999985
No 234
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.56 E-value=1.1e-13 Score=132.14 Aligned_cols=144 Identities=40% Similarity=0.544 Sum_probs=106.2
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 509 (930)
+++++.+|||+|||.+++..+...... ....+++|++|++.++.|+.+.+...... ......+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhH
Confidence 468999999999999988888876653 23568999999999999999999887754 344555666655554
Q ss_pred HHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 510 ~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
.......+.+|+++|++.+...+.... .....++++|+||+|.+....+....... ........+++++|||+
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~---~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKI---LLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHH---HhhCCccceEEEEeccC
Confidence 444556789999999999987776532 33567899999999999876654432111 11223477899999996
No 235
>COG4889 Predicted helicase [General function prediction only]
Probab=99.54 E-value=1.5e-14 Score=161.31 Aligned_cols=322 Identities=19% Similarity=0.238 Sum_probs=181.9
Q ss_pred CCCCCCHHHHHhHHhhhcC---Cc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 411 NITQVTTVQQLSIQPILDG---GD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~---~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.-..|+|+|+.||....+| +| -=+.+.+|+|||++. +-+.+.+. ..++|+++|+.+|..|..+.|
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala----------~~~iL~LvPSIsLLsQTlrew 226 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALA----------AARILFLVPSISLLSQTLREW 226 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHh----------hhheEeecchHHHHHHHHHHH
Confidence 4568999999999998876 12 445677899999984 45555543 256999999999999999988
Q ss_pred HHhhccCCCcceEEEeCCCch-----------------------HHHHH--HHhcCCcEEEECchhHHHhhhccCCcccc
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKM-----------------------KSEKA--RIRKGISILVATPGRLLDHCKHTETLKFS 541 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~-----------------------~~~~~--~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~ 541 (930)
..-..- . +.+..++.+.+. .+.+. +-..+.-|+++|...+...-.. ...-+.
T Consensus 227 ~~~~~l-~-~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~ 303 (1518)
T COG4889 227 TAQKEL-D-FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLD 303 (1518)
T ss_pred hhccCc-c-ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCC
Confidence 764321 1 122222222111 11111 1123456899998887554332 234578
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHh--hcCccceEEEEccccCH---HHHHH-----------------------
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILK--KQKPQFQSILLSATLTP---AVQRL----------------------- 593 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~--~~~~~~q~vl~SAT~~~---~~~~l----------------------- 593 (930)
.++++|.|||||-........-..-...+. +.-...+.+.++||+.- ..+.-
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 899999999999653221100000000000 00002234677888631 11111
Q ss_pred -------HhhhcCCCEEEE-ccCCCCcccCccceecCCCceEEEEEcCch------hhHHHHHHHHHhhccCC-------
Q psy15524 594 -------AGMTLQNPIQID-AADSTDIHNTTDSLVIPDSLKQHFIVTPPK------LRLVALASFILGKCQNV------- 652 (930)
Q Consensus 594 -------~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~~~------- 652 (930)
.+-.+.+...+. ..+...+ ...+.....-.... .+......-+.......
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i---------~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~ 454 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVI---------AGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIK 454 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhh---------hhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCc
Confidence 111111111111 0000000 00000000000001 11111111121111100
Q ss_pred -CcCCCceEEEEecchhhHHHHHHHHhhhcC----------CC--ceEEEecCCCCHHHHHHHHH---HhhcCCCcEEEe
Q psy15524 653 -NEDEESKMLVFMATQDMADYHTELLSTVLG----------EN--IAFFKLHGSMSQSERTEVFK---TFRSVKSGVLIC 716 (930)
Q Consensus 653 -~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~----------~~--~~~~~lhg~~~~~~R~~v~~---~F~~~~~~vLv~ 716 (930)
...+-.+.|-||.+.+....+++.+..... ++ +.+-...|.|...+|...+. .|...+++||--
T Consensus 455 ~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSN 534 (1518)
T COG4889 455 ADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSN 534 (1518)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeecc
Confidence 011235789999999888777666544321 23 44555678999999955443 356678889999
Q ss_pred ccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC
Q psy15524 717 TDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755 (930)
Q Consensus 717 T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 755 (930)
-..+++|+|+|..+-||.+++-.+..+.+|-+||..|-.
T Consensus 535 aRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 535 ARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred chhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999953
No 236
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.54 E-value=1.8e-13 Score=130.57 Aligned_cols=144 Identities=41% Similarity=0.557 Sum_probs=107.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 100 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 100 (930)
+++++.+|||+|||..++..+.+.... ....+++|++|++.++.|+.+.+...... ......+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhH
Confidence 478999999999999999888877654 12456999999999999999999888764 355666666665555
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 101 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 101 ~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.........+|+++|++.+...+.. ........+++||||+|.+......... ...........+++++||||
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~iiiDE~h~~~~~~~~~~~---~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELER-LKLSLKKLDLLILDEAHRLLNQGFGLLG---LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHc-CCcchhcCCEEEEeCHHHHhhcchHHHH---HHHHhhCCccceEEEEeccC
Confidence 5455566789999999999887765 2334567899999999999876544332 11222234567899999997
No 237
>KOG0950|consensus
Probab=99.53 E-value=3.4e-14 Score=161.99 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=134.1
Q ss_pred CCccCcHHHHHHH--HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSI--QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 2 g~~~l~~~Q~~ai--~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
|+..++.||.+|+ +.++.++|++..+||+.|||++.-+-++..+...++ .++.+.|..+.+..-...+..
T Consensus 220 gi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--------~~llilp~vsiv~Ek~~~l~~ 291 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--------NVLLILPYVSIVQEKISALSP 291 (1008)
T ss_pred hHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--------ceeEecceeehhHHHHhhhhh
Confidence 6678899999998 668899999999999999999999988888776433 389999999999999999988
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-CCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-ETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
+....+ +.+..++|....... .+.-++.|||.|+.....++. ..-.+..+++|||||.|.+.+.+++..++.++
T Consensus 292 ~~~~~G-~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l 366 (1008)
T KOG0950|consen 292 FSIDLG-FPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLL 366 (1008)
T ss_pred hccccC-CcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHH
Confidence 888777 666666665543322 334679999999987665532 22347789999999999999999999999999
Q ss_pred HHHhhcC--CCceEEEEEeecCCC
Q psy15524 159 EILKKQK--PQFQSILLSATLTPA 180 (930)
Q Consensus 159 ~~l~~~~--~~~~~i~lSAT~~~~ 180 (930)
..+...+ ..+|+||+|||+++-
T Consensus 367 ~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 367 AKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred HHHHHhccccceeEeeeecccCCh
Confidence 8887544 347799999999873
No 238
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.52 E-value=6e-14 Score=140.78 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=101.7
Q ss_pred CCCHHHHHhHHhhhc-------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILD-------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~-------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
+++++|.+++..+.. ++.+++.+|||||||.+++..+.+... ++++++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------------ceeEecCHHHHHHHHHHHH
Confidence 578999999999884 578999999999999997765554431 6999999999999999999
Q ss_pred HHhhccCCCcce----------EEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC----------CcccccceEE
Q psy15524 487 TKLCKSFTWIVP----------SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE----------TLKFSKVEHL 546 (930)
Q Consensus 487 ~~~~~~~~~~~~----------~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~----------~~~~~~l~~l 546 (930)
..+......... ....................+++++|..+|........ .......++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 666543211100 01111111112222234568899999999977654311 1234567899
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
|+||||++....- ...++. .....+++||||+.
T Consensus 151 I~DEaH~~~~~~~---~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDSS---YREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHHH---HHHHHH-----SSCCEEEEEESS-S
T ss_pred EEehhhhcCCHHH---HHHHHc-----CCCCeEEEEEeCcc
Confidence 9999998875441 333333 23667899999985
No 239
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.51 E-value=9e-13 Score=160.55 Aligned_cols=145 Identities=23% Similarity=0.300 Sum_probs=85.4
Q ss_pred HHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcc----cHHHHHHHHHHHHHHhhhcC
Q psy15524 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP----TRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 10 Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P----~~~L~~q~~~~~~~~~~~~~ 85 (930)
-.+.+.++..+..++++|+||||||. .+|.+-.-.. ......+++.-| +++||.++.+++......
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~-- 148 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG------RGVKGLIGHTQPRRLAARTVANRIAEELETELGG-- 148 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc--
Confidence 34455556566678899999999999 5774322110 011123444457 467888888777643221
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccc-cccccCcHHHHHHHHHHHhhc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h-~~~~~~~~~~~~~i~~~l~~~ 164 (930)
.++.- ..... ....+++|+|+||++|++.+... ..++++++||||||| ++++.+|... ++..+...
T Consensus 149 --~VGY~---vrf~~---~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg---~Lk~lL~~ 215 (1294)
T PRK11131 149 --CVGYK---VRFND---QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILG---YLKELLPR 215 (1294)
T ss_pred --eecee---ecCcc---ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHH---HHHHhhhc
Confidence 11111 11111 12356899999999999998753 338999999999999 5777766432 12222122
Q ss_pred CCCceEEEEEeec
Q psy15524 165 KPQFQSILLSATL 177 (930)
Q Consensus 165 ~~~~~~i~lSAT~ 177 (930)
.++.|+|++|||+
T Consensus 216 rpdlKvILmSATi 228 (1294)
T PRK11131 216 RPDLKVIITSATI 228 (1294)
T ss_pred CCCceEEEeeCCC
Confidence 2344555555555
No 240
>KOG0392|consensus
Probab=99.51 E-value=2.7e-12 Score=148.84 Aligned_cols=339 Identities=19% Similarity=0.216 Sum_probs=207.0
Q ss_pred CCCHHHHHhHHhhh--c--CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPIL--D--GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il--~--~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.++.+|++.++.+. + +=+-|+|-..|-||||..+--+....+..+.+...-.....|||||. .|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 35678998877643 3 23689999999999997544444333333222222234458999996 8999999999988
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
+.. +.+...+|+...+...+.-.++.+|+|++++-+.+-... +.-..+.|.|+||-|-|-+. ...+...++.
T Consensus 1054 ~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1054 FPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred cch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHH
Confidence 754 444445666544444444445679999998766422211 12245789999999977433 2333444444
Q ss_pred HhhcCccceEEEEccccC-HHHHHHHh---h-------------------------------------------------
Q psy15524 570 LKKQKPQFQSILLSATLT-PAVQRLAG---M------------------------------------------------- 596 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~-~~~~~l~~---~------------------------------------------------- 596 (930)
+.. + ..+.+|.|+- +.+.++-. .
T Consensus 1126 L~a---~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLP 1201 (1549)
T KOG0392|consen 1126 LRA---N-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLP 1201 (1549)
T ss_pred Hhh---c-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHH
Confidence 432 3 3466788842 11111100 0
Q ss_pred ---------hcCC-C-EEEEccC------------------------CCCcccCccc---------eecCCCceE--EEE
Q psy15524 597 ---------TLQN-P-IQIDAAD------------------------STDIHNTTDS---------LVIPDSLKQ--HFI 630 (930)
Q Consensus 597 ---------~~~~-~-~~i~~~~------------------------~~~~~~~~~~---------~~~~~~~~~--~~~ 630 (930)
.+.+ | ..|.-+. ..+....... ...-..+.. ..+
T Consensus 1202 F~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLv 1281 (1549)
T KOG0392|consen 1202 FLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALV 1281 (1549)
T ss_pred HHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCccee
Confidence 0000 1 0000000 0000000000 000000000 011
Q ss_pred Ec-----------------------CchhhHHHHHHHHHhhccCCCc-C---------CCceEEEEecchhhHHHHHHHH
Q psy15524 631 VT-----------------------PPKLRLVALASFILGKCQNVNE-D---------EESKMLVFMATQDMADYHTELL 677 (930)
Q Consensus 631 ~~-----------------------~~~~~~~~l~~~l~~~~~~~~~-~---------~~~k~iVF~~s~~~~~~~~~~l 677 (930)
.. ....|+.+|..+|... .--++ . .+++++|||.-+.+.+.+.+-|
T Consensus 1282 lt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eC-Gig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL 1360 (1549)
T KOG0392|consen 1282 LTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSEC-GIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDL 1360 (1549)
T ss_pred eCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHh-CCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHH
Confidence 11 1123555666655542 11111 1 3679999999999999887666
Q ss_pred hhhcCCCceEEEecCCCCHHHHHHHHHHhhcC-CCcE-EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC
Q psy15524 678 STVLGENIAFFKLHGSMSQSERTEVFKTFRSV-KSGV-LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~-~~~v-Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 755 (930)
-+-.-+.+.++.+.|..++.+|.++.++|.++ .++| |++|-|.+-|+|+.+.|.||.++-.++|..-+|.+-||.|.|
T Consensus 1361 ~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIG 1440 (1549)
T KOG0392|consen 1361 FKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIG 1440 (1549)
T ss_pred hhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhc
Confidence 55444578889999999999999999999998 5666 577899999999999999999999999999999999999999
Q ss_pred CCceE--EEEeCc
Q psy15524 756 HEGSS--LLFLIP 766 (930)
Q Consensus 756 ~~g~~--~~~~~~ 766 (930)
++-.. +-+++.
T Consensus 1441 QKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1441 QKRVVNVYRLITR 1453 (1549)
T ss_pred Cceeeeeeeehhc
Confidence 97554 344444
No 241
>KOG0953|consensus
Probab=99.50 E-value=5.8e-13 Score=142.85 Aligned_cols=280 Identities=19% Similarity=0.207 Sum_probs=169.5
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
++-++||.||||.- +++++.. ....++.-|.|-||.++++.+.+.+- -+.+++|.+......
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~---------aksGvycGPLrLLA~EV~~r~na~gi-----pCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKS---------AKSGVYCGPLRLLAHEVYDRLNALGI-----PCDLLTGEERRFVLD 255 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhh---------hccceecchHHHHHHHHHHHhhhcCC-----CccccccceeeecCC
Confidence 66789999999986 5666654 44579999999999999999988763 344566665432221
Q ss_pred HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHH-HHHHHHhhcCccceEEEEccccCHHH
Q psy15524 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA-EFLEILKKQKPQFQSILLSATLTPAV 590 (930)
Q Consensus 512 ~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~-~i~~~l~~~~~~~q~vl~SAT~~~~~ 590 (930)
. -..++.+-||-+... .-..+++.||||+++|-|...+-.+. .++....+ .....+=-|-+ +-+
T Consensus 256 ~--~~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad---EiHLCGepsvl-dlV 320 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD---EIHLCGEPSVL-DLV 320 (700)
T ss_pred C--CCcccceEEEEEEee---------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhh---hhhccCCchHH-HHH
Confidence 1 123567777755331 12357899999999998765442222 22222211 22211111111 223
Q ss_pred HHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhH
Q psy15524 591 QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA 670 (930)
Q Consensus 591 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~ 670 (930)
+.++.... +.+.+..+. ...+-.-...+..-+. +. ..+-++|-++ ++..
T Consensus 321 ~~i~k~TG-d~vev~~Ye----------------------Rl~pL~v~~~~~~sl~----nl---k~GDCvV~FS-kk~I 369 (700)
T KOG0953|consen 321 RKILKMTG-DDVEVREYE----------------------RLSPLVVEETALGSLS----NL---KPGDCVVAFS-KKDI 369 (700)
T ss_pred HHHHhhcC-CeeEEEeec----------------------ccCcceehhhhhhhhc----cC---CCCCeEEEee-hhhH
Confidence 33333322 122222111 0000000011111121 11 1556666554 4444
Q ss_pred HHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc--CCCcEEEeccccccccCCCCccEEEEecC---------CC
Q psy15524 671 DYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS--VKSGVLICTDVAARGLDLPLVDWIVQYTA---------PS 739 (930)
Q Consensus 671 ~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~--~~~~vLv~T~~~~~GlDip~v~~VI~~~~---------p~ 739 (930)
-.+...+.+.. +..+..++|+++++.|.+.-..|.+ ++.+||||||+.++|+|+ +++-||.++. |.
T Consensus 370 ~~~k~kIE~~g--~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~i 446 (700)
T KOG0953|consen 370 FTVKKKIEKAG--NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDI 446 (700)
T ss_pred HHHHHHHHHhc--CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceec
Confidence 45555555542 3347778999999999999999987 899999999999999999 7899998874 34
Q ss_pred ChhhHHhhhcccccCCC---CceEEEEeCcccHHHHHHHHhcC
Q psy15524 740 SSTDYVHRVGRTARVGH---EGSSLLFLIPSEVKLVEELQNRR 779 (930)
Q Consensus 740 s~~~y~qr~GRagR~g~---~g~~~~~~~~~e~~~~~~l~~~~ 779 (930)
+..+..|..|||||.|. .|....|- .++...+++..+..
T Consensus 447 t~sqikQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 447 TVSQIKQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRILKRP 488 (700)
T ss_pred cHHHHHHHhhcccccccCCcCceEEEee-HhhHHHHHHHHhCC
Confidence 67889999999999975 35444433 35566676666543
No 242
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=6.9e-13 Score=154.81 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=102.0
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHH-HHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPII-QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l-~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
.|++.|--..-.+..| -+..++||+|||+++.+|++ +.+ . |..+-|++||..||.|.++.+..+...
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~---------G~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNAL-T---------GKGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHH-c---------CCCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 4677787766656566 49999999999999999996 444 2 334779999999999999999999987
Q ss_pred cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCCC-----ccCCCccEEEEccccccc
Q psy15524 84 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTET-----LKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~~-----~~l~~l~~vViDE~h~~~ 146 (930)
++ +.++++.|+.+........ .+||++|||.++ .++++..-. ..++.+.++||||||.|+
T Consensus 149 LG-lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 149 LG-LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred cC-CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 77 8888899887776665553 489999999999 888875322 236789999999999875
No 243
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.48 E-value=5.7e-12 Score=151.85 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC-cEEEe
Q psy15524 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS-GVLIC 716 (930)
Q Consensus 638 ~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~-~vLv~ 716 (930)
...+...+....... +++++|||+|.+..+.+.+.+...... -....+|.. .+...++.|+.+.- .++|+
T Consensus 464 ~~~~~~~i~~~~~~~----~~~~lvlF~Sy~~l~~~~~~~~~~~~~--~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~ 534 (654)
T COG1199 464 LAKLAAYLREILKAS----PGGVLVLFPSYEYLKRVAERLKDERST--LPVLTQGED---EREELLEKFKASGEGLILVG 534 (654)
T ss_pred HHHHHHHHHHHHhhc----CCCEEEEeccHHHHHHHHHHHhhcCcc--ceeeecCCC---cHHHHHHHHHHhcCCeEEEe
Confidence 344444444433322 569999999999999999998864211 123345554 44578888887655 89999
Q ss_pred ccccccccCCCCc--cEEEEecCCC------------------------------ChhhHHhhhcccccCCCCceEEEEe
Q psy15524 717 TDVAARGLDLPLV--DWIVQYTAPS------------------------------SSTDYVHRVGRTARVGHEGSSLLFL 764 (930)
Q Consensus 717 T~~~~~GlDip~v--~~VI~~~~p~------------------------------s~~~y~qr~GRagR~g~~g~~~~~~ 764 (930)
|..+++|+|+|+- ..||...+|. -.....|-+||.-|.-.+...++++
T Consensus 535 ~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 535 GGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred eccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999999999865 6788777664 1235679999999966554444444
Q ss_pred Cc
Q psy15524 765 IP 766 (930)
Q Consensus 765 ~~ 766 (930)
..
T Consensus 615 D~ 616 (654)
T COG1199 615 DK 616 (654)
T ss_pred cc
Confidence 43
No 244
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.46 E-value=5e-11 Score=142.20 Aligned_cols=119 Identities=21% Similarity=0.318 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc----CCCcE
Q psy15524 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS----VKSGV 713 (930)
Q Consensus 638 ~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~----~~~~v 713 (930)
...+...+...+. . .+.++||++|.+..+.+++.+.... +..++ .+|.. .|..+++.|++ ++..|
T Consensus 520 ~~~~~~~i~~l~~-~----~gg~LVlFtSy~~l~~v~~~l~~~~--~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~~~V 588 (697)
T PRK11747 520 TAEMAEFLPELLE-K----HKGSLVLFASRRQMQKVADLLPRDL--RLMLL-VQGDQ---PRQRLLEKHKKRVDEGEGSV 588 (697)
T ss_pred HHHHHHHHHHHHh-c----CCCEEEEeCcHHHHHHHHHHHHHhc--CCcEE-EeCCc---hHHHHHHHHHHHhccCCCeE
Confidence 3455555555443 1 4568999999999999998887532 23333 35642 46778877764 67789
Q ss_pred EEeccccccccCCCC--ccEEEEecCCC----Ch--------------------------hhHHhhhcccccCCCCceEE
Q psy15524 714 LICTDVAARGLDLPL--VDWIVQYTAPS----SS--------------------------TDYVHRVGRTARVGHEGSSL 761 (930)
Q Consensus 714 Lv~T~~~~~GlDip~--v~~VI~~~~p~----s~--------------------------~~y~qr~GRagR~g~~g~~~ 761 (930)
|++|..+++|||+|+ +++||....|. ++ ..+.|-+||.-|...+-..+
T Consensus 589 L~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i 668 (697)
T PRK11747 589 LFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRV 668 (697)
T ss_pred EEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEE
Confidence 999999999999986 67888877663 11 13468889999987664455
Q ss_pred EEeCcc
Q psy15524 762 LFLIPS 767 (930)
Q Consensus 762 ~~~~~~ 767 (930)
+++.++
T Consensus 669 ~ilD~R 674 (697)
T PRK11747 669 TILDRR 674 (697)
T ss_pred EEEccc
Confidence 555543
No 245
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.45 E-value=3.6e-13 Score=155.82 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=133.2
Q ss_pred ccCcHHHHHHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDG----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
..+++.|+.|+..+.+. ...|+.+.||||||.+|+-.+.+.+.. |.++|+|+|.++|..|+.++|+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHH
Confidence 46899999999998765 569999999999999999988888765 66799999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc---cCcHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD---QGYERDIAE 156 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~---~~~~~~~~~ 156 (930)
.+..-..+.++.++.+.....|.+...+..+|+||| ++.-+.++.++++|||||-|.-.- ++.+... +
T Consensus 268 rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhA-R 338 (730)
T COG1198 268 RFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHA-R 338 (730)
T ss_pred HhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhhcCchhhccEEEEeccccccccCCcCCCcCH-H
Confidence 988655567777777777888888888889999999 555566799999999999996432 1222121 2
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccc
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLK 191 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~ 191 (930)
=+..++....++++|+-||||+-++......+...
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~ 373 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPSLESYANAESGKYK 373 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceE
Confidence 23334444567789999999998876665444333
No 246
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.45 E-value=2e-12 Score=159.10 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=103.1
Q ss_pred cCcHHHHHHHHHhh----cC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|+++|.+||.++. .| ++.|+++|||||||.+++..+ ..+... ....++|||+|+++|+.|..+.|..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~------~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKA------KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhc------CccCeEEEEecHHHHHHHHHHHHHh
Confidence 58999999998775 23 579999999999999855444 444331 2235799999999999999999988
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC----CCccCCCccEEEEcccccccc------c-
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT----ETLKFSKVEHLVLDEADRILD------Q- 148 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~----~~~~l~~l~~vViDE~h~~~~------~- 148 (930)
...... ......++...... .......+|+|+|...+...+... ....+.++++|||||||+-.. .
T Consensus 486 ~~~~~~-~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEGD-QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred cccccc-cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 642211 01100111110010 112234789999999987764321 124568899999999998521 0
Q ss_pred --Cc------HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 149 --GY------ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 149 --~~------~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+| ...++.++... +...|||||||..
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF-----dA~~IGLTATP~r 596 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF-----DAVKIGLTATPAL 596 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc-----CccEEEEecCCcc
Confidence 11 23444555432 3468999999964
No 247
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.45 E-value=2.4e-12 Score=152.08 Aligned_cols=162 Identities=23% Similarity=0.267 Sum_probs=129.9
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
|+|+ -||-|..||..+.+. .|-|+|+--|-|||.+++-++...+.. |.+|.|||||--||+|-+
T Consensus 591 FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQVAvLVPTTlLA~QHy 660 (1139)
T COG1197 591 FPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---------GKQVAVLVPTTLLAQQHY 660 (1139)
T ss_pred CCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---------CCeEEEEcccHHhHHHHH
Confidence 4564 699999999998753 489999999999999999988877743 788999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHHHHh---c-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARI---R-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.|++.+.+++ +++..++.=.+.+++...+ . +..||||||- .++. ..+.+++++++||||-|+..=
T Consensus 661 ~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~--kdv~FkdLGLlIIDEEqRFGV--- 730 (1139)
T COG1197 661 ETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLS--KDVKFKDLGLLIIDEEQRFGV--- 730 (1139)
T ss_pred HHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhC--CCcEEecCCeEEEechhhcCc---
Confidence 99999999988 7888777766666665443 3 4599999994 3333 567799999999999998641
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCCCccccccc
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHT 187 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~ 187 (930)
.--++++..+.++.++-|||||-|++..+...
T Consensus 731 -----k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~ 762 (1139)
T COG1197 731 -----KHKEKLKELRANVDVLTLSATPIPRTLNMSLS 762 (1139)
T ss_pred -----cHHHHHHHHhccCcEEEeeCCCCcchHHHHHh
Confidence 11345566667889999999999988766543
No 248
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.45 E-value=2.8e-13 Score=115.80 Aligned_cols=80 Identities=46% Similarity=0.775 Sum_probs=74.1
Q ss_pred HHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccc
Q psy15524 673 HTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTA 752 (930)
Q Consensus 673 ~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRag 752 (930)
+++.|... ++.+..+||+++..+|..+++.|.++...||++|+++++|+|+|++++||.+++|.+..+|.|++||++
T Consensus 3 l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 3 LAELLKEL---GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHC---CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 45556554 678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy15524 753 RVG 755 (930)
Q Consensus 753 R~g 755 (930)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 976
No 249
>KOG0389|consensus
Probab=99.44 E-value=5.8e-12 Score=140.52 Aligned_cols=140 Identities=18% Similarity=0.294 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC--cE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS--GV 713 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~--~v 713 (930)
.|...|..+|..... .+.+++||..-..+.+.+...|..+ ++.+..+.|...-.+|..+++.|...+. -+
T Consensus 761 gK~r~L~~LLp~~k~-----~G~RVLiFSQFTqmLDILE~~L~~l---~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVF 832 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKK-----KGDRVLIFSQFTQMLDILEVVLDTL---GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVF 832 (941)
T ss_pred hhHhHHHHHHHHHhh-----cCCEEEEeeHHHHHHHHHHHHHHhc---CceEEeecCCccchHHHHHHHhhccCCceEEE
Confidence 455555555544322 2689999999999999998888876 8999999999999999999999987653 36
Q ss_pred EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCc--eEEEEeCcccHH-HHHHHHhcCCccc
Q psy15524 714 LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEG--SSLLFLIPSEVK-LVEELQNRRIRIE 783 (930)
Q Consensus 714 Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g--~~~~~~~~~e~~-~~~~l~~~~~~~~ 783 (930)
|++|.+.+-|||+.+.++||.+|+..+|-+-.|.--||.|.|+.. ..+-+++.+-.+ .+.++.+.++.++
T Consensus 833 LLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le 905 (941)
T KOG0389|consen 833 LLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALE 905 (941)
T ss_pred EEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999999999999999999999854 445566666553 6777777766554
No 250
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.43 E-value=7.2e-12 Score=146.31 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=91.3
Q ss_pred cCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch---HHHHHH
Q psy15524 437 QTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKAR 513 (930)
Q Consensus 437 ~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~ 513 (930)
.+|||||.+|+-.+-+.+.. |..+||++|...|..|+.+.|+..+.. . .+..+.++.+. ...+..
T Consensus 168 ~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~-~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGA--G-DVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCC--C-cEEEECCCCCHHHHHHHHHH
Confidence 35999999988877776654 778999999999999999999987741 1 23334444332 223344
Q ss_pred HhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC------cHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 514 IRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG------YERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 514 ~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g------~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
+..| ..|+|+|- +.-...+.++.+||+||-|.-.-.. ...++....... .+..+++.|||+
T Consensus 236 ~~~G~~~IViGtR--------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~----~~~~lvLgSaTP 303 (665)
T PRK14873 236 VLRGQARVVVGTR--------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ----HGCALLIGGHAR 303 (665)
T ss_pred HhCCCCcEEEEcc--------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH----cCCcEEEECCCC
Confidence 4444 78999993 3223468899999999999543211 113344333333 378899999999
Q ss_pred CHHHHHHHh
Q psy15524 587 TPAVQRLAG 595 (930)
Q Consensus 587 ~~~~~~l~~ 595 (930)
+-+....+.
T Consensus 304 Sles~~~~~ 312 (665)
T PRK14873 304 TAEAQALVE 312 (665)
T ss_pred CHHHHHHHh
Confidence 866554443
No 251
>KOG1000|consensus
Probab=99.42 E-value=4.6e-11 Score=126.53 Aligned_cols=322 Identities=17% Similarity=0.221 Sum_probs=198.8
Q ss_pred CCCHHHHHhHHhhh-cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhcc
Q psy15524 414 QVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492 (930)
Q Consensus 414 ~~~~iQ~~~i~~il-~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 492 (930)
.+.|+|.+.+...+ .|..+++.-..|-|||+.++ ++...... ....||+||. .|-..|.+.+..++..
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyra---------EwplliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYRA---------EWPLLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHhh---------cCcEEEEecH-HHhHHHHHHHHHhccc
Confidence 34578999888766 46679999999999999743 33333322 2237899996 6777788888888764
Q ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 493 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
... ..++.++.+.... +.....|.|.+.+.+..+ .. .+....+.++|+||.|.+-+.. ......++..+..
T Consensus 267 ~~p--i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l-~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ 337 (689)
T KOG1000|consen 267 IHP--IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLL-HD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKV 337 (689)
T ss_pred ccc--eEEEecccCCccc---cccCCeEEEEEHHHHHHH-HH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHH
Confidence 433 2334444433221 122346888887766433 22 2334558999999999775443 3334444444443
Q ss_pred cCccceEEEEccccCH-------------------HHHHHHhhhcCC---CEEEEccCCCCcccC---------------
Q psy15524 573 QKPQFQSILLSATLTP-------------------AVQRLAGMTLQN---PIQIDAADSTDIHNT--------------- 615 (930)
Q Consensus 573 ~~~~~q~vl~SAT~~~-------------------~~~~l~~~~~~~---~~~i~~~~~~~~~~~--------------- 615 (930)
-.+++++|.|+.- ...+++..+... +...+..+.......
T Consensus 338 ---akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~ 414 (689)
T KOG1000|consen 338 ---AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKA 414 (689)
T ss_pred ---hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4578999999631 111222222111 111121111110000
Q ss_pred ccceecCCCceEEEEEcCch-------------------------------------hhHHHHHHHHHhhccCCCcCCCc
Q psy15524 616 TDSLVIPDSLKQHFIVTPPK-------------------------------------LRLVALASFILGKCQNVNEDEES 658 (930)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~l~~~l~~~~~~~~~~~~~ 658 (930)
.--...|..-++..+.+... .|.....+.+..+.- ....++.
T Consensus 415 dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~-l~d~~~~ 493 (689)
T KOG1000|consen 415 DVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYF-LPDAPPR 493 (689)
T ss_pred HHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcc-cccCCCc
Confidence 00001233322222222111 011112222221100 1234578
Q ss_pred eEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCC-CcE-EEeccccccccCCCCccEEEEec
Q psy15524 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVK-SGV-LICTDVAARGLDLPLVDWIVQYT 736 (930)
Q Consensus 659 k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~-~~v-Lv~T~~~~~GlDip~v~~VI~~~ 736 (930)
|.+||+......+-+...+.+. +++...+.|..+..+|....+.|+.++ .+| +++-.+++.|+++.+.+.|+...
T Consensus 494 KflVFaHH~~vLd~Iq~~~~~r---~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 494 KFLVFAHHQIVLDTIQVEVNKR---KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred eEEEEehhHHHHHHHHHHHHHc---CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 9999999999999888888874 899999999999999999999999653 443 56667889999999999999999
Q ss_pred CCCChhhHHhhhcccccCCCCceEEE
Q psy15524 737 APSSSTDYVHRVGRTARVGHEGSSLL 762 (930)
Q Consensus 737 ~p~s~~~y~qr~GRagR~g~~g~~~~ 762 (930)
.++++.-.+|-=-|+.|.|+.....+
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred ecCCCceEEechhhhhhccccceeeE
Confidence 99999999999999999998655433
No 252
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.42 E-value=1.1e-11 Score=145.43 Aligned_cols=345 Identities=21% Similarity=0.231 Sum_probs=189.4
Q ss_pred CCCHHHHHhHHhhhc----CCc----EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILD----GGD----VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~----~~d----~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
.-..+|-+|...+.. ..+ ++--|.||+|||++=. -|+..|.. ...|.+..|-.-.|.|-.|+-+.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd------~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRD------DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCC------CCCCceEEEEccccceeccchHH
Confidence 345789999888764 222 5668999999999733 23333322 24577888888889999998888
Q ss_pred HHHhhccCCCcceEEEeCCCchHHH-------------------------------------------HHHHh-------
Q psy15524 486 FTKLCKSFTWIVPSWLTGGEKMKSE-------------------------------------------KARIR------- 515 (930)
Q Consensus 486 ~~~~~~~~~~~~~~~~~gg~~~~~~-------------------------------------------~~~~~------- 515 (930)
+++.++- ......+++||...... ...+.
T Consensus 481 ~r~rL~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 481 LKTRLNL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHhcCC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 8776532 22223333443211100 00000
Q ss_pred -cCCcEEEECchhHHHhhhccC--Ccccc--c--ceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 516 -KGISILVATPGRLLDHCKHTE--TLKFS--K--VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 516 -~~~~Ilv~Tp~rl~~~l~~~~--~~~~~--~--l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
-...++|||+..++-...... ...+. . =+.|||||+|.+-... ...+.++++.+... +.+++++|||+|+
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~l--G~~VlLmSATLP~ 636 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLL--GSRVLLSSATLPP 636 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHc--CCCEEEEeCCCCH
Confidence 024699999999876653211 11111 1 2469999999774333 24455555544432 6789999999998
Q ss_pred HHHH-HHhhh----------cC---CCEEEE--ccCCCCc-----ccC--------------ccce-ecCCCceEEEEEc
Q psy15524 589 AVQR-LAGMT----------LQ---NPIQID--AADSTDI-----HNT--------------TDSL-VIPDSLKQHFIVT 632 (930)
Q Consensus 589 ~~~~-l~~~~----------~~---~~~~i~--~~~~~~~-----~~~--------------~~~~-~~~~~~~~~~~~~ 632 (930)
.+.. +...+ .. .+..|. ..++... ... .... .-|..-.-..+.+
T Consensus 637 ~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~ 716 (1110)
T TIGR02562 637 ALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSL 716 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeec
Confidence 7433 22222 11 122111 1111000 000 0000 0111111122222
Q ss_pred Cch-----hhHHHHHHHHHh-----hccCCCcC--CCceE---EEEecchhhHHHHHHHHhhhcC-C--CceEEEecCCC
Q psy15524 633 PPK-----LRLVALASFILG-----KCQNVNED--EESKM---LVFMATQDMADYHTELLSTVLG-E--NIAFFKLHGSM 694 (930)
Q Consensus 633 ~~~-----~~~~~l~~~l~~-----~~~~~~~~--~~~k~---iVF~~s~~~~~~~~~~l~~~~~-~--~~~~~~lhg~~ 694 (930)
+.. .....+...+.+ +....... .++++ +|-+++++.+-.++..|-.... . .+.++.||+..
T Consensus 717 ~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~ 796 (1110)
T TIGR02562 717 SSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQD 796 (1110)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccC
Confidence 222 122223332221 11111111 12332 5666666666555555544332 2 35688899999
Q ss_pred CHHHHHHHHHHh----------------------hc----CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhh
Q psy15524 695 SQSERTEVFKTF----------------------RS----VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748 (930)
Q Consensus 695 ~~~~R~~v~~~F----------------------~~----~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~ 748 (930)
....|..+++.. .+ +...|+|+|++.+.|+|+ +.+++| .-|.+....+||.
T Consensus 797 ~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~a 873 (1110)
T TIGR02562 797 PLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLA 873 (1110)
T ss_pred hHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHh
Confidence 888888777553 11 356799999999999998 466655 3466789999999
Q ss_pred cccccCCC--CceEEEEeCcccHHHH
Q psy15524 749 GRTARVGH--EGSSLLFLIPSEVKLV 772 (930)
Q Consensus 749 GRagR~g~--~g~~~~~~~~~e~~~~ 772 (930)
||+.|.|. .+..-+++...+...+
T Consensus 874 GR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 874 GRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred hcccccccCCCCCCcEEEeHhHHHHh
Confidence 99999876 2444556666666555
No 253
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.40 E-value=2.1e-11 Score=123.82 Aligned_cols=145 Identities=23% Similarity=0.245 Sum_probs=106.5
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+|.|+.+-..++ ..+++|++|-||+|||....-.+.+.+. .|..+.+.+|....|.+++.+++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---------cCCeEEEecCcccchHHHHHHHHHh
Confidence 68999999887755 4679999999999999985555555543 3778999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.. ..+.+++|+...... .+++|+|..+|+.+-. .++++||||+|...-.. .+.+...+..
T Consensus 168 F~~---~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~-d~~L~~Av~~ 228 (441)
T COG4098 168 FSN---CDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSD-DQSLQYAVKK 228 (441)
T ss_pred hcc---CCeeeEecCCchhcc-------ccEEEEehHHHHHHHh--------hccEEEEeccccccccC-CHHHHHHHHH
Confidence 765 446678887754422 5799999998887754 48999999999764211 1223333332
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
.+ ...-..|.+|||++.
T Consensus 229 ar--k~~g~~IylTATp~k 245 (441)
T COG4098 229 AR--KKEGATIYLTATPTK 245 (441)
T ss_pred hh--cccCceEEEecCChH
Confidence 22 223468899999864
No 254
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.37 E-value=2.4e-11 Score=148.87 Aligned_cols=148 Identities=21% Similarity=0.224 Sum_probs=89.8
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEE
Q psy15524 12 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 91 (930)
Q Consensus 12 ~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 91 (930)
+.+..+..+..++++|+||||||. .+|.+-.- . . .....++++.-|.+--|..+++++.+....-....++.
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle-~-~----~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY 145 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLE-L-G----RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGY 145 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHH-c-C----CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEee
Confidence 444555566778999999999999 45644221 1 1 11123566777988888888877666543211122222
Q ss_pred eeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccc-cccccCcHHHHHHHHHHHhhcCCCceE
Q psy15524 92 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEAD-RILDQGYERDIAEFLEILKKQKPQFQS 170 (930)
Q Consensus 92 ~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h-~~~~~~~~~~~~~i~~~l~~~~~~~~~ 170 (930)
-...++ . .....+|.++||++|+..+... -.+.++++|||||+| +.++.++.-. ++..+-...++.++
T Consensus 146 ~vR~~~---~---~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~---lLk~il~~rpdLKl 214 (1283)
T TIGR01967 146 KVRFHD---Q---VSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLG---YLKQLLPRRPDLKI 214 (1283)
T ss_pred EEcCCc---c---cCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHH---HHHHHHhhCCCCeE
Confidence 111111 1 2345789999999999988653 247899999999999 4777665432 12222222345566
Q ss_pred EEEEeecC
Q psy15524 171 ILLSATLT 178 (930)
Q Consensus 171 i~lSAT~~ 178 (930)
|++|||++
T Consensus 215 IlmSATld 222 (1283)
T TIGR01967 215 IITSATID 222 (1283)
T ss_pred EEEeCCcC
Confidence 66666663
No 255
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=2.7e-10 Score=137.28 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=61.2
Q ss_pred cCCCCCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
.|.|..++|.|.+.+..+. .++++++.||||+|||++.+.|++...... +...+++|.+.|..=..|..+
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~------~~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK------PEVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc------cccccEEEEcccchHHHHHHH
Confidence 4788888999998776655 578899999999999999999999876542 223678999999988888888
Q ss_pred HHHHh
Q psy15524 485 IFTKL 489 (930)
Q Consensus 485 ~~~~~ 489 (930)
++++.
T Consensus 79 Elk~~ 83 (705)
T TIGR00604 79 ELRKL 83 (705)
T ss_pred HHHhh
Confidence 88874
No 256
>KOG0384|consensus
Probab=99.35 E-value=9.1e-12 Score=145.20 Aligned_cols=340 Identities=17% Similarity=0.232 Sum_probs=203.8
Q ss_pred CCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.+++.+|-..++.++ .++++|+.-..|-|||+. .+..|..+.... .-.|+ .|||+|.-. +.-|.+.|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~----~~~gp-flvvvplst-~~~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL----QIHGP-FLVVVPLST-ITAWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh----hccCC-eEEEeehhh-hHHHHHHHHH
Confidence 578889998887765 578899999999999985 333333333211 01244 688889744 4457777777
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHH----hc-----CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCc
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARI----RK-----GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 559 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~----~~-----~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~ 559 (930)
+. .+ .+.+..|....+...+.. .. ..+++++|.+.++.-... +.--...++++|||||+-+..
T Consensus 442 w~-~m---n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~- 513 (1373)
T KOG0384|consen 442 WT-DM---NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDE- 513 (1373)
T ss_pred Hh-hh---ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchH-
Confidence 66 33 233445544333322221 11 378999998877543222 222346789999999996432
Q ss_pred HHHHHHHHHHHhhcCccceEEEEccccC-HHHHHHHhhh-cCCC------------------------------------
Q psy15524 560 ERDIAEFLEILKKQKPQFQSILLSATLT-PAVQRLAGMT-LQNP------------------------------------ 601 (930)
Q Consensus 560 ~~~l~~i~~~l~~~~~~~q~vl~SAT~~-~~~~~l~~~~-~~~~------------------------------------ 601 (930)
..+...+..+. .-..+++|.|+- +.+.+|.... +-.|
T Consensus 514 -~~l~~~l~~f~----~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 514 -SKLYESLNQFK----MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred -HHHHHHHHHhc----ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHH
Confidence 22222233332 223477788853 2233332211 0000
Q ss_pred ------------EE-EEccCC--------------------CCcccCccce----ecCCCceEEEEEcCchhhH------
Q psy15524 602 ------------IQ-IDAADS--------------------TDIHNTTDSL----VIPDSLKQHFIVTPPKLRL------ 638 (930)
Q Consensus 602 ------------~~-i~~~~~--------------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------ 638 (930)
.. +.+.-. .........+ -...--.+.|.+-+.+.+.
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~ 668 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD 668 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh
Confidence 00 000000 0000000000 0000011222222222111
Q ss_pred ----HHHHHHHHhh--------ccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 639 ----VALASFILGK--------CQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 639 ----~~l~~~l~~~--------~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
..|..+|..- +-..-...+.+||||..-+.+.+.++++|... ++++-.|.|++..+-|+..++.|
T Consensus 669 ~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r---~ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 669 KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR---GYPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc---CCcceeccCCcchHHHHHHHHhc
Confidence 1222222110 00000124789999999999999999999874 89999999999999999999999
Q ss_pred hcC---CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCce--EEEEeCcc--cHHHHHHH
Q psy15524 707 RSV---KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGS--SLLFLIPS--EVKLVEEL 775 (930)
Q Consensus 707 ~~~---~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~--e~~~~~~l 775 (930)
.+. ....|+||.+.+-|||+...+.||.||..++|..-+|-.-||.|.|+... .+-|++.. |.+++++-
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA 821 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA 821 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH
Confidence 854 45689999999999999999999999999999999999999999999754 45566654 33444443
No 257
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=2e-11 Score=142.33 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=97.7
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
|++.|-- ..+.-...-+..++||.|||++|.+|++..... |..+.||+|+..||.|..+.+..+...++
T Consensus 83 ~ydVQli--Ggl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 83 HFDVQLL--GGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred cCchHHh--cchHhcCCccccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 4555554 333333456999999999999999999877654 33499999999999999999999998877
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcCCCcc-----CCCccEEEEcccccccc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTETLK-----FSKVEHLVLDEADRILD 147 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~~~~-----l~~l~~vViDE~h~~~~ 147 (930)
+.+++..++.+.... .-.-.+||++|||+.+ .++++..-.+. .+.+.+.||||+|.++-
T Consensus 152 -lsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 152 -LTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred -CeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 788888887665322 2223689999999999 78776531223 37899999999998764
No 258
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.30 E-value=1.8e-09 Score=118.30 Aligned_cols=302 Identities=18% Similarity=0.163 Sum_probs=205.1
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHhhccC-------------CCc----ceEE-EeCCCchHHHHHHHhc-----------
Q psy15524 466 GIYAVIILPTRELALQTLEIFTKLCKSF-------------TWI----VPSW-LTGGEKMKSEKARIRK----------- 516 (930)
Q Consensus 466 ~~~~lil~PtreLa~Q~~~~~~~~~~~~-------------~~~----~~~~-~~gg~~~~~~~~~~~~----------- 516 (930)
.++||||+|+|.-|.++.+.+.+++... +.. .... -........+...+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 5889999999999999999888776541 100 0000 0000111112222222
Q ss_pred --------------CCcEEEECchhHHHhhhcc-----CCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCc--
Q psy15524 517 --------------GISILVATPGRLLDHCKHT-----ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-- 575 (930)
Q Consensus 517 --------------~~~Ilv~Tp~rl~~~l~~~-----~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~-- 575 (930)
++|||||+|=-|-..+... ..-.+++++++|+|.||.++ |.-.+.+..+++.+...+.
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCCC
Confidence 3689999997776655531 12248999999999999776 4445566677777765432
Q ss_pred -------------------cceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEEEEcCc-
Q psy15524 576 -------------------QFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP- 634 (930)
Q Consensus 576 -------------------~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 634 (930)
-+|++++|+..++++..+......|.. .+.+...... ......+...++|.+...+.
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~--~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA--SGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc--ceeeeccccCCceEEEEecCC
Confidence 379999999999999999988666642 2222222111 01112234566777754332
Q ss_pred ------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 635 ------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 635 ------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+.++......+...... ....+.+|||++|--.--.+...|.+ .++.+..+|-..++.+-..+-..|..
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~--~~~~~~~LIfIPSYfDfVRlRN~lk~---~~~sF~~i~EYts~~~isRAR~~F~~ 348 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKR--DSKMSGTLIFIPSYFDFVRLRNYLKK---ENISFVQISEYTSNSDISRARSQFFH 348 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhh--ccCCCcEEEEecchhhhHHHHHHHHh---cCCeEEEecccCCHHHHHHHHHHHHc
Confidence 34555555544433331 23378999999998777777788875 48899999999999999999999999
Q ss_pred CCCcEEEecccc--ccccCCCCccEEEEecCCCChhhHHhhhcccccCCC------CceEEEEeCcccHHHHHHH
Q psy15524 709 VKSGVLICTDVA--ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH------EGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 709 ~~~~vLv~T~~~--~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~------~g~~~~~~~~~e~~~~~~l 775 (930)
|+..||+.|.=+ =+=..+.++..||.|.+|..+.-|-..++-.+.... ...|.++++.-+.--++++
T Consensus 349 G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 349 GRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 999999999754 356677889999999999999888777765544332 5788888888777666665
No 259
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.15 E-value=2.3e-10 Score=136.05 Aligned_cols=153 Identities=21% Similarity=0.211 Sum_probs=100.3
Q ss_pred CcHHHHHHHHHhh----c------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 6 VTTVQQLSIQPIL----D------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 6 l~~~Q~~ai~~~~----~------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
++++|..|+..+. . .+..+++.|||||||++.+..+...+.. ....++|||+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-------cCCCeEEEEECcHHHHHHHHH
Confidence 6789999998763 2 2469999999999999877666544421 235679999999999999999
Q ss_pred HHHHHhhhcCCceeEEeeCCCchHHHHHHhcC-CCcEEEEChHHHHHHHhcC-CCccCCCc-cEEEEcccccccccCcHH
Q psy15524 76 IFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHT-ETLKFSKV-EHLVLDEADRILDQGYER 152 (930)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~-~~~~l~~l-~~vViDE~h~~~~~~~~~ 152 (930)
.|..+..... .+..+.......+.. ..+|+|+|.+.+...+... ..+...+- .+||+||||+.....+..
T Consensus 312 ~f~~~~~~~~-------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~ 384 (667)
T TIGR00348 312 EFQSLQKDCA-------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAK 384 (667)
T ss_pred HHHhhCCCCC-------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHH
Confidence 9988763211 111222333333433 3689999999997643321 11111111 289999999865433322
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 153 DIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 153 ~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
. ++..-++..++||||||-.
T Consensus 385 ~-------l~~~~p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 385 N-------LKKALKNASFFGFTGTPIF 404 (667)
T ss_pred H-------HHhhCCCCcEEEEeCCCcc
Confidence 2 2222355689999999964
No 260
>KOG0949|consensus
Probab=99.14 E-value=1e-10 Score=133.08 Aligned_cols=164 Identities=17% Similarity=0.143 Sum_probs=114.9
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|-.||++.+..+-.+.+++|+|||.+|||.+-...+-..+.. .+..-+|+++|+++|++|........+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~ 583 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-------SDSDVVIYVAPTKALVNQVSANVYARFDTK 583 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh-------cCCCEEEEecchHHHhhhhhHHHHHhhccC
Confidence 4789999999999999999999999999999866666655544 234459999999999999999888876422
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC--CCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.......+.|.-.. ..+.-.-+|+|+|+-|+.+-..+... ......+++++|+||+|++....-+--++.++..+
T Consensus 584 t~~rg~sl~g~ltq--EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li- 660 (1330)
T KOG0949|consen 584 TFLRGVSLLGDLTQ--EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI- 660 (1330)
T ss_pred ccccchhhHhhhhH--HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc-
Confidence 21111112222111 11111235899999999998888763 23336889999999999997654322233333222
Q ss_pred hcCCCceEEEEEeecCCCcc
Q psy15524 163 KQKPQFQSILLSATLTPATC 182 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~~~ 182 (930)
.++++++|||.++...
T Consensus 661 ----~CP~L~LSATigN~~l 676 (1330)
T KOG0949|consen 661 ----PCPFLVLSATIGNPNL 676 (1330)
T ss_pred ----CCCeeEEecccCCHHH
Confidence 3679999999998653
No 261
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.12 E-value=1.1e-09 Score=124.71 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=102.9
Q ss_pred ccCcHHHHHHHHHhh----cCC-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL----DGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~----~g~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
..++.+|..||..+. .|+ .+|+++.||+|||..++. ++.+|.+ ++.-.++|+|+-+++|+.|.+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r------~~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIK------SGWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHh------cchhheeeEEechHHHHHHHHHHHH
Confidence 368999999997754 454 499999999999998544 4455554 2334569999999999999999988
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC----CCccCCCccEEEEcccccccccCcHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT----ETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~----~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
.+......++......+. ..++|.++|...+....... ..+....+++|||||||+=.- ...
T Consensus 237 ~~~P~~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~----~~~ 302 (875)
T COG4096 237 DFLPFGTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY----SEW 302 (875)
T ss_pred HhCCCccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH----hhh
Confidence 876543322221111111 14789999999998877653 234457799999999997332 223
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..|+..+... .+++||||..
T Consensus 303 ~~I~dYFdA~-----~~gLTATP~~ 322 (875)
T COG4096 303 SSILDYFDAA-----TQGLTATPKE 322 (875)
T ss_pred HHHHHHHHHH-----HHhhccCccc
Confidence 3555555432 3566999975
No 262
>KOG2340|consensus
Probab=99.11 E-value=3.4e-09 Score=113.65 Aligned_cols=348 Identities=20% Similarity=0.241 Sum_probs=220.1
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEcc-CCCch--hHHhhHHHHHHHHhhCccc-------------------CC---CCC
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQ-TGSGK--TLAYAIPIIQKLQEMRPKI-------------------SR---KDG 466 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~-TGsGK--Tl~~~lp~l~~l~~~~~~~-------------------~~---~~~ 466 (930)
-..+|+.|.+.+..+.+-+|++..-. -+.|+ +-.|++-+++++.+.+..+ .+ -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 35789999999999999999775322 23455 4568888898876543110 01 124
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCCCc---c------eE---------------------EEeCCCc--------hH
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFTWI---V------PS---------------------WLTGGEK--------MK 508 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~---~------~~---------------------~~~gg~~--------~~ 508 (930)
++||||+|+|+-|..+...+..++.....- + .+ .+.|.++ ..
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 789999999999999999988874321110 0 00 0111110 00
Q ss_pred HHHHHH---hcCCcEEEECchhHHHhhhccCC----c-ccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCc-----
Q psy15524 509 SEKARI---RKGISILVATPGRLLDHCKHTET----L-KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP----- 575 (930)
Q Consensus 509 ~~~~~~---~~~~~Ilv~Tp~rl~~~l~~~~~----~-~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~----- 575 (930)
...-.+ ....||+||+|=-|--.+.+++. + .++++.++|+|-||.++..+| +.+..|+.+|...+.
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCC
Confidence 000011 23578999999777666654322 1 378899999999998886665 445667777754332
Q ss_pred ----------------cceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEE-------EE
Q psy15524 576 ----------------QFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHF-------IV 631 (930)
Q Consensus 576 ----------------~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 631 (930)
-+|+++||+-..+....+...+..|-. .+......... ...... -.+.|.+ +.
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~g-si~~v~--~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGG-SISNVG--IPLCQVFQRIEVKSII 529 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCC-chhhcc--chhhhhhhheeccCcc
Confidence 368999999988887777776665531 11111110000 000111 1122222 23
Q ss_pred cCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC
Q psy15524 632 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711 (930)
Q Consensus 632 ~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~ 711 (930)
..++.|+......+..... ......++||.++.-.--.+...+++. .+.+..+|...++..-.+.-+.|-.|..
T Consensus 530 ~~~D~RFkyFv~~ImPq~~---k~t~s~~LiyIPSYfDFVRvRNy~K~e---~i~F~~i~EYssk~~vsRAR~lF~qgr~ 603 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLI---KRTESGILIYIPSYFDFVRVRNYMKKE---EISFVMINEYSSKSKVSRARELFFQGRK 603 (698)
T ss_pred cCchHHHHHHHHhhchhhc---ccccCceEEEecchhhHHHHHHHhhhh---hcchHHHhhhhhHhhhhHHHHHHHhcCc
Confidence 3445666665555443222 122567899999987666666777664 5677777877777777778888999999
Q ss_pred cEEEecccc--ccccCCCCccEEEEecCCCChh---hHHhhhcccccCCC----CceEEEEeCcccH
Q psy15524 712 GVLICTDVA--ARGLDLPLVDWIVQYTAPSSST---DYVHRVGRTARVGH----EGSSLLFLIPSEV 769 (930)
Q Consensus 712 ~vLv~T~~~--~~GlDip~v~~VI~~~~p~s~~---~y~qr~GRagR~g~----~g~~~~~~~~~e~ 769 (930)
.||+-|.-+ -|-.++.+|..||.|.+|..|. +++.+.||+.-.|+ .-.|.++++.-+.
T Consensus 604 ~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 604 SVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred eEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 999999765 4778999999999999999885 55677888765553 2356666665444
No 263
>KOG1002|consensus
Probab=99.08 E-value=1.3e-08 Score=107.96 Aligned_cols=138 Identities=22% Similarity=0.247 Sum_probs=104.6
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC-CCcE
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV-KSGV 713 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~-~~~v 713 (930)
..|..+|.+.+..... .+..-|.|||..-....+.+.-.|.+. |+.+..+-|+|++..|...++.|++. .++|
T Consensus 619 STKIEAL~EEl~~l~~---rd~t~KsIVFSQFTSmLDLi~~rL~ka---GfscVkL~GsMs~~ardatik~F~nd~~c~v 692 (791)
T KOG1002|consen 619 STKIEALVEELYFLRE---RDRTAKSIVFSQFTSMLDLIEWRLGKA---GFSCVKLVGSMSPAARDATIKYFKNDIDCRV 692 (791)
T ss_pred hhHHHHHHHHHHHHHH---cccchhhhhHHHHHHHHHHHHHHhhcc---CceEEEeccCCChHHHHHHHHHhccCCCeEE
Confidence 3456666665554322 223568899998888888877777764 99999999999999999999999976 3444
Q ss_pred -EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC--CceEEEEeCcccHH-HHHHHHhc
Q psy15524 714 -LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH--EGSSLLFLIPSEVK-LVEELQNR 778 (930)
Q Consensus 714 -Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~e~~-~~~~l~~~ 778 (930)
|++-.+.+.-+|+...+.|+..|+.+++..-.|--.|..|.|+ +-..+-|+..+..+ .+-.|+++
T Consensus 693 fLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 693 FLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred EEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 6677888888999999999999999999988888888888886 55666677665443 44445544
No 264
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.06 E-value=3.3e-09 Score=128.17 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=99.5
Q ss_pred cCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.|.|+|.+++..++.. ..+|+.-..|.|||.-+.+.+-..+.. +...++|||||. .|+.|+..++.+.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-------g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-------GRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-------CCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 5899999998776643 479999999999999887666555443 223359999997 899999999877653
Q ss_pred hcCCceeEEeeCCCchHHH--HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHHH
Q psy15524 83 SFTWIVPSWLTGGEKMKSE--KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLE 159 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~--~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~~ 159 (930)
.....+.++...... ........+++|+|.+.+...-.....+.-...++|||||||++-.. +....-...+.
T Consensus 224 ----l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 224 ----LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred ----CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 222222222111100 00111236799999887754211101122347899999999998521 11111123333
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.+... ...+++|||||-.
T Consensus 300 ~La~~--~~~~LLLTATP~q 317 (956)
T PRK04914 300 QLAEV--IPGVLLLTATPEQ 317 (956)
T ss_pred HHhhc--cCCEEEEEcCccc
Confidence 33322 2368999999964
No 265
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.05 E-value=1.8e-08 Score=116.07 Aligned_cols=292 Identities=17% Similarity=0.206 Sum_probs=168.0
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
.+|.||.|||||.+. +.-+..... .++.++|+|+-.+.|+.+..+.++...-. ..+ .+...+. .
T Consensus 52 ~vVRSpMGTGKTtaL-i~wLk~~l~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv-~Y~d~~~-~---- 115 (824)
T PF02399_consen 52 LVVRSPMGTGKTTAL-IRWLKDALK-------NPDKSVLVVSHRRSLTKSLAERFKKAGLS--GFV-NYLDSDD-Y---- 115 (824)
T ss_pred EEEECCCCCCcHHHH-HHHHHHhcc-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC--cce-eeecccc-c----
Confidence 689999999999874 333333221 34678999999999999999998765321 111 1111110 0
Q ss_pred HHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHH-------HHHHHHHHhhcCccceEEEEc
Q psy15524 512 ARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD-------IAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 512 ~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~-------l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+. ...+-+++..+.|.... ...+.+.++|||||+..++..-|.+. +..+...+.. ...+|++-
T Consensus 116 -~i~~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~---ak~VI~~D 187 (824)
T PF02399_consen 116 -IIDGRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN---AKTVIVMD 187 (824)
T ss_pred -cccccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh---CCeEEEec
Confidence 000 12456777766665443 22467799999999998876533322 2223333332 45789999
Q ss_pred cccCHHHHHHHhhhcCC-CEEEEccCCCCcccC-------------------------ccceec----CCCceEEEEEcC
Q psy15524 584 ATLTPAVQRLAGMTLQN-PIQIDAADSTDIHNT-------------------------TDSLVI----PDSLKQHFIVTP 633 (930)
Q Consensus 584 AT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~-------------------------~~~~~~----~~~~~~~~~~~~ 633 (930)
||+.+..-++......+ ++.+....-...... ...... +......-....
T Consensus 188 A~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (824)
T PF02399_consen 188 ADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISND 267 (824)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccc
Confidence 99999888887765443 232222110000000 000000 000011111111
Q ss_pred chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcE
Q psy15524 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713 (930)
Q Consensus 634 ~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~v 713 (930)
...-+..|...|.. ++++-||++|...++.+++..... +..+..++|.-+..+ +. . -++.+|
T Consensus 268 ~~tF~~~L~~~L~~---------gknIcvfsSt~~~~~~v~~~~~~~---~~~Vl~l~s~~~~~d---v~-~--W~~~~V 329 (824)
T PF02399_consen 268 ETTFFSELLARLNA---------GKNICVFSSTVSFAEIVARFCARF---TKKVLVLNSTDKLED---VE-S--WKKYDV 329 (824)
T ss_pred hhhHHHHHHHHHhC---------CCcEEEEeChHHHHHHHHHHHHhc---CCeEEEEcCCCCccc---cc-c--ccceeE
Confidence 11222233333321 678889999999999998888765 456777788665552 22 2 356789
Q ss_pred EEeccccccccCCCCc--cEEEEe--cCC--CChhhHHhhhcccccCCCCceEEEEeCc
Q psy15524 714 LICTDVAARGLDLPLV--DWIVQY--TAP--SSSTDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 714 Lv~T~~~~~GlDip~v--~~VI~~--~~p--~s~~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
++=|.+..-|+++-.. +-+.-| ... .+..+..|++||.=... ....++++.+
T Consensus 330 viYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 330 VIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred EEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 9999999999999543 333333 222 24556899999984433 4555555554
No 266
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.05 E-value=1.7e-09 Score=130.19 Aligned_cols=166 Identities=23% Similarity=0.240 Sum_probs=104.2
Q ss_pred CcHHHHHHHHHhhcC---C-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 6 VTTVQQLSIQPILDG---G-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g---~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.++.|..++..+..+ . .+++.||||+|||.+.+.++...+... .....+++++.|++.++++++++++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 488999999887753 3 689999999999999999998877652 1146679999999999999999999887
Q ss_pred hhcCCceeEEeeCCCchHHHHHH-----h---------cCCCcEEEEChHHHHHHHhcCCCcc-C--CCccEEEEccccc
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKAR-----I---------RKGISILVATPGRLLDHCKHTETLK-F--SKVEHLVLDEADR 144 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~-----l---------~~~~~Ilv~Tp~~l~~~l~~~~~~~-l--~~l~~vViDE~h~ 144 (930)
......... ..+.....-.... . .....+.++||-............. + =..+.+|+||+|.
T Consensus 271 ~~~~~~~~~-~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKS-LHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccccccccc-ccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 653322111 1111111100000 0 0114566777766655322111111 1 1247899999999
Q ss_pred ccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 145 ILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 145 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+.+..--..+..++..+...+ ..++++|||+|+
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g--~~ill~SATlP~ 382 (733)
T COG1203 350 YADETMLAALLALLEALAEAG--VPVLLMSATLPP 382 (733)
T ss_pred hcccchHHHHHHHHHHHHhCC--CCEEEEecCCCH
Confidence 987753344445555554332 467777777764
No 267
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=4.9e-09 Score=122.51 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=98.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|++.|.-..-.+..|+ +..+.||+|||+++.+|++..... |.++-+++|+--||.|-++.+..+...+
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 47888887766666665 999999999999999999877755 6669999999999999999999999988
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhcC-----CCccCCCccEEEEccccccc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKHT-----ETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~l~~vViDE~h~~~ 146 (930)
+ +.++++.++......... -.+||++||...+- +.++.. .....+.+.+.||||+|.++
T Consensus 149 G-l~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 149 G-LTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred C-CeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 7 788888777655443332 35799999987763 233321 11224678999999999865
No 268
>KOG0391|consensus
Probab=99.00 E-value=1.2e-08 Score=117.96 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC--c
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS--G 712 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~--~ 712 (930)
..|+..|+-+|.+... .+.++|||..-..+.+.+...|+.. |+.++.+.|...-++|...+++|..... +
T Consensus 1259 cGKLQtLAiLLqQLk~-----eghRvLIfTQMtkmLDVLeqFLnyH---gylY~RLDg~t~vEqRQaLmerFNaD~RIfc 1330 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKS-----EGHRVLIFTQMTKMLDVLEQFLNYH---GYLYVRLDGNTSVEQRQALMERFNADRRIFC 1330 (1958)
T ss_pred cchHHHHHHHHHHHHh-----cCceEEehhHHHHHHHHHHHHHhhc---ceEEEEecCCccHHHHHHHHHHhcCCCceEE
Confidence 3566666666655432 2889999999999999999988875 8999999999999999999999987653 5
Q ss_pred EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC--ceEEEEeCcc
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE--GSSLLFLIPS 767 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--g~~~~~~~~~ 767 (930)
.+++|..-+.|||+.+.|.||.||..+++..--|---|+.|.|+. -..+-|++.+
T Consensus 1331 fILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1331 FILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred EEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 789999999999999999999999998887655555555555554 3445555543
No 269
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.99 E-value=2.1e-09 Score=97.92 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=79.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~ 508 (930)
|+=-++-..+|+|||--.+--++..... .+.++|||.|||.++..+.+.++..--.+. +.-.. .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~~~~~~-------t~~~~-~ 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGLPVRFH-------TNARM-R 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTSSEEEE-------STTSS--
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcCCcccC-------ceeee-c
Confidence 4446788999999998755555554433 378899999999999988887754321111 00000 0
Q ss_pred HHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 509 ~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
....+.-|-++|.+.+...+.+ .....+++++|+||+|..-.... .....+..+... ....+|++|||+|.
T Consensus 68 ----~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sI--A~rg~l~~~~~~-g~~~~i~mTATPPG 138 (148)
T PF07652_consen 68 ----THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSI--AARGYLRELAES-GEAKVIFMTATPPG 138 (148)
T ss_dssp -------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHH--HHHHHHHHHHHT-TS-EEEEEESS-TT
T ss_pred ----cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHH--hhheeHHHhhhc-cCeeEEEEeCCCCC
Confidence 1124567889999988776655 34468999999999996532221 111222333322 24689999999986
Q ss_pred HH
Q psy15524 589 AV 590 (930)
Q Consensus 589 ~~ 590 (930)
..
T Consensus 139 ~~ 140 (148)
T PF07652_consen 139 SE 140 (148)
T ss_dssp --
T ss_pred CC
Confidence 44
No 270
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.99 E-value=5.8e-09 Score=107.73 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=98.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++..+..|+ .|+++|..++=.+..|+ ++++.||-|||++..+|++-.... |..|-|++.+..||.+
T Consensus 66 ~rea~~r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~R 133 (266)
T PF07517_consen 66 VREAARRTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKR 133 (266)
T ss_dssp HHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHH
T ss_pred HHHHHHHHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhc
Confidence 33444444554 67888888876666665 999999999999999888766554 7789999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc----CCc-ccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT----ETL-KFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~----~~~-~~~~l~~lVlDEah~l~ 555 (930)
-++.+..++..++ +.++.+.++..... ++....++|+++|.+.+ .|.++.. ... ..+.++++|+||||.++
T Consensus 134 D~~~~~~~y~~LG-lsv~~~~~~~~~~~--r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 134 DAEEMRPFYEFLG-LSVGIITSDMSSEE--RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHHHHHTT---EEEEETTTEHHH--HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cHHHHHHHHHHhh-hccccCccccCHHH--HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999998776 45666777665432 22344679999999887 3444331 111 25789999999999876
No 271
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.99 E-value=5.6e-09 Score=120.62 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=50.2
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 16 PILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 16 ~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
++.+++.+++.||||+|||++|++|++..+.. ..+.++||++||++|+.|+.+.+..+.
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-------~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-------RPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-------ccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999987753 124679999999999999999888776
No 272
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.96 E-value=6.2e-09 Score=128.08 Aligned_cols=69 Identities=26% Similarity=0.278 Sum_probs=55.9
Q ss_pred CCccCcHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH-H
Q psy15524 2 NITQVTTVQQLSIQ----PILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE-I 76 (930)
Q Consensus 2 g~~~l~~~Q~~ai~----~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~-~ 76 (930)
||+ ++|.|.+.+. .+..|+++++.||||+|||++|++|++.... ++.+++|.+||++|..|+.. .
T Consensus 243 ~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---------~~~~vvi~t~t~~Lq~Ql~~~~ 312 (850)
T TIGR01407 243 GLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---------TEKPVVISTNTKVLQSQLLEKD 312 (850)
T ss_pred CCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---------CCCeEEEEeCcHHHHHHHHHHH
Confidence 675 8999998666 4557889999999999999999999987653 13469999999999999876 3
Q ss_pred HHHH
Q psy15524 77 FTKL 80 (930)
Q Consensus 77 ~~~~ 80 (930)
+..+
T Consensus 313 ~~~l 316 (850)
T TIGR01407 313 IPLL 316 (850)
T ss_pred HHHH
Confidence 4444
No 273
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=2.5e-08 Score=114.07 Aligned_cols=130 Identities=24% Similarity=0.298 Sum_probs=99.6
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|++.|.-..-.++.| -+..+.||+|||++..+|++..... |.++-+++|+--||.|-++.+..+.
T Consensus 76 g~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 44 4788998888888877 3789999999999999999877654 5669999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhc-----CCCccCCCccEEEEccccccc
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKH-----TETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~-----~~~~~l~~l~~vViDE~h~~~ 146 (930)
..++ +.++++.++.......... .+||+++|...+- +.++. ......+.+.+.||||+|.++
T Consensus 144 ~~LG-Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 144 EALG-LTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HhcC-CEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 8877 7888887776544333322 5899999987652 22221 122235678999999999875
No 274
>KOG0388|consensus
Probab=98.94 E-value=4.3e-08 Score=108.28 Aligned_cols=118 Identities=20% Similarity=0.348 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc-E
Q psy15524 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG-V 713 (930)
Q Consensus 635 ~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~-v 713 (930)
..|+..|-.+|..... .+.++++|+.-.++.+.+.++|... ++.+..+.|.....+|..+..+|+..++- .
T Consensus 1027 SgKL~~LDeLL~kLka-----egHRvL~yfQMTkM~dl~EdYl~yr---~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvF 1098 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKA-----EGHRVLMYFQMTKMIDLIEDYLVYR---GYTYLRLDGSSKASDRRDVVRDWQASDIFVF 1098 (1185)
T ss_pred ccceeeHHHHHHHhhc-----CCceEEehhHHHHHHHHHHHHHHhh---ccceEEecCcchhhHHHHHHhhccCCceEEE
Confidence 3455555555554322 3889999999999999999998864 88999999999999999999999987654 5
Q ss_pred EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceE
Q psy15524 714 LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760 (930)
Q Consensus 714 Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~ 760 (930)
|++|.+.+-||++.+.+.||.||..+++.--.|...||.|.|+....
T Consensus 1099 LLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1099 LLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDV 1145 (1185)
T ss_pred EEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccce
Confidence 89999999999999999999999999999999999999999986543
No 275
>KOG0386|consensus
Probab=98.94 E-value=5.9e-09 Score=119.90 Aligned_cols=110 Identities=17% Similarity=0.335 Sum_probs=95.9
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCC---cEEEeccccccccCCCCccEEE
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS---GVLICTDVAARGLDLPLVDWIV 733 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~---~vLv~T~~~~~GlDip~v~~VI 733 (930)
+++++.||.-......+..+|.- +++.+..+.|....++|...++.|..... .+|.+|...+.|+|+...+.||
T Consensus 726 gHRVLlF~qMTrlmdimEdyL~~---~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvi 802 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDILEDYLQI---REYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVI 802 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHHHhh---hhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEE
Confidence 78999999988888888777764 37889999999999999999999987654 4789999999999999999999
Q ss_pred EecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 734 QYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 734 ~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.||..+++....|+--||.|.|+...+-++......
T Consensus 803 ifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 803 IFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred EecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 999999999999999999999998777666554433
No 276
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.94 E-value=1.4e-09 Score=127.29 Aligned_cols=145 Identities=12% Similarity=0.062 Sum_probs=100.4
Q ss_pred EEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCC----chH
Q psy15524 24 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE----KMK 99 (930)
Q Consensus 24 lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~----~~~ 99 (930)
+..+.+|||||.+|+-.+...+.. |.++|||+|.++|+.|+.++|++.+.. ..+..++++. ...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYR 231 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHH
Confidence 344446999999999888777754 567999999999999999999988751 1233344443 344
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc---CcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 100 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ---GYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 100 ~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~---~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
.+.....+..+|+||| ++.-+.++.++++|||||-|.-.-. +.+...+. +..++....++.+|+.|||
T Consensus 232 ~w~~~~~G~~~IViGt--------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRd-vA~~Ra~~~~~~lvLgSaT 302 (665)
T PRK14873 232 RWLAVLRGQARVVVGT--------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHARE-VALLRAHQHGCALLIGGHA 302 (665)
T ss_pred HHHHHhCCCCcEEEEc--------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHH-HHHHHHHHcCCcEEEECCC
Confidence 4555555668999999 5556677999999999999964321 11112222 2333344456789999999
Q ss_pred cCCCccccccccc
Q psy15524 177 LTPATCWCKHTET 189 (930)
Q Consensus 177 ~~~~~~~~~~~~~ 189 (930)
++-++++....+.
T Consensus 303 PSles~~~~~~g~ 315 (665)
T PRK14873 303 RTAEAQALVESGW 315 (665)
T ss_pred CCHHHHHHHhcCc
Confidence 9988766544333
No 277
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.93 E-value=1.1e-08 Score=109.18 Aligned_cols=76 Identities=21% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHhH----HhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 410 MNITQVTTVQQLSI----QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i----~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
|.|. ++|.|.+.+ ..+..|+++++.||||+|||+++++|++..+...... ..+.+++|.++|..+..|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 5565 499999944 4455688899999999999999999999876652211 1234799999999999998777
Q ss_pred HHHh
Q psy15524 486 FTKL 489 (930)
Q Consensus 486 ~~~~ 489 (930)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 278
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.93 E-value=1.1e-08 Score=109.18 Aligned_cols=76 Identities=21% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHhH----HhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 410 MNITQVTTVQQLSI----QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i----~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
|.|. ++|.|.+.+ ..+..|+++++.||||+|||+++++|++..+...... ..+.+++|.++|..+..|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 5565 499999944 4455688899999999999999999999876652211 1234799999999999998777
Q ss_pred HHHh
Q psy15524 486 FTKL 489 (930)
Q Consensus 486 ~~~~ 489 (930)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7665
No 279
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.90 E-value=7.2e-08 Score=117.13 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=103.2
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|.|+|.+.+..+. .|.+.|++-..|.|||+..+.. +..+...+ .....+|||+|. +++.|+.+++.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~-----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR-----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc-----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 68999999998764 5788999999999999975443 33443211 112348999995 6778899999988
Q ss_pred hhhcCCceeEEeeCCCchHHHH--H-HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEK--A-RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~--~-~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
+. ...+..+.|........ . .....++|+|+|++.+...... +.--..++|||||||++-... ......
T Consensus 242 ~p---~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~~--Sklska 313 (1033)
T PLN03142 242 CP---VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNEN--SLLSKT 313 (1033)
T ss_pred CC---CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCHH--HHHHHH
Confidence 64 35555566654322221 1 1234589999999998764322 222357899999999985432 223344
Q ss_pred HHHHhhcCCCceEEEEEeecCC
Q psy15524 158 LEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+..+.. ...++||+||-.
T Consensus 314 lr~L~a----~~RLLLTGTPlq 331 (1033)
T PLN03142 314 MRLFST----NYRLLITGTPLQ 331 (1033)
T ss_pred HHHhhc----CcEEEEecCCCC
Confidence 444432 257899999954
No 280
>KOG4439|consensus
Probab=98.87 E-value=9.2e-08 Score=106.22 Aligned_cols=122 Identities=11% Similarity=0.206 Sum_probs=85.8
Q ss_pred chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc--CCC
Q psy15524 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS--VKS 711 (930)
Q Consensus 634 ~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~--~~~ 711 (930)
+.-|+......+...... ...+++|...=......+...+++ .|..+..+||.....+|..+.+.|.. |..
T Consensus 727 ~S~Ki~~~l~~le~i~~~----skeK~viVSQwtsvLniv~~hi~~---~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~ 799 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTS----SKEKVVIVSQWTSVLNIVRKHIQK---GGHIYTSITGQVLVKDRQEIVDEFNQEKGGA 799 (901)
T ss_pred chhHHHHHHHHHHHHhhc----ccceeeehhHHHHHHHHHHHHHhh---CCeeeeeecCccchhHHHHHHHHHHhccCCc
Confidence 334444444444433111 145665533222222333344444 37889999999999999999999974 434
Q ss_pred cE-EEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE
Q psy15524 712 GV-LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762 (930)
Q Consensus 712 ~v-Lv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~ 762 (930)
+| |++-.+-+.|+|+-+.+++|..|+.+++.---|..-|.-|.|+....++
T Consensus 800 rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 800 RVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred eEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 45 5666777899999999999999999999999999999999998776654
No 281
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.87 E-value=2.1e-08 Score=121.57 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=60.2
Q ss_pred CCccCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH-HH
Q psy15524 2 NITQVTTVQQLSIQPI----LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL-EI 76 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~----~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~-~~ 76 (930)
|| ++++.|.+....+ .++..+++.|+||+|||++|++|++... .+.++||++||++|+.|+. +.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHHHHHH
Confidence 45 4899999955443 3577899999999999999999988653 1356999999999999995 55
Q ss_pred HHHHhhhcCCceeEEeeCC
Q psy15524 77 FTKLCKSFTWIVPSWLTGG 95 (930)
Q Consensus 77 ~~~~~~~~~~~~~~~~~g~ 95 (930)
+..+...++ +....+.|+
T Consensus 312 i~~l~~~~~-~~~~~~kg~ 329 (820)
T PRK07246 312 VKAIQEVFH-IDCHSLKGP 329 (820)
T ss_pred HHHHHHhcC-CcEEEEECC
Confidence 666554433 333344443
No 282
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.82 E-value=2.4e-07 Score=109.72 Aligned_cols=152 Identities=21% Similarity=0.192 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCce
Q psy15524 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIV 88 (930)
Q Consensus 9 ~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~ 88 (930)
...+.+.++.+..-+++++|||||||...=.-+++... ..+.++.+.-|.|-=|..+++++.+....-..-.
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 34445555666777999999999999854333433321 2345678888999878888887766654322122
Q ss_pred eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc-ccccCcHHHHHHHHHH-HhhcCC
Q psy15524 89 PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-ILDQGYERDIAEFLEI-LKKQKP 166 (930)
Q Consensus 89 ~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~-~~~~~~~~~~~~i~~~-l~~~~~ 166 (930)
++.-.-.+ ........|-+.|.+.|+..+.+. ..++.+++|||||+|. -++..+ +..++.. +...++
T Consensus 126 VGY~iRfe------~~~s~~Trik~mTdGiLlrei~~D--~~Ls~ys~vIiDEaHERSl~tDi---lLgllk~~~~~rr~ 194 (845)
T COG1643 126 VGYSIRFE------SKVSPRTRIKVMTDGILLREIQND--PLLSGYSVVIIDEAHERSLNTDI---LLGLLKDLLARRRD 194 (845)
T ss_pred eeEEEEee------ccCCCCceeEEeccHHHHHHHhhC--cccccCCEEEEcchhhhhHHHHH---HHHHHHHHHhhcCC
Confidence 32222111 112345689999999999998753 3489999999999994 121111 1122222 233344
Q ss_pred CceEEEEEeecCC
Q psy15524 167 QFQSILLSATLTP 179 (930)
Q Consensus 167 ~~~~i~lSAT~~~ 179 (930)
+.++|.+|||+..
T Consensus 195 DLKiIimSATld~ 207 (845)
T COG1643 195 DLKLIIMSATLDA 207 (845)
T ss_pred CceEEEEecccCH
Confidence 5677777777653
No 283
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.81 E-value=4.6e-08 Score=104.33 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=57.1
Q ss_pred CcHHHHHHH----HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 6 VTTVQQLSI----QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 6 l~~~Q~~ai----~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
++|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+...... ..+.+++|.++|.++..|....+++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHHHhc
Confidence 699999944 4456789999999999999999999999877642221 02347999999999988887777665
No 284
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.81 E-value=4.6e-08 Score=104.33 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=57.1
Q ss_pred CcHHHHHHH----HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 6 VTTVQQLSI----QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 6 l~~~Q~~ai----~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
++|.|.+.+ ..+.+|.++++.||||+|||++|++|++..+...... ..+.+++|.++|.++..|....+++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHHHHhc
Confidence 699999944 4456789999999999999999999999877642221 02347999999999988887777665
No 285
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.80 E-value=2e-08 Score=91.60 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=80.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
+|+-.++-..+|+|||--.+--++..-.. .+.++|||.|||.++..+.+.++... +.+ ......
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~~-----~~~--~t~~~~- 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGLP-----VRF--HTNARM- 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTSS-----EEE--ESTTSS-
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcCC-----ccc--Cceeee-
Confidence 45567889999999999755544443332 25669999999999999998875432 111 111110
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 99 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 99 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
. ...++.-|-++|...+...+.+ .....+.+++|+||+|..-.+. -..+..+..+... ..+.+|++||||+
T Consensus 67 ~----~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 67 R----THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred c----cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHH--HhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 0 1123455788888888877764 3446899999999999753222 1222333333332 3468999999998
Q ss_pred CCc
Q psy15524 179 PAT 181 (930)
Q Consensus 179 ~~~ 181 (930)
...
T Consensus 138 G~~ 140 (148)
T PF07652_consen 138 GSE 140 (148)
T ss_dssp T--
T ss_pred CCC
Confidence 755
No 286
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.74 E-value=1.5e-06 Score=106.97 Aligned_cols=139 Identities=23% Similarity=0.198 Sum_probs=92.4
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 509 (930)
+..+|.--||||||++... +.+.+... ...+.+++|+-.++|-.|+.+.+..+....... + ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~-~----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFND-P----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhc-c----cccCHHH
Confidence 3489999999999998443 33444432 457889999999999999999999887543211 1 2334444
Q ss_pred HHHHHhcC-CcEEEECchhHHHhhhccCCc-ccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 510 EKARIRKG-ISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 510 ~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
....+..+ ..|+|+|-.++-......... .-++=-++|+|||||- .++..-..+...++ +...++||+|+-
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~----~a~~~gFTGTPi 414 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK----KAIFIGFTGTPI 414 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc----cceEEEeeCCcc
Confidence 44555544 489999999987666543111 1122237899999974 33444444444554 578899999975
No 287
>KOG0920|consensus
Probab=98.73 E-value=5.8e-07 Score=106.10 Aligned_cols=158 Identities=22% Similarity=0.255 Sum_probs=107.0
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCC
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 86 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 86 (930)
+..+++.+.++.+..-++|++.||+|||.-.---+++...... ....+++--|.|--|..++++....-.....
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 4566777788888889999999999999865545555543322 3455788889998888888876544322221
Q ss_pred ceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc-ccCcHHHHHHHHHHHhhcC
Q psy15524 87 IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL-DQGYERDIAEFLEILKKQK 165 (930)
Q Consensus 87 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~-~~~~~~~~~~i~~~l~~~~ 165 (930)
..++.-.+..+ .......+++||.+.|++.+.. .-.+.++.++|+||+|.=. +..| +..++..+-..+
T Consensus 249 ~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~Df---lLi~lk~lL~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDF---LLILLKDLLPRN 317 (924)
T ss_pred CeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCccc---HHHHHHHHhhhC
Confidence 33332222221 1122367999999999999875 4458899999999999532 2222 334445555566
Q ss_pred CCceEEEEEeecCCCc
Q psy15524 166 PQFQSILLSATLTPAT 181 (930)
Q Consensus 166 ~~~~~i~lSAT~~~~~ 181 (930)
|+.++|+||||+....
T Consensus 318 p~LkvILMSAT~dae~ 333 (924)
T KOG0920|consen 318 PDLKVILMSATLDAEL 333 (924)
T ss_pred CCceEEEeeeecchHH
Confidence 9999999999998543
No 288
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.72 E-value=4.2e-08 Score=106.78 Aligned_cols=146 Identities=22% Similarity=0.233 Sum_probs=80.1
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCc-h
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK-M 507 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~-~ 507 (930)
.+.++++..+|+|||+..+..+ ..+...... .....+|||+|. .+..||..++.+++.... .. .....|.. .
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~~---~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~-~~-v~~~~~~~~~ 97 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALI-SYLKNEFPQ---RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDS-LR-VIIYDGDSER 97 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHH-HHHHHCCTT---SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-T-S--EEEESSSCHH
T ss_pred CCCEEEEECCCCCchhhhhhhh-hhhhhcccc---ccccceeEeecc-chhhhhhhhhcccccccc-cc-cccccccccc
Confidence 3569999999999999855444 344332110 112259999999 888999999999885322 22 33344433 2
Q ss_pred HHHHHHHhcCCcEEEECchhHHHhhh--ccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccc
Q psy15524 508 KSEKARIRKGISILVATPGRLLDHCK--HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585 (930)
Q Consensus 508 ~~~~~~~~~~~~Ilv~Tp~rl~~~l~--~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT 585 (930)
...........+++|+|.+.+...-. ....+..-++++||+||+|.+-+.+. ... ..+.... ....+++|||
T Consensus 98 ~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s--~~~---~~l~~l~-~~~~~lLSgT 171 (299)
T PF00176_consen 98 RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS--KRY---KALRKLR-ARYRWLLSGT 171 (299)
T ss_dssp HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS--HHH---HHHHCCC-ECEEEEE-SS
T ss_pred ccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccc--ccc---ccccccc-cceEEeeccc
Confidence 22122223458899999998871100 11112223489999999999844332 122 2222222 5567899999
Q ss_pred cC
Q psy15524 586 LT 587 (930)
Q Consensus 586 ~~ 587 (930)
+-
T Consensus 172 P~ 173 (299)
T PF00176_consen 172 PI 173 (299)
T ss_dssp -S
T ss_pred cc
Confidence 74
No 289
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.71 E-value=1.7e-07 Score=118.19 Aligned_cols=120 Identities=20% Similarity=0.338 Sum_probs=100.2
Q ss_pred hhHHHHHHHH-HhhccCCCcCCCc--eEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC--C
Q psy15524 636 LRLVALASFI-LGKCQNVNEDEES--KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV--K 710 (930)
Q Consensus 636 ~~~~~l~~~l-~~~~~~~~~~~~~--k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~--~ 710 (930)
.+...+..++ ..... .+. ++++|.......+.+...+... ++.+..++|+++..+|...++.|.++ .
T Consensus 692 ~k~~~l~~ll~~~~~~-----~~~~~kvlifsq~t~~l~il~~~l~~~---~~~~~~ldG~~~~~~r~~~i~~f~~~~~~ 763 (866)
T COG0553 692 GKLQALDELLLDKLLE-----EGHYHKVLIFSQFTPVLDLLEDYLKAL---GIKYVRLDGSTPAKRRQELIDRFNADEEE 763 (866)
T ss_pred hHHHHHHHHHHHHHHh-----hcccccEEEEeCcHHHHHHHHHHHHhc---CCcEEEEeCCCChhhHHHHHHHhhcCCCC
Confidence 4566666666 22221 145 9999999999999999888875 46789999999999999999999986 4
Q ss_pred CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEE
Q psy15524 711 SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763 (930)
Q Consensus 711 ~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~ 763 (930)
.-++++|.+.+.|+|+...++||++|+.+++....|...|+.|.|+...+.++
T Consensus 764 ~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 764 KVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 45788889999999999999999999999999999999999999987655443
No 290
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.65 E-value=6.4e-08 Score=105.31 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=89.3
Q ss_pred HHHHHHHHhh-------------cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 9 VQQLSIQPIL-------------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 9 ~Q~~ai~~~~-------------~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
+|.+++..++ ..+..+++-..|.|||...+..+. .+...... .....+|||+|. .+..|+.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~---~~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ---RGEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT---SS-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc---ccccceeEeecc-chhhhhhh
Confidence 5777777653 235699999999999988665554 33331111 111249999999 88899999
Q ss_pred HHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHh--cCCCccCCCccEEEEcccccccccCcHHH
Q psy15524 76 IFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK--HTETLKFSKVEHLVLDEADRILDQGYERD 153 (930)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~--~~~~~~l~~l~~vViDE~h~~~~~~~~~~ 153 (930)
++.+++.... ..+..+.|...............+++|+|.+.+..... ....+.--+.++||+||+|.+-+... .
T Consensus 76 E~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s--~ 152 (299)
T PF00176_consen 76 EIEKWFDPDS-LRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS--K 152 (299)
T ss_dssp HHHHHSGT-T-S-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTS--H
T ss_pred hhcccccccc-ccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccc--c
Confidence 9999985322 34444444441222222233457899999999881100 00111123489999999999843322 1
Q ss_pred HHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 154 IAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 154 ~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
....+..+. ...++++||||-.
T Consensus 153 ~~~~l~~l~----~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 153 RYKALRKLR----ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHCCC----ECEEEEE-SS-SS
T ss_pred ccccccccc----cceEEeecccccc
Confidence 122222232 4478999999864
No 291
>KOG1123|consensus
Probab=98.64 E-value=7e-08 Score=102.90 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=104.8
Q ss_pred cCcHHHHHHHHHhhc-C--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILD-G--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.++|+|+.++..+.. | ++-+|+.|-|+|||++-+-++... ...+|||+.+---+.|+...|..|+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------------cccEEEEecCccCHHHHHHHHHhhc
Confidence 589999999999873 4 478999999999999876655421 1239999999999999999999887
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-------CCccCCCccEEEEcccccccccCcHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-------~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
.-.+...+ ..+.+. ......++.|+|+|..++...-.++ .++.-...+++|+||+|.+...-|
T Consensus 370 ti~d~~i~-rFTsd~-----Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF---- 439 (776)
T KOG1123|consen 370 TIQDDQIC-RFTSDA-----KERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF---- 439 (776)
T ss_pred ccCccceE-Eeeccc-----cccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH----
Confidence 64443222 233222 1234567899999987764332221 112235678999999999875444
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
++++.....++ -+|||||+-++.
T Consensus 440 RRVlsiv~aHc----KLGLTATLvRED 462 (776)
T KOG1123|consen 440 RRVLSIVQAHC----KLGLTATLVRED 462 (776)
T ss_pred HHHHHHHHHHh----hccceeEEeecc
Confidence 55555555554 589999996643
No 292
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.58 E-value=1.6e-07 Score=110.34 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=95.7
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.++++|--. .+.-...-+..+.||+|||+++.+|++-.... |..+-+++|+--||.+-++.+..+...+
T Consensus 82 ~~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 82 RHFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CcchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 356666543 33334457899999999999999999866654 5669999999999999999999999877
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-ccC
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG 149 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~ 149 (930)
+ +.++++.++.......... .+||++||..-+ .+.|+.. .....+.+.+.||||+|.++ |..
T Consensus 151 G-l~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA 219 (913)
T PRK13103 151 G-LSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA 219 (913)
T ss_pred C-CEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheecccc
Confidence 7 7888887776554443333 289999998775 2222221 11224889999999999875 443
No 293
>KOG0922|consensus
Probab=98.57 E-value=3.1e-06 Score=94.81 Aligned_cols=147 Identities=24% Similarity=0.250 Sum_probs=89.2
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh-cCCceeE
Q psy15524 12 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS-FTWIVPS 90 (930)
Q Consensus 12 ~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~ 90 (930)
+.+..+..++-++|.++||||||.- +| +.+.+.. ....+++.+.-|.|-=|..++++....... ++ -.++
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG----~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG-~~VG 128 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAG----FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLG-EEVG 128 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcc----cccCCcEEeecCchHHHHHHHHHHHHHhCCCcC-ceee
Confidence 4445555677799999999999973 33 3333211 112233777889998888888876554432 22 1222
Q ss_pred EeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHHHhhcCCCce
Q psy15524 91 WLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQ 169 (930)
Q Consensus 91 ~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~l~~~~~~~~ 169 (930)
...-=+ ........|.+.|-+.|++.+.. .-.+++.++|||||||. -. .-+.+-.++..+-..+++.+
T Consensus 129 Y~IRFe------d~ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHE---Rsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 129 YTIRFE------DSTSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHE---RSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eEEEec------ccCCCceeEEEecchHHHHHHhc--CCccccccEEEEechhh---hhhHHHHHHHHHHHHHhcCCCce
Confidence 111000 01122467999999999987764 23478999999999993 11 11233344555555556667
Q ss_pred EEEEEeecC
Q psy15524 170 SILLSATLT 178 (930)
Q Consensus 170 ~i~lSAT~~ 178 (930)
+|.+|||+.
T Consensus 198 lIimSATld 206 (674)
T KOG0922|consen 198 LIIMSATLD 206 (674)
T ss_pred EEEEeeeec
Confidence 777777764
No 294
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.55 E-value=7.2e-07 Score=110.48 Aligned_cols=63 Identities=30% Similarity=0.334 Sum_probs=52.0
Q ss_pred cCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPI----LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 5 ~l~~~Q~~ai~~~----~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
+++|-|.+.+..+ ..++.+++.||||+|||++|++|++..... .+.+++|-++|++|..|+..
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~--------~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK--------KEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc--------cCCeEEEEcCCHHHHHHHHH
Confidence 5899999966554 357789999999999999999999865532 24569999999999999876
No 295
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.49 E-value=2.3e-06 Score=100.07 Aligned_cols=127 Identities=19% Similarity=0.175 Sum_probs=93.4
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
|++.|--.--.+ ...-+..+.||.|||+++.+|++-.... |..+-|+.+.--||..=++.+..+...++
T Consensus 86 ~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 86 HFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred cchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 555555443333 4457999999999999999998765543 45599999999999999999999988777
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-----HHHHhc-CCCccCCCccEEEEccccccc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-----LDHCKH-TETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-----~~~l~~-~~~~~l~~l~~vViDE~h~~~ 146 (930)
+.+++..++..... +...-.+||++||+..+ .+.+.. ......+.+.+.||||+|.++
T Consensus 155 -Ltvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 -LSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred -CeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 77887766554332 22334689999999887 444432 233346789999999999865
No 296
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.49 E-value=1.9e-06 Score=89.22 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=93.7
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|++.|.-++-.+..|+ |+...||-|||++..+|+.-.... |..|=|++..--||..=++.+..+...+
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 58899999887777765 999999999999998888666543 5568899999999999999999999888
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHH-HHhcC----CCc-cCCCccEEEEccccccc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD-HCKHT----ETL-KFSKVEHLVLDEADRIL 146 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~-~l~~~----~~~-~l~~l~~vViDE~h~~~ 146 (930)
+ +.++...++.......... .+||+++|...+.- .++.. ... ..+.+.++||||+|.++
T Consensus 146 G-lsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 G-LSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T---EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred h-hccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7 7888887776644333322 36899999988753 33321 111 15789999999999765
No 297
>KOG0921|consensus
Probab=98.45 E-value=7.7e-07 Score=101.35 Aligned_cols=321 Identities=18% Similarity=0.209 Sum_probs=185.2
Q ss_pred HhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh-ccCCCcceEEEe
Q psy15524 424 QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLT 502 (930)
Q Consensus 424 ~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~-~~~~~~~~~~~~ 502 (930)
..+..+.-+++...||+|||.-+.--+|+.+..... .....+.+--|+|--+.-+++.+..-- ...+.++
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~----g~~~na~v~qprrisaisiaerva~er~e~~g~tv----- 458 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN----GASFNAVVSQPRRISAISLAERVANERGEEVGETC----- 458 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccc----cccccceeccccccchHHHHHHHHHhhHHhhcccc-----
Confidence 333344558899999999999999999998876421 122346777799988888877664322 1111111
Q ss_pred CCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEE
Q psy15524 503 GGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILL 582 (930)
Q Consensus 503 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~ 582 (930)
|.+.+-+...-+.-..|..||-|-++..+.+ -+..+.++|+||.|...-.+ ..+..+++-+....+..+++++
T Consensus 459 -gy~vRf~Sa~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~--dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 459 -GYNVRFDSATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDT--DFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred -cccccccccccccccceeeeccchhhhhhhh----cccccccccchhhhhhccch--HHHHHHHHhhhccchhhhhhhh
Confidence 1111111111122346999999999887765 35678899999999654322 2233344444444456677777
Q ss_pred ccccCHHHHHHHhhhcCCCEEEEcc----------------------CCC-------Ccc-------------cCcccee
Q psy15524 583 SATLTPAVQRLAGMTLQNPIQIDAA----------------------DST-------DIH-------------NTTDSLV 620 (930)
Q Consensus 583 SAT~~~~~~~l~~~~~~~~~~i~~~----------------------~~~-------~~~-------------~~~~~~~ 620 (930)
|||+.-+ +...++.+-..+.+. ... ..+ .......
T Consensus 532 satIdTd---~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~ 608 (1282)
T KOG0921|consen 532 SATIDTD---LFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPS 608 (1282)
T ss_pred hcccchh---hhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChh
Confidence 7776432 111111111000000 000 000 0000000
Q ss_pred cCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC----CCceEEEecCCCCH
Q psy15524 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG----ENIAFFKLHGSMSQ 696 (930)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~----~~~~~~~lhg~~~~ 696 (930)
.-..................|.+.+...... ..-.+-++||.+.-...-++...+...-. ....++..|+....
T Consensus 609 ~~~~~~~am~~~se~d~~f~l~Eal~~~i~s--~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~ 686 (1282)
T KOG0921|consen 609 YNESTRTAMSRLSEKDIPFGLIEALLNDIAS--RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTS 686 (1282)
T ss_pred hcchhhhhhhcchhhcchhHHHHHHHhhhcc--cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhccc
Confidence 0000111111111222233333333332221 11256788999888777666555433210 13567788999999
Q ss_pred HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEec------------------CCCChhhHHhhhcccccCCCCc
Q psy15524 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT------------------APSSSTDYVHRVGRTARVGHEG 758 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~------------------~p~s~~~y~qr~GRagR~g~~g 758 (930)
.+..++++.-..|..+++++|.++..-+.+-++..||..+ ...+....+||.||+||. ++|
T Consensus 687 ~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G 765 (1282)
T KOG0921|consen 687 QEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPG 765 (1282)
T ss_pred HhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccc
Confidence 9999999999999999999999999999888877777544 334667789999999985 467
Q ss_pred eEEEEeCc
Q psy15524 759 SSLLFLIP 766 (930)
Q Consensus 759 ~~~~~~~~ 766 (930)
.|..+++.
T Consensus 766 ~~f~lcs~ 773 (1282)
T KOG0921|consen 766 FCFHLCSR 773 (1282)
T ss_pred ccccccHH
Confidence 77666553
No 298
>KOG0926|consensus
Probab=98.40 E-value=4.1e-06 Score=94.63 Aligned_cols=118 Identities=25% Similarity=0.243 Sum_probs=73.4
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcC-CCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeE
Q psy15524 12 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPS 90 (930)
Q Consensus 12 ~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~ 90 (930)
+.+++|.++-=++||+.||||||.- +| +.+....-.+ ...+++-+=|--|.|--|..++++...-...++ ..++
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~-~eVs 337 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLG-SEVS 337 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCc-ccee
Confidence 3444555555699999999999974 44 2222211111 112233455667998888888777655443333 1222
Q ss_pred E--eeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc
Q psy15524 91 W--LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR 144 (930)
Q Consensus 91 ~--~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~ 144 (930)
. -+.+. +.....|.++|-+.|+.-+. ..+.+...+.|||||||.
T Consensus 338 YqIRfd~t--------i~e~T~IkFMTDGVLLrEi~--~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 338 YQIRFDGT--------IGEDTSIKFMTDGVLLREIE--NDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred EEEEeccc--------cCCCceeEEecchHHHHHHH--HhHhhhhceeEEechhhh
Confidence 1 11111 22346799999999998876 456688999999999994
No 299
>KOG1015|consensus
Probab=98.40 E-value=6.9e-06 Score=94.13 Aligned_cols=122 Identities=18% Similarity=0.294 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC-------------------CCceEEEecCCCCHH
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG-------------------ENIAFFKLHGSMSQS 697 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~-------------------~~~~~~~lhg~~~~~ 697 (930)
|+..|..+|... .. -+.++|||..+....+.+..+|..... .|..++.+.|..+..
T Consensus 1127 KmiLLleIL~mc-ee----IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1127 KMILLLEILRMC-EE----IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred ceehHHHHHHHH-HH----hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 444555555432 22 267999999999998888777765422 266789999999999
Q ss_pred HHHHHHHHhhcCC----CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEE
Q psy15524 698 ERTEVFKTFRSVK----SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763 (930)
Q Consensus 698 ~R~~v~~~F~~~~----~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~ 763 (930)
.|....+.|.+-. ...||+|.+.+-|+|+-+.+.||.||..+++.--.|-+=|+-|.|+..-++++
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999999998542 24799999999999999999999999999999999999999999996655543
No 300
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.35 E-value=4.1e-06 Score=100.48 Aligned_cols=65 Identities=25% Similarity=0.249 Sum_probs=51.3
Q ss_pred CCccCcHHHHHHHHHhh---cC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPIL---DG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 72 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~---~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 72 (930)
|| +.++-|.+.+..+. ++ +.++|.||||+|||++|++|++..... .+.++||-+.|++|-.|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--------~~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--------EKKKLVISTATVALQEQ 93 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--------cCCeEEEEcCCHHHHHH
Confidence 45 47999999666543 33 568999999999999999999876543 24458999999999998
Q ss_pred HHH
Q psy15524 73 TLE 75 (930)
Q Consensus 73 ~~~ 75 (930)
+..
T Consensus 94 L~~ 96 (697)
T PRK11747 94 LVS 96 (697)
T ss_pred HHh
Confidence 863
No 301
>KOG2340|consensus
Probab=98.30 E-value=6.9e-06 Score=88.88 Aligned_cols=209 Identities=22% Similarity=0.273 Sum_probs=135.6
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCC-CChH--HHHHHHHHHHHHHhhCCc---------C-------------CCCCCe
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQT-GSGK--TLAYAIPIIQKLQEMRPK---------I-------------SRKDGI 58 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apT-GsGK--T~~~~l~~l~~l~~~~~~---------~-------------~~~~~~ 58 (930)
..+|+.|.+.+..+.+.+|++..-.| +.|+ +-+|++.+++++.+.+.. + +.-..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 35899999999999999998754333 2344 667999999998764321 0 111247
Q ss_pred EEEEEcccHHHHHHHHHHHHHHhhhcCCce---------eEEeeCCC--------chHHHHH------------------
Q psy15524 59 YAVIILPTRELALQTLEIFTKLCKSFTWIV---------PSWLTGGE--------KMKSEKA------------------ 103 (930)
Q Consensus 59 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~---------~~~~~g~~--------~~~~~~~------------------ 103 (930)
++|||+|+|+-|..+.+.+..+..+...-+ -.-+.|.. .......
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 899999999999999999988843322100 00111100 0011111
Q ss_pred ---Hhc---CCCcEEEEChHHHHHHHhcCC----Ccc-CCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEE
Q psy15524 104 ---RIR---KGISILVATPGRLLDHCKHTE----TLK-FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSIL 172 (930)
Q Consensus 104 ---~l~---~~~~Ilv~Tp~~l~~~l~~~~----~~~-l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~ 172 (930)
.+. ...|||||+|=.|.-.+.+.+ .++ ++.+.++|||.+|.|+...++ .+..|++.|...+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P------- 446 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQP------- 446 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCc-------
Confidence 111 236899999988866665322 222 688999999999999865543 3455566664433
Q ss_pred EEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHHHHhhhccccC
Q psy15524 173 LSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252 (930)
Q Consensus 173 lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~~~l~~~~l~~ 252 (930)
......++++|+.+.+++..+.. +|+++||+-..+....+...+++|
T Consensus 447 ------------~k~h~~DfSRVR~wyL~~qsr~~---------------------rQtl~Fs~y~~~~~nS~fn~~c~N 493 (698)
T KOG2340|consen 447 ------------SKQHDVDFSRVRMWYLDGQSRYF---------------------RQTLLFSRYSHPLFNSLFNQYCQN 493 (698)
T ss_pred ------------ccccCCChhheehheeccHHHHH---------------------HHHHHHHhhccHHHHHHHHHhhhh
Confidence 12245678888888888766543 399999988888777777777665
Q ss_pred C
Q psy15524 253 P 253 (930)
Q Consensus 253 ~ 253 (930)
.
T Consensus 494 ~ 494 (698)
T KOG2340|consen 494 M 494 (698)
T ss_pred h
Confidence 4
No 302
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.27 E-value=9.1e-06 Score=97.10 Aligned_cols=144 Identities=19% Similarity=0.250 Sum_probs=84.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH-----HHhhh-cCC--ceeEEee
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT-----KLCKS-FTW--IVPSWLT 93 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~-----~~~~~-~~~--~~~~~~~ 93 (930)
++.+.++||+|||.+|+-.++..... .+-.+.||+||+.+.-..+.+-++ ..+.. ++. +....+.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~-------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK-------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH-------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 68999999999999999988776544 223569999999998777665544 22221 221 3333343
Q ss_pred CCC-------c-hHHHHHHhcC------CCcEEEEChHHHHHHHh-cC---------CCccC---CCc-cEEEEcccccc
Q psy15524 94 GGE-------K-MKSEKARIRK------GISILVATPGRLLDHCK-HT---------ETLKF---SKV-EHLVLDEADRI 145 (930)
Q Consensus 94 g~~-------~-~~~~~~~l~~------~~~Ilv~Tp~~l~~~l~-~~---------~~~~l---~~l-~~vViDE~h~~ 145 (930)
++. . .......... ...|+|.|-+.+..-.. +. ...++ ... =.||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 332 1 1111111111 47899999998865321 00 00111 111 36899999999
Q ss_pred cccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 146 LDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 146 ~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
-..+- .... +...+|.. ++.+|||.+.
T Consensus 214 ~~~~k--~~~~----i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRDNK--FYQA----IEALKPQM-IIRFGATFPD 240 (986)
T ss_pred CcchH--HHHH----HHhcCccc-EEEEeeecCC
Confidence 54321 2222 23333332 5779999976
No 303
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.26 E-value=1.2e-05 Score=96.15 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=54.5
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC--Cc-----e--EE-EEeCcccHHHHHHHHh
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH--EG-----S--SL-LFLIPSEVKLVEELQN 777 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~--~g-----~--~~-~~~~~~e~~~~~~l~~ 777 (930)
..+.+++-+++.+|.|-|+|-.++-.....|...-.|.+||.-|.-- .| . -+ ++...++..|++.|+.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHH
Confidence 57899999999999999999999999988999999999999998621 12 1 22 3344567789988875
No 304
>KOG4150|consensus
Probab=98.17 E-value=4.4e-06 Score=90.59 Aligned_cols=137 Identities=7% Similarity=-0.122 Sum_probs=98.0
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
+....+|.+++..+..|+++++...|.+||++||.+.....+.. .+....+++.|++++++++.+.+.-....
T Consensus 285 E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~V~~~~ 357 (1034)
T KOG4150|consen 285 ESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL-------CHATNSLLPSEMVEHLRNGSKGQVVHVEV 357 (1034)
T ss_pred cchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc-------CcccceecchhHHHHhhccCCceEEEEEe
Confidence 45678999999999999999999999999999999988776654 22344799999999999877654333322
Q ss_pred cCCce--eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCC---CccCCCccEEEEcccccccc
Q psy15524 84 FTWIV--PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE---TLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 84 ~~~~~--~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~---~~~l~~l~~vViDE~h~~~~ 147 (930)
.+..+ +.-.+.+..........+.+.+++++.|..+.....-.. ...+-++.++++||+|.+..
T Consensus 358 I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~ 426 (1034)
T KOG4150|consen 358 IKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF 426 (1034)
T ss_pred hhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec
Confidence 22221 122344445555666677889999999998876543211 12245678899999998764
No 305
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.15 E-value=9.1e-05 Score=86.80 Aligned_cols=128 Identities=18% Similarity=0.150 Sum_probs=89.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|++.|.-.--.+..| -+..+.||-|||+++.+|++-..+. |..|=|+...--||..=++.+..+...+
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 4677777666555555 4899999999999999998654433 4447777888889888888888887777
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhcC-----CCccCCCccEEEEccccccc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKHT-----ETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~l~~vViDE~h~~~ 146 (930)
+ +.+++...+........ .-.|||++||...+- +.|+.. .....+.+.+.||||+|.++
T Consensus 147 G-LsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 147 G-LSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred C-CceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 7 67776665544333222 235899999987753 334321 11225778999999999865
No 306
>KOG0385|consensus
Probab=98.11 E-value=2.9e-05 Score=87.83 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=103.6
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.|+++|.+-+..+. +|-|.|+.-.-|-|||+- .++.+..+...+. .+|+ -||++|.--|.+ ++++++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~----~~GP-fLVi~P~StL~N-W~~Ef~rf 239 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG----IPGP-FLVIAPKSTLDN-WMNEFKRF 239 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC----CCCC-eEEEeeHhhHHH-HHHHHHHh
Confidence 68999999887754 688999999999999986 3444444433111 1233 799999877754 66677777
Q ss_pred hhhcCCceeEEeeCCCchHHHH-H-H-hcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEK-A-R-IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~-~-~-l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
+ +.+.+.+++|........ + . .....||+|+|.|..+.-- ..+.--..+++||||||++-... ..+..+
T Consensus 240 ~---P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~ 311 (971)
T KOG0385|consen 240 T---PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNEK--SKLSKI 311 (971)
T ss_pred C---CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcchh--hHHHHH
Confidence 5 557788888876432221 1 1 2346899999999986531 22223457899999999985432 223344
Q ss_pred HHHHhhcCCCceEEEEEeecCC
Q psy15524 158 LEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
++.+.. ...+++|.||-.
T Consensus 312 lr~f~~----~nrLLlTGTPLQ 329 (971)
T KOG0385|consen 312 LREFKT----DNRLLLTGTPLQ 329 (971)
T ss_pred HHHhcc----cceeEeeCCccc
Confidence 444433 347999999954
No 307
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.09 E-value=1.2e-05 Score=97.14 Aligned_cols=69 Identities=29% Similarity=0.375 Sum_probs=57.3
Q ss_pred ccCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
..+++.|.+.+..+. .|+.+++.||||+|||++|++|++...... +.++++.++|+.|..|..++...
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--------~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--------GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--------CCcEEEECCCHHHHHHHHHhhcc
Confidence 469999999996643 455699999999999999999999887542 34599999999999999988766
Q ss_pred H
Q psy15524 80 L 80 (930)
Q Consensus 80 ~ 80 (930)
+
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 4
No 308
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.08 E-value=9e-06 Score=95.54 Aligned_cols=130 Identities=20% Similarity=0.208 Sum_probs=93.5
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
|++.|--..-.+ .+.-+..+.||.|||+++.+|++-.... |..|-|++++..||.+-++.+..+...++
T Consensus 77 ~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 77 HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 677776654333 4568999999999999999998644332 45599999999999999999999988888
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhcC-----CCccCCCccEEEEccccccc-ccC
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG 149 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~ 149 (930)
+.+++..++.+...... .-.+||+++|...+- +.++.. .....+.+.+.||||+|.++ |..
T Consensus 146 -Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 146 -LTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred -CceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 77887766655543332 234799999986542 233221 11225778999999999865 443
No 309
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=1.8e-05 Score=95.90 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=59.2
Q ss_pred CCccCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPI----LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~----~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
=|+.++|.|.+.+..+ ..|.++++.+|||+|||++.+.|++....... ...+++|.+.|..=..|..+++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~------~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP------EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc------ccccEEEEcccchHHHHHHHHH
Confidence 3666799999988764 46889999999999999999999998875421 2356888889988888888888
Q ss_pred HHH
Q psy15524 78 TKL 80 (930)
Q Consensus 78 ~~~ 80 (930)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 874
No 310
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.05 E-value=3e-05 Score=80.86 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=51.8
Q ss_pred CCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
++++-|.+|+..++...+ .+|.||.|+|||.+ +..++..+...........+.++|+++||..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367889999999999998 99999999999965 344444442100001124578899999999999999998887
No 311
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.01 E-value=1.6e-05 Score=82.88 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=51.0
Q ss_pred cCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|++.|.+|+..++.... .+|.||.|+|||..... ++..+...........+.++|+++|+..-+.++.+++.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999999888 99999999999965433 333331100000123466799999999999999999888
No 312
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.01 E-value=9.3e-06 Score=80.69 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=41.7
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
+...|+-|..++.+++...-+++.+|.|||||+.++..+++.+.. +.-.+++|+-|+.+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-------GEYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-------TS-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-------CCCcEEEEEecCCCC
Confidence 345788999999999976779999999999999999999988875 234567888888654
No 313
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.01 E-value=0.00018 Score=79.58 Aligned_cols=230 Identities=22% Similarity=0.211 Sum_probs=133.8
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHhhhcCCcee----EEeeC---------------CCchHHHHHHhc----------
Q psy15524 56 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVP----SWLTG---------------GEKMKSEKARIR---------- 106 (930)
Q Consensus 56 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~----~~~~g---------------~~~~~~~~~~l~---------- 106 (930)
..+++|||+|+|.-|.++++.+.++......+.. .--.| +.....+.....
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 3588999999999999999998887643110000 00001 111112222111
Q ss_pred --------------CCCcEEEEChHHHHHHHhcC----CCc-cCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCC
Q psy15524 107 --------------KGISILVATPGRLLDHCKHT----ETL-KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 167 (930)
Q Consensus 107 --------------~~~~Ilv~Tp~~l~~~l~~~----~~~-~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~ 167 (930)
...|||||+|=.|...+... ... -|+.+.++|||.||.|+...+. .+..+++.+...+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~-Hv~~v~~~lN~~P-- 192 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWE-HVLHVFEHLNLQP-- 192 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHH-HHHHHHHHhccCC--
Confidence 13579999998887766531 222 2799999999999988754432 2445555553332
Q ss_pred ceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHHHHhhh
Q psy15524 168 FQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247 (930)
Q Consensus 168 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~~~l~~ 247 (930)
......+++.++.+.+|...+ ..+|+++||+..++.+..+..
T Consensus 193 -----------------~~~~~~DfsRVR~w~Ldg~a~---------------------~~RQtii~S~~~~pe~~slf~ 234 (442)
T PF06862_consen 193 -----------------KKSHDTDFSRVRPWYLDGQAK---------------------YYRQTIIFSSFQTPEINSLFN 234 (442)
T ss_pred -----------------CCCCCCCHHHHHHHHHcCcch---------------------heeEeEEecCCCCHHHHHHHH
Confidence 122346677777666654432 345999999999999999998
Q ss_pred ccccCC-eeeccCCcccccCCCcccccCCCceeEEEEcCc-------chhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 248 MTLQNP-IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-------KLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 248 ~~l~~~-~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
..+.|. ..+.........+.. ......+.|.+...+. +.+......-+..... .....+.+|||++|-
T Consensus 235 ~~~~N~~G~v~~~~~~~~~g~i--~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~--~~~~~~~~LIfIPSY 310 (442)
T PF06862_consen 235 RHCQNYAGKVRLKPPYEASGVI--SQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK--RDSKMSGTLIFIPSY 310 (442)
T ss_pred hhCcCccceEEEeeccccceee--eccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh--hccCCCcEEEEecch
Confidence 877664 233322222110111 1234557777775431 2344444432221111 144568999999997
Q ss_pred cchhhhHHHHh
Q psy15524 320 DMADYHTELLS 330 (930)
Q Consensus 320 ~~~~~l~~~L~ 330 (930)
=+=-.+-.+|+
T Consensus 311 fDfVRlRN~lk 321 (442)
T PF06862_consen 311 FDFVRLRNYLK 321 (442)
T ss_pred hhhHHHHHHHH
Confidence 66666666665
No 314
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.97 E-value=4.6e-05 Score=76.54 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=46.3
Q ss_pred CCCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 485 (930)
++++-|.+++..++.+.+ .++.++.|+|||.+ +..+...+.. .|.++++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 468889999999986654 77889999999975 4445555543 367899999999988876655
No 315
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.96 E-value=4.3e-05 Score=91.23 Aligned_cols=162 Identities=24% Similarity=0.230 Sum_probs=94.1
Q ss_pred cHHHHHHHHHhhc--------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 7 TTVQQLSIQPILD--------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 7 ~~~Q~~ai~~~~~--------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
..||-+|+..+.+ |-=++-.|.||+|||++=.-.+ ..+.. ...|.+..|-.-.|.|..|..+.++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd------~~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRD------DKQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCC------CCCCceEEEEccccceeccchHHHH
Confidence 4689999987654 2226777999999999743333 22222 2335566777777777777777776
Q ss_pred HHhhhcCCceeEEeeCCCc-------------------------------------------hHHHHHHhcC--------
Q psy15524 79 KLCKSFTWIVPSWLTGGEK-------------------------------------------MKSEKARIRK-------- 107 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~-------------------------------------------~~~~~~~l~~-------- 107 (930)
+... ++.-...++.|+.. .......+..
T Consensus 483 ~rL~-L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 483 TRLN-LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HhcC-CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 6543 22222222233221 1111111111
Q ss_pred CCcEEEEChHHHHHHHhc--CCCccCC--C--ccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 108 GISILVATPGRLLDHCKH--TETLKFS--K--VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 108 ~~~Ilv~Tp~~l~~~l~~--~~~~~l~--~--l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+++|||+..++..... .+...+. . =+.|||||+|.+-..-+ ..+.+++..+... ..+++++|||+|+
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~l--G~~VlLmSATLP~ 636 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLL--GSRVLLSSATLPP 636 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHc--CCCEEEEeCCCCH
Confidence 146999999999877632 1122112 1 26799999998743322 3355555544443 3589999999986
No 316
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.94 E-value=0.00044 Score=79.81 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC--CCCce-----------EEEEeCcccHHHHHHH
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV--GHEGS-----------SLLFLIPSEVKLVEEL 775 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~--g~~g~-----------~~~~~~~~e~~~~~~l 775 (930)
...+.+++-.++-+|.|=|+|=.++-.....|..+=.|.+||.-|. ...|. -.+++..+|..|++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999995 22232 2345556788899998
Q ss_pred Hh
Q psy15524 776 QN 777 (930)
Q Consensus 776 ~~ 777 (930)
+.
T Consensus 562 qk 563 (985)
T COG3587 562 QK 563 (985)
T ss_pred HH
Confidence 75
No 317
>COG4889 Predicted helicase [General function prediction only]
Probab=97.93 E-value=2.8e-05 Score=88.75 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=82.4
Q ss_pred ccCcHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDG-----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g-----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+.|+|+|+.|+.++.+| +.-|+ +..|+|||+..+--+ ..+.. .++|+|+|+++|..|..+.+.
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLI-MAcGTGKTfTsLkis-Eala~----------~~iL~LvPSIsLLsQTlrew~ 227 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLI-MACGTGKTFTSLKIS-EALAA----------ARILFLVPSISLLSQTLREWT 227 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEE-EecCCCccchHHHHH-HHHhh----------hheEeecchHHHHHHHHHHHh
Confidence 46999999999998875 22344 445999999865443 33322 459999999999999988776
Q ss_pred HHhhhcCCceeEEeeCCCchHHH-----------------------HH--HhcCCCcEEEEChHHHHHHHhcCCCccCCC
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSE-----------------------KA--RIRKGISILVATPGRLLDHCKHTETLKFSK 133 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~-----------------------~~--~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~ 133 (930)
.-.. ++ +....++++.....- .. .-..+--|+++|.+.+...-.. ....+..
T Consensus 228 ~~~~-l~-~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~ 304 (1518)
T COG4889 228 AQKE-LD-FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDE 304 (1518)
T ss_pred hccC-cc-ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCC
Confidence 5432 22 333333333211100 00 1112345899999887554332 3345788
Q ss_pred ccEEEEcccccccc
Q psy15524 134 VEHLVLDEADRILD 147 (930)
Q Consensus 134 l~~vViDE~h~~~~ 147 (930)
+++||-||||+...
T Consensus 305 fDliicDEAHRTtG 318 (1518)
T COG4889 305 FDLIICDEAHRTTG 318 (1518)
T ss_pred ccEEEecchhcccc
Confidence 99999999998643
No 318
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.92 E-value=0.00022 Score=85.59 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=50.6
Q ss_pred HhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 514 IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 514 ~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
+.....|+++||.-+..-+.. +.+.++.+..+|+||||++.+..-+..+.++. ....+..-+.+|||.+..
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rly---r~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLY---RQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred HhhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHH---HHhCCCcceEEecCCCcc
Confidence 345678999999987544433 56789999999999999997665554444444 333345568899999763
No 319
>KOG0390|consensus
Probab=97.91 E-value=0.00022 Score=83.34 Aligned_cols=162 Identities=20% Similarity=0.199 Sum_probs=104.6
Q ss_pred ccCcHHHHHHHHHhh---cCC-------cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL---DGG-------DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~---~g~-------~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
..++|+|++.+.-+. .|. .++++-..|+|||+. +++.++.+.+..+.... --.++|||+|. .|+..+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~-~~~k~lVV~P~-sLv~nW 313 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP-LINKPLVVAPS-SLVNNW 313 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc-cccccEEEccH-HHHHHH
Confidence 368999999998754 232 367777789999996 55566666654332110 12568999994 689999
Q ss_pred HHHHHHHhhhcCCceeEEeeCCCch--HHHHHHhcC-----CCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc
Q psy15524 74 LEIFTKLCKSFTWIVPSWLTGGEKM--KSEKARIRK-----GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~l~~-----~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~ 146 (930)
.++|.+|... ..+....++|.... ......+.- ...|++-+.+.+.+.+.. +....+++||.||.|++-
T Consensus 314 kkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 314 KKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCcc
Confidence 9999999864 23455556666553 222222211 146888899988766543 446789999999999874
Q ss_pred ccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 147 DQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 147 ~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
... ..+...+..+ ...+.|+||.||-
T Consensus 390 N~~--s~~~kaL~~l----~t~rRVLLSGTp~ 415 (776)
T KOG0390|consen 390 NSD--SLTLKALSSL----KTPRRVLLTGTPI 415 (776)
T ss_pred chh--hHHHHHHHhc----CCCceEEeeCCcc
Confidence 321 1122222222 2347899999994
No 320
>KOG0924|consensus
Probab=97.88 E-value=0.00078 Score=75.50 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh-hcCCcee
Q psy15524 11 QLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVP 89 (930)
Q Consensus 11 ~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~-~~~~~~~ 89 (930)
.+.+..+.++.-++|++.||||||.- +| +.+.... -.+.+-+-+--|.|.-|..++++..+-.. .++ ..+
T Consensus 362 ~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edG----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG-~~V 432 (1042)
T KOG0924|consen 362 DQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDG----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLG-DTV 432 (1042)
T ss_pred HHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhcc----cccCCeeeecCchHHHHHHHHHHHHHHhCCccc-ccc
Confidence 33444445566699999999999985 22 3332211 01122344556999988888887665542 222 111
Q ss_pred EEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc
Q psy15524 90 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR 144 (930)
Q Consensus 90 ~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~ 144 (930)
+.-..=++ .......|=+.|-+.|+.-.. ..-.+.+.+.||+||||.
T Consensus 433 GYsIRFEd------vT~~~T~IkymTDGiLLrEsL--~d~~L~kYSviImDEAHE 479 (1042)
T KOG0924|consen 433 GYSIRFED------VTSEDTKIKYMTDGILLRESL--KDRDLDKYSVIIMDEAHE 479 (1042)
T ss_pred ceEEEeee------cCCCceeEEEeccchHHHHHh--hhhhhhheeEEEechhhh
Confidence 11110000 011234588999999887543 333478899999999994
No 321
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.85 E-value=0.00016 Score=84.25 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=83.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 102 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 102 (930)
.+|-||.|||||.+..-++-+.+. .++.++|+++..++|+.+...+++...-. + .......++.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~--------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-g-Fv~Y~d~~~~------ 115 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK--------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-G-FVNYLDSDDY------ 115 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc--------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-c-ceeeeccccc------
Confidence 789999999999876555544332 24567999999999999999999765321 1 2111111110
Q ss_pred HHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHH---HHHHHHhh-cCCCceEEEEEeec
Q psy15524 103 ARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA---EFLEILKK-QKPQFQSILLSATL 177 (930)
Q Consensus 103 ~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~---~i~~~l~~-~~~~~~~i~lSAT~ 177 (930)
.+. ...+-+++..+.|.+... -.+.+.++|||||+-..+..-|.+.++ .++..+.. .....++|.+-|++
T Consensus 116 -~i~~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 116 -IIDGRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred -cccccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 011 134677777777765532 236678999999998776553333222 22222221 11223788888888
Q ss_pred CC
Q psy15524 178 TP 179 (930)
Q Consensus 178 ~~ 179 (930)
+.
T Consensus 191 n~ 192 (824)
T PF02399_consen 191 ND 192 (824)
T ss_pred CH
Confidence 65
No 322
>KOG0387|consensus
Probab=97.83 E-value=0.00061 Score=77.95 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=97.8
Q ss_pred ccCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
..|.++|++.+..+.+ +..-|+--.-|-|||.- +++.|..+..... -...+|||||. .++.|+.++|..
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k-----~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGK-----LTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccc-----ccCceEEEccH-HHHHHHHHHHHH
Confidence 4688999999988653 45678888899999975 2222222222100 11339999996 578899999999
Q ss_pred HhhhcCCceeEEeeCCCch---------HHHHHHh----cCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc
Q psy15524 80 LCKSFTWIVPSWLTGGEKM---------KSEKARI----RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~---------~~~~~~l----~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~ 146 (930)
++.. ..+..+++.... ......+ ..+..|+|+|.+.+.-. ...+.-...+++|+||.|.+-
T Consensus 277 w~p~---~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 277 WWPP---FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred hCcc---eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---CcccccccccEEEecCccccc
Confidence 8753 566666665542 1111111 12357999998765321 122333457899999999986
Q ss_pred ccCcHHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 147 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 147 ~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
...-. +...+..+ ...+.|.||.||-.-
T Consensus 351 Npns~--islackki----~T~~RiILSGTPiQN 378 (923)
T KOG0387|consen 351 NPNSK--ISLACKKI----RTVHRIILSGTPIQN 378 (923)
T ss_pred CCccH--HHHHHHhc----cccceEEeeCccccc
Confidence 54422 22222222 345789999999543
No 323
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.79 E-value=0.00033 Score=70.25 Aligned_cols=153 Identities=17% Similarity=0.231 Sum_probs=96.4
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhc---CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILD---GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~---~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
.|+.. .-|.+++=.+. .++ -.++.|.+....+.+ |+|.+.++-+|.|||-+ ++|++..+.. ++..
T Consensus 4 ~w~p~-~~P~wLl~E~e--~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA-------dg~~ 71 (229)
T PF12340_consen 4 NWDPM-EYPDWLLFEIE--SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA-------DGSR 71 (229)
T ss_pred CCCch-hChHHHHHHHH--cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc-------CCCc
Confidence 35555 55666665554 233 689999999988886 57899999999999988 8999988875 3345
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcce--EEEeCCCchH--------HHHHHHhcCCcEEEECchhHHHhhhcc--
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVP--SWLTGGEKMK--------SEKARIRKGISILVATPGRLLDHCKHT-- 535 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~--~~~~gg~~~~--------~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-- 535 (930)
-+.+++| ++|..|.++.+...++..-.... .-+....... ...+.......|+++||+.++...-..
T Consensus 72 LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 72 LVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHH
Confidence 5677777 58999999998877654221111 1111111111 111123345679999999875532110
Q ss_pred ----CCc-----------ccccceEEEEecchhhhh
Q psy15524 536 ----ETL-----------KFSKVEHLVLDEADRILD 556 (930)
Q Consensus 536 ----~~~-----------~~~~l~~lVlDEah~l~~ 556 (930)
... .+++-..=|+||+|.++.
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 000 123344569999997764
No 324
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.77 E-value=7.1e-05 Score=73.10 Aligned_cols=106 Identities=19% Similarity=0.331 Sum_probs=73.3
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcC-CCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc--ccccccCCCC--ccE
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLG-ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD--VAARGLDLPL--VDW 731 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~-~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~--~~~~GlDip~--v~~ 731 (930)
+++++|||+|.+..+.+.+.+..... .++.++. . ...++..+++.|+++...||+|+. .+++|+|+|+ ++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 68999999999999999888876431 1334442 2 345789999999999999999998 9999999996 678
Q ss_pred EEEecCCC----Ch--------------------------hhHHhhhcccccCCCCceEEEEeCc
Q psy15524 732 IVQYTAPS----SS--------------------------TDYVHRVGRTARVGHEGSSLLFLIP 766 (930)
Q Consensus 732 VI~~~~p~----s~--------------------------~~y~qr~GRagR~g~~g~~~~~~~~ 766 (930)
||...+|. ++ ....|-+||+-|...+-.+++++.+
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99888774 11 1235889999998877555555554
No 325
>KOG0925|consensus
Probab=97.77 E-value=0.0014 Score=70.88 Aligned_cols=147 Identities=17% Similarity=0.184 Sum_probs=74.5
Q ss_pred HHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEE
Q psy15524 12 LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 91 (930)
Q Consensus 12 ~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 91 (930)
+-+..+..++-+++++.||||||.-.=-.++...... ...+..--|.+--+.+++.+...... +..+-
T Consensus 54 ~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~v~CTQprrvaamsva~RVadEMD----v~lG~ 121 (699)
T KOG0925|consen 54 EFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTGVACTQPRRVAAMSVAQRVADEMD----VTLGE 121 (699)
T ss_pred HHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------ccceeecCchHHHHHHHHHHHHHHhc----cccch
Confidence 3344455677899999999999975222222222110 12367777988888888877655432 11111
Q ss_pred eeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH-HHHHHHHHHHhhcCCCceE
Q psy15524 92 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQS 170 (930)
Q Consensus 92 ~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~-~~~~~i~~~l~~~~~~~~~ 170 (930)
-.|-. .. +......+.=+-++|-++|++-..+. -.+...+.+|+||||.= ... +.+..++..+...+|+.++
T Consensus 122 EVGys-Ir-fEdC~~~~T~Lky~tDgmLlrEams~--p~l~~y~viiLDeahER---tlATDiLmGllk~v~~~rpdLk~ 194 (699)
T KOG0925|consen 122 EVGYS-IR-FEDCTSPNTLLKYCTDGMLLREAMSD--PLLGRYGVIILDEAHER---TLATDILMGLLKEVVRNRPDLKL 194 (699)
T ss_pred hcccc-cc-ccccCChhHHHHHhcchHHHHHHhhC--cccccccEEEechhhhh---hHHHHHHHHHHHHHHhhCCCceE
Confidence 11110 00 00000000012245666665544322 23678899999999931 111 2233334444344456666
Q ss_pred EEEEeec
Q psy15524 171 ILLSATL 177 (930)
Q Consensus 171 i~lSAT~ 177 (930)
|-+|||+
T Consensus 195 vvmSatl 201 (699)
T KOG0925|consen 195 VVMSATL 201 (699)
T ss_pred EEeeccc
Confidence 6666665
No 326
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.74 E-value=0.00024 Score=71.37 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=45.5
Q ss_pred cCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~--~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 76 (930)
+|++-|++|+..++... -+++.+|.|+|||.+ +..+...+.. .+.++++++||..-+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 58999999999997544 378889999999975 3345455543 246699999999988876655
No 327
>KOG0391|consensus
Probab=97.73 E-value=0.00011 Score=86.34 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=102.5
Q ss_pred CCCHHHHHhHHhhhc----CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~----~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.++.+|...+..+.. +-|-|+.-..|-|||.. .|.++.++...+..| |+ -|||+||- ....|.-+|+++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnW----GP-HLIVVpTs-viLnWEMElKRw 687 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNW----GP-HLIVVPTS-VILNWEMELKRW 687 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCC----CC-ceEEeech-hhhhhhHHHhhh
Confidence 456778887766543 34689999999999987 667777776654433 33 68999994 455688888888
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcC---CcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKG---ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~---~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
+-. +.....+|......+++.-+.. .+|.|+++-.+.+-+. .|.-.+++|+||||||++-++.- ..+..+
T Consensus 688 cPg---lKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~---AFkrkrWqyLvLDEaqnIKnfks-qrWQAl 760 (1958)
T KOG0391|consen 688 CPG---LKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT---AFKRKRWQYLVLDEAQNIKNFKS-QRWQAL 760 (1958)
T ss_pred CCc---ceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH---HHHhhccceeehhhhhhhcchhH-HHHHHH
Confidence 754 3444566765555555443322 5688888876655443 35557899999999999966542 223333
Q ss_pred HHHHhhcCccceEEEEccccC
Q psy15524 567 LEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~SAT~~ 587 (930)
++.- ..|.++++.|+-
T Consensus 761 lnfn-----sqrRLLLtgTPL 776 (1958)
T KOG0391|consen 761 LNFN-----SQRRLLLTGTPL 776 (1958)
T ss_pred hccc-----hhheeeecCCch
Confidence 3322 345688888853
No 328
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.70 E-value=0.00032 Score=86.77 Aligned_cols=140 Identities=21% Similarity=0.130 Sum_probs=94.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 100 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 100 (930)
+.-+|+=-||||||+..+..+-..+.. ...+.++||+-.++|-.|..+.|..+........ ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHH
Confidence 458888889999999866555433322 3356799999999999999999999876533111 4455566
Q ss_pred HHHHhcCC-CcEEEEChHHHHHHHhcCCCccC-CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 101 EKARIRKG-ISILVATPGRLLDHCKHTETLKF-SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 101 ~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~~l-~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
..+.+..+ -.|+|+|-..+-........... ++=-.||+||||+- .++.....+-..+ ++...+|||+||-
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~----~~a~~~gFTGTPi 414 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKAL----KKAIFIGFTGTPI 414 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHh----ccceEEEeeCCcc
Confidence 66666655 48999999998777654211112 22346789999964 3333333333333 3468999999995
Q ss_pred C
Q psy15524 179 P 179 (930)
Q Consensus 179 ~ 179 (930)
.
T Consensus 415 ~ 415 (962)
T COG0610 415 F 415 (962)
T ss_pred c
Confidence 3
No 329
>KOG0389|consensus
Probab=97.69 E-value=7.5e-05 Score=84.96 Aligned_cols=157 Identities=19% Similarity=0.261 Sum_probs=100.7
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|-++|.--+..+. .+-+.|+.-.-|-|||.- .++.+..+.+.. .+|+ -|||||.--|-+ +.++|.+|
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g-----~~gp-HLVVvPsSTleN-WlrEf~kw 470 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG-----NPGP-HLVVVPSSTLEN-WLREFAKW 470 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC-----CCCC-cEEEecchhHHH-HHHHHHHh
Confidence 47889998887743 466789999999999964 445555554422 1232 689999876543 44455555
Q ss_pred hhhcCCceeEEeeCCCchHHHHHH-hcC---CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKAR-IRK---GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 156 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~-l~~---~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~ 156 (930)
|+.+.+-.++|........+. +.. .++|+++|...+...-.....+.-.++.++|+||+|.+-...- ..++.
T Consensus 471 ---CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S-eRy~~ 546 (941)
T KOG0389|consen 471 ---CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS-ERYKH 546 (941)
T ss_pred ---CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch-HHHHH
Confidence 566889999998865544433 222 4899999986654322222334456799999999998755432 11222
Q ss_pred HHHHHhhcCCCceEEEEEeecC
Q psy15524 157 FLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
++.. + --..++||.||=
T Consensus 547 LM~I----~-An~RlLLTGTPL 563 (941)
T KOG0389|consen 547 LMSI----N-ANFRLLLTGTPL 563 (941)
T ss_pred hccc----c-ccceEEeeCCcc
Confidence 2221 1 125799999984
No 330
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.68 E-value=5.6e-05 Score=75.16 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=42.1
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHH
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L 69 (930)
++..++.|+.++.++++..-+++.+|.|+|||+.++..+++.+... .-.+.++.-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-------~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-------EYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-------S-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-------CCcEEEEEecCCCC
Confidence 4567999999999999888899999999999999999999888652 12357888888863
No 331
>KOG0923|consensus
Probab=97.66 E-value=0.0015 Score=73.13 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=86.5
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH-hhhcC
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL-CKSFT 85 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~-~~~~~ 85 (930)
+++-.+.+.++.+..=++|.+.||||||. .+| +.+....- ...|.++-+--|.|--|..++.+..+- +..++
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGy---tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGY---TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhccc---ccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 44555666677777789999999999997 455 33333111 122334667779998888887765443 32222
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc-ccccCcHHHHHHHHHHHhhc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-ILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~-~~~~~~~~~~~~i~~~l~~~ 164 (930)
..++.-. . .........-|-++|-++|+.-+. ....+...+.|||||||. -+. -+.+-.++..+...
T Consensus 340 -~eVGYsI-----R-FEdcTSekTvlKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL~---TDILfgLvKDIar~ 407 (902)
T KOG0923|consen 340 -HEVGYSI-----R-FEDCTSEKTVLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTLH---TDILFGLVKDIARF 407 (902)
T ss_pred -cccceEE-----E-eccccCcceeeeeecchhHHHHHh--ccccccceeEEEeehhhhhhhh---hhHHHHHHHHHHhh
Confidence 1111100 0 000111234577999999988665 345688999999999993 111 11122333333333
Q ss_pred CCCceEEEEEeec
Q psy15524 165 KPQFQSILLSATL 177 (930)
Q Consensus 165 ~~~~~~i~lSAT~ 177 (930)
+|+.+++..|||.
T Consensus 408 RpdLKllIsSAT~ 420 (902)
T KOG0923|consen 408 RPDLKLLISSATM 420 (902)
T ss_pred CCcceEEeecccc
Confidence 4455555555554
No 332
>KOG1000|consensus
Probab=97.62 E-value=0.00053 Score=74.11 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=99.1
Q ss_pred ccCcHHHHHHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~-~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
..|-|+|.+-+...+ .|..+++.-.-|-|||.-++.-+...... .+ .||++|-. |-..+.+.|+.+..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE---------wp-lliVcPAs-vrftWa~al~r~lp 265 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE---------WP-LLIVCPAS-VRFTWAKALNRFLP 265 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc---------Cc-EEEEecHH-HhHHHHHHHHHhcc
Confidence 467899999998765 67889999999999999765444322221 11 78888864 55667777888765
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.+.. +.++.++.+... .+....-|.|.+.+.+..+-.. +.-...+.||+||.|++-+.. -.....+...++
T Consensus 266 s~~p--i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk 336 (689)
T KOG1000|consen 266 SIHP--IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLK 336 (689)
T ss_pred cccc--eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhccc-hhhhhhhhhHHH
Confidence 4432 333334432211 1122346889999887654321 223458999999999875543 223555555555
Q ss_pred hcCCCceEEEEEeecCC
Q psy15524 163 KQKPQFQSILLSATLTP 179 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~ 179 (930)
... ++|+||.||..
T Consensus 337 ~ak---hvILLSGTPav 350 (689)
T KOG1000|consen 337 VAK---HVILLSGTPAV 350 (689)
T ss_pred Hhh---heEEecCCccc
Confidence 544 79999999974
No 333
>KOG1803|consensus
Probab=97.61 E-value=0.0002 Score=79.73 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
.+.+-|++|+....+.++ .++++|+|+|||.+-..-+.+.+.. +.++||.+||.+-+..+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 567779999999998877 7889999999999855555555443 6889999999999998888643
No 334
>KOG4439|consensus
Probab=97.59 E-value=0.00017 Score=81.06 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=102.2
Q ss_pred cCcHHHHHHHHHhhc-----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc-CCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD-----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK-ISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.+-|+|+.++..+.- +..-|+...-|-|||+..+..++..-...+.. ........+|||||- .|+.|+..++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 478999999977652 34578888899999997665555443322211 111112259999995 68899999988
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHH----Hh-cCCCccCCCc--cEEEEcccccccccCcH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH----CK-HTETLKFSKV--EHLVLDEADRILDQGYE 151 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~----l~-~~~~~~l~~l--~~vViDE~h~~~~~~~~ 151 (930)
.....- .+.+..++|........+.+ ..+||+|+|..-+.+. .. ....-.+.++ ..||+||||.+-...-
T Consensus 404 ~rl~~n-~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~t- 480 (901)
T KOG4439|consen 404 RRLEQN-ALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNT- 480 (901)
T ss_pred HHHhhc-ceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccch-
Confidence 887643 36677777766433333333 4589999998655431 00 0011223333 5699999998865432
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 152 RDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 152 ~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+-...+..|...+ .-++|+||-.
T Consensus 481 -q~S~AVC~L~a~~----RWclTGTPiq 503 (901)
T KOG4439|consen 481 -QCSKAVCKLSAKS----RWCLTGTPIQ 503 (901)
T ss_pred -hHHHHHHHHhhcc----eeecccCccc
Confidence 2233344555444 5678999853
No 335
>PRK10536 hypothetical protein; Provisional
Probab=97.52 E-value=0.0015 Score=66.91 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=45.1
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre 477 (930)
.++...+..|...+..+.++.-+++.+|+|+|||+......++.+.. +.-.+++|.-|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~-------~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH-------KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCeeEEEEeCCCCC
Confidence 35666788899999988887779999999999999887777766643 12234555556644
No 336
>KOG1002|consensus
Probab=97.49 E-value=0.00044 Score=74.49 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=95.9
Q ss_pred cCcHHHHHHHHHhhcCC-----cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGG-----DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~-----~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|.|+|++-+-.+.... .-++.-.-|.|||.-.+.-++..+ ++..+||++|+.+|+ |+.+++..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----------~ra~tLVvaP~VAlm-QW~nEI~~ 252 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----------DRAPTLVVAPTVALM-QWKNEIER 252 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----------ccCCeeEEccHHHHH-HHHHHHHH
Confidence 46789999876654322 357778899999987666555432 233499999999986 56667766
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC-CCc-----------cCCCcc--EEEEcccccc
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-ETL-----------KFSKVE--HLVLDEADRI 145 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~-----------~l~~l~--~vViDE~h~~ 145 (930)
+.. +...+..++|..... ..+.+ .++|++++|...+-+..+.. ..+ .+.+++ -||+||||.+
T Consensus 253 ~T~--gslkv~~YhG~~R~~-nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 253 HTS--GSLKVYIYHGAKRDK-NIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNI 328 (791)
T ss_pred hcc--CceEEEEEecccccC-CHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccc
Confidence 654 446666666665433 22333 35899999998886655431 111 133444 4899999988
Q ss_pred cccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 146 LDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 146 ~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
-+..- .-.+.+..|+.. ....||.||
T Consensus 329 K~R~s--nTArAV~~L~tt----~rw~LSGTP 354 (791)
T KOG1002|consen 329 KDRQS--NTARAVFALETT----YRWCLSGTP 354 (791)
T ss_pred ccccc--cHHHHHHhhHhh----hhhhccCCc
Confidence 65331 122233333333 356788887
No 337
>KOG1803|consensus
Probab=97.46 E-value=0.00039 Score=77.56 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=54.2
Q ss_pred cCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.+.+-|+.|+..+.+.++ .++++|+|+|||.....-+.+.+.+ +.++||.+||.+-+..+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHhc
Confidence 578899999999888766 7999999999999877777666654 4569999999999988888654
No 338
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.44 E-value=0.0011 Score=78.75 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=52.7
Q ss_pred CCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..+++.|..|+..++.. ...++.+|+|+|||.+. ..++..+.. .|.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~--------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK--------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35788899999999887 45889999999999764 444444332 256899999999999999888876
No 339
>KOG1016|consensus
Probab=97.44 E-value=0.014 Score=66.64 Aligned_cols=108 Identities=20% Similarity=0.330 Sum_probs=85.0
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcC---------------CCceEEEecCCCCHHHHHHHHHHhhcCC---CcEEEeccc
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLG---------------ENIAFFKLHGSMSQSERTEVFKTFRSVK---SGVLICTDV 719 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~---------------~~~~~~~lhg~~~~~~R~~v~~~F~~~~---~~vLv~T~~ 719 (930)
.++|||..+.-..+.+.+.+.+.-. ++...+.+.|..+..+|++.+++|.+.- .-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 4777777777766666666654311 1345678899999999999999997532 258999999
Q ss_pred cccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeC
Q psy15524 720 AARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 720 ~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
..-|+++=..+-+|.+|+-+++.--.|.+-|.-|.|+..-|+++-.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 9999999777788888888889888999999999999887776544
No 340
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.42 E-value=0.0005 Score=76.22 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=60.6
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
++|.+..|||||+.++ -++..+.. ...+..+++++++..|...+.+.+..... . +
T Consensus 4 ~~I~G~aGTGKTvla~-~l~~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~---------~------- 58 (352)
T PF09848_consen 4 ILITGGAGTGKTVLAL-NLAKELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYN--P---------K------- 58 (352)
T ss_pred EEEEecCCcCHHHHHH-HHHHHhhc------cccCCceEEEEecchHHHHHHHHHhhhcc--c---------c-------
Confidence 7899999999999843 33433311 13477799999999999888777755430 0 0
Q ss_pred HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc
Q psy15524 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 557 (930)
Q Consensus 512 ~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~ 557 (930)
.....+..|..+..... .........++||+||||++.+.
T Consensus 59 -----~~~~~~~~~~~~i~~~~-~~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 59 -----LKKSDFRKPTSFINNYS-ESDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred -----hhhhhhhhhHHHHhhcc-cccccCCcCCEEEEehhHhhhhc
Confidence 01122333444433322 12234577999999999999873
No 341
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.41 E-value=0.0024 Score=66.54 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=96.7
Q ss_pred CCCHHHHHhHHhhhc----------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILD----------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~----------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
.++..|-+++-...+ ....++--.||.||.-...--|++++.+ ...++|+++.+-.|-....
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------GRKRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------CCCceEEEECChhhhhHHH
Confidence 456667776644331 2448889999999988766667777654 2456999999999999999
Q ss_pred HHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc--CCccc--------cc-ceEEEEecch
Q psy15524 484 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKF--------SK-VEHLVLDEAD 552 (930)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~--~~~~~--------~~-l~~lVlDEah 552 (930)
+.++.++.....+. .+..-. .. .. ..-...|+++|...|....... ....+ .+ =.+||+||+|
T Consensus 109 RDl~DIG~~~i~v~--~l~~~~-~~-~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 109 RDLRDIGADNIPVH--PLNKFK-YG-DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHHHhCCCcccce--echhhc-cC-cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 99998876532111 111100 00 00 1113458999988876654211 01111 11 2379999999
Q ss_pred hhhhcCcH----HHHHHHHHHHhhcCccceEEEEccccCHHH
Q psy15524 553 RILDQGYE----RDIAEFLEILKKQKPQFQSILLSATLTPAV 590 (930)
Q Consensus 553 ~l~~~g~~----~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~ 590 (930)
..-+..-. ......+..|...-|+.++|.+|||-..+.
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 88655321 111111222222234678999999975533
No 342
>PF13245 AAA_19: Part of AAA domain
Probab=97.39 E-value=0.00063 Score=56.24 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=40.1
Q ss_pred HHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 423 IQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 423 i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
+...+.+.. ++|.+|.|||||.+.+-.+...+... ...+.++++++||+..+.++.+.+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-----~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-----ADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-----cCCCCeEEEECCCHHHHHHHHHHH
Confidence 443333444 55699999999977444444444211 112778999999999999988887
No 343
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.38 E-value=0.0021 Score=75.44 Aligned_cols=143 Identities=20% Similarity=0.232 Sum_probs=84.4
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
..++|+.|+-..+.++-.++.+++|+|||.+ +.-++..+.... ......+++.+||..-|..+.+.+.......+
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 3589999999999988899999999999986 334444443311 12346788999999999988887765443221
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-----CcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-----TLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-----~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
. .. .. ......-..|--||+....... ..+.-.++++|+|||-++. -..+..+++.
T Consensus 228 ~------~~-----~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~a 288 (615)
T PRK10875 228 L------TD-----EQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDA 288 (615)
T ss_pred c------ch-----hh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHh
Confidence 0 00 00 0011111233333332211111 1122346899999999663 2344555555
Q ss_pred HhhcCccceEEEEcc
Q psy15524 570 LKKQKPQFQSILLSA 584 (930)
Q Consensus 570 l~~~~~~~q~vl~SA 584 (930)
++ +..++|++--
T Consensus 289 l~---~~~rlIlvGD 300 (615)
T PRK10875 289 LP---PHARVIFLGD 300 (615)
T ss_pred cc---cCCEEEEecc
Confidence 54 4677777653
No 344
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.37 E-value=0.0038 Score=65.16 Aligned_cols=167 Identities=16% Similarity=0.077 Sum_probs=105.5
Q ss_pred cCcHHHHHHHHHhhc----------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
.|+..|-+++-.+.. +...++--.||.||.-...--+++...+.+ .++|+++.+..|-.+..
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--------~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--------KRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--------CceEEEECChhhhhHHH
Confidence 478999999876541 235788888999998876666666665522 24999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC--CCccC---------CCccEEEEcccc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT--ETLKF---------SKVEHLVLDEAD 143 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--~~~~l---------~~l~~vViDE~h 143 (930)
+.++.++... +.+..+..-... ....-.-.||++|...|....... ....+ +.=.+||+||||
T Consensus 109 RDl~DIG~~~--i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 109 RDLRDIGADN--IPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHHHhCCCc--ccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 9999887542 222211111000 001223469999998887664211 01111 122589999999
Q ss_pred cccccCc----HHHHHHHHHHHhhcCCCceEEEEEeecCCCccccc
Q psy15524 144 RILDQGY----ERDIAEFLEILKKQKPQFQSILLSATLTPATCWCK 185 (930)
Q Consensus 144 ~~~~~~~----~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~ 185 (930)
.+-...- .......+..|.+.-|+.+++..|||...+...+.
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~Nma 228 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNMA 228 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCceee
Confidence 9865432 12333344445555577889999999976544443
No 345
>KOG1802|consensus
Probab=97.34 E-value=0.0013 Score=73.62 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=61.5
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..++.+++.-|..|+.++|+..=-++++|.|+|||.+-.--+++.+.. .+..+||++|+---+.|+++.+.+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHHHh
Confidence 468889999999999999998889999999999999865555555443 355699999999999999988876
Q ss_pred hh
Q psy15524 489 LC 490 (930)
Q Consensus 489 ~~ 490 (930)
-+
T Consensus 477 tg 478 (935)
T KOG1802|consen 477 TG 478 (935)
T ss_pred cC
Confidence 54
No 346
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.32 E-value=0.0018 Score=77.01 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=53.0
Q ss_pred cCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.+++.|..|+..++.. ..++|.||+|+|||....-.+.+.+.. +.++|+++||..-+.++.+++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 5799999999998876 578999999999998655444444432 34699999999999999888876
No 347
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.32 E-value=0.0029 Score=74.15 Aligned_cols=142 Identities=23% Similarity=0.270 Sum_probs=84.2
Q ss_pred HHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCc
Q psy15524 417 TVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 496 (930)
Q Consensus 417 ~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~ 496 (930)
++|+.|+..++.++-.++.++.|+|||.+ +..++..+....+. ..+.++++.+||---|..+.+.+.........
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 68999999999998899999999999986 44455444432111 11357999999998888877766553322110
Q ss_pred ceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-----CcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 497 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-----TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 497 ~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-----~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
. .. ......+-..|-.+++....... ..+...+++||||||-++.- ..+..+++.++
T Consensus 223 -----~-----~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al~ 284 (586)
T TIGR01447 223 -----A-----EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKALP 284 (586)
T ss_pred -----c-----hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhcC
Confidence 0 00 00111122344444432211100 11233589999999997642 34555666554
Q ss_pred hcCccceEEEEcc
Q psy15524 572 KQKPQFQSILLSA 584 (930)
Q Consensus 572 ~~~~~~q~vl~SA 584 (930)
+..++|++--
T Consensus 285 ---~~~rlIlvGD 294 (586)
T TIGR01447 285 ---PNTKLILLGD 294 (586)
T ss_pred ---CCCEEEEECC
Confidence 3677777643
No 348
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.30 E-value=0.0018 Score=65.12 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=86.0
Q ss_pred cCcHHHHHHHHHhhc---CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILD---GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~---g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.+++.|.+....+.+ |.|.+.+.-.|.|||.+ ++|++..+.... ...+.+++| ++|..|..+.+....
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg-------~~LvrviVp-k~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG-------SRLVRVIVP-KALLEQMRQMLRSRL 93 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC-------CcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 368999999988775 67999999999999987 788887776522 233556666 669999999988877
Q ss_pred hhcCCceeEE--eeCCCchH-H----H---HHHhcCCCcEEEEChHHHHHHHhcC------CCcc-----------CCCc
Q psy15524 82 KSFTWIVPSW--LTGGEKMK-S----E---KARIRKGISILVATPGRLLDHCKHT------ETLK-----------FSKV 134 (930)
Q Consensus 82 ~~~~~~~~~~--~~g~~~~~-~----~---~~~l~~~~~Ilv~Tp~~l~~~l~~~------~~~~-----------l~~l 134 (930)
+..-...+.. .+-..... . . .+.....-.|+++|||.++++.-.. +... ++.-
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~ 173 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEH 173 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 6533222221 11111111 1 1 1112234569999999987653210 1000 2334
Q ss_pred cEEEEcccccccccCc
Q psy15524 135 EHLVLDEADRILDQGY 150 (930)
Q Consensus 135 ~~vViDE~h~~~~~~~ 150 (930)
..=|+||+|.++.-.|
T Consensus 174 ~rdilDEsDe~L~~k~ 189 (229)
T PF12340_consen 174 SRDILDESDEILSVKY 189 (229)
T ss_pred CCeEeECchhccCcce
Confidence 4468999998876544
No 349
>KOG1802|consensus
Probab=97.28 E-value=0.0014 Score=73.48 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=58.2
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|...|+.-|..|+.+++...=.|+++|+|+|||..-.--+++.+.. .++.+||.+|+.--+.|+++.+.+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred CchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHHHhcC
Confidence 5678899999999999999899999999999998755444444332 24559999999999999988886654
No 350
>PF13245 AAA_19: Part of AAA domain
Probab=97.25 E-value=0.0013 Score=54.37 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=41.6
Q ss_pred HHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 13 SIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 13 ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
|+...+.+.+ ++|.+|.|||||....--+...+.... .++..+++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-----~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-----DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-----CCCCeEEEECCCHHHHHHHHHHH
Confidence 4554444444 556999999999775555555443211 11456999999999999999888
No 351
>PRK10536 hypothetical protein; Provisional
Probab=97.19 E-value=0.0031 Score=64.62 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=45.3
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
|+...+..|...+.++..+..+++.+|+|+|||+.....+++.+... .-.++++.-|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-------~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-------DVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-------CeeEEEEeCCCCC
Confidence 45667899999999998888899999999999999888877666431 1223555556654
No 352
>KOG0953|consensus
Probab=97.03 E-value=0.0018 Score=71.32 Aligned_cols=106 Identities=23% Similarity=0.166 Sum_probs=74.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 102 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 102 (930)
++=++||.||||.- +++++... ...++--|.+-||.++++++++.+ +.+..++|.+......
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~a---------ksGvycGPLrLLA~EV~~r~na~g-----ipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSA---------KSGVYCGPLRLLAHEVYDRLNALG-----IPCDLLTGEERRFVLD 255 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhh---------ccceecchHHHHHHHHHHHhhhcC-----CCccccccceeeecCC
Confidence 66789999999986 56666542 237899999999999999998876 4455566665432221
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 103 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 103 ~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
. ...+..+-||-|+..- -...+..||||+.+|.|..++..+.+.
T Consensus 256 ~--~~~a~hvScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrA 299 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRA 299 (700)
T ss_pred C--CCcccceEEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHH
Confidence 1 1225677788765411 235789999999999998877665543
No 353
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.98 E-value=0.0047 Score=74.60 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=48.9
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
..+++.|++|+..+..++-+++.++.|+|||.+ +-.+++.+... .+...+++++||-.-|..+.+
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~------~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL------GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc------CCCceEEEEeCchHHHHHHHH
Confidence 368999999999999888899999999999975 34555544431 111568889999888865543
No 354
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.94 E-value=0.0026 Score=70.49 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=61.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 101 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (930)
-++|.+..|||||++.+--+... .. ...+..++++++..+|...+.+.+..... .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QN------SEEGKKVLYLCGNHPLRNKLREQLAKKYN--P---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hc------cccCCceEEEEecchHHHHHHHHHhhhcc--c----------------
Confidence 37899999999999865544433 11 12355699999999999988887755430 0
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 102 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 102 ~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
......+..|..+.+... .........++|||||||++.+
T Consensus 58 -----~~~~~~~~~~~~~i~~~~-~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYS-ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -----chhhhhhhhhHHHHhhcc-cccccCCcCCEEEEehhHhhhh
Confidence 001223334444443332 1223457899999999999987
No 355
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.80 E-value=0.0034 Score=68.65 Aligned_cols=125 Identities=18% Similarity=0.087 Sum_probs=76.5
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
+|+-|.++|.. ....++|.|..|||||.+.+--++..+.... .+..++|++++|+..|.++.+.+...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 57889999988 6788999999999999986666666665421 2345699999999999999999988765321
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhh-hccCCcccccceEEEEecchh
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC-KHTETLKFSKVEHLVLDEADR 553 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l-~~~~~~~~~~l~~lVlDEah~ 553 (930)
... ...............+.|+|-..+...+ +......--.-++-++|+...
T Consensus 74 ~~~-------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~~ 126 (315)
T PF00580_consen 74 QES-------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEEQ 126 (315)
T ss_dssp HCC-------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHHH
T ss_pred ccc-------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchhc
Confidence 100 0001111222234578889977764433 221111111234567777773
No 356
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.78 E-value=0.015 Score=68.32 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=49.2
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.++|+.|+..++.++-+++.++.|+|||.+. ..++..+....+. ..+.++++.+||-.=+..+.+.+...
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 3789999999999989999999999999863 2333333321111 11246899999988777777665543
No 357
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.78 E-value=0.013 Score=68.95 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=50.2
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.++|+.|+...+.++-++|.+++|+|||.+.. -++..+.... ......+++.+||..=+..+.+.+....
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~----~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLA----DGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhc----CCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 58999999999998899999999999998632 2223332211 0123458889999988888777665543
No 358
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=96.78 E-value=0.0024 Score=76.40 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCc
Q psy15524 8 TVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 87 (930)
Q Consensus 8 ~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 87 (930)
|+-.+.+..+.-...-|..+.||-|||+++.+|++-..+. |..|=|+...-=||..=.+++..+...++ +
T Consensus 139 ~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~---------G~gVHvVTvNDYLA~RDaewm~p~y~flG-L 208 (1025)
T PRK12900 139 PYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALT---------GRGVHVVTVNDYLAQRDKEWMNPVFEFHG-L 208 (1025)
T ss_pred ccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHc---------CCCcEEEeechHhhhhhHHHHHHHHHHhC-C
Confidence 3334444554444556899999999999999998766554 23366666666688877777777777666 7
Q ss_pred eeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-ccC
Q psy15524 88 VPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG 149 (930)
Q Consensus 88 ~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~ 149 (930)
.+++...+..... +.-.-.|||.+||..-+ .+.|+.+ ...-.+.+.+.||||+|.++ |..
T Consensus 209 tVg~i~~~~~~~~--Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLIDeA 275 (1025)
T PRK12900 209 SVGVILNTMRPEE--RREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLIDEA 275 (1025)
T ss_pred eeeeeCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhhccc
Confidence 7777755433332 23344689999998665 2222221 12224778999999999764 433
No 359
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.75 E-value=0.0027 Score=76.00 Aligned_cols=130 Identities=19% Similarity=0.178 Sum_probs=85.3
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcC
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 85 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 85 (930)
++|+-.+.+..+.-...-+..+.||-|||+++.+|++-..+. |..+-|+...-=||.-=++++..+...++
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~---------GkgVHvVTVNDYLA~RDaewmgply~fLG 238 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT---------GNGVHVVTVNDYLAKRDSEWMGPLYEFHG 238 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc---------CCCcEEEEechhhhhccHHHHHHHHHHhC
Confidence 344444455555555667999999999999999998766554 23366666666788777777777776666
Q ss_pred CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHhcC-----CCccCCCccEEEEccccccc
Q psy15524 86 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCKHT-----ETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 86 ~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~-----~~~~l~~l~~vViDE~h~~~ 146 (930)
+.+++........ ..+.-.-.|||.+||..-+- +.|+.+ .....+.+.+.||||+|.++
T Consensus 239 -Lsvg~i~~~~~~~-~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 239 -LSVDCIDKHQPNS-EARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred -CceeecCCCCCCH-HHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 6777664422222 22333446899999986652 222221 12225678999999999764
No 360
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.72 E-value=0.009 Score=73.50 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=46.8
Q ss_pred CCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.+++-|.+|+..++.+++ +++.++.|+|||.+ +-.+.+.+.. .|..++.++||---|..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHH
Confidence 689999999999998776 78999999999985 4444444432 377899999997666544
No 361
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.70 E-value=0.0054 Score=71.19 Aligned_cols=144 Identities=14% Similarity=0.197 Sum_probs=77.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc-----CCceeEEeeCCC
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF-----TWIVPSWLTGGE 96 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-----~~~~~~~~~g~~ 96 (930)
|+=|.+.||+|||.||+-.|...=.. -+-.+-+|+||+.+.-.-++........++ .......+....
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~-------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKK-------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHH-------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 68889999999999998877643221 234678999999997655444443333322 212222222222
Q ss_pred chHHHHHHhcCCCcEEEEChHHHHHH------HhcCCCccCCC--------------c-cEEEEcccccccccCcHHHHH
Q psy15524 97 KMKSEKARIRKGISILVATPGRLLDH------CKHTETLKFSK--------------V-EHLVLDEADRILDQGYERDIA 155 (930)
Q Consensus 97 ~~~~~~~~l~~~~~Ilv~Tp~~l~~~------l~~~~~~~l~~--------------l-~~vViDE~h~~~~~~~~~~~~ 155 (930)
......-.....+.+++.|......- +.+ ......+ + -.|||||=|.|.... ..+.
T Consensus 149 ~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~-~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~--k~~~ 225 (985)
T COG3587 149 DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINS-ESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDD--KTYG 225 (985)
T ss_pred HHHHHhhccCCCceEEEEehhhhccccccccccch-hhhcccCccccccCHHHHHHhcCCEEEecChhhcccch--HHHH
Confidence 22222222234577888886554322 111 1111111 1 268999999997631 1111
Q ss_pred HHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
.+.. +.. .-++=++||....
T Consensus 226 ~i~~-l~p----l~ilRfgATfkd~ 245 (985)
T COG3587 226 AIKQ-LNP----LLILRFGATFKDE 245 (985)
T ss_pred HHHh-hCc----eEEEEecccchhh
Confidence 1111 111 1267799999754
No 362
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.67 E-value=0.0053 Score=67.13 Aligned_cols=71 Identities=25% Similarity=0.199 Sum_probs=55.6
Q ss_pred CcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhh
Q psy15524 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 83 (930)
Q Consensus 6 l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 83 (930)
|++-|.+++.. ...+++|.|+.|||||.+.+.-++..+.... .+..++|++++|++.+.++.+++......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 68899999988 5669999999999999987777766665432 22445999999999999999999987654
No 363
>KOG1132|consensus
Probab=96.62 E-value=0.01 Score=69.34 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhC---c----ccCC-------------------
Q psy15524 414 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR---P----KISR------------------- 463 (930)
Q Consensus 414 ~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~---~----~~~~------------------- 463 (930)
+|++.|..-+..++ ...+.++.+|||+|||++.+-..+....... + ...+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 56888887666655 4578999999999999985544443322211 0 0000
Q ss_pred -------CCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 464 -------KDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 464 -------~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..-+++.|-+-|..=..|+.+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 123566777777777778888776643
No 364
>KOG1132|consensus
Probab=96.62 E-value=0.01 Score=69.36 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=53.7
Q ss_pred cCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc---------C-------CC----------
Q psy15524 5 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---------I-------SR---------- 54 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~---------~-------~~---------- 54 (930)
+|++.|..-+..++. ..|.++..|||+|||++.+-..+......+.+ . ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 589999988877664 56899999999999999776666655433210 0 00
Q ss_pred -C------CCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 55 -K------DGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 55 -~------~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
. .-+++.|-+-|..-..|+.+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 12456677777877888888887764
No 365
>KOG0392|consensus
Probab=96.56 E-value=0.018 Score=69.24 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=101.9
Q ss_pred cCcHHHHHHHHHh--hc--CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPI--LD--GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~--~~--g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.|+.+|++-+..+ ++ +-+-|+|---|-|||+-.+--+.......+.+...-...=.||+||. .|+--+..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 4788999988764 32 34789999999999997543333333332222211112228999996 4777777777776
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+. ..++..+.|+.......+.-.++.+|+|++.+.+.+-... +.-....|+|+||-|-|-... ..+...+..
T Consensus 1054 ~p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN~k--tkl~kavkq 1125 (1549)
T KOG0392|consen 1054 FP---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKNSK--TKLTKAVKQ 1125 (1549)
T ss_pred cc---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecchH--HHHHHHHHH
Confidence 54 3666667777665555555556689999999887532211 112356799999999874322 223333444
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
++.. +.+-||.||-.
T Consensus 1126 L~a~----hRLILSGTPIQ 1140 (1549)
T KOG0392|consen 1126 LRAN----HRLILSGTPIQ 1140 (1549)
T ss_pred Hhhc----ceEEeeCCCcc
Confidence 4433 47889999953
No 366
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.56 E-value=0.011 Score=55.10 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=12.6
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
++-+++.|++|+|||.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 345899999999999863
No 367
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.54 E-value=0.34 Score=65.03 Aligned_cols=241 Identities=15% Similarity=0.202 Sum_probs=128.3
Q ss_pred CCCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+++-|.+++..++.+.+ .++.++.|+|||.+ +-.+++.+. ..|..+++++||-.-+.++.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~--------~~G~~V~~lAPTgrAA~~L~e~~g~~A~ 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLAS--------EQGYEIQIITAGSLSAQELRQKIPRLAS 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHH--------hcCCeEEEEeCCHHHHHHHHHHhcchhh
Confidence 588999999999998755 88999999999975 445554443 2477899999998877666544221100
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
........+..+ .-..|..+++ . ....+..-++||||||-++.. ..+..++....
T Consensus 500 --------------Ti~~~l~~l~~~--~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~ 554 (1960)
T TIGR02760 500 --------------TFITWVKNLFND--DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLSN----NELLKLIDKAE 554 (1960)
T ss_pred --------------hHHHHHHhhccc--ccchhHHHhh---c--ccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHh
Confidence 000111111110 1112222222 1 222345678999999997753 33455555443
Q ss_pred hcCccceEEEEccc--cC-----HHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHH
Q psy15524 572 KQKPQFQSILLSAT--LT-----PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644 (930)
Q Consensus 572 ~~~~~~q~vl~SAT--~~-----~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 644 (930)
. .+.++|++--+ ++ +....+....+ +. +...... .. ...+ .........+...++..
T Consensus 555 ~--~garvVlvGD~~QL~sV~aG~~f~~L~~~gv--~t-~~l~~i~---rq------~~~v--~i~~~~~~~r~~~ia~~ 618 (1960)
T TIGR02760 555 Q--HNSKLILLNDSAQRQGMSAGSAIDLLKEGGV--TT-YAWVDTK---QQ------KASV--EISEAVDKLRVDYIASA 618 (1960)
T ss_pred h--cCCEEEEEcChhhcCccccchHHHHHHHCCC--cE-EEeeccc---cc------Ccce--eeeccCchHHHHHHHHH
Confidence 2 36788877544 22 22333333221 11 1111100 00 0011 11122233444444444
Q ss_pred HHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc-------CCCceEEEecC-CCCHHHHHHHHHHhhcCC
Q psy15524 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL-------GENIAFFKLHG-SMSQSERTEVFKTFRSVK 710 (930)
Q Consensus 645 l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~-------~~~~~~~~lhg-~~~~~~R~~v~~~F~~~~ 710 (930)
...... ...+++|+..+.+....+...++..+ .+++.+..|.. .|++.++... ..|+.|.
T Consensus 619 y~~L~~-----~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 619 WLDLTP-----DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred HHhccc-----ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 333211 25578999999998888888776655 12344444433 5777777643 6666553
No 368
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.017 Score=60.35 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=19.1
Q ss_pred hcCCcEEEEccCCCchhHHhhHHHH
Q psy15524 427 LDGGDVLVRSQTGSGKTLAYAIPII 451 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~~lp~l 451 (930)
-.+.++++.+|+|+|||..+..-..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHH
Confidence 3568899999999999986444333
No 369
>KOG1805|consensus
Probab=96.50 E-value=0.012 Score=69.43 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccC
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 475 (930)
.+.|.+.+. -+..++.-|++|+-.++..+| .++.+=+|+|||.+ +..++..|.. .|.++|..+=|
T Consensus 657 ~~~p~~~~~-----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~--------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 657 VLIPKIKKI-----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVA--------LGKKVLLTSYT 722 (1100)
T ss_pred ccCchhhHH-----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHH--------cCCeEEEEehh
Confidence 355555553 234678899999999999888 88889999999987 3334444443 37789999988
Q ss_pred HHHHHHHHHHHHHhhccCCC----------cceEEEeCCCchH--HHHHHHhcCCcEEEECchhHHHhhhccCCcccccc
Q psy15524 476 RELALQTLEIFTKLCKSFTW----------IVPSWLTGGEKMK--SEKARIRKGISILVATPGRLLDHCKHTETLKFSKV 543 (930)
Q Consensus 476 reLa~Q~~~~~~~~~~~~~~----------~~~~~~~gg~~~~--~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l 543 (930)
..-+..+.-.++.....+-. +.-.+++.+.+.+ .......+...|+.||==-+. ...+..+.+
T Consensus 723 hsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~-----~plf~~R~F 797 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN-----HPLFVNRQF 797 (1100)
T ss_pred hHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC-----chhhhcccc
Confidence 88777776666554322100 0000111122111 122233345778888832221 133445779
Q ss_pred eEEEEecchhhh
Q psy15524 544 EHLVLDEADRIL 555 (930)
Q Consensus 544 ~~lVlDEah~l~ 555 (930)
++.|+|||-.++
T Consensus 798 D~cIiDEASQI~ 809 (1100)
T KOG1805|consen 798 DYCIIDEASQIL 809 (1100)
T ss_pred CEEEEccccccc
Confidence 999999999875
No 370
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.49 E-value=0.023 Score=68.81 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=46.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
.+++.|++|+..+..++-+++.++.|+|||.+. -.++..+.... +...+++++||-.-+..+.
T Consensus 323 ~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 323 GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC------CCceEEEEeCchHHHHHHH
Confidence 589999999999998888999999999999753 34444443311 1145888999988776443
No 371
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.48 E-value=0.02 Score=69.52 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=45.9
Q ss_pred CCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
.+++-|..|+..++.+ +-+++.++.|+|||.. +-.+.+.+.. .|..+++++||--.|..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA--------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh--------CCCeEEEEeCcHHHHHHHH
Confidence 5889999999999875 4478999999999975 3344444432 3678999999977665543
No 372
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.47 E-value=0.0093 Score=62.96 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=49.8
Q ss_pred hcCCCCCCCHHHHHhHHhhhcCC-c-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 408 EGMNITQVTTVQQLSIQPILDGG-D-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 408 ~~~~~~~~~~iQ~~~i~~il~~~-d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+.+|+...+..|.-|+..++... + |.+.++.|||||+.++.+.++..... +.-.++||-=|+..+-
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~------~~y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER------KRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH------hhhceEEEecCCcCcc
Confidence 34688888889999999998654 3 78899999999999999888877653 2234466666775554
No 373
>KOG0921|consensus
Probab=96.38 E-value=0.027 Score=65.60 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=96.0
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH-hhhcCCceeEEeeCC
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL-CKSFTWIVPSWLTGG 95 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~g~ 95 (930)
+....-+++-+.||+|||.-+.--+|+.+....... -..+.+--|++--+.-+.+++..- +...+... +
T Consensus 390 v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~----~~na~v~qprrisaisiaerva~er~e~~g~tv------g 459 (1282)
T KOG0921|consen 390 VAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA----SFNAVVSQPRRISAISLAERVANERGEEVGETC------G 459 (1282)
T ss_pred HhcCceeeEeecccccchhHHHHHHHHHHhhccccc----cccceeccccccchHHHHHHHHHhhHHhhcccc------c
Confidence 334455899999999999999888888887643322 223666679988888887765443 22222111 1
Q ss_pred CchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEe
Q psy15524 96 EKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175 (930)
Q Consensus 96 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSA 175 (930)
.+.......-+.---|+.||-+-+++.+.+ -+..+.++++||.|.---.+ .-+..+++-+....++.+++++||
T Consensus 460 y~vRf~Sa~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~--dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 460 YNVRFDSATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDT--DFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred ccccccccccccccceeeeccchhhhhhhh----cccccccccchhhhhhccch--HHHHHHHHhhhccchhhhhhhhhc
Confidence 111111111111125999999999988875 36788999999999643222 234556666677788899999999
Q ss_pred ecCC
Q psy15524 176 TLTP 179 (930)
Q Consensus 176 T~~~ 179 (930)
|+.-
T Consensus 534 tIdT 537 (1282)
T KOG0921|consen 534 TIDT 537 (1282)
T ss_pred ccch
Confidence 9964
No 374
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.0044 Score=68.91 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=74.6
Q ss_pred EEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH--
Q psy15524 434 VRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK-- 511 (930)
Q Consensus 434 v~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-- 511 (930)
..++||||||++..-.|++.... + -..-|+.|...........-+..-...--........+|+...-..
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-------g-yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-------G-YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-------c-hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 46899999999977777766543 1 1224555555444443333222111100000111223333211100
Q ss_pred --HHHhcCCcEEEECchhHHHhhhccCC--c---ccccceE-EEEecchhhhhcC---------cHHHHHHHHHHHhhcC
Q psy15524 512 --ARIRKGISILVATPGRLLDHCKHTET--L---KFSKVEH-LVLDEADRILDQG---------YERDIAEFLEILKKQK 574 (930)
Q Consensus 512 --~~~~~~~~Ilv~Tp~rl~~~l~~~~~--~---~~~~l~~-lVlDEah~l~~~g---------~~~~l~~i~~~l~~~~ 574 (930)
..-..+..|.++|...|...+.+.+. + .+.+..+ ++-||||++.... -...++..+.......
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n 153 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN 153 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC
Confidence 01234678999999998766655432 2 2444444 5679999986322 1112222222222233
Q ss_pred ccceEEEEccccCH
Q psy15524 575 PQFQSILLSATLTP 588 (930)
Q Consensus 575 ~~~q~vl~SAT~~~ 588 (930)
++--++.+|||.+.
T Consensus 154 kd~~~lef~at~~k 167 (812)
T COG3421 154 KDNLLLEFSATIPK 167 (812)
T ss_pred CCceeehhhhcCCc
Confidence 45557789999984
No 375
>KOG1805|consensus
Probab=96.33 E-value=0.018 Score=67.94 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=80.6
Q ss_pred ccCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
..|+.-|++|+..+++-+| .||.+=+|+|||......+ ..+.. .|.++|+.+-|..=+..+.-.++....
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~--------~gkkVLLtsyThsAVDNILiKL~~~~i 738 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA--------LGKKVLLTSYTHSAVDNILIKLKGFGI 738 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH--------cCCeEEEEehhhHHHHHHHHHHhccCc
Confidence 3688999999999887666 7888889999998644433 33332 255699999998888777777766643
Q ss_pred hcCC----------ceeEEeeCCC--chHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 83 SFTW----------IVPSWLTGGE--KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 83 ~~~~----------~~~~~~~g~~--~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
.+-. +.-.+...+. ..........+.+.|+.+|=-.+.+ ..+..+++++.|||||-.++.
T Consensus 739 ~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 739 YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhhccccCEEEEcccccccc
Confidence 2110 0000001111 1112222334557788888322221 334467899999999987753
No 376
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.32 E-value=0.015 Score=64.75 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=43.2
Q ss_pred CCHHHHHhHHhh------hcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 415 VTTVQQLSIQPI------LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 415 ~~~iQ~~~i~~i------l~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
+++-|++++..+ .++..+++.++-|+|||.. +-.+..... ..+..+++++||---|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc-------cccceEEEecchHHHHHhc
Confidence 567788888877 5677899999999999974 333333322 3467899999997776554
No 377
>PHA02533 17 large terminase protein; Provisional
Probab=96.30 E-value=0.051 Score=62.99 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=89.5
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|.|+|+..+..+..++-.++..+-..|||.+....++..... .++..+++++|+.+-+..+++.++.+....
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 4789999999887666667888999999999877655544432 224579999999999999999998776654
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+.......... ....-.+.++..|.+.|. +.....-.+..++++||+|.+.+ +...+..+...+..
T Consensus 132 P~l~~~~i~~~---~~~~I~l~NGS~I~~lss--------~~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~las- 197 (534)
T PHA02533 132 PDFLQPGIVEW---NKGSIELENGSKIGAYAS--------SPDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISS- 197 (534)
T ss_pred HHHhhcceeec---CccEEEeCCCCEEEEEeC--------CCCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHc-
Confidence 42211000000 000011234455555442 11222334577899999997644 22333334444433
Q ss_pred CCCceEEEEEee
Q psy15524 165 KPQFQSILLSAT 176 (930)
Q Consensus 165 ~~~~~~i~lSAT 176 (930)
....+++..|..
T Consensus 198 g~~~r~iiiSTp 209 (534)
T PHA02533 198 GRSSKIIITSTP 209 (534)
T ss_pred CCCceEEEEECC
Confidence 222345444444
No 378
>KOG0386|consensus
Probab=96.29 E-value=0.0064 Score=71.65 Aligned_cols=157 Identities=19% Similarity=0.254 Sum_probs=98.4
Q ss_pred cCcHHHHHHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
++.++|..-+..+.+ +-|-++.-.+|-|||..- +..+..+...+. ..|+ -||++|+--|.+ +..+|..|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~----~~GP-~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ----MQGP-FLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc----cCCC-eEEeccccccCC-chhhcccc
Confidence 688999988877542 347899999999999864 444445554332 2234 699999988876 34455555
Q ss_pred hhhcCCceeEEeeCCCchH--HHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMK--SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~--~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~ 158 (930)
.. .+....+.|..... -......+..+||++|.+-+.. ....+.--+..++||||.|+|-. ..-.+-
T Consensus 467 aP---Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKN-----a~~KLt 535 (1157)
T KOG0386|consen 467 AP---SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKN-----AICKLT 535 (1157)
T ss_pred cc---ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccc-----hhhHHH
Confidence 43 24444444443221 1122334568999999987754 11222223457899999999853 223444
Q ss_pred HHHhhcCCCceEEEEEeecCC
Q psy15524 159 EILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+.......+.+++|.||..
T Consensus 536 ~~L~t~y~~q~RLLLTGTPLQ 556 (1157)
T KOG0386|consen 536 DTLNTHYRAQRRLLLTGTPLQ 556 (1157)
T ss_pred HHhhccccchhhhhhcCChhh
Confidence 445445556678999999964
No 379
>KOG0384|consensus
Probab=96.24 E-value=0.033 Score=67.36 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=97.0
Q ss_pred ccCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.+|+.+|-+-+..++ .+.|+|+.-.-|-|||+- .+..|..+.... ...|+ .||++|.--+. .+.+.|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~----~~~gp-flvvvplst~~-~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL----QIHGP-FLVVVPLSTIT-AWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh----hccCC-eEEEeehhhhH-HHHHHHHH
Confidence 578999999887654 688999999999999975 223333332211 01233 68888876544 35566777
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHh----cC-----CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARI----RK-----GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l----~~-----~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+. . +++.++.|........+.. .. .++++++|.+.++.-... +.--...+++|||||++-...
T Consensus 442 w~-~---mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~- 513 (1373)
T KOG0384|consen 442 WT-D---MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDE- 513 (1373)
T ss_pred Hh-h---hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchH-
Confidence 75 2 6677777776544333322 12 378999999988653221 122345789999999985321
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+...+..+... ..+++|.||-.
T Consensus 514 -~~l~~~l~~f~~~----~rllitgTPlQ 537 (1373)
T KOG0384|consen 514 -SKLYESLNQFKMN----HRLLITGTPLQ 537 (1373)
T ss_pred -HHHHHHHHHhccc----ceeeecCCCcc
Confidence 1222223333222 47899999964
No 380
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.0049 Score=67.81 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=73.4
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch---HHHHHHHhcC-CcEEEECchhHHHhhhccCCccc
Q psy15524 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKF 540 (930)
Q Consensus 465 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~ 540 (930)
.+.++||.+=|+-+|.+..+-+...+ +.+.++..+.+. ..-.+.++.| .+++|+- ++|+ ..+++
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~g-----ikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR--EGLDi 512 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELG-----IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDL 512 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcC-----ceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh--ccCCC
Confidence 46889999999999988888777755 345566665443 2234445544 8999997 3555 46778
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhc--CccceEEEEccccCHHHHHHH
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQ--KPQFQSILLSATLTPAVQRLA 594 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~--~~~~q~vl~SAT~~~~~~~l~ 594 (930)
..++++.|=.|| ..||-..-..++..+... +.+-++++..-.+++.++...
T Consensus 513 PEVsLVAIlDAD---KeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 513 PEVSLVAILDAD---KEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAI 565 (663)
T ss_pred cceeEEEEeecC---ccccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHH
Confidence 889998888898 566654444444444321 224456666666666554433
No 381
>PRK08181 transposase; Validated
Probab=96.22 E-value=0.054 Score=56.97 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=26.2
Q ss_pred CcHHHHHHHH----HhhcCCcEEEEcCCCChHHHHHHHHH
Q psy15524 6 VTTVQQLSIQ----PILDGGDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 6 l~~~Q~~ai~----~~~~g~~~lv~apTGsGKT~~~~l~~ 41 (930)
+...|..++. .+..+.+++++||+|+|||......+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia 127 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIG 127 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHH
Confidence 4566776663 23467899999999999998655443
No 382
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.21 E-value=0.014 Score=54.27 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPII 42 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l 42 (930)
.++.+++.||+|+|||.+...-+-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999987544443
No 383
>PHA02533 17 large terminase protein; Provisional
Probab=96.20 E-value=0.04 Score=63.88 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=89.5
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.|.|+|...+..+..++-.++..+=..|||.+...-++..+.. .++..+++++|+++-|..+++.++......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-------NKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 4789999998887666667888889999999876544433332 235689999999999999998888766544
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
+......+... ....-.+..|+.|.+.|-+ .....-.+..++|+||+|.+.+ +.+.+..+...+...
T Consensus 132 P~l~~~~i~~~---~~~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEW---NKGSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeec---CccEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcC
Confidence 32111000000 0000111344555444421 1122234577899999997643 334445555555432
Q ss_pred CccceEEEEccc
Q psy15524 574 KPQFQSILLSAT 585 (930)
Q Consensus 574 ~~~~q~vl~SAT 585 (930)
...+++.+|..
T Consensus 199 -~~~r~iiiSTp 209 (534)
T PHA02533 199 -RSSKIIITSTP 209 (534)
T ss_pred -CCceEEEEECC
Confidence 12355555555
No 384
>KOG0989|consensus
Probab=96.12 E-value=0.033 Score=57.62 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=30.7
Q ss_pred cccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 538 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 538 ~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.....+..+|+||||.|.... ...+.+.+.+.....++++...-+..
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda----q~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA----QAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCcceEEEEechhhhhHHH----HHHHHHHHhccccceEEEEEcCChhh
Confidence 345678999999999886443 23344444444446778887766543
No 385
>KOG0388|consensus
Probab=96.07 E-value=0.016 Score=65.56 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=97.1
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|.++|.+-+..+. .|-|-|+.-.-|-|||.- .+.++.++.....- -|+ -||++|.--| ..+.+++
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~nI----wGP-FLVVtpaStL----~NWaqEi 636 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHNI----WGP-FLVVTPASTL----HNWAQEI 636 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhccC----CCc-eEEeehHHHH----hHHHHHH
Confidence 45678887776654 588999999999999986 45555666653221 133 6788886554 3344445
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHh---------cCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARI---------RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE 151 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l---------~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~ 151 (930)
...++.+++.-++|+.......+.. ..+.||+|+|.+.++.-- ..+.--...|+|+|||..+-...-
T Consensus 637 srFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe---ky~qkvKWQYMILDEAQAIKSSsS- 712 (1185)
T KOG0388|consen 637 SRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE---KYLQKVKWQYMILDEAQAIKSSSS- 712 (1185)
T ss_pred HHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH---HHHHhhhhhheehhHHHHhhhhhh-
Confidence 5556677888888887765554442 234789999986653211 111112346899999998854432
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 152 RDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 152 ~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
..+..++.. .+. ..++||.||-.-
T Consensus 713 ~RWKtLLsF---~cR--NRLLLTGTPIQN 736 (1185)
T KOG0388|consen 713 SRWKTLLSF---KCR--NRLLLTGTPIQN 736 (1185)
T ss_pred hHHHHHhhh---hcc--ceeeecCCccch
Confidence 222333322 221 368999999643
No 386
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.05 E-value=0.038 Score=51.93 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=52.3
Q ss_pred cCCCCHHHHHHHHHHhhcCC-CcEEEeccccccccCCCCc--cEEEEecCCCC---------------------------
Q psy15524 691 HGSMSQSERTEVFKTFRSVK-SGVLICTDVAARGLDLPLV--DWIVQYTAPSS--------------------------- 740 (930)
Q Consensus 691 hg~~~~~~R~~v~~~F~~~~-~~vLv~T~~~~~GlDip~v--~~VI~~~~p~s--------------------------- 740 (930)
.-+....+...+++.|++.. ..||++|.-+++|+|+|+- +.||....|..
T Consensus 28 ~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~ 107 (141)
T smart00492 28 VQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVS 107 (141)
T ss_pred EeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHH
Confidence 33455556788999998764 3799999889999999874 57887776631
Q ss_pred ----hhhHHhhhcccccCCCCceEEEEe
Q psy15524 741 ----STDYVHRVGRTARVGHEGSSLLFL 764 (930)
Q Consensus 741 ----~~~y~qr~GRagR~g~~g~~~~~~ 764 (930)
.....|-+||.-|...+-.+++++
T Consensus 108 ~~~a~~~l~Qa~GR~iR~~~D~g~i~l~ 135 (141)
T smart00492 108 LPDAMRTLAQCVGRLIRGANDYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 123457888988877664444444
No 387
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.01 E-value=0.054 Score=66.87 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=45.7
Q ss_pred cCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
.|++-|++|+..++.+.+ +++.++.|+|||.+ +-.+...+.. .|.+++.++||-.-+..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHH
Confidence 589999999999998665 78999999999985 4444444432 256699999998766544
No 388
>PRK04296 thymidine kinase; Provisional
Probab=95.99 E-value=0.012 Score=58.87 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=23.7
Q ss_pred cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
=.++.+|+|+|||...+- .+.++.. .+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~-~~~~~~~--------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ-RAYNYEE--------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHH-HHHHHHH--------cCCeEEEEec
Confidence 367899999999976443 3333322 3667888876
No 389
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.96 E-value=0.14 Score=63.81 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=46.9
Q ss_pred CCCCHHHHHhHHhhhcCC-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
..+++-|.+++..+..+. =+++.++.|+|||.+ +-++.+.+.. .|..++.++||---|..+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~--------~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA--------AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEEcCcHHHHHHHH
Confidence 468999999999886543 388999999999975 4455554433 4778999999977765543
No 390
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.95 E-value=0.057 Score=50.99 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~ 37 (930)
+..+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999743
No 391
>PRK08181 transposase; Validated
Probab=95.90 E-value=0.18 Score=53.08 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=28.0
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++++++.+|+|+|||-... .+...+.. .|..++++. ..+|..++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--------~g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAA-AIGLALIE--------NGWRVLFTR-TTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHH-HHHHHHHH--------cCCceeeee-HHHHHHHH
Confidence 57889999999999996533 33333322 245555554 45666554
No 392
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.11 Score=57.55 Aligned_cols=132 Identities=15% Similarity=0.097 Sum_probs=68.9
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCc
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 506 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~ 506 (930)
++.+++.+|||+|||.+..--+....... ...|.++.+++ +.|.-+..+...+.+.. +.-+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~-----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l---gvpv--------- 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS-----DDKSLNIKIITIDNYRIGAKKQIQTYGDIM---GIPV--------- 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh-----ccCCCeEEEEeccCccHHHHHHHHHHhhcC---Ccce---------
Confidence 35688999999999987543332221110 01234444444 44555554444433322 1100
Q ss_pred hHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCcc-ceEEEEccc
Q psy15524 507 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ-FQSILLSAT 585 (930)
Q Consensus 507 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~-~q~vl~SAT 585 (930)
..+.++..+...+.. +.+.++|++|++.+.... ...+..+.+.+....+. -..+.+|||
T Consensus 237 -------------~~~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 237 -------------KAIESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred -------------EeeCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 011123334333332 356899999999987522 22355555555543333 356888999
Q ss_pred cCHH-HHHHHhhh
Q psy15524 586 LTPA-VQRLAGMT 597 (930)
Q Consensus 586 ~~~~-~~~l~~~~ 597 (930)
.... +.+....+
T Consensus 297 ~~~~~~~~~~~~~ 309 (388)
T PRK12723 297 TKTSDVKEIFHQF 309 (388)
T ss_pred CCHHHHHHHHHHh
Confidence 8643 44444433
No 393
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.85 E-value=0.022 Score=58.63 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=64.8
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEee-CCCchHHHHHHhcC-CCcEEEEChHHHHHHHhcCCCccCC
Q psy15524 55 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT-GGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFS 132 (930)
Q Consensus 55 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~ 132 (930)
.+.+.+|||+..---|.++.+.++.+-... ..+.-+. -....+++...+.. ..+|.||||+|+..++.. +.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~--~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKD--CKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCC--chHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcc
Confidence 456889999999888999999988874211 1121122 22356667777764 589999999999999976 778899
Q ss_pred CccEEEEccccc
Q psy15524 133 KVEHLVLDEADR 144 (930)
Q Consensus 133 ~l~~vViDE~h~ 144 (930)
++.+||||--|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998763
No 394
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.83 E-value=0.15 Score=52.76 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHhhc-------C-CcEEEEcCCCChHHHHHHHHHHHHHH
Q psy15524 6 VTTVQQLSIQPILD-------G-GDVLVRSQTGSGKTLAYAIPIIQKLQ 46 (930)
Q Consensus 6 l~~~Q~~ai~~~~~-------g-~~~lv~apTGsGKT~~~~l~~l~~l~ 46 (930)
.++.|+.++..+.. + ..+++.+++|+|||..... +...+.
T Consensus 77 ~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~a-ia~~l~ 124 (244)
T PRK07952 77 ECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAA-ICNELL 124 (244)
T ss_pred CCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 34567666655432 1 4699999999999986543 334443
No 395
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.81 E-value=0.04 Score=51.89 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCCC---cEEEeccc--cccccCCCC--ccEEEEecCCCC----h------------------------
Q psy15524 697 SERTEVFKTFRSVKS---GVLICTDV--AARGLDLPL--VDWIVQYTAPSS----S------------------------ 741 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~---~vLv~T~~--~~~GlDip~--v~~VI~~~~p~s----~------------------------ 741 (930)
.+...+++.|++... .||+++.- +++|+|+|+ ++.||...+|.. +
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345788889987544 69998887 999999997 467888776641 1
Q ss_pred ---hhHHhhhcccccCCCCceEEEEeC
Q psy15524 742 ---TDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 742 ---~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
....|-+||.-|...+-.+++++.
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 133588899999877655555553
No 396
>PRK06526 transposase; Provisional
Probab=95.74 E-value=0.043 Score=57.34 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=21.4
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQK 44 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~l~~l~~ 44 (930)
+..+.+++++||+|+|||.....-+...
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 4467899999999999998766544333
No 397
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.70 E-value=0.09 Score=49.60 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q psy15524 429 GGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~ 445 (930)
++.+++.+|+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999964
No 398
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.68 E-value=0.081 Score=64.37 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=44.8
Q ss_pred cCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
.|++-|+.|+..++.+ +-+++.++.|+|||... -.+...+.. .|..+++++||---+..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--------CCCeEEEEeCcHHHHHHHH
Confidence 5899999999998874 55899999999999753 333333322 2556999999977665543
No 399
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.64 E-value=0.026 Score=58.04 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=59.4
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCC-chHHHHHHHhc-CCcEEEECchhHHHhhhccCCcccc
Q psy15524 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE-KMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFS 541 (930)
Q Consensus 464 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~ 541 (930)
.+.+.+|||+.+--=|..+.+.++.+-... ..+.-+..-. ....+...+.+ ..+|.||||+|+..++.. +.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k~--~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGKD--CKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccCC--chHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcc
Confidence 457889999998666666666666553110 1111122222 44555555553 589999999999999966 778899
Q ss_pred cceEEEEecchh
Q psy15524 542 KVEHLVLDEADR 553 (930)
Q Consensus 542 ~l~~lVlDEah~ 553 (930)
++.+||||--|+
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998663
No 400
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.62 E-value=0.043 Score=60.99 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=43.3
Q ss_pred cCcHHHHHHHHHh------hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 5 QVTTVQQLSIQPI------LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 5 ~l~~~Q~~ai~~~------~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
+|++-|+.++..+ ..+.++.+.+|-|+|||.++ -.+...+.. .+..+++++||-.=|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--------ccceEEEecchHHHHHhc
Confidence 4789999999888 67889999999999999753 222233321 244588999987655544
No 401
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.62 E-value=0.72 Score=53.06 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=27.8
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
+.+++.||+|+|||-. +-.+...+... .++..++++.. .++..+.
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~------~~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEK------NPNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHh------CCCCeEEEEEH-HHHHHHH
Confidence 3489999999999975 33444444431 23556676644 4555443
No 402
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.53 E-value=0.1 Score=60.44 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=87.5
Q ss_pred HHHHHHHHHhh-----cC----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 8 TVQQLSIQPIL-----DG----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 8 ~~Q~~ai~~~~-----~g----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
|+|+-.+..++ .| +.+++.-|-|.|||......++..+... ...+..+++.+++++-|...++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 68888887766 22 2488889999999998766666555431 2346779999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHh-cCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK-HTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~-~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
.+....+...... .. . .... ..-.|.....+.....+. .....+-.+..++|+||+|.+-+.. +...
T Consensus 76 ~~i~~~~~l~~~~--~~---~-~~~~--~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~----~~~~ 143 (477)
T PF03354_consen 76 KMIEASPELRKRK--KP---K-IIKS--NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDE----LYDA 143 (477)
T ss_pred HHHHhChhhccch--hh---h-hhhh--hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHH----HHHH
Confidence 9987543221100 00 0 0000 011222222222222211 1233333467899999999886532 2222
Q ss_pred HHHHhhcCCCceEEEEEe
Q psy15524 158 LEILKKQKPQFQSILLSA 175 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSA 175 (930)
+..-....++++++..|.
T Consensus 144 l~~g~~~r~~pl~~~IST 161 (477)
T PF03354_consen 144 LESGMGARPNPLIIIIST 161 (477)
T ss_pred HHhhhccCCCceEEEEeC
Confidence 322223356667666643
No 403
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.46 E-value=0.036 Score=64.90 Aligned_cols=158 Identities=18% Similarity=0.105 Sum_probs=94.8
Q ss_pred cCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH-HHHHHh
Q psy15524 5 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE-IFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~-~~~~~~ 81 (930)
..+|+|.+.+.++... +.+.+..++-+|||.+.+..+...+.. ...-+|++.||.+++.+..+ ++..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 5789999999888754 479999999999999655554444332 12339999999999999984 788887
Q ss_pred hhcCCceeEEee---CCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc--CcHHHHHH
Q psy15524 82 KSFTWIVPSWLT---GGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ--GYERDIAE 156 (930)
Q Consensus 82 ~~~~~~~~~~~~---g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~--~~~~~~~~ 156 (930)
...+.+...+.. ...........+. +-.+.++.. .+...+.-..++++++||+|.+.++ +-+..+..
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga-------~S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~l 159 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGA-------NSPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVEL 159 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeC-------CCCcccccCCcCEEEEechhhccccCccCCCHHHH
Confidence 765543322111 1111112222223 223433332 2223444567899999999998542 23344444
Q ss_pred HHHHHhhcCCCceEEEEEeecCC
Q psy15524 157 FLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
...+......+ ..+++..||..
T Consensus 160 a~~R~~tf~~~-~K~~~~STPt~ 181 (557)
T PF05876_consen 160 AEKRTKTFGSN-RKILRISTPTI 181 (557)
T ss_pred HHHHHhhhccC-cEEEEeCCCCC
Confidence 44444433222 34555556643
No 404
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.32 E-value=0.075 Score=55.84 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=61.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCC---CeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCc
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD---GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 97 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~---~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (930)
.|++++|+|+.|||.+ +.++.+.-+.....+ -+-+++-+|...-....+..+-.... .+ . .....
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg-aP---~---~~~~~ 129 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG-AP---Y---RPRDR 129 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC-cc---c---CCCCC
Confidence 4899999999999984 344443222211111 23455566777766666665433321 11 0 00111
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCC--CceEEEE
Q psy15524 98 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP--QFQSILL 173 (930)
Q Consensus 98 ~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~--~~~~i~l 173 (930)
.... -.....++. --+++++||||+|.++...... -+.+++.++..++ ++.++++
T Consensus 130 ~~~~--------------~~~~~~llr------~~~vrmLIIDE~H~lLaGs~~~-qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 130 VAKL--------------EQQVLRLLR------RLGVRMLIIDEFHNLLAGSYRK-QREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HHHH--------------HHHHHHHHH------HcCCcEEEeechHHHhcccHHH-HHHHHHHHHHHhhccCCCeEEe
Confidence 1100 011122332 3568999999999998765443 2344444444332 3445543
No 405
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.31 E-value=0.068 Score=55.93 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=43.2
Q ss_pred CccCcHHHHHHHHHhh-------cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 3 ITQVTTVQQLSIQPIL-------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~-------~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
|......++.++..+. .+.++++.||+|+|||..+..-+...+ . .+.-++++++.+|+.++..
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~---------~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 81 FEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K---------AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred ccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H---------cCCeEEEEEHHHHHHHHHH
Confidence 4445556666555443 467999999999999987555444433 3 1235677788888887665
Q ss_pred HH
Q psy15524 76 IF 77 (930)
Q Consensus 76 ~~ 77 (930)
.+
T Consensus 151 ~~ 152 (254)
T COG1484 151 AF 152 (254)
T ss_pred HH
Confidence 44
No 406
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.29 E-value=0.29 Score=50.69 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=28.6
Q ss_pred cccceEEEEecchhhhhcCcHH-HHHHHHHHHhhcCccceEEEEccccCHHH
Q psy15524 540 FSKVEHLVLDEADRILDQGYER-DIAEFLEILKKQKPQFQSILLSATLTPAV 590 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~g~~~-~l~~i~~~l~~~~~~~q~vl~SAT~~~~~ 590 (930)
+.++++|||||++......+.. .+..|+..-.. ....+++.|---+.++
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~--~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSS--SKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHh--CCCCEEEeCCCCHHHH
Confidence 3468899999999876444443 44445544321 2456666665544433
No 407
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.27 E-value=0.34 Score=53.12 Aligned_cols=129 Identities=18% Similarity=0.253 Sum_probs=66.9
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 507 (930)
+.+.+.+|||+|||.+...-+.. +.. .|.++.++. |.|.-+.++...+....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~--------~GkkVglI~aDt~RiaAvEQLk~yae~l----------------- 295 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI----------------- 295 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCcEEEEecCCcchHHHHHHHHHhhhc-----------------
Confidence 56889999999999875444433 322 244444444 34432322222221111
Q ss_pred HHHHHHHhcCCcEE-EECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 508 KSEKARIRKGISIL-VATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 508 ~~~~~~~~~~~~Il-v~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
++.++ +.+|..+.+.+..... -.++++|++|-+=+.... ...+..+.+.+....+..-.+.+|||.
T Consensus 296 ---------gipv~v~~d~~~L~~aL~~lk~--~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~PdevlLVLsATt 362 (436)
T PRK11889 296 ---------GFEVIAVRDEAAMTRALTYFKE--EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred ---------CCcEEecCCHHHHHHHHHHHHh--ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCCeEEEEECCcc
Confidence 22222 3355556554433110 124788999988764422 344555555555444454456689876
Q ss_pred CH-HHHHHHhhh
Q psy15524 587 TP-AVQRLAGMT 597 (930)
Q Consensus 587 ~~-~~~~l~~~~ 597 (930)
.. +....+..+
T Consensus 363 k~~d~~~i~~~F 374 (436)
T PRK11889 363 KSKDMIEIITNF 374 (436)
T ss_pred ChHHHHHHHHHh
Confidence 54 445555543
No 408
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.21 Score=55.41 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=67.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc--ccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~--P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
..+++++|||+|||....--+........ ..+.++.++. +.+.-+..+... ++..++ +.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~-----~~g~~V~lit~Dt~R~aa~eQL~~---~a~~lg-vpv--------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD-----DKSLNIKIITIDNYRIGAKKQIQT---YGDIMG-IPV--------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc-----cCCCeEEEEeccCccHHHHHHHHH---HhhcCC-cce---------
Confidence 46899999999999876544332222110 1133344444 445555544333 332222 111
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCC-ceEEEEEeec
Q psy15524 99 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ-FQSILLSATL 177 (930)
Q Consensus 99 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~-~~~i~lSAT~ 177 (930)
..+-++..+...+.. +.+.++|+||++.+..... ..+..+...+....+. -.++-+|||.
T Consensus 237 ------------~~~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~--~~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 237 ------------KAIESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDF--MKLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ------------EeeCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCH--HHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 112245555554443 4678999999999875321 2345555555544333 4678899998
Q ss_pred CC
Q psy15524 178 TP 179 (930)
Q Consensus 178 ~~ 179 (930)
..
T Consensus 298 ~~ 299 (388)
T PRK12723 298 KT 299 (388)
T ss_pred CH
Confidence 64
No 409
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.09 E-value=0.074 Score=55.50 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=59.2
Q ss_pred HHHHHhhcCCCcEEEeccccccccCCCC--------ccEEEEecCCCChhhHHhhhcccccCCCC-ceEEEEeC---ccc
Q psy15524 701 EVFKTFRSVKSGVLICTDVAARGLDLPL--------VDWIVQYTAPSSSTDYVHRVGRTARVGHE-GSSLLFLI---PSE 768 (930)
Q Consensus 701 ~v~~~F~~~~~~vLv~T~~~~~GlDip~--------v~~VI~~~~p~s~~~y~qr~GRagR~g~~-g~~~~~~~---~~e 768 (930)
...+.|.+|+..|+|.+++++.|+-+.+ -++-|...+|++.+..+|..||+.|.|+. .-.+.++. +.|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5667899999999999999999998853 23667788999999999999999999984 33344443 246
Q ss_pred HHHHHHHHh
Q psy15524 769 VKLVEELQN 777 (930)
Q Consensus 769 ~~~~~~l~~ 777 (930)
..|...+.+
T Consensus 132 ~Rfas~va~ 140 (278)
T PF13871_consen 132 RRFASTVAR 140 (278)
T ss_pred HHHHHHHHH
Confidence 656555544
No 410
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.08 E-value=0.42 Score=57.93 Aligned_cols=269 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH-HHHHHHHHHHhhhcCCceeEEeeCCCc
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA-LQTLEIFTKLCKSFTWIVPSWLTGGEK 97 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~-~q~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (930)
...|+|+.+|+|+|||...-.-+...+....+.. ..+...+.+.+..-++ ......+++.
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~--l~~~~~~~l~~~~llaG~~~~Ge~e~r----------------- 266 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV--MADCTIYSLDIGSLLAGTKYRGDFEKR----------------- 266 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCch--hcCCeEEeccHHHHhcccchhhhHHHH-----------------
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc----HHHHHHHHHHHhhcCCCceEEEE
Q psy15524 98 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY----ERDIAEFLEILKKQKPQFQSILL 173 (930)
Q Consensus 98 ~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~----~~~~~~i~~~l~~~~~~~~~i~l 173 (930)
-..+.+.+.. ..-.+|+|||+|.+...+. ..++..++..+-...
T Consensus 267 ------------------l~~l~~~l~~------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-------- 314 (758)
T PRK11034 267 ------------------FKALLKQLEQ------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-------- 314 (758)
T ss_pred ------------------HHHHHHHHHh------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--------
Q ss_pred EeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccchHHHHh---hhccc
Q psy15524 174 SATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRL---AGMTL 250 (930)
Q Consensus 174 SAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~~~~~l---~~~~l 250 (930)
...++.+|-.+..... -..+.
T Consensus 315 --------------------------------------------------------~i~vIgATt~~E~~~~~~~D~AL~ 338 (758)
T PRK11034 315 --------------------------------------------------------KIRVIGSTTYQEFSNIFEKDRALA 338 (758)
T ss_pred --------------------------------------------------------CeEEEecCChHHHHHHhhccHHHH
Q ss_pred cCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEE--------EEEecccch
Q psy15524 251 QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKML--------VFMATQDMA 322 (930)
Q Consensus 251 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~i--------VF~~s~~~~ 322 (930)
+....+.+.... .+.....|..+...+..+-...-...++ -|.+.+..-
T Consensus 339 rRFq~I~v~ePs-----------------------~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lP 395 (758)
T PRK11034 339 RRFQKIDITEPS-----------------------IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_pred hhCcEEEeCCCC-----------------------HHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccCh
Q ss_pred hhhHHHHhhhhhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCHHH
Q psy15524 323 DYHTELLSTKKKIKKLKEYNIDPDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFM 402 (930)
Q Consensus 323 ~~l~~~L~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~l~~~~ 402 (930)
+..-+.|...+...+....... ...+....+...+....++| -..+..-....
T Consensus 396 dKaidlldea~a~~~~~~~~~~--------~~~v~~~~i~~v~~~~tgip-------------------~~~~~~~~~~~ 448 (758)
T PRK11034 396 DKAIDVIDEAGARARLMPVSKR--------KKTVNVADIESVVARIARIP-------------------EKSVSQSDRDT 448 (758)
T ss_pred HHHHHHHHHHHHhhccCccccc--------ccccChhhHHHHHHHHhCCC-------------------hhhhhhhHHHH
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcC---------------CcEEEEccCCCchhHHh
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDG---------------GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~---------------~d~lv~a~TGsGKTl~~ 446 (930)
+..|.+ .+..-=-.|..++..+... ..+++.+|||+|||..+
T Consensus 449 l~~l~~--~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 449 LKNLGD--RLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred HHHHHH--HhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
No 411
>PRK04296 thymidine kinase; Provisional
Probab=95.07 E-value=0.071 Score=53.26 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=23.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcc
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P 65 (930)
=.++.+|+|+|||...+--+...... +.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---------g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---------GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---------CCeEEEEec
Confidence 46889999999997655444333322 455787766
No 412
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.02 E-value=0.084 Score=62.70 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=86.7
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCC
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 86 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 86 (930)
+|+-.+.+..+.....-+.-+.||-|||++..+|+.-..+. |..+.++.-.-=||.--.+++..+...++
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~l~~~LG- 149 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGPLYEFLG- 149 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHHHHHHcC-
Confidence 44445555666666678999999999999999998644433 33367777777788888888888887766
Q ss_pred ceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHH-HHHh-----cCCCccCCCccEEEEccccccc
Q psy15524 87 IVPSWLTGGEKMKSEKARIRKGISILVATPGRLL-DHCK-----HTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 87 ~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~-----~~~~~~l~~l~~vViDE~h~~~ 146 (930)
+.+++...+........ .-.|||.++|...+- +.++ +........+.+-|+||+|.++
T Consensus 150 lsvG~~~~~m~~~ek~~--aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 150 LSVGVILAGMSPEEKRA--AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred CceeeccCCCChHHHHH--HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 66666655554443333 235899999987652 1111 1122225678999999999765
No 413
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.98 E-value=0.15 Score=50.75 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=33.4
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+++.+|+|+|||...+--+...+. .|..++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999875555554443 2666888865 46667776666655
No 414
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.90 E-value=0.42 Score=49.57 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=26.5
Q ss_pred ceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 543 VEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 543 l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.++++|||+|.+... .++..+..++..+... ...+ +++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-g~~~-li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILES-GRTR-LLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHc-CCCe-EEEeCCCCh
Confidence 478999999988643 3555666666665431 1234 445555443
No 415
>PRK08727 hypothetical protein; Validated
Probab=94.89 E-value=0.19 Score=52.09 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=26.1
Q ss_pred ccceEEEEecchhhhhcC-cHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 541 SKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g-~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+.++|||||+|.+.... ....+..++..+.. ...++++.|-..|.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~--~~~~vI~ts~~~p~ 138 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARA--AGITLLYTARQMPD 138 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHH--cCCeEEEECCCChh
Confidence 445789999999886433 33445555555533 13345554444444
No 416
>PRK12377 putative replication protein; Provisional
Probab=94.88 E-value=0.46 Score=49.38 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
..++++.+|+|+|||-. +.++...+.. .|..+++ ++..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~--------~g~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLA--------KGRSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH--------cCCCeEE-EEHHHHHHHHHH
Confidence 35799999999999975 3444444443 2444444 455567665543
No 417
>PRK06921 hypothetical protein; Provisional
Probab=94.85 E-value=0.43 Score=50.39 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+..+++.+++|+|||.. +.++...+.. ..|..++++.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThL-a~aia~~l~~-------~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL-LTAAANELMR-------KKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHHhh-------hcCceEEEEEH-HHHHHH
Confidence 56799999999999975 3444544443 11555666653 444443
No 418
>KOG0298|consensus
Probab=94.77 E-value=0.086 Score=64.24 Aligned_cols=156 Identities=21% Similarity=0.169 Sum_probs=93.8
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCc---------ccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcce
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP---------KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVP 498 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~---------~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~ 498 (930)
.|++++..-..|.|||.+-+.-.+..+-...+ ..........|||+|. ++..||++++.+..... + -
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~--l-K 448 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL--L-K 448 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc--c-e
Confidence 35778999999999999866555543211110 1112233458999997 88899999998877543 2 2
Q ss_pred EEEeCCCchHHH-HHHHhcCCcEEEECchhHHHhhhccCCc-------------c----ccc--ceEEEEecchhhhhcC
Q psy15524 499 SWLTGGEKMKSE-KARIRKGISILVATPGRLLDHCKHTETL-------------K----FSK--VEHLVLDEADRILDQG 558 (930)
Q Consensus 499 ~~~~gg~~~~~~-~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~-------------~----~~~--l~~lVlDEah~l~~~g 558 (930)
.+++-|-..... .....-.+|||++|..-|-.-+..+... . +-. +--|++|||+++-.
T Consensus 449 v~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves-- 526 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES-- 526 (1394)
T ss_pred EEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--
Confidence 333444221110 0012236999999998885544332111 0 111 22489999997643
Q ss_pred cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHH
Q psy15524 559 YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593 (930)
Q Consensus 559 ~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l 593 (930)
-.....+++.+|+ ......+|+|+-..+.++
T Consensus 527 ssS~~a~M~~rL~----~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLH----AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred hHHHHHHHHHHhh----hhceeeecCCchhhhhhh
Confidence 3556677777776 345688999965444443
No 419
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.76 E-value=0.25 Score=56.38 Aligned_cols=110 Identities=11% Similarity=0.124 Sum_probs=61.9
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 509 (930)
+.+++.|++|+|||-. +-.+...+... ..+.+++++.+ .++..++...+....
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 3489999999999954 34455544431 23566777665 566655554442200
Q ss_pred HHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 510 ~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
+.+..... .+.+.++|||||+|.+... ...+.+..++..+... +.|+++.|-..|.
T Consensus 195 ----------------~~~~~~~~-----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~--~k~iIltsd~~P~ 251 (450)
T PRK14087 195 ----------------KEIEQFKN-----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN--DKQLFFSSDKSPE 251 (450)
T ss_pred ----------------hHHHHHHH-----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHc--CCcEEEECCCCHH
Confidence 01111111 1345789999999987532 2345566666666542 3466655555544
Q ss_pred H
Q psy15524 589 A 589 (930)
Q Consensus 589 ~ 589 (930)
.
T Consensus 252 ~ 252 (450)
T PRK14087 252 L 252 (450)
T ss_pred H
Confidence 3
No 420
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.69 E-value=0.37 Score=60.13 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=44.2
Q ss_pred cCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD-GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~-g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
.|++-|.+|+..+.. ++=+++.++-|+|||.+ +-++...+.. .|.+++.++||-.=+..+
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~--------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA--------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEEcCcHHHHHHH
Confidence 589999999998864 44589999999999975 3344444432 356799999997666544
No 421
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.66 E-value=0.37 Score=55.88 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=86.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc-CCceeEEeeCCCch
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF-TWIVPSWLTGGEKM 98 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~g~~~~ 98 (930)
.+-.++..|--.|||+... +++..+.. ...|.++++.+|.+.-++..++++....+.. +...+....| +..
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~------s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALA------TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHH------hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 3568999999999999655 66665553 1247789999999999999999998886642 1111111222 111
Q ss_pred HHHHHHhcCC--CcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 99 KSEKARIRKG--ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 99 ~~~~~~l~~~--~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
.-.+..+ ..|.++|- .+.+...-..++++|||||+.+-+ ..+..++..+... ++++|+.|-|
T Consensus 326 ---~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~--n~k~I~ISS~ 389 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQT--NCKIIFVSST 389 (738)
T ss_pred ---EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhcc--CccEEEEecC
Confidence 0011112 24556531 233445556899999999998865 3445555444433 6789999988
Q ss_pred cCC
Q psy15524 177 LTP 179 (930)
Q Consensus 177 ~~~ 179 (930)
-+.
T Consensus 390 Ns~ 392 (738)
T PHA03368 390 NTG 392 (738)
T ss_pred CCC
Confidence 653
No 422
>PRK06893 DNA replication initiation factor; Validated
Probab=94.63 E-value=0.19 Score=51.93 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=29.5
Q ss_pred ccceEEEEecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 541 SKVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+.+++|+||+|.+.. ..+...+..++..+.. .+.+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCCh
Confidence 4578999999998863 2344455566655543 13456677777654
No 423
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.59 E-value=0.45 Score=55.14 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=98.7
Q ss_pred CHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
...+-..|+..|+...++.-= =.....+-.++..|=-.|||.... +++..+.. .-.|.++++.+|.+.-
T Consensus 228 a~r~~~~lk~~Fdi~~~s~~~----~~~fkqk~tVflVPRR~GKTwivv-~iI~~ll~------s~~Gi~IgytAH~~~t 296 (738)
T PHA03368 228 AERVERFLRTVFNTPLFSDAA----VRHFRQRATVFLVPRRHGKTWFLV-PLIALALA------TFRGIKIGYTAHIRKA 296 (738)
T ss_pred HHHHHHHHHHHcCCccccHHH----HHHhhccceEEEecccCCchhhHH-HHHHHHHH------hCCCCEEEEEcCcHHH
Confidence 344555566667776665422 223345667888899999999754 77765553 1358899999999999
Q ss_pred HHHHHHHHHHhhccC-CCcceEEEeCCCchHHHHHHHhcC--CcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 479 ALQTLEIFTKLCKSF-TWIVPSWLTGGEKMKSEKARIRKG--ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 479 a~Q~~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~~~--~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
+..+++++...+... +......+.| +.. .-....| ..|.++| .++.....-..++++|+|||+-+-
T Consensus 297 s~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f~nG~kstI~FaS-------arntNsiRGqtfDLLIVDEAqFIk 365 (738)
T PHA03368 297 TEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSFPDGSRSTIVFAS-------SHNTNGIRGQDFNLLFVDEANFIR 365 (738)
T ss_pred HHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEecCCCccEEEEEe-------ccCCCCccCCcccEEEEechhhCC
Confidence 999999998876632 1111111111 110 0001112 1344432 122333445689999999999886
Q ss_pred hcCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 556 DQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
+ +.+..++-.+.. .+.+++++|.|.+.
T Consensus 366 ~----~al~~ilp~l~~--~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 366 P----DAVQTIMGFLNQ--TNCKIIFVSSTNTG 392 (738)
T ss_pred H----HHHHHHHHHHhc--cCccEEEEecCCCC
Confidence 5 344555555544 27889999988654
No 424
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.58 E-value=0.19 Score=53.38 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=48.4
Q ss_pred CCCccCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 70 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~--~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 70 (930)
+|+...+-.|.-|+..++... =+.+.++-|||||+.++.+.+......+. -.+.+|--|+..+-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~------y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR------YRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh------hceEEEecCCcCcc
Confidence 478777888999999888653 27788999999999999888887766332 23477777876654
No 425
>KOG0989|consensus
Probab=94.55 E-value=0.22 Score=51.72 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=29.5
Q ss_pred cCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 130 KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 130 ~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
....++.+|+||||.|.... ...+.+.+.......++++....++
T Consensus 126 ~~~~fKiiIlDEcdsmtsda----q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA----QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHH----HHHHHHHHhccccceEEEEEcCChh
Confidence 34667999999999997433 2333344444445667888777664
No 426
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.53 E-value=0.44 Score=47.40 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=31.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+++.+|+|+|||...+--+...+. .|..++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999865544444432 2445777764 34566666666555
No 427
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.50 E-value=0.063 Score=60.14 Aligned_cols=146 Identities=17% Similarity=0.181 Sum_probs=77.2
Q ss_pred EEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh-hcCCceeEEeeCCCchHH---
Q psy15524 25 VRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKS--- 100 (930)
Q Consensus 25 v~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~g~~~~~~--- 100 (930)
..+.||||||++..--++...... -..-|+.|.....+.-...-+..-.. .+- ..-...+++.....
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg--------yr~flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG--------YRNFLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc--------hhhEEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeeeeee
Confidence 467899999998777777665431 12256666554443322222211100 000 00111222222111
Q ss_pred -HHHHhcCCCcEEEEChHHHHHHHhcCC--Ccc---CCCccEE-EEcccccccccC---------cHHHHHHHHHHHhhc
Q psy15524 101 -EKARIRKGISILVATPGRLLDHCKHTE--TLK---FSKVEHL-VLDEADRILDQG---------YERDIAEFLEILKKQ 164 (930)
Q Consensus 101 -~~~~l~~~~~Ilv~Tp~~l~~~l~~~~--~~~---l~~l~~v-ViDE~h~~~~~~---------~~~~~~~i~~~l~~~ 164 (930)
.......+..|.++|.+.|...+.+.. .+. +.+.++| +=||+|++-..- -...+...+......
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~ 152 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ 152 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc
Confidence 011134457899999999987765532 233 4455554 669999986422 112233334333445
Q ss_pred CCCceEEEEEeecCC
Q psy15524 165 KPQFQSILLSATLTP 179 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~ 179 (930)
+++--++.+|||.+.
T Consensus 153 nkd~~~lef~at~~k 167 (812)
T COG3421 153 NKDNLLLEFSATIPK 167 (812)
T ss_pred CCCceeehhhhcCCc
Confidence 566678889999974
No 428
>PRK08116 hypothetical protein; Validated
Probab=94.47 E-value=0.54 Score=49.72 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=27.7
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
..+++.+++|+|||.. +.++.+.+.. .+..++++ +..+|..++.
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~--------~~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIE--------KGVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHH--------cCCeEEEE-EHHHHHHHHH
Confidence 3499999999999986 3456666554 14445554 4455554443
No 429
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.44 E-value=0.49 Score=61.18 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=46.4
Q ss_pred CCCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
.+++-|.+|+..++.+.| +++.+..|+|||.. +-.++..+... ....+..++.++||-.-+.++.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~l----~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNML----PESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHHH----hhccCceEEEEechHHHHHHHH
Confidence 689999999999997644 89999999999986 22333332211 0124567889999977776553
No 430
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.42 E-value=0.074 Score=62.34 Aligned_cols=156 Identities=19% Similarity=0.120 Sum_probs=88.7
Q ss_pred CCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH-HHHHHhh
Q psy15524 414 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL-EIFTKLC 490 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~-~~~~~~~ 490 (930)
..+|+|.+.+..+-.. +.+++..++-+|||.+.+. ++-.... .+...++++.||.++|.+.. +.+..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~-------~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSID-------QDPGPMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEE-------eCCCCEEEEEEcHHHHHHHHHHHHHHHH
Confidence 5678888888777654 4699999999999996433 3322222 12345899999999999887 5666666
Q ss_pred ccCCCcceEEEeC----CCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc--CcHHHHH
Q psy15524 491 KSFTWIVPSWLTG----GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ--GYERDIA 564 (930)
Q Consensus 491 ~~~~~~~~~~~~g----g~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~--g~~~~l~ 564 (930)
...+.+.. .+.. ............ |..+.++.-+ +...+.-..++++++||+|.+.+. +=+..+.
T Consensus 88 ~~sp~l~~-~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~-------S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~ 158 (557)
T PF05876_consen 88 RASPVLRR-KLSPSKSRDSGNTILYKRFP-GGFLYLVGAN-------SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVE 158 (557)
T ss_pred HhCHHHHH-HhCchhhcccCCchhheecC-CCEEEEEeCC-------CCcccccCCcCEEEEechhhccccCccCCCHHH
Confidence 55443321 1222 111111112222 4455554421 123344567899999999998532 2234444
Q ss_pred HHHHHHhhcCccceEEEEccccC
Q psy15524 565 EFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 565 ~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
....+......... +++..|++
T Consensus 159 la~~R~~tf~~~~K-~~~~STPt 180 (557)
T PF05876_consen 159 LAEKRTKTFGSNRK-ILRISTPT 180 (557)
T ss_pred HHHHHHhhhccCcE-EEEeCCCC
Confidence 44444444322333 44444544
No 431
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.41 E-value=0.71 Score=44.40 Aligned_cols=38 Identities=29% Similarity=0.288 Sum_probs=23.7
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
+++.+++|+|||.....-+.. +.. .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~-~~~--------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN-IAT--------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH-HHh--------cCCEEEEEECCcch
Confidence 578999999999864333332 221 35567777665443
No 432
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.38 E-value=0.31 Score=55.22 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=26.9
Q ss_pred cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
.+++.||+|+|||.. +..+...+... ..+..++++.. .++..
T Consensus 138 ~l~l~G~~G~GKThL-~~ai~~~l~~~------~~~~~v~yi~~-~~~~~ 179 (405)
T TIGR00362 138 PLFIYGGVGLGKTHL-LHAIGNEILEN------NPNAKVVYVSS-EKFTN 179 (405)
T ss_pred eEEEECCCCCcHHHH-HHHHHHHHHHh------CCCCcEEEEEH-HHHHH
Confidence 488999999999976 34555555431 23566777753 34443
No 433
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.36 E-value=0.059 Score=50.43 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+..+++.+|+|+|||.... .+...+.. .+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~-~l~~~~~~--------~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR-ALARELGP--------PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHH-HHHhccCC--------CCCCEEEECCEEccc
Confidence 4568999999999998632 22322211 123467777765443
No 434
>PRK12377 putative replication protein; Provisional
Probab=94.34 E-value=0.49 Score=49.20 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=33.9
Q ss_pred cHHHHHHHHHhh-------c-CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 7 TTVQQLSIQPIL-------D-GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 7 ~~~Q~~ai~~~~-------~-g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
.+-|+.++..+. . ..++++.+|+|+|||..... +...+.. .+. .++.++..+|..++..
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~A-Ia~~l~~--------~g~-~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAA-IGNRLLA--------KGR-SVIVVTVPDVMSRLHE 146 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH-HHHHHHH--------cCC-CeEEEEHHHHHHHHHH
Confidence 456665554322 2 25799999999999986443 3344433 122 3344455666665543
No 435
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.33 E-value=0.25 Score=52.30 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=16.8
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~ 41 (930)
.++++.+|+|+|||..+-.-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 468999999999998754443
No 436
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.38 Score=52.96 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQ 452 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~ 452 (930)
.|..+++.+|||+|||.+...-+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999975444433
No 437
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.31 E-value=0.89 Score=43.72 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 70 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 70 (930)
+++.+|+|+|||.....-+..... .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---------cCCEEEEEECCcchH
Confidence 689999999999865444333221 244577777654443
No 438
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.30 E-value=0.14 Score=59.42 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=85.1
Q ss_pred HHHHHhHHhhhc-----C----CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 417 TVQQLSIQPILD-----G----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 417 ~iQ~~~i~~il~-----~----~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
|+|+-.+..++. | +.+++.-|=|.|||.....-++-.+.- ....+..+++.+++++-|..+++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~-----~g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL-----DGEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc-----CCccCceEEEEeCCHHHHHHHHHHHH
Confidence 567776666662 2 358888999999998655444433332 12357789999999999999999999
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhh-ccCCcccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK-HTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~-~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
.+....+...... + ...... ....|.....+.....+. ......-.+..++|+||+|.+-+. ..+..+
T Consensus 76 ~~i~~~~~l~~~~---~----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~---~~~~~l 144 (477)
T PF03354_consen 76 KMIEASPELRKRK---K----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD---ELYDAL 144 (477)
T ss_pred HHHHhChhhccch---h----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH---HHHHHH
Confidence 8876533221100 0 000000 112333332233222222 222333346789999999977653 344444
Q ss_pred HHHHhhcCccceEEEEc
Q psy15524 567 LEILKKQKPQFQSILLS 583 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~S 583 (930)
...+.. .++.+++.+|
T Consensus 145 ~~g~~~-r~~pl~~~IS 160 (477)
T PF03354_consen 145 ESGMGA-RPNPLIIIIS 160 (477)
T ss_pred Hhhhcc-CCCceEEEEe
Confidence 444443 3466666554
No 439
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.25 E-value=0.56 Score=47.99 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=60.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 101 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (930)
-++++||+|+|||.. +-++.+.+... .++.+++++.. .+.+......++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~------~~~~~v~y~~~-~~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ------HPGKRVVYLSA-EEFIREFADALRD---------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH------CTTS-EEEEEH-HHHHHHHHHHHHT----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc------cccccceeecH-HHHHHHHHHHHHc----------------------
Confidence 389999999999994 44555555432 12344555543 3444443333221
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 102 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 102 ~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
...+.+.+. +...++++||.+|.+.+.. ....+-.++..+...+ .++|+.|..+|.
T Consensus 86 ------------~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~--k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 ------------GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG--KQLILTSDRPPS 142 (219)
T ss_dssp ------------TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT--SEEEEEESS-TT
T ss_pred ------------ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC--CeEEEEeCCCCc
Confidence 023333333 3468999999999987542 4455666676666543 356666555554
No 440
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.24 E-value=0.34 Score=55.72 Aligned_cols=105 Identities=15% Similarity=0.239 Sum_probs=57.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 101 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (930)
.++++||+|+|||..... +.+.+... .++..++++ +..++..+....+...
T Consensus 150 ~l~l~G~~G~GKThL~~a-i~~~~~~~------~~~~~v~yi-~~~~~~~~~~~~~~~~--------------------- 200 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHA-IGNYILEK------NPNAKVVYV-TSEKFTNDFVNALRNN--------------------- 200 (450)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHHh------CCCCeEEEE-EHHHHHHHHHHHHHcC---------------------
Confidence 589999999999986443 33444331 123445555 4455555443332110
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 102 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 102 ~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+.+.+... +...++|||||+|.+.... ....+-.++..+.... .+ +.++++.++
T Consensus 201 -------------~~~~~~~~--------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~--~~-iiits~~~p 255 (450)
T PRK00149 201 -------------TMEEFKEK--------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG--KQ-IVLTSDRPP 255 (450)
T ss_pred -------------cHHHHHHH--------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC--Cc-EEEECCCCH
Confidence 11222222 2357799999999886432 2344555555554433 23 455555443
No 441
>PRK05642 DNA replication initiation factor; Validated
Probab=94.23 E-value=0.3 Score=50.56 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=28.3
Q ss_pred ccceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 541 SKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+.+++|+|++|.+... .+...+..+++.+... +. .++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~--g~-~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS--GR-RLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc--CC-EEEEeCCCCH
Confidence 34678999999987533 3455667777666531 33 4566666544
No 442
>PRK08116 hypothetical protein; Validated
Probab=94.21 E-value=0.57 Score=49.55 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=18.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHh
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQE 47 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~ 47 (930)
.++++|++|+|||..+. ++.+.+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 49999999999998654 45555543
No 443
>PRK14974 cell division protein FtsY; Provisional
Probab=94.20 E-value=0.54 Score=51.18 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=34.7
Q ss_pred ccceEEEEecchhhh-hcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhh
Q psy15524 541 SKVEHLVLDEADRIL-DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT 597 (930)
Q Consensus 541 ~~l~~lVlDEah~l~-~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~ 597 (930)
...++|++|.|.++. +..+...+..+.+.+ .+...++.++||..++..+.+..+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~---~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVT---KPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhh---CCceEEEeeccccchhHHHHHHHH
Confidence 356799999999875 233444555554443 346677888998876655544443
No 444
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.19 E-value=0.063 Score=55.52 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=34.9
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhh
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM 457 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~ 457 (930)
.+|+++ ++|+.+.+.+....| =++|.+|||||||.+ +.+++..+.+.
T Consensus 106 ~~~e~L-glP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 106 PTLEEL-GLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CCHHHc-CCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 468888 888877764432111 289999999999987 77888888764
No 445
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.15 E-value=1.1 Score=50.78 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCc
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 506 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~ 506 (930)
++.+++.+|||+|||.+..--+...... ..+.++.++. |.|.-+.++...+..... .+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-------~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-vp------------ 280 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-------YGKKKVALITLDTYRIGAVEQLKTYAKIMG-IP------------ 280 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEECCccHHHHHHHHHHHHHHhC-Cc------------
Confidence 5668899999999998744333322211 1234455444 334333333333222211 00
Q ss_pred hHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh-hcCccceEEEEccc
Q psy15524 507 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK-KQKPQFQSILLSAT 585 (930)
Q Consensus 507 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~-~~~~~~q~vl~SAT 585 (930)
-..+.+|..+...+.. +.+.++|+||.+-+.... ...+..+...+. ...+....+++|||
T Consensus 281 ------------~~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d--~~~~~~L~~ll~~~~~~~~~~LVl~a~ 341 (424)
T PRK05703 281 ------------VEVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRD--KRLIEELKALIEFSGEPIDVYLVLSAT 341 (424)
T ss_pred ------------eEccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCC--HHHHHHHHHHHhccCCCCeEEEEEECC
Confidence 0112344444444432 335789999988653211 122233333333 11233457888998
Q ss_pred cCH-HHHHHHhh
Q psy15524 586 LTP-AVQRLAGM 596 (930)
Q Consensus 586 ~~~-~~~~l~~~ 596 (930)
... .+.+....
T Consensus 342 ~~~~~l~~~~~~ 353 (424)
T PRK05703 342 TKYEDLKDIYKH 353 (424)
T ss_pred CCHHHHHHHHHH
Confidence 875 34444433
No 446
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.15 E-value=0.31 Score=57.67 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=25.3
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+.+++||||+|+|.... .+.+++.|....+...+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A----~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA----FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH----HHHHHHHHHhcCCCeEEEEEE
Confidence 457899999999987544 345566665544455555544
No 447
>PRK05642 DNA replication initiation factor; Validated
Probab=94.13 E-value=0.32 Score=50.34 Aligned_cols=46 Identities=24% Similarity=0.454 Sum_probs=29.3
Q ss_pred CCccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 132 SKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
.+.+++|||++|.+... .....+-.+++.+...+ ..+.++++.++.
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g---~~ilits~~~p~ 142 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSG---RRLLLAASKSPR 142 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcC---CEEEEeCCCCHH
Confidence 35679999999987543 33455666666665433 456777766543
No 448
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.08 E-value=0.31 Score=50.23 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
+..+++.+|+|+|||...
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999864
No 449
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.07 E-value=0.36 Score=49.44 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=63.3
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
+++.+|+|+|||=. +-++...+.+. .++.+++++... +........+.. +
T Consensus 37 l~l~G~~G~GKTHL-L~Ai~~~~~~~------~~~~~v~y~~~~-~f~~~~~~~~~~---------------~------- 86 (219)
T PF00308_consen 37 LFLYGPSGLGKTHL-LQAIANEAQKQ------HPGKRVVYLSAE-EFIREFADALRD---------------G------- 86 (219)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHH------CTTS-EEEEEHH-HHHHHHHHHHHT---------------T-------
T ss_pred eEEECCCCCCHHHH-HHHHHHHHHhc------cccccceeecHH-HHHHHHHHHHHc---------------c-------
Confidence 89999999999974 55555555542 235667777653 454443333322 0
Q ss_pred HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-cHHHHHHHHHHHhhcCccceEEEEccccCHH
Q psy15524 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTPA 589 (930)
Q Consensus 512 ~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g-~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~ 589 (930)
....+.+ .+...++++||.+|.+.... +...+..+++.+... +.++++.|...|..
T Consensus 87 ------------~~~~~~~--------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 87 ------------EIEEFKD--------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSE 143 (219)
T ss_dssp ------------SHHHHHH--------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTT
T ss_pred ------------cchhhhh--------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCcc
Confidence 0011111 13468899999999986542 456666677766553 45777777676654
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.02 E-value=0.14 Score=47.79 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 70 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 70 (930)
+..+++.+|+|+|||.....-+ ..+.. .+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~--------~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGP--------PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCC--------CCCCEEEECCEEccc
Confidence 5679999999999998644333 22211 112367777665543
No 451
>PRK08727 hypothetical protein; Validated
Probab=94.02 E-value=0.39 Score=49.74 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l 39 (930)
.++++||+|+|||.....
T Consensus 43 ~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALA 60 (233)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 499999999999986543
No 452
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.02 E-value=1.4 Score=47.90 Aligned_cols=45 Identities=24% Similarity=0.275 Sum_probs=28.8
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
+.++++.||||+|||.. +.++...+.. .|..|++++ ..+|..++.
T Consensus 183 ~~~Lll~G~~GtGKThL-a~aIa~~l~~--------~g~~V~y~t-~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFL-SNCIAKELLD--------RGKSVIYRT-ADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHH-HHHHHHHHHH--------CCCeEEEEE-HHHHHHHHH
Confidence 47799999999999975 3344444443 255566554 456655443
No 453
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.02 E-value=0.74 Score=53.71 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=83.4
Q ss_pred CcHHHHHHHHHhh---cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 6 VTTVQQLSIQPIL---DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 6 l~~~Q~~ai~~~~---~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
|+|.=.+=|.+++ +.+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|...-+.+++++++....
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3444444444443 45568889999999999866555544321 246699999999999999999888876
Q ss_pred hcCC------c-eeEEeeCCCc-hHHHH-HHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHH
Q psy15524 83 SFTW------I-VPSWLTGGEK-MKSEK-ARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYER 152 (930)
Q Consensus 83 ~~~~------~-~~~~~~g~~~-~~~~~-~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~ 152 (930)
..+. . .+....|+.. ..-.. .... ++..|.+++ ...+...-...+++|||||..+-. +
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~A--------rs~~s~RG~~~DLLIVDEAAfI~~----~ 309 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLA--------SSPNAARGQNPDLVIVDEAAFVNP----G 309 (752)
T ss_pred HhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEec--------ccCCCcCCCCCCEEEEECcccCCH----H
Confidence 4321 0 0111111110 00000 0000 002233322 122333334679999999998865 3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 153 DIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 153 ~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.+..++-.+.. .+.+++.+|-+-
T Consensus 310 ~l~aIlP~l~~--~~~k~IiISS~~ 332 (752)
T PHA03333 310 ALLSVLPLMAV--KGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHHcc--CCCceEEEeCCC
Confidence 44445544443 234666666665
No 454
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.98 E-value=0.23 Score=59.66 Aligned_cols=70 Identities=17% Similarity=0.061 Sum_probs=53.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.|++-|++|+-.- ..+++|.|..|||||.+...-+...+.... ..+.++|+++.|+..|..+.+++....
T Consensus 196 ~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 196 PLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 5899999988643 346899999999999987666655554311 124569999999999999999887653
No 455
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.97 E-value=0.32 Score=51.43 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.2
Q ss_pred CcEEEEccCCCchhHHhh
Q psy15524 430 GDVLVRSQTGSGKTLAYA 447 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~ 447 (930)
.++++.+|+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998643
No 456
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.93 E-value=0.97 Score=45.28 Aligned_cols=122 Identities=23% Similarity=0.339 Sum_probs=59.2
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 509 (930)
+++.+|||+|||.+..--+ .++.. . +.++.+++ ..|.=|.++.+.+.+.++ +.........
T Consensus 4 i~lvGptGvGKTTt~aKLA-a~~~~-------~-~~~v~lis~D~~R~ga~eQL~~~a~~l~-----vp~~~~~~~~--- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLA-ARLKL-------K-GKKVALISADTYRIGAVEQLKTYAEILG-----VPFYVARTES--- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH-HHHHH-------T-T--EEEEEESTSSTHHHHHHHHHHHHHT-----EEEEESSTTS---
T ss_pred EEEECCCCCchHhHHHHHH-HHHhh-------c-cccceeecCCCCCccHHHHHHHHHHHhc-----cccchhhcch---
Confidence 6789999999999743333 33322 1 33444444 456666655555555443 1111111111
Q ss_pred HHHHHhcCCcEEEECchhH-HHhhhccCCcccccceEEEEecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 510 EKARIRKGISILVATPGRL-LDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 510 ~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~~~~~~~l~~lVlDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
.|..+ .+.+.. ...++.+++++|-+-+.... .....+..+++.+ .+..-.+.+|||..
T Consensus 67 --------------~~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 67 --------------DPAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL---NPDEVHLVLSATMG 126 (196)
T ss_dssp --------------CHHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH---SSSEEEEEEEGGGG
T ss_pred --------------hhHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc---CCccceEEEecccC
Confidence 01111 112211 12345778888887654321 1223444444444 34556688899987
Q ss_pred HHH
Q psy15524 588 PAV 590 (930)
Q Consensus 588 ~~~ 590 (930)
...
T Consensus 127 ~~~ 129 (196)
T PF00448_consen 127 QED 129 (196)
T ss_dssp GHH
T ss_pred hHH
Confidence 653
No 457
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.81 E-value=0.75 Score=55.15 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=25.6
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
..+.+|||||+|.+... ....+..++++.......+-+||.|.+
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 45678999999999764 234455566554332223334444443
No 458
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.80 E-value=0.16 Score=61.39 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+++-|.+|+.. ....++|.|..|||||.+..--+...+.... -+..++|+|+.|+..|.++.+.+.+++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478899999876 3467899999999999985555554443211 1345799999999999999998887654
No 459
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.71 E-value=0.39 Score=57.44 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=19.7
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHH
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEIL 570 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l 570 (930)
....+|||||+|.+...+ ...+..+++..
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~ 896 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWP 896 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHh
Confidence 346789999999997642 44555555543
No 460
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.71 E-value=0.16 Score=61.30 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=54.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
.|++-|++|+... +..++|.|+.|||||.+...-+...+.... .+..++|+|+.|+.-|.++.+++....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4899999998753 457889999999999997766666554311 123459999999999999999988764
No 461
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.89 Score=49.93 Aligned_cols=120 Identities=19% Similarity=0.285 Sum_probs=64.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc--ccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~--P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
+.+++++|||+|||.....-+.. +.. .+.++.++. |-+.-+.++... +....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~--------~GkkVglI~aDt~RiaAvEQLk~---yae~l-------------- 295 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG--------KKKTVGFITTDHSRIGTVQQLQD---YVKTI-------------- 295 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH--------cCCcEEEEecCCcchHHHHHHHH---Hhhhc--------------
Confidence 46899999999999875554433 322 123344444 334333333222 22111
Q ss_pred HHHHHHhcCCCcEE-EEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 99 KSEKARIRKGISIL-VATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 99 ~~~~~~l~~~~~Il-v~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
++++. ..+|..+.+.+.... ...+.++|+||-+=+.... ...+..+...+....++-.++-+|||.
T Consensus 296 ---------gipv~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~PdevlLVLsATt 362 (436)
T PRK11889 296 ---------GFEVIAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred ---------CCcEEecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCCeEEEEECCcc
Confidence 12232 346777666554211 0125789999988654422 234555555555444554566688876
Q ss_pred CC
Q psy15524 178 TP 179 (930)
Q Consensus 178 ~~ 179 (930)
..
T Consensus 363 k~ 364 (436)
T PRK11889 363 KS 364 (436)
T ss_pred Ch
Confidence 53
No 462
>CHL00181 cbbX CbbX; Provisional
Probab=93.56 E-value=0.6 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~ 41 (930)
|.++++.+|+|+|||.++-.-+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999765543
No 463
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.55 E-value=0.32 Score=63.00 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=77.9
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
++|+-|.++|.. .+++++|.|..|||||.+..--++..+... .+-.++++|+=|+..|.++.+++.+.+...
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 368899999974 688999999999999998666666655431 122458999999999999888887765432
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccc-cceEEEEecchh
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS-KVEHLVLDEADR 553 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~-~l~~lVlDEah~ 553 (930)
.. .........+.+..-...-|+|-..+...+-+.....+. +-.+=|.||...
T Consensus 73 ~~-------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 11 011111112222223456789988775544332211111 113456888875
No 464
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.52 E-value=0.57 Score=61.39 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=47.2
Q ss_pred CCCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.+++.|..|+..++.+.| +++.+..|+|||.. +-.++..+... ....+..++.++||---|.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l----~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL----PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh----hcccCceEEEECCcHHHHHHH
Confidence 689999999999998755 88999999999975 44444444321 012356788899998777654
No 465
>KOG1001|consensus
Probab=93.50 E-value=0.32 Score=57.74 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=69.5
Q ss_pred cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 510 (930)
-.|+.-.-|-|||...+.-++..=...........+...||++|+ ++..|+...+.+.... ....+.+..| +..+
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~-~~l~v~v~~g---r~kd 228 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEE-DKLSIYVYHG---RTKD 228 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCc-cceEEEEecc---cccc
Confidence 467888889999997544443221110000011246678999997 7888898888554433 3344444444 1112
Q ss_pred HHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC
Q psy15524 511 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG 558 (930)
Q Consensus 511 ~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g 558 (930)
.....+.+|+++||+.+-. ..+..-..-.+|+||||.+-...
T Consensus 229 -~~el~~~dVVltTy~il~~-----~~l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 229 -KSELNSYDVVLTTYDILKN-----SPLVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred -cchhcCCceEEeeHHHhhc-----ccccceeEEEEEeccccccCCcc
Confidence 1223468899999987753 11111234569999999987654
No 466
>PRK06893 DNA replication initiation factor; Validated
Probab=93.47 E-value=0.3 Score=50.45 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=30.7
Q ss_pred CCccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEeecCCCc
Q psy15524 132 SKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~~ 181 (930)
.+.+++||||+|.+... .....+..++..+... ..+++.+|++.++..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHH
Confidence 46789999999988643 3344555566655442 235677888776543
No 467
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.69 Score=54.09 Aligned_cols=41 Identities=15% Similarity=0.328 Sum_probs=28.3
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT 585 (930)
.+.+++||||+|+|.... .+.+++.|.....+..+|+.|--
T Consensus 123 gr~KViIIDEah~Ls~~A----aNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHA----FNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHH----HHHHHHhhccCCCCceEEEEeCC
Confidence 467899999999987543 45566777665556666665543
No 468
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.46 E-value=0.57 Score=53.15 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=25.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 72 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q 72 (930)
.++++||+|+|||... ..+.+.+... .++..++++. ...+..+
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~------~~~~~v~yi~-~~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN------NPNAKVVYVS-SEKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh------CCCCcEEEEE-HHHHHHH
Confidence 4899999999999864 3444444431 1234466664 3344443
No 469
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.45 E-value=0.43 Score=49.46 Aligned_cols=44 Identities=14% Similarity=0.296 Sum_probs=25.9
Q ss_pred ccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 134 VEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 134 l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
.++|+|||+|.+... .....+..++..+...+ ..+ +.+|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g-~~~-li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESG-RTR-LLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcC-CCe-EEEeCCCCh
Confidence 478999999988643 34445556665554422 224 445555443
No 470
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.44 E-value=0.8 Score=52.42 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=27.2
Q ss_pred cccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 540 FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
..+.+++||||+|.+... ....+++.+...++...+++.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~----A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS----AFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHH----HHHHHHHHHhCCCCCeEEEEEe
Confidence 357889999999988653 3456677777655455555543
No 471
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.42 E-value=1.9 Score=50.47 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=30.4
Q ss_pred cccceEEEEecchhhhhcC-cHHHHHHHHHHHhhcCccceEEEEccccCHHH
Q psy15524 540 FSKVEHLVLDEADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTPAV 590 (930)
Q Consensus 540 ~~~l~~lVlDEah~l~~~g-~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~ 590 (930)
+.++++|||||+|.+.... ....+..+++.+... +.++|+.|-..+..+
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecCCChHhh
Confidence 3457899999999886433 345566666666542 456666555544433
No 472
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.41 E-value=0.67 Score=52.98 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=58.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 101 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (930)
.++++|++|+|||... -.+.+.+... .++.+++++.+ .++..++...+....
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------
Confidence 4899999999999653 4444544431 22445666554 566665554442200
Q ss_pred HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 102 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 102 ~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
...+.+... +.++++|||||+|.+... .....+..++..+.... -|+|+.|-.
T Consensus 195 ------------~~~~~~~~~--------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~--k~iIltsd~ 248 (450)
T PRK14087 195 ------------KEIEQFKNE--------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEND--KQLFFSSDK 248 (450)
T ss_pred ------------hHHHHHHHH--------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC--CcEEEECCC
Confidence 011222221 346789999999988542 23455666666665443 244444433
No 473
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.41 E-value=0.55 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=18.7
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQ 455 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~ 455 (930)
.++++.||+|+|||.+ +--++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5699999999999986 444444443
No 474
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.6 Score=51.61 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=16.9
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~ 41 (930)
.|+++.+|||+|||.+.-..+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHH
Confidence 479999999999998744443
No 475
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.49 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=19.8
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHh
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQE 456 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~ 456 (930)
.++++-++||+|||.+ .--+++.+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 4699999999999987 4455555554
No 476
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.20 E-value=0.67 Score=48.86 Aligned_cols=119 Identities=18% Similarity=0.299 Sum_probs=60.9
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCC---CeeEEEEccCHHHHHHHHHHHHHhh-ccCCCcceEEEeCCC
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD---GIYAVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGE 505 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~---~~~~lil~PtreLa~Q~~~~~~~~~-~~~~~~~~~~~~gg~ 505 (930)
.++++.++||-|||.. +++..+..+.....+ -+-+++-+|...=....+..+-..+ ..+.. ..
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--------~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--------RD 128 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--------CC
Confidence 4799999999999983 455554433222112 2455666677665555555443332 21110 11
Q ss_pred chHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCc--cceEEEE
Q psy15524 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP--QFQSILL 582 (930)
Q Consensus 506 ~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~--~~q~vl~ 582 (930)
. ...... ....+++. -.++++||||.|.++.....+ -..+++.++.... +..+|++
T Consensus 129 ~-~~~~~~-------------~~~~llr~------~~vrmLIIDE~H~lLaGs~~~-qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 129 R-VAKLEQ-------------QVLRLLRR------LGVRMLIIDEFHNLLAGSYRK-QREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred C-HHHHHH-------------HHHHHHHH------cCCcEEEeechHHHhcccHHH-HHHHHHHHHHHhhccCCCeEEe
Confidence 1 111110 11223332 457899999999998655332 3334444443333 3444544
No 477
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.05 E-value=0.21 Score=61.07 Aligned_cols=71 Identities=20% Similarity=0.135 Sum_probs=54.9
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
..|++-|++|+... +..++|.|..|||||.+...=+...+.... .+..++|+|+.|+.-|.++.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-----v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-----ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 56999999998653 458999999999999986665555553211 123459999999999999999998875
No 478
>PLN03025 replication factor C subunit; Provisional
Probab=92.98 E-value=1.1 Score=48.82 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.4
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
.++++.||+|+|||..+
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999763
No 479
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.96 E-value=1.1 Score=48.33 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=32.0
Q ss_pred CccCcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHHHh
Q psy15524 3 ITQVTTVQQLSIQPIL----DGG---DVLVRSQTGSGKTLAYAIPIIQKLQE 47 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~----~g~---~~lv~apTGsGKT~~~~l~~l~~l~~ 47 (930)
+..++|||..++..+. .|+ -.|+.+|.|.||+..+.. +.+.+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 3568999999998865 343 489999999999986544 3344443
No 480
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.93 E-value=0.78 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCChHHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIP 40 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~ 40 (930)
+.++++.||+|+|||.....-
T Consensus 38 ~~~lll~G~~G~GKT~la~~~ 58 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAA 58 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457999999999999865443
No 481
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.90 E-value=2.3 Score=48.89 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=102.7
Q ss_pred CHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
...+.+.++..|+...++.- ++..+ +.+--+..-|---|||. |+.|++..++. .-.|.++.|++.-|-.
T Consensus 176 a~r~~~~lk~~Fdi~~~s~~---~l~~F-KQkaTVFLVPRRHGKTW-f~VpiIsllL~------s~~gI~IGYvAHqKhv 244 (668)
T PHA03372 176 ANRVLEYLLHVFDIEFLSES---SLNIF-KQKATVFLVPRRHGKTW-FIIPIISFLLK------NIIGISIGYVAHQKHV 244 (668)
T ss_pred HHHHHHHHHHHcCCcccCHH---HHHHh-hccceEEEecccCCcee-hHHHHHHHHHH------hhcCceEEEEeeHHHH
Confidence 34455566667787777643 33333 34444555599999998 58999988876 2458899999999998
Q ss_pred HHHHHHHHHHhhc-cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH----HHhhhccCCcccccceEEEEecchh
Q psy15524 479 ALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL----LDHCKHTETLKFSKVEHLVLDEADR 553 (930)
Q Consensus 479 a~Q~~~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl----~~~l~~~~~~~~~~l~~lVlDEah~ 553 (930)
++-+++++...+. +++..... -.++..|.+.-||.= .....++..+.-++++++++||||-
T Consensus 245 s~~Vf~EI~~~lrrwF~~~~vi--------------~~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~F 310 (668)
T PHA03372 245 SQFVLKEVEFRCRRMFPRKHTI--------------ENKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHF 310 (668)
T ss_pred HHHHHHHHHHHHhhhcCcccee--------------eecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhc
Confidence 8887777765443 22211110 013446777777642 2122344456677899999999997
Q ss_pred hhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 554 ILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 554 l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
+- .+.+..|+-.+.. .+..++..|.|-+
T Consensus 311 I~----~~a~~tilgfm~q--~~~KiIfISS~Ns 338 (668)
T PHA03372 311 IK----KDAFNTILGFLAQ--NTTKIIFISSTNT 338 (668)
T ss_pred cC----HHHHHHhhhhhcc--cCceEEEEeCCCC
Confidence 74 3445666666654 4778899998854
No 482
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.87 E-value=0.87 Score=58.99 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=45.5
Q ss_pred cCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHH--HHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAY--AIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~--~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
.|++-|++|+..++.. +-++|.+..|+|||.+. ++.++..+.. ..+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-------ccCceEEEEechHHHHHHHH
Confidence 5899999999999965 56999999999999873 2233332221 23456888999987666553
No 483
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.85 E-value=0.24 Score=60.52 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=54.7
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
..|++-|++|+... ...++|.|+.|||||.+...=+...+.... .+..++|+|+-|+.-|.++.+++.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 46899999998743 358999999999999986665555553211 123459999999999999999998875
No 484
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=92.81 E-value=0.4 Score=60.58 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=96.6
Q ss_pred ccCcHHHHHHHHHhh-----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPIL-----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~-----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.++.++|.+.++.+. .+.+.+++..-|-|||+..+.-+...... .. ...+.+++++|+- ++.++.+.+.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~-~~----~~~~~~liv~p~s-~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLES-IK----VYLGPALIVVPAS-LLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhc-cc----CCCCCeEEEecHH-HHHHHHHHHh
Confidence 467899999987644 26678888999999998755555442221 11 1123488888865 5566777776
Q ss_pred HHhhhcCCce-eEEeeCCCch----HHHHH-HhcCC----CcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc
Q psy15524 79 KLCKSFTWIV-PSWLTGGEKM----KSEKA-RIRKG----ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 148 (930)
Q Consensus 79 ~~~~~~~~~~-~~~~~g~~~~----~~~~~-~l~~~----~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~ 148 (930)
++... .. +..+.|.... ..... ..... .+++++|.+.+.........+.-....++|+||+|.+-..
T Consensus 411 k~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 411 KFAPD---LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hhCcc---ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 66543 33 5555665541 22222 22222 7899999998877432223344567889999999996433
Q ss_pred CcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 149 GYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 149 ~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.- .....+. .+... ..+.+|.||
T Consensus 488 ~s-~~~~~l~-~~~~~----~~~~LtgTP 510 (866)
T COG0553 488 QS-SEGKALQ-FLKAL----NRLDLTGTP 510 (866)
T ss_pred hh-HHHHHHH-HHhhc----ceeeCCCCh
Confidence 21 1111212 33222 348899998
No 485
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.80 E-value=0.77 Score=53.27 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=26.7
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+.+++||||+|+|.... ...+++.+...++...+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a----~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS----FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH----HHHHHHHHhccCCCeEEEEEE
Confidence 457899999999887543 455666676655566666544
No 486
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.80 E-value=0.3 Score=58.61 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..+++-|.+|+-. ...+++|.|..|||||.+..--+...+... ...+..+|+++.|+..|..+.+++....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-----~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-----QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-----CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4689999998854 345689999999999998544443333321 1235679999999999999988887654
No 487
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.80 E-value=1.7 Score=51.48 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=25.5
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEE
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILL 582 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~ 582 (930)
...+++||||+|+|.... ...+++.+...++...+++.
T Consensus 118 g~~KV~IIDEah~Ls~~a----~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS----FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH----HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999987543 45566667654444555554
No 488
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.79 E-value=1.1 Score=60.42 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=76.7
Q ss_pred cCcHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~--~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.|++-|++|+..++... =.++.++.|+|||.+ +-.++..+.. .|..+++++||-.-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~--------~G~~V~~lAPTgrAA~~L~e~~g~~A- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE--------QGYEIQIITAGSLSAQELRQKIPRLA- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHhcchh-
Confidence 58999999999988753 489999999999975 3344444332 35679999999886665554321110
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.....+...+... .-..|...++ . ....+..-++|||||+-++.. .++..++....
T Consensus 499 -------------~Ti~~~l~~l~~~--~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~ 554 (1960)
T TIGR02760 499 -------------STFITWVKNLFND--DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLSN----NELLKLIDKAE 554 (1960)
T ss_pred -------------hhHHHHHHhhccc--ccchhHHHhh---c--ccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHh
Confidence 0011111111111 1112322232 1 223356778999999997753 34555555443
Q ss_pred hcCCCceEEEEE
Q psy15524 163 KQKPQFQSILLS 174 (930)
Q Consensus 163 ~~~~~~~~i~lS 174 (930)
... .++|++-
T Consensus 555 ~~g--arvVlvG 564 (1960)
T TIGR02760 555 QHN--SKLILLN 564 (1960)
T ss_pred hcC--CEEEEEc
Confidence 333 4555443
No 489
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.77 E-value=1.2 Score=48.54 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
+.++++.||||+|||..... +...+.. .|..+++ .+..+|..++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~--------~g~~V~y-~t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLD--------RGKSVIY-RTADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHH--------CCCeEEE-EEHHHHHHHHH
Confidence 57899999999999985443 3344432 1333544 44555555443
No 490
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=1.9 Score=47.94 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=25.6
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...+++||||+|.+.... ...+++.+...++...+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a----~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS----FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH----HHHHHHHHhcCCCCeEEEEEc
Confidence 456899999999886533 345666666544455555543
No 491
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=0.77 Score=52.03 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=19.6
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
....++||||||++.... ...++..+..
T Consensus 120 g~~KV~IIDEah~Ls~~A----~NALLKtLEE 147 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQS----FNALLKTLEE 147 (484)
T ss_pred CCCEEEEEechhhcCHHH----HHHHHHHhhc
Confidence 356899999999886543 4555666654
No 492
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.75 E-value=0.53 Score=61.02 Aligned_cols=125 Identities=18% Similarity=0.108 Sum_probs=81.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.+|+-|++||. ..|.+++|.|.-|||||.+.+--++..+... .+..++|+|+=|++-+.++.+++.+.....
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 36899999997 3688999999999999999877777766542 112359999999999999999988876532
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCC-CccEEEEccccc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS-KVEHLVLDEADR 144 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~-~l~~vViDE~h~ 144 (930)
.. .........+.+..-...-|+|-..+...+.+.....+. +-.+=|.||...
T Consensus 73 ~~-------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQ-------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Hh-------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 10 011112222223333457799987775444432221111 124456888775
No 493
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.73 E-value=0.27 Score=60.20 Aligned_cols=72 Identities=19% Similarity=0.137 Sum_probs=54.0
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
..+++-|.+++.. ....++|.|..|||||.+..--+...+... .-+...+|+|+.|+..|.++.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-----NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-----CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4688999999865 346799999999999998544444443321 11345799999999999999999888764
No 494
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.68 E-value=1 Score=52.52 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=78.0
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC---Ccc----eEE
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT---WIV----PSW 500 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~---~~~----~~~ 500 (930)
+.+-.++.+|=|.|||.+..+.+...+.. .|.+++|.+|...-+.++++.++..+...+ |.. ...
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~ 257 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVT 257 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEE
Confidence 34557888999999999865555543321 367899999999999999998888775321 110 011
Q ss_pred EeCCCch-HHHH-HHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccc
Q psy15524 501 LTGGEKM-KSEK-ARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 577 (930)
Q Consensus 501 ~~gg~~~-~~~~-~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~ 577 (930)
..||... .-.. .....| ..|.+++ +......-..++++|+|||.-+.+ +.+..++-.+.. .+.
T Consensus 258 vkgg~E~I~f~~p~gak~G~sti~F~A--------rs~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~--~~~ 323 (752)
T PHA03333 258 LKGTDENLEYISDPAAKEGKTTAHFLA--------SSPNAARGQNPDLVIVDEAAFVNP----GALLSVLPLMAV--KGT 323 (752)
T ss_pred eeCCeeEEEEecCcccccCcceeEEec--------ccCCCcCCCCCCEEEEECcccCCH----HHHHHHHHHHcc--CCC
Confidence 2222110 0000 000001 2233322 111222334578999999998865 444555555543 255
Q ss_pred eEEEEccccC
Q psy15524 578 QSILLSATLT 587 (930)
Q Consensus 578 q~vl~SAT~~ 587 (930)
+.+++|.+..
T Consensus 324 k~IiISS~~~ 333 (752)
T PHA03333 324 KQIHISSPVD 333 (752)
T ss_pred ceEEEeCCCC
Confidence 6677777753
No 495
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.67 E-value=0.27 Score=58.71 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=51.4
Q ss_pred cCcHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG-----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g-----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|+..|..++..+.++ +..++.+.||||||+...- ++..+ +..+|||+|...+|.|++..|+.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-----------~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-----------NRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-----------CCCEEEEECCHHHHHHHHHHHHH
Confidence 5889999999887643 2567999999999987443 33222 11289999999999999999999
Q ss_pred Hhh
Q psy15524 80 LCK 82 (930)
Q Consensus 80 ~~~ 82 (930)
++.
T Consensus 77 f~p 79 (655)
T TIGR00631 77 FFP 79 (655)
T ss_pred hCC
Confidence 874
No 496
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.61 E-value=0.38 Score=54.39 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=25.4
Q ss_pred CccEEEEcccccccccCcHHHHHHHHHHHhhcCC-CceEEEEEeec
Q psy15524 133 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATL 177 (930)
Q Consensus 133 ~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~-~~~~i~lSAT~ 177 (930)
..-+|||||+|.+.+......+..+++....... .+.+|+.+...
T Consensus 138 ~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred CEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 3457899999998733223445555554433222 34456655544
No 497
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=92.59 E-value=0.54 Score=56.52 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=51.6
Q ss_pred cCcHHHHHHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDG-----GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g-----~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|++.|..++..+.++ +..++.+.||||||+... .++... +..+|||+|+...|.|+++.+..
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----------~r~vLIVt~~~~~A~~l~~dL~~ 79 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----------QRPTLVLAHNKTLAAQLYSEFKE 79 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHHHHHHH
Confidence 5899999999987643 257799999999998743 232222 12399999999999999999988
Q ss_pred Hhh
Q psy15524 80 LCK 82 (930)
Q Consensus 80 ~~~ 82 (930)
++.
T Consensus 80 ~~~ 82 (652)
T PRK05298 80 FFP 82 (652)
T ss_pred hcC
Confidence 864
No 498
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.57 E-value=0.9 Score=48.33 Aligned_cols=172 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+++.++|... +..+--+.--+.+.-+..|.-+++.|++|+|||....--+.+.+.. .|..+++++ +.+-.
T Consensus 2 ~~~~~~~~~~-~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS-~E~~~ 71 (271)
T cd01122 2 EEIREALSNE-EVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTIS-LEEPV 71 (271)
T ss_pred chhhcccccc-CCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEE-cccCH
Q ss_pred HHHHHHHHHhhccCCCcceE--EEeCCCchHHHHHHHhcCCcEEEE------CchhHHHhhhccCCcccccceEEEEecc
Q psy15524 480 LQTLEIFTKLCKSFTWIVPS--WLTGGEKMKSEKARIRKGISILVA------TPGRLLDHCKHTETLKFSKVEHLVLDEA 551 (930)
Q Consensus 480 ~Q~~~~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~~~~~~Ilv~------Tp~rl~~~l~~~~~~~~~~l~~lVlDEa 551 (930)
.++...+............. ..............+.....+.+- |+..+...++. ...-..+++||||..
T Consensus 72 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~--~~~~~~~~~vvID~l 149 (271)
T cd01122 72 VRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRY--MAVSHGIQHIIIDNL 149 (271)
T ss_pred HHHHHHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHH--HHhcCCceEEEECCH
Q ss_pred hhhhhcC---------cHHHHHHHHHHHhhcCccceEEEEccc
Q psy15524 552 DRILDQG---------YERDIAEFLEILKKQKPQFQSILLSAT 585 (930)
Q Consensus 552 h~l~~~g---------~~~~l~~i~~~l~~~~~~~q~vl~SAT 585 (930)
+.+.... ....+..+....... ++.++++|-+
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~--~vtvll~sq~ 190 (271)
T cd01122 150 SIMVSDERASGDERKALDEIMTKLRGFATEH--GIHITLVSHL 190 (271)
T ss_pred HHHhccCCCchhHHHHHHHHHHHHHHHHHHh--CCEEEEEecc
No 499
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.52 E-value=2.2 Score=48.36 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=60.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc--ccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCc
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 97 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~--P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (930)
|+.+++.+|||+|||.....-+...... ..+.++.++. |.+.-+.++ ++.+....+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-------~~g~~V~li~~D~~r~~a~eq---L~~~a~~~~-vp--------- 280 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-------YGKKKVALITLDTYRIGAVEQ---LKTYAKIMG-IP--------- 280 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEECCccHHHHHHH---HHHHHHHhC-Cc---------
Confidence 5678999999999998655433322211 1123355444 333323322 222222111 11
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 98 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 98 ~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
-..+.++..+...+.. +.+.++|+||.+-..... .....+..++.. ...+...++.+|||
T Consensus 281 ------------~~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~--~~~~~~~~LVl~a~ 341 (424)
T PRK05703 281 ------------VEVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEF--SGEPIDVYLVLSAT 341 (424)
T ss_pred ------------eEccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc--cCCCCeEEEEEECC
Confidence 1222355555555443 346799999988653221 122233333331 22233457889998
Q ss_pred cCC
Q psy15524 177 LTP 179 (930)
Q Consensus 177 ~~~ 179 (930)
...
T Consensus 342 ~~~ 344 (424)
T PRK05703 342 TKY 344 (424)
T ss_pred CCH
Confidence 764
No 500
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.51 E-value=0.46 Score=57.77 Aligned_cols=82 Identities=21% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.+++-|.+++.. ....++|.|..|||||.+..--+...+.. ...+...+++|+.|+..|.++.+.+.+.++..
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~-----~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~ 73 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQN-----CGYKARNIAAVTFTNKAAREMKERVAKTLGKG 73 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh-----cCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc
Q ss_pred CCcceEEEe
Q psy15524 494 TWIVPSWLT 502 (930)
Q Consensus 494 ~~~~~~~~~ 502 (930)
....+.+.+
T Consensus 74 ~~~~v~v~T 82 (664)
T TIGR01074 74 EARGLTIST 82 (664)
T ss_pred ccCCeEEEe
Done!