Query psy15524
Match_columns 930
No_of_seqs 657 out of 5706
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 23:33:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 2.1E-62 7.3E-67 628.7 58.4 383 398-805 911-1346(1724)
2 2db3_A ATP-dependent RNA helic 100.0 2.6E-56 8.8E-61 509.1 44.0 360 390-775 56-416 (434)
3 3sqw_A ATP-dependent RNA helic 100.0 6.8E-54 2.3E-58 508.0 40.2 378 391-778 18-409 (579)
4 3i5x_A ATP-dependent RNA helic 100.0 1.4E-53 4.9E-58 505.5 40.3 438 397-875 78-528 (563)
5 2i4i_A ATP-dependent RNA helic 100.0 5.6E-52 1.9E-56 473.7 41.3 366 390-777 15-393 (417)
6 2j0s_A ATP-dependent RNA helic 100.0 1.1E-51 3.9E-56 469.9 37.8 364 390-785 37-402 (410)
7 1s2m_A Putative ATP-dependent 100.0 6.6E-50 2.3E-54 453.8 40.7 364 389-785 20-384 (400)
8 3fht_A ATP-dependent RNA helic 100.0 5E-50 1.7E-54 456.9 39.4 359 386-777 21-390 (412)
9 1xti_A Probable ATP-dependent 100.0 1.1E-49 3.8E-54 450.6 40.6 368 389-786 7-378 (391)
10 3eiq_A Eukaryotic initiation f 100.0 8.5E-50 2.9E-54 455.2 36.2 363 390-784 40-405 (414)
11 3fmp_B ATP-dependent RNA helic 100.0 1.4E-51 4.7E-56 478.2 19.5 359 386-777 88-457 (479)
12 1hv8_A Putative ATP-dependent 100.0 1.5E-48 5E-53 437.4 40.8 356 390-784 6-363 (367)
13 3pey_A ATP-dependent RNA helic 100.0 6.2E-48 2.1E-52 436.9 38.7 352 390-777 5-367 (395)
14 1fuu_A Yeast initiation factor 100.0 3.9E-49 1.3E-53 446.6 21.3 355 390-777 21-376 (394)
15 2v1x_A ATP-dependent DNA helic 100.0 1.2E-46 4E-51 440.9 36.7 345 391-777 22-384 (591)
16 2z0m_A 337AA long hypothetical 100.0 5.5E-46 1.9E-50 411.3 38.0 332 398-777 1-332 (337)
17 1oyw_A RECQ helicase, ATP-depe 100.0 3.1E-46 1.1E-50 433.5 34.6 345 390-778 2-354 (523)
18 1tf5_A Preprotein translocase 100.0 3.9E-46 1.3E-50 433.5 29.5 338 407-769 77-547 (844)
19 3oiy_A Reverse gyrase helicase 100.0 4.6E-45 1.6E-49 415.4 30.8 327 400-776 8-372 (414)
20 3fho_A ATP-dependent RNA helic 100.0 1.9E-45 6.6E-50 427.4 20.4 346 397-777 125-481 (508)
21 1nkt_A Preprotein translocase 100.0 3.2E-43 1.1E-47 407.4 34.1 342 403-769 101-619 (922)
22 2fsf_A Preprotein translocase 100.0 6.1E-44 2.1E-48 413.5 26.5 338 407-769 68-585 (853)
23 3l9o_A ATP-dependent RNA helic 100.0 6.4E-43 2.2E-47 434.4 31.8 355 391-778 163-609 (1108)
24 2va8_A SSO2462, SKI2-type heli 100.0 6E-42 2.1E-46 416.2 37.9 347 389-769 7-410 (715)
25 2zj8_A DNA helicase, putative 100.0 8.3E-42 2.8E-46 414.6 36.2 337 391-770 2-390 (720)
26 4ddu_A Reverse gyrase; topoiso 100.0 3.3E-42 1.1E-46 427.9 31.7 328 402-777 67-500 (1104)
27 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-42 4.8E-47 420.2 26.5 347 391-770 2-391 (702)
28 4f92_B U5 small nuclear ribonu 100.0 3.8E-42 1.3E-46 441.6 30.6 390 411-822 76-523 (1724)
29 4a2p_A RIG-I, retinoic acid in 100.0 5.1E-42 1.8E-46 406.7 28.5 345 410-770 3-511 (556)
30 3tbk_A RIG-I helicase domain; 100.0 2.8E-41 9.6E-46 400.3 29.2 346 414-775 4-515 (555)
31 2xgj_A ATP-dependent RNA helic 100.0 2.3E-40 7.9E-45 408.0 36.4 335 409-778 82-511 (1010)
32 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-40 4.1E-45 408.3 30.6 346 409-770 243-752 (797)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 1.5E-41 5.2E-46 422.8 22.1 327 402-777 46-464 (1054)
34 2ykg_A Probable ATP-dependent 100.0 7E-41 2.4E-45 407.2 24.8 357 409-775 8-524 (696)
35 2whx_A Serine protease/ntpase/ 100.0 1.7E-41 5.8E-46 398.3 7.7 390 397-879 156-569 (618)
36 4a2w_A RIG-I, retinoic acid in 100.0 3.6E-39 1.2E-43 398.7 28.6 351 410-770 244-752 (936)
37 1gm5_A RECG; helicase, replica 100.0 1.5E-39 5.3E-44 387.9 23.4 330 401-775 356-705 (780)
38 4a4z_A Antiviral helicase SKI2 100.0 1.5E-38 5.2E-43 391.9 31.2 336 409-777 35-504 (997)
39 2jlq_A Serine protease subunit 100.0 3.6E-40 1.2E-44 376.5 13.6 372 411-878 1-401 (451)
40 1yks_A Genome polyprotein [con 100.0 3.2E-41 1.1E-45 383.1 3.9 357 425-879 4-390 (440)
41 1wp9_A ATP-dependent RNA helic 100.0 5.1E-37 1.7E-41 357.7 36.0 331 414-770 9-478 (494)
42 2eyq_A TRCF, transcription-rep 100.0 8.4E-37 2.9E-41 382.2 38.1 326 397-768 587-923 (1151)
43 4gl2_A Interferon-induced heli 100.0 1.1E-38 3.8E-43 388.0 19.8 337 414-767 7-518 (699)
44 2z83_A Helicase/nucleoside tri 100.0 9.5E-40 3.3E-44 373.5 6.4 363 423-880 15-405 (459)
45 2wv9_A Flavivirin protease NS2 100.0 1.7E-39 6E-44 383.2 3.2 368 414-879 215-624 (673)
46 2xau_A PRE-mRNA-splicing facto 100.0 5.9E-36 2E-40 360.1 27.0 341 390-769 72-445 (773)
47 2oca_A DAR protein, ATP-depend 100.0 5.2E-36 1.8E-40 350.4 22.3 320 412-765 111-453 (510)
48 3jux_A Protein translocase sub 100.0 6.5E-34 2.2E-38 322.1 35.2 332 403-769 65-589 (822)
49 3o8b_A HCV NS3 protease/helica 100.0 5.9E-36 2E-40 346.5 16.0 279 415-770 218-517 (666)
50 2fwr_A DNA repair protein RAD2 100.0 1.8E-35 6.1E-40 342.3 16.0 297 414-763 93-448 (472)
51 3rc3_A ATP-dependent RNA helic 100.0 5.7E-34 1.9E-38 334.8 28.7 287 423-778 149-455 (677)
52 2v6i_A RNA helicase; membrane, 100.0 5.9E-34 2E-38 322.9 21.2 270 428-764 1-288 (431)
53 3fmo_B ATP-dependent RNA helic 100.0 8.6E-34 2.9E-38 305.3 21.3 208 386-607 88-298 (300)
54 3fe2_A Probable ATP-dependent 100.0 4.3E-33 1.5E-37 291.6 24.2 211 390-608 29-239 (242)
55 3ber_A Probable ATP-dependent 100.0 3E-32 1E-36 285.7 24.7 205 390-606 43-247 (249)
56 3h1t_A Type I site-specific re 100.0 4.3E-33 1.5E-37 331.0 20.4 323 413-756 177-545 (590)
57 3iuy_A Probable ATP-dependent 100.0 1E-32 3.5E-37 286.2 20.6 208 390-605 19-227 (228)
58 1vec_A ATP-dependent RNA helic 100.0 4.1E-32 1.4E-36 277.0 23.5 203 390-604 3-205 (206)
59 3ly5_A ATP-dependent RNA helic 100.0 2.5E-32 8.7E-37 288.6 22.6 209 386-601 48-257 (262)
60 2db3_A ATP-dependent RNA helic 100.0 7.6E-32 2.6E-36 307.1 27.6 250 1-332 74-323 (434)
61 2oxc_A Probable ATP-dependent 100.0 4.7E-32 1.6E-36 281.3 22.8 204 390-606 24-228 (230)
62 2ipc_A Preprotein translocase 100.0 5.6E-31 1.9E-35 303.5 33.6 139 402-555 68-215 (997)
63 1q0u_A Bstdead; DEAD protein, 100.0 2.5E-32 8.6E-37 281.3 18.5 207 390-608 4-213 (219)
64 1wrb_A DJVLGB; RNA helicase, D 100.0 9.7E-32 3.3E-36 283.5 22.4 216 390-609 23-242 (253)
65 2pl3_A Probable ATP-dependent 100.0 2.1E-31 7.1E-36 277.9 24.0 209 390-607 25-233 (236)
66 3bor_A Human initiation factor 100.0 1.1E-31 3.8E-36 279.7 20.5 205 390-607 30-235 (237)
67 2gxq_A Heat resistant RNA depe 100.0 3.9E-31 1.3E-35 270.0 23.1 204 391-606 2-205 (207)
68 1t6n_A Probable ATP-dependent 100.0 8.1E-31 2.8E-35 270.3 22.1 204 390-605 14-219 (220)
69 1qde_A EIF4A, translation init 100.0 1.5E-30 5E-35 269.3 20.8 205 390-608 14-218 (224)
70 3dmq_A RNA polymerase-associat 100.0 3.2E-30 1.1E-34 318.9 25.3 329 413-766 152-612 (968)
71 3dkp_A Probable ATP-dependent 100.0 1.9E-30 6.4E-35 272.3 17.4 209 391-608 26-242 (245)
72 2i4i_A ATP-dependent RNA helic 100.0 2.9E-29 9.9E-34 285.8 26.9 254 1-332 33-299 (417)
73 3fe2_A Probable ATP-dependent 100.0 2.6E-29 8.8E-34 262.8 20.5 193 1-260 47-239 (242)
74 1z63_A Helicase of the SNF2/RA 100.0 8.6E-29 2.9E-33 288.4 25.4 318 413-767 36-453 (500)
75 2j0s_A ATP-dependent RNA helic 100.0 6.3E-29 2.1E-33 282.2 23.6 244 1-332 55-299 (410)
76 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.1E-28 7.3E-33 299.3 28.5 330 413-765 270-707 (1038)
77 3iuy_A Probable ATP-dependent 100.0 8.5E-29 2.9E-33 256.6 19.7 158 1-161 38-195 (228)
78 3fmo_B ATP-dependent RNA helic 100.0 5.3E-29 1.8E-33 267.9 17.4 186 1-259 110-298 (300)
79 3ber_A Probable ATP-dependent 100.0 4.5E-28 1.6E-32 253.9 22.0 187 1-258 61-247 (249)
80 3ly5_A ATP-dependent RNA helic 100.0 3.3E-28 1.1E-32 257.0 19.4 171 1-177 72-242 (262)
81 3sqw_A ATP-dependent RNA helic 100.0 1.1E-27 3.8E-32 283.3 26.0 266 1-332 39-311 (579)
82 3eiq_A Eukaryotic initiation f 100.0 9.8E-28 3.3E-32 272.9 24.3 244 1-332 58-303 (414)
83 1vec_A ATP-dependent RNA helic 100.0 9E-28 3.1E-32 244.8 21.6 167 1-177 21-187 (206)
84 1xti_A Probable ATP-dependent 100.0 1.1E-27 3.7E-32 270.3 24.2 246 1-332 26-273 (391)
85 1s2m_A Putative ATP-dependent 100.0 1.5E-27 5.1E-32 270.0 25.0 243 1-332 39-281 (400)
86 1wrb_A DJVLGB; RNA helicase, D 100.0 9.4E-28 3.2E-32 253.0 21.5 199 1-261 41-242 (253)
87 3i5x_A ATP-dependent RNA helic 100.0 1.6E-27 5.6E-32 281.9 26.1 266 1-332 90-362 (563)
88 2oxc_A Probable ATP-dependent 100.0 1.1E-27 3.8E-32 248.3 21.1 154 1-162 42-196 (230)
89 3fht_A ATP-dependent RNA helic 100.0 2.1E-27 7.3E-32 269.9 22.8 243 1-332 43-289 (412)
90 3fmp_B ATP-dependent RNA helic 100.0 2.9E-28 9.9E-33 282.2 15.8 243 1-332 110-356 (479)
91 2pl3_A Probable ATP-dependent 100.0 2.8E-27 9.6E-32 246.6 21.7 191 1-259 43-233 (236)
92 1q0u_A Bstdead; DEAD protein, 100.0 7.4E-28 2.5E-32 247.8 16.8 167 1-177 22-191 (219)
93 3bor_A Human initiation factor 99.9 1.5E-27 5.1E-32 248.5 18.1 186 1-258 48-234 (237)
94 1fuu_A Yeast initiation factor 99.9 2.3E-27 7.8E-32 267.9 18.5 243 1-332 39-282 (394)
95 1z3i_X Similar to RAD54-like; 99.9 1.4E-25 4.8E-30 266.8 33.1 327 414-767 55-528 (644)
96 2gxq_A Heat resistant RNA depe 99.9 1.1E-26 3.6E-31 237.1 19.3 154 1-161 19-172 (207)
97 1qde_A EIF4A, translation init 99.9 1E-26 3.4E-31 240.4 19.0 152 1-161 32-183 (224)
98 1c4o_A DNA nucleotide excision 99.9 3E-25 1E-29 263.4 32.8 136 633-777 420-560 (664)
99 1hv8_A Putative ATP-dependent 99.9 4.9E-26 1.7E-30 254.3 24.7 237 1-332 24-261 (367)
100 1t6n_A Probable ATP-dependent 99.9 1.5E-26 5.3E-31 238.2 18.9 168 1-178 32-201 (220)
101 3dkp_A Probable ATP-dependent 99.9 5.9E-27 2E-31 245.6 15.9 191 1-260 47-242 (245)
102 3pey_A ATP-dependent RNA helic 99.9 4.6E-26 1.6E-30 257.3 24.2 240 1-332 23-266 (395)
103 3mwy_W Chromo domain-containin 99.9 1.6E-25 5.5E-30 273.2 30.3 332 413-777 235-696 (800)
104 3oiy_A Reverse gyrase helicase 99.9 1.6E-26 5.6E-31 262.4 18.8 241 2-332 19-275 (414)
105 2z0m_A 337AA long hypothetical 99.9 1E-25 3.5E-30 248.5 23.3 160 1-178 12-171 (337)
106 2d7d_A Uvrabc system protein B 99.9 3.6E-24 1.2E-28 254.0 33.3 136 633-777 426-566 (661)
107 4ddu_A Reverse gyrase; topoiso 99.9 1.6E-25 5.6E-30 278.3 17.9 244 1-333 75-333 (1104)
108 2ykg_A Probable ATP-dependent 99.9 6.3E-25 2.2E-29 266.7 22.6 174 1-179 9-185 (696)
109 3fho_A ATP-dependent RNA helic 99.9 2.8E-25 9.6E-30 257.8 18.2 240 1-332 137-380 (508)
110 1oyw_A RECQ helicase, ATP-depe 99.9 5.3E-25 1.8E-29 255.3 18.0 160 1-179 21-186 (523)
111 2v1x_A ATP-dependent DNA helic 99.9 1.2E-24 4.2E-29 254.6 21.0 161 1-179 40-212 (591)
112 2hjv_A ATP-dependent RNA helic 99.9 2.9E-24 9.8E-29 209.3 19.4 146 622-777 7-152 (163)
113 2p6n_A ATP-dependent RNA helic 99.9 1.8E-24 6.2E-29 215.7 17.5 163 595-777 9-172 (191)
114 3l9o_A ATP-dependent RNA helic 99.9 4.4E-24 1.5E-28 265.6 21.8 153 3-180 182-334 (1108)
115 1t5i_A C_terminal domain of A 99.9 4.1E-24 1.4E-28 209.8 17.1 154 622-785 3-158 (172)
116 4a2p_A RIG-I, retinoic acid in 99.9 2.3E-23 7.9E-28 246.4 26.9 175 1-180 3-179 (556)
117 2rb4_A ATP-dependent RNA helic 99.9 8.9E-24 3.1E-28 208.5 18.6 154 621-784 4-165 (175)
118 2jgn_A DBX, DDX3, ATP-dependen 99.9 8.3E-24 2.8E-28 210.1 16.0 149 620-777 15-163 (185)
119 1fuk_A Eukaryotic initiation f 99.9 1.5E-23 5.2E-28 204.7 17.6 145 623-777 2-147 (165)
120 3eaq_A Heat resistant RNA depe 99.9 2.2E-23 7.6E-28 212.0 18.9 145 624-778 5-149 (212)
121 1gku_B Reverse gyrase, TOP-RG; 99.9 3.1E-24 1.1E-28 267.3 14.8 238 1-332 54-298 (1054)
122 3tbk_A RIG-I helicase domain; 99.9 1.1E-22 3.7E-27 240.6 26.5 171 5-180 4-177 (555)
123 2p6r_A Afuhel308 helicase; pro 99.9 1.4E-23 4.9E-28 253.7 19.2 164 1-179 21-184 (702)
124 4a2q_A RIG-I, retinoic acid in 99.9 1.9E-22 6.4E-27 247.1 27.6 174 1-179 244-419 (797)
125 1tf5_A Preprotein translocase 99.9 1.7E-23 5.8E-28 244.0 16.8 302 1-334 80-457 (844)
126 2xgj_A ATP-dependent RNA helic 99.9 6E-23 2.1E-27 253.2 22.0 153 1-179 83-235 (1010)
127 2va8_A SSO2462, SKI2-type heli 99.9 1.1E-22 3.9E-27 246.8 24.0 161 1-179 26-187 (715)
128 2fsf_A Preprotein translocase 99.9 3.2E-23 1.1E-27 240.8 17.6 301 2-334 72-466 (853)
129 2zj8_A DNA helicase, putative 99.9 6.6E-23 2.3E-27 248.6 20.9 162 1-179 19-181 (720)
130 4a4z_A Antiviral helicase SKI2 99.9 3.8E-23 1.3E-27 255.0 17.1 157 1-181 36-192 (997)
131 3i32_A Heat resistant RNA depe 99.9 1.3E-22 4.4E-27 215.8 17.8 144 625-778 3-146 (300)
132 1nkt_A Preprotein translocase 99.9 2.1E-22 7.1E-27 234.1 19.2 302 1-334 108-485 (922)
133 4a2w_A RIG-I, retinoic acid in 99.9 1.4E-21 4.7E-26 241.7 24.5 173 2-179 245-419 (936)
134 3b6e_A Interferon-induced heli 99.9 4.3E-22 1.5E-26 204.3 14.1 172 409-585 28-216 (216)
135 2yjt_D ATP-dependent RNA helic 99.8 1.5E-23 5.3E-28 205.6 0.0 144 624-777 3-147 (170)
136 3b6e_A Interferon-induced heli 99.9 1.3E-21 4.5E-26 200.7 14.0 168 4-176 32-216 (216)
137 2vl7_A XPD; helicase, unknown 99.9 1.1E-20 3.6E-25 220.0 21.6 115 639-766 370-520 (540)
138 4gl2_A Interferon-induced heli 99.9 1.2E-21 4.1E-26 238.0 13.5 171 5-180 7-194 (699)
139 3llm_A ATP-dependent RNA helic 99.8 9.5E-21 3.3E-25 196.5 15.2 170 413-601 60-231 (235)
140 1gm5_A RECG; helicase, replica 99.8 8.6E-21 2.9E-25 226.5 16.1 154 1-179 365-528 (780)
141 1wp9_A ATP-dependent RNA helic 99.8 2.7E-19 9.1E-24 207.8 26.8 160 5-179 9-168 (494)
142 3crv_A XPD/RAD3 related DNA he 99.8 1E-18 3.5E-23 204.2 29.2 129 414-556 3-187 (551)
143 2eyq_A TRCF, transcription-rep 99.8 4.1E-19 1.4E-23 222.6 25.8 154 1-179 600-763 (1151)
144 2jlq_A Serine protease subunit 99.8 4.6E-20 1.6E-24 210.3 8.4 152 2-179 1-153 (451)
145 1rif_A DAR protein, DNA helica 99.8 1.2E-19 4E-24 194.1 9.8 153 414-589 113-265 (282)
146 2oca_A DAR protein, ATP-depend 99.8 7E-19 2.4E-23 205.2 15.2 152 5-179 113-264 (510)
147 1rif_A DAR protein, DNA helica 99.8 7E-19 2.4E-23 188.0 13.2 154 5-181 113-266 (282)
148 2fwr_A DNA repair protein RAD2 99.8 7.4E-19 2.5E-23 202.9 14.1 138 5-180 93-231 (472)
149 3llm_A ATP-dependent RNA helic 99.8 1.7E-18 5.8E-23 179.5 15.2 160 5-181 61-222 (235)
150 2whx_A Serine protease/ntpase/ 99.8 2.2E-19 7.7E-24 210.6 6.3 153 3-180 169-321 (618)
151 2ipc_A Preprotein translocase 99.7 7.2E-18 2.4E-22 195.2 15.4 131 1-146 76-215 (997)
152 3o8b_A HCV NS3 protease/helica 99.7 1.1E-18 3.8E-23 202.4 7.2 143 8-179 220-362 (666)
153 3h1t_A Type I site-specific re 99.7 4.7E-18 1.6E-22 201.6 8.6 157 5-179 178-343 (590)
154 4a15_A XPD helicase, ATP-depen 99.7 2.6E-16 9E-21 184.9 23.2 118 639-767 434-584 (620)
155 2wv9_A Flavivirin protease NS2 99.7 1.9E-18 6.5E-23 204.0 4.3 150 5-179 215-375 (673)
156 2fz4_A DNA repair protein RAD2 99.7 6.7E-17 2.3E-21 167.1 13.4 139 413-588 92-230 (237)
157 1yks_A Genome polyprotein [con 99.7 2.8E-18 9.5E-23 194.6 2.9 133 16-180 4-143 (440)
158 2v6i_A RNA helicase; membrane, 99.7 7.9E-17 2.7E-21 182.3 13.5 136 19-179 1-136 (431)
159 2fz4_A DNA repair protein RAD2 99.7 1.6E-16 5.5E-21 164.2 14.2 138 5-180 93-231 (237)
160 2z83_A Helicase/nucleoside tri 99.7 3E-17 1E-21 187.3 8.7 135 15-179 16-155 (459)
161 2xau_A PRE-mRNA-splicing facto 99.7 5.4E-16 1.9E-20 186.7 19.2 158 4-178 92-251 (773)
162 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 1.4E-16 4.8E-21 195.2 13.4 155 5-180 271-441 (1038)
163 1z5z_A Helicase of the SNF2/RA 99.6 5.8E-16 2E-20 162.7 13.4 128 633-767 93-224 (271)
164 1z63_A Helicase of the SNF2/RA 99.5 1.3E-13 4.6E-18 160.0 18.4 149 5-179 37-189 (500)
165 3dmq_A RNA polymerase-associat 99.5 6.1E-14 2.1E-18 173.6 15.6 161 5-179 153-318 (968)
166 3rc3_A ATP-dependent RNA helic 99.5 1.8E-14 6.3E-19 169.4 7.4 132 15-177 150-281 (677)
167 3crv_A XPD/RAD3 related DNA he 99.4 3E-13 1E-17 158.0 12.7 132 2-147 1-187 (551)
168 1z3i_X Similar to RAD54-like; 99.4 1.6E-11 5.4E-16 145.9 23.9 161 5-179 55-232 (644)
169 3mwy_W Chromo domain-containin 99.4 4.5E-12 1.5E-16 154.6 17.9 155 5-178 236-406 (800)
170 2vl7_A XPD; helicase, unknown 99.3 2.2E-12 7.4E-17 150.0 8.3 128 1-146 4-188 (540)
171 3jux_A Protein translocase sub 99.3 2.1E-10 7.3E-15 131.0 21.9 301 2-333 73-498 (822)
172 4a15_A XPD helicase, ATP-depen 99.0 8E-10 2.7E-14 129.8 11.5 71 5-83 3-77 (620)
173 1w36_D RECD, exodeoxyribonucle 98.7 5.2E-08 1.8E-12 114.4 11.0 145 416-585 151-298 (608)
174 1w36_D RECD, exodeoxyribonucle 98.4 3.7E-07 1.3E-11 107.1 8.9 144 7-175 151-297 (608)
175 1c4o_A DNA nucleotide excision 98.3 2.4E-06 8.1E-11 101.3 11.1 68 2-82 6-78 (664)
176 2d7d_A Uvrabc system protein B 98.1 1.9E-05 6.5E-10 93.5 13.6 66 5-82 12-82 (661)
177 4b3f_X DNA-binding protein smu 97.8 7.8E-05 2.7E-09 88.5 11.8 67 414-489 189-256 (646)
178 3upu_A ATP-dependent DNA helic 97.7 0.00012 4E-09 83.1 12.1 69 410-486 21-94 (459)
179 2gk6_A Regulator of nonsense t 97.7 0.00022 7.4E-09 84.1 14.3 70 412-489 178-247 (624)
180 3e1s_A Exodeoxyribonuclease V, 97.7 9.9E-05 3.4E-09 85.6 10.7 64 414-486 189-252 (574)
181 4b3f_X DNA-binding protein smu 97.7 7E-05 2.4E-09 88.9 9.6 68 4-80 188-256 (646)
182 3upu_A ATP-dependent DNA helic 97.6 0.00034 1.2E-08 79.2 12.5 69 1-77 21-94 (459)
183 2gk6_A Regulator of nonsense t 97.5 0.00044 1.5E-08 81.5 13.5 69 4-80 179-247 (624)
184 2wjy_A Regulator of nonsense t 97.5 0.00047 1.6E-08 82.9 13.6 70 412-489 354-423 (800)
185 2xzl_A ATP-dependent helicase 97.5 0.00079 2.7E-08 81.1 14.6 70 412-489 358-427 (802)
186 2xzl_A ATP-dependent helicase 97.4 0.00075 2.6E-08 81.3 13.9 70 3-80 358-427 (802)
187 3e1s_A Exodeoxyribonuclease V, 97.4 0.00086 2.9E-08 77.7 12.7 63 5-76 189-251 (574)
188 2wjy_A Regulator of nonsense t 97.3 0.00099 3.4E-08 80.1 12.8 69 4-80 355-423 (800)
189 2o0j_A Terminase, DNA packagin 97.1 0.003 1E-07 68.6 12.6 74 5-85 163-236 (385)
190 2o0j_A Terminase, DNA packagin 96.9 0.0031 1.1E-07 68.6 10.4 74 414-494 163-236 (385)
191 3cpe_A Terminase, DNA packagin 96.5 0.0099 3.4E-07 69.4 11.6 74 5-85 163-236 (592)
192 3cpe_A Terminase, DNA packagin 96.5 0.008 2.7E-07 70.2 10.6 74 414-494 163-236 (592)
193 2p6n_A ATP-dependent RNA helic 96.4 0.0029 9.9E-08 62.1 5.5 69 247-332 9-77 (191)
194 3hgt_A HDA1 complex subunit 3; 96.4 0.015 5.2E-07 60.8 10.7 124 634-770 107-240 (328)
195 3ec2_A DNA replication protein 95.9 0.06 2E-06 51.9 12.0 32 7-38 16-56 (180)
196 2kjq_A DNAA-related protein; s 95.8 0.019 6.5E-07 53.5 7.8 43 541-586 82-124 (149)
197 3ec2_A DNA replication protein 95.6 0.076 2.6E-06 51.1 11.3 18 428-445 37-54 (180)
198 3lfu_A DNA helicase II; SF1 he 95.5 0.023 7.7E-07 67.5 8.5 72 413-491 8-79 (647)
199 3lfu_A DNA helicase II; SF1 he 95.5 0.025 8.5E-07 67.1 8.8 71 4-81 8-78 (647)
200 1t5i_A C_terminal domain of A 95.4 0.011 3.7E-07 56.8 4.6 52 274-332 3-54 (172)
201 2hjv_A ATP-dependent RNA helic 95.4 0.01 3.6E-07 56.3 4.3 53 273-332 6-58 (163)
202 2rb4_A ATP-dependent RNA helic 95.3 0.016 5.3E-07 55.9 5.3 53 273-332 4-57 (175)
203 3te6_A Regulatory protein SIR3 95.3 0.11 3.7E-06 54.8 12.1 43 542-587 132-174 (318)
204 3te6_A Regulatory protein SIR3 95.3 0.096 3.3E-06 55.3 11.6 45 132-179 131-175 (318)
205 2jgn_A DBX, DDX3, ATP-dependen 95.0 0.027 9.4E-07 54.7 5.9 55 272-332 15-69 (185)
206 1fuk_A Eukaryotic initiation f 95.0 0.019 6.5E-07 54.6 4.6 51 275-332 2-53 (165)
207 1pjr_A PCRA; DNA repair, DNA r 94.7 0.057 2E-06 64.6 9.0 72 4-82 10-81 (724)
208 3vkw_A Replicase large subunit 94.6 0.064 2.2E-06 58.9 8.1 83 432-554 164-246 (446)
209 2orw_A Thymidine kinase; TMTK, 94.5 0.024 8.3E-07 54.9 4.2 39 429-476 3-41 (184)
210 1pjr_A PCRA; DNA repair, DNA r 94.4 0.074 2.5E-06 63.6 8.9 72 413-491 10-81 (724)
211 2b8t_A Thymidine kinase; deoxy 94.3 0.048 1.6E-06 54.4 5.7 91 429-555 12-102 (223)
212 1uaa_A REP helicase, protein ( 94.2 0.069 2.3E-06 63.5 8.1 71 414-491 2-72 (673)
213 1uaa_A REP helicase, protein ( 94.2 0.079 2.7E-06 63.0 8.4 71 5-82 2-72 (673)
214 2kjq_A DNAA-related protein; s 93.9 0.065 2.2E-06 49.8 5.6 44 133-179 83-126 (149)
215 3u4q_A ATP-dependent helicase/ 93.9 0.08 2.7E-06 67.3 8.1 73 413-490 9-81 (1232)
216 3eie_A Vacuolar protein sortin 93.9 0.25 8.6E-06 52.6 10.9 44 543-586 111-162 (322)
217 1l8q_A Chromosomal replication 93.8 0.28 9.6E-06 52.2 11.1 25 429-454 37-61 (324)
218 3u4q_A ATP-dependent helicase/ 93.7 0.093 3.2E-06 66.7 8.1 108 5-124 10-117 (1232)
219 1xx6_A Thymidine kinase; NESG, 93.6 0.24 8.2E-06 48.0 9.2 39 429-476 8-46 (191)
220 2b8t_A Thymidine kinase; deoxy 93.6 0.07 2.4E-06 53.2 5.4 92 19-146 11-102 (223)
221 2zpa_A Uncharacterized protein 93.4 0.11 3.6E-06 60.2 7.2 113 414-587 175-289 (671)
222 3u61_B DNA polymerase accessor 93.4 0.58 2E-05 49.7 12.8 39 542-583 105-143 (324)
223 2w58_A DNAI, primosome compone 93.3 0.68 2.3E-05 45.2 12.3 24 430-454 55-78 (202)
224 1a5t_A Delta prime, HOLB; zinc 93.2 0.46 1.6E-05 50.8 11.6 36 6-41 3-45 (334)
225 1l8q_A Chromosomal replication 93.2 0.55 1.9E-05 49.9 12.1 18 21-38 38-55 (324)
226 2chg_A Replication factor C sm 93.1 1.1 3.9E-05 43.9 13.9 40 132-175 101-140 (226)
227 3h4m_A Proteasome-activating n 93.0 0.47 1.6E-05 49.3 11.1 19 428-446 50-68 (285)
228 3bos_A Putative DNA replicatio 92.9 0.82 2.8E-05 45.8 12.6 19 428-446 51-69 (242)
229 2j9r_A Thymidine kinase; TK1, 92.8 0.19 6.4E-06 49.4 7.0 37 432-477 31-67 (214)
230 3vkw_A Replicase large subunit 92.8 0.081 2.8E-06 58.1 4.9 83 23-145 164-246 (446)
231 2orw_A Thymidine kinase; TMTK, 92.7 0.25 8.5E-06 47.7 7.7 40 19-67 2-41 (184)
232 2v1u_A Cell division control p 92.6 0.41 1.4E-05 52.1 10.5 17 429-445 44-60 (387)
233 3cf0_A Transitional endoplasmi 92.5 0.65 2.2E-05 48.7 11.4 19 428-446 48-66 (301)
234 1xx6_A Thymidine kinase; NESG, 92.2 0.48 1.6E-05 45.9 9.1 39 20-67 8-46 (191)
235 1a5t_A Delta prime, HOLB; zinc 92.2 0.48 1.7E-05 50.6 10.0 40 541-584 107-146 (334)
236 1d2n_A N-ethylmaleimide-sensit 92.1 1.3 4.5E-05 45.5 13.1 47 542-588 124-177 (272)
237 3syl_A Protein CBBX; photosynt 92.1 0.26 8.9E-06 52.0 7.8 40 544-583 132-176 (309)
238 3syl_A Protein CBBX; photosynt 92.1 0.15 5.1E-06 53.9 5.8 42 135-176 132-178 (309)
239 2yjt_D ATP-dependent RNA helic 91.3 0.028 9.6E-07 53.7 0.0 50 276-332 3-53 (170)
240 2chg_A Replication factor C sm 92.0 1.6 5.3E-05 42.9 13.1 40 541-584 101-140 (226)
241 3vfd_A Spastin; ATPase, microt 92.0 0.48 1.6E-05 51.9 10.0 18 429-446 148-165 (389)
242 1w4r_A Thymidine kinase; type 91.9 0.6 2.1E-05 45.0 9.1 38 429-475 20-57 (195)
243 2z4s_A Chromosomal replication 91.7 1 3.5E-05 50.1 12.3 19 20-38 130-148 (440)
244 2zpa_A Uncharacterized protein 91.7 0.33 1.1E-05 56.2 8.3 114 5-179 175-290 (671)
245 2orv_A Thymidine kinase; TP4A 91.6 0.38 1.3E-05 47.7 7.6 39 429-476 19-57 (234)
246 2z4s_A Chromosomal replication 91.4 1.2 4E-05 49.6 12.4 25 429-454 130-154 (440)
247 3eaq_A Heat resistant RNA depe 91.2 0.12 4.2E-06 51.2 3.7 51 275-332 4-54 (212)
248 2r6a_A DNAB helicase, replicat 91.1 1.6 5.4E-05 48.8 13.1 144 19-176 202-363 (454)
249 3e2i_A Thymidine kinase; Zn-bi 91.1 0.26 9E-06 48.2 5.8 39 429-476 28-66 (219)
250 1njg_A DNA polymerase III subu 91.1 6.2 0.00021 39.0 16.7 38 542-583 126-163 (250)
251 3i32_A Heat resistant RNA depe 91.1 0.12 4.3E-06 54.1 3.7 50 276-332 2-51 (300)
252 2v1u_A Cell division control p 91.1 0.79 2.7E-05 49.8 10.5 19 20-38 44-62 (387)
253 4b4t_J 26S protease regulatory 90.9 2 6.7E-05 46.6 12.9 53 389-445 144-198 (405)
254 1g5t_A COB(I)alamin adenosyltr 90.8 0.49 1.7E-05 45.7 7.3 141 430-595 29-172 (196)
255 1g5t_A COB(I)alamin adenosyltr 90.6 0.58 2E-05 45.2 7.6 36 21-65 29-64 (196)
256 3kl4_A SRP54, signal recogniti 90.5 1.3 4.3E-05 48.8 11.2 52 541-595 178-232 (433)
257 4b4t_M 26S protease regulatory 90.5 1.1 3.8E-05 49.2 10.8 53 389-445 177-231 (434)
258 3bos_A Putative DNA replicatio 90.4 0.65 2.2E-05 46.5 8.4 19 20-38 52-70 (242)
259 1iqp_A RFCS; clamp loader, ext 90.3 2.2 7.5E-05 45.0 13.0 39 541-583 109-147 (327)
260 2qz4_A Paraplegin; AAA+, SPG7, 90.2 1.2 4.2E-05 45.3 10.5 18 429-446 39-56 (262)
261 3h4m_A Proteasome-activating n 90.0 0.5 1.7E-05 49.1 7.3 20 19-38 50-69 (285)
262 1sxj_D Activator 1 41 kDa subu 90.0 1.4 4.9E-05 47.1 11.3 38 542-583 133-170 (353)
263 2qby_A CDC6 homolog 1, cell di 89.7 1.6 5.6E-05 47.2 11.6 25 429-454 45-69 (386)
264 3pfi_A Holliday junction ATP-d 89.7 2.5 8.6E-05 44.9 12.9 17 430-446 56-72 (338)
265 1fnn_A CDC6P, cell division co 89.7 1.5 5.1E-05 47.6 11.3 16 431-446 46-61 (389)
266 2qgz_A Helicase loader, putati 89.5 1.1 3.6E-05 47.3 9.4 26 429-455 152-177 (308)
267 1sxj_E Activator 1 40 kDa subu 89.5 1.5 5E-05 47.1 10.8 45 387-445 8-52 (354)
268 2qby_B CDC6 homolog 3, cell di 89.4 0.55 1.9E-05 51.2 7.4 24 430-454 46-69 (384)
269 2j9r_A Thymidine kinase; TK1, 89.3 0.64 2.2E-05 45.6 6.9 37 23-68 31-67 (214)
270 1d2n_A N-ethylmaleimide-sensit 89.2 1.9 6.6E-05 44.2 11.1 19 21-39 65-83 (272)
271 2dr3_A UPF0273 protein PH0284; 89.2 1.8 6E-05 43.5 10.6 50 428-487 22-71 (247)
272 2qby_B CDC6 homolog 3, cell di 89.0 0.72 2.5E-05 50.2 8.0 19 20-38 45-63 (384)
273 2w0m_A SSO2452; RECA, SSPF, un 88.9 0.81 2.8E-05 45.6 7.7 21 19-39 22-42 (235)
274 2zan_A Vacuolar protein sortin 88.9 1.1 3.8E-05 49.8 9.5 18 429-446 167-184 (444)
275 2qz4_A Paraplegin; AAA+, SPG7, 88.8 2.1 7.3E-05 43.4 11.1 18 21-38 40-57 (262)
276 2q6t_A DNAB replication FORK h 88.8 3.4 0.00012 45.9 13.4 143 428-584 199-361 (444)
277 1w4r_A Thymidine kinase; type 88.8 1.3 4.3E-05 42.8 8.3 38 20-66 20-57 (195)
278 2r6a_A DNAB helicase, replicat 88.6 3.4 0.00012 46.1 13.3 143 428-584 202-362 (454)
279 2q6t_A DNAB replication FORK h 88.6 1.3 4.6E-05 49.2 9.9 143 20-176 200-362 (444)
280 2w0m_A SSO2452; RECA, SSPF, un 88.6 0.87 3E-05 45.4 7.7 19 428-446 22-40 (235)
281 3eie_A Vacuolar protein sortin 88.4 1.9 6.6E-05 45.5 10.6 18 21-38 52-69 (322)
282 4a1f_A DNAB helicase, replicat 88.2 0.49 1.7E-05 50.3 5.6 144 19-177 45-206 (338)
283 2orv_A Thymidine kinase; TP4A 88.2 1.1 3.7E-05 44.4 7.7 40 20-68 19-58 (234)
284 1njg_A DNA polymerase III subu 88.2 5.1 0.00017 39.6 13.3 39 133-175 126-164 (250)
285 2p65_A Hypothetical protein PF 88.0 1.5 5E-05 41.7 8.6 18 429-446 43-60 (187)
286 2chq_A Replication factor C sm 87.9 0.58 2E-05 49.4 6.1 43 388-445 12-54 (319)
287 4b4t_K 26S protease regulatory 87.8 3.3 0.00011 45.4 12.0 44 543-586 266-319 (428)
288 2dr3_A UPF0273 protein PH0284; 87.5 2.3 7.8E-05 42.7 10.1 50 19-78 22-71 (247)
289 1jr3_A DNA polymerase III subu 87.5 7.6 0.00026 41.6 15.0 39 541-583 118-156 (373)
290 2qby_A CDC6 homolog 1, cell di 87.2 2.6 8.8E-05 45.6 11.1 19 20-38 45-63 (386)
291 1sxj_B Activator 1 37 kDa subu 87.2 1.5 5.1E-05 46.2 8.8 38 542-583 107-144 (323)
292 3bh0_A DNAB-like replicative h 86.6 2.4 8.3E-05 44.6 9.9 144 19-176 67-230 (315)
293 1fnn_A CDC6P, cell division co 86.5 2.2 7.5E-05 46.3 10.0 17 22-38 46-62 (389)
294 1iqp_A RFCS; clamp loader, ext 86.1 5.5 0.00019 41.7 12.7 39 132-174 109-147 (327)
295 2cvh_A DNA repair and recombin 86.1 2.3 7.8E-05 41.8 9.0 21 428-448 19-39 (220)
296 1sxj_C Activator 1 40 kDa subu 86.0 5 0.00017 42.6 12.3 39 541-583 109-147 (340)
297 4b4t_H 26S protease regulatory 85.9 1.9 6.4E-05 47.5 8.7 53 389-445 205-259 (467)
298 2l8b_A Protein TRAI, DNA helic 85.7 1.6 5.4E-05 41.3 6.8 61 415-483 35-97 (189)
299 3u61_B DNA polymerase accessor 85.3 2.4 8.2E-05 44.8 9.3 40 132-174 104-143 (324)
300 3dm5_A SRP54, signal recogniti 85.3 11 0.00037 41.4 14.5 49 430-487 101-151 (443)
301 3vfd_A Spastin; ATPase, microt 85.1 3.6 0.00012 44.7 10.8 19 20-38 148-166 (389)
302 2qp9_X Vacuolar protein sortin 85.0 1.5 5.2E-05 47.1 7.6 17 430-446 85-101 (355)
303 1cr0_A DNA primase/helicase; R 85.0 1.4 4.8E-05 46.0 7.1 21 427-447 33-53 (296)
304 1w5s_A Origin recognition comp 84.9 3.6 0.00012 45.0 10.8 30 543-572 139-170 (412)
305 4b4t_J 26S protease regulatory 84.6 4.1 0.00014 44.1 10.5 45 135-179 243-297 (405)
306 3pfi_A Holliday junction ATP-d 84.4 4.3 0.00015 43.1 10.8 18 21-38 56-73 (338)
307 4b4t_I 26S protease regulatory 84.2 1.8 6.1E-05 47.2 7.4 53 389-445 178-232 (437)
308 4b4t_L 26S protease subunit RP 84.1 1.4 4.9E-05 48.4 6.8 54 389-446 177-232 (437)
309 2qp9_X Vacuolar protein sortin 83.9 2 6.7E-05 46.2 7.8 18 21-38 85-102 (355)
310 4a1f_A DNAB helicase, replicat 83.5 1.2 4.1E-05 47.3 5.7 49 428-486 45-93 (338)
311 3bh0_A DNAB-like replicative h 83.2 4.1 0.00014 42.8 9.8 52 427-488 66-117 (315)
312 1xp8_A RECA protein, recombina 83.2 3.9 0.00013 43.9 9.7 40 20-68 74-113 (366)
313 1sxj_D Activator 1 41 kDa subu 83.1 7 0.00024 41.5 11.9 22 17-38 53-76 (353)
314 2ehv_A Hypothetical protein PH 83.0 2.7 9.1E-05 42.3 8.0 45 541-588 134-183 (251)
315 3hu3_A Transitional endoplasmi 82.9 1.9 6.5E-05 48.5 7.4 45 544-588 299-350 (489)
316 3cmu_A Protein RECA, recombina 82.8 1.3 4.6E-05 57.7 6.7 43 20-71 1427-1469(2050)
317 3hu3_A Transitional endoplasmi 82.4 2.5 8.6E-05 47.5 8.1 45 135-179 299-350 (489)
318 3n70_A Transport activator; si 81.6 0.98 3.4E-05 41.4 3.7 22 17-38 21-42 (145)
319 1hqc_A RUVB; extended AAA-ATPa 81.5 6 0.0002 41.5 10.5 18 21-38 39-56 (324)
320 2cvh_A DNA repair and recombin 81.4 6.7 0.00023 38.3 10.2 23 19-41 19-41 (220)
321 3kl4_A SRP54, signal recogniti 81.2 8.5 0.00029 42.2 11.6 43 132-177 178-223 (433)
322 3co5_A Putative two-component 80.6 0.91 3.1E-05 41.5 3.1 21 16-36 23-43 (143)
323 1nlf_A Regulatory protein REPA 80.6 7.4 0.00025 39.9 10.5 24 18-41 28-51 (279)
324 3cmu_A Protein RECA, recombina 80.3 2.7 9.3E-05 54.8 8.2 41 429-478 1427-1467(2050)
325 2gno_A DNA polymerase III, gam 80.3 6.5 0.00022 41.0 9.9 39 541-583 81-119 (305)
326 1sxj_B Activator 1 37 kDa subu 80.0 3.3 0.00011 43.5 7.7 38 133-174 107-144 (323)
327 1cr0_A DNA primase/helicase; R 80.0 2.7 9.4E-05 43.7 7.0 23 17-39 32-54 (296)
328 3bgw_A DNAB-like replicative h 79.8 2.3 7.8E-05 47.2 6.5 142 20-176 197-359 (444)
329 2px0_A Flagellar biosynthesis 79.7 14 0.00047 38.3 12.2 20 428-447 104-123 (296)
330 2chq_A Replication factor C sm 79.2 4.5 0.00015 42.3 8.5 17 22-38 40-56 (319)
331 1w5s_A Origin recognition comp 79.1 6.4 0.00022 42.9 10.0 18 21-38 51-70 (412)
332 3e2i_A Thymidine kinase; Zn-bi 79.0 1.3 4.6E-05 43.2 3.8 40 20-68 28-67 (219)
333 3co5_A Putative two-component 79.0 1 3.5E-05 41.2 2.8 20 426-445 24-43 (143)
334 3n70_A Transport activator; si 78.8 1.2 4E-05 40.9 3.2 20 427-446 22-41 (145)
335 1n0w_A DNA repair protein RAD5 78.5 4.8 0.00017 40.1 8.1 23 428-450 23-45 (243)
336 2ehv_A Hypothetical protein PH 78.4 3.9 0.00013 41.0 7.4 41 132-174 134-179 (251)
337 2gno_A DNA polymerase III, gam 78.4 14 0.00047 38.5 11.7 39 132-174 81-119 (305)
338 3bgw_A DNAB-like replicative h 78.2 3.8 0.00013 45.4 7.7 38 428-474 196-233 (444)
339 1sxj_E Activator 1 40 kDa subu 78.1 11 0.00038 40.0 11.3 42 132-177 133-174 (354)
340 1nlf_A Regulatory protein REPA 78.1 12 0.00042 38.2 11.2 25 426-450 27-51 (279)
341 1sxj_C Activator 1 40 kDa subu 77.8 13 0.00044 39.4 11.6 39 132-174 109-147 (340)
342 3m6a_A ATP-dependent protease 77.5 1.9 6.6E-05 49.3 5.2 18 428-445 107-124 (543)
343 1jr3_A DNA polymerase III subu 77.4 23 0.00078 37.7 13.7 39 132-174 118-156 (373)
344 2ce7_A Cell division protein F 77.2 2 6.8E-05 48.0 5.0 46 543-588 109-164 (476)
345 2zts_A Putative uncharacterize 77.2 4.7 0.00016 40.4 7.6 52 428-488 29-80 (251)
346 3cmw_A Protein RECA, recombina 76.8 4.9 0.00017 51.8 8.9 90 20-147 1431-1523(1706)
347 3m6a_A ATP-dependent protease 76.6 3 0.0001 47.7 6.4 20 19-38 107-126 (543)
348 3io5_A Recombination and repai 76.3 4.7 0.00016 42.0 7.1 43 22-71 30-72 (333)
349 1e9r_A Conjugal transfer prote 75.8 2.4 8.1E-05 47.1 5.2 44 428-480 52-95 (437)
350 2z43_A DNA repair and recombin 75.3 4.2 0.00014 43.0 6.7 56 20-78 107-163 (324)
351 1n0w_A DNA repair protein RAD5 75.0 8.2 0.00028 38.3 8.7 23 19-41 23-45 (243)
352 3io5_A Recombination and repai 74.1 4.3 0.00015 42.3 6.1 42 431-479 30-71 (333)
353 3cf2_A TER ATPase, transitiona 73.9 15 0.0005 43.7 11.5 155 364-585 175-347 (806)
354 2z43_A DNA repair and recombin 73.9 8.4 0.00029 40.6 8.7 58 428-488 106-164 (324)
355 3hjh_A Transcription-repair-co 73.1 10 0.00035 42.3 9.4 65 657-736 382-446 (483)
356 2qgz_A Helicase loader, putati 72.1 5 0.00017 42.0 6.3 20 20-39 152-171 (308)
357 2i1q_A DNA repair and recombin 71.7 6.2 0.00021 41.5 7.0 23 20-42 98-120 (322)
358 3jvv_A Twitching mobility prot 71.5 6.5 0.00022 42.0 7.1 26 428-454 122-147 (356)
359 3nwn_A Kinesin-like protein KI 70.8 2.4 8.4E-05 45.2 3.5 25 422-446 96-122 (359)
360 3hr8_A Protein RECA; alpha and 70.3 4.1 0.00014 43.5 5.2 41 20-69 61-101 (356)
361 3pxi_A Negative regulator of g 69.9 7.9 0.00027 46.3 8.2 18 22-39 523-540 (758)
362 2w58_A DNAI, primosome compone 69.0 6.7 0.00023 37.8 6.1 18 21-38 55-72 (202)
363 1bg2_A Kinesin; motor protein, 68.9 2.9 0.0001 44.0 3.6 25 422-446 69-95 (325)
364 1f9v_A Kinesin-like protein KA 67.8 3.4 0.00012 43.9 3.9 26 421-446 75-102 (347)
365 3t0q_A AGR253WP; kinesin, alph 67.7 3.3 0.00011 44.1 3.7 26 421-446 76-103 (349)
366 3dc4_A Kinesin-like protein NO 67.5 3.1 0.0001 44.2 3.4 25 422-446 86-112 (344)
367 1q57_A DNA primase/helicase; d 67.3 9.5 0.00033 43.0 7.8 147 19-177 241-404 (503)
368 1e9r_A Conjugal transfer prote 67.3 5.2 0.00018 44.2 5.5 43 20-71 53-95 (437)
369 3b6u_A Kinesin-like protein KI 67.3 3.2 0.00011 44.5 3.5 25 422-446 93-119 (372)
370 2h58_A Kinesin-like protein KI 67.2 3.3 0.00011 43.6 3.6 26 421-446 71-98 (330)
371 3dm5_A SRP54, signal recogniti 67.2 48 0.0016 36.3 12.9 42 22-72 102-145 (443)
372 2vvg_A Kinesin-2; motor protei 67.1 3.3 0.00011 44.0 3.6 25 422-446 81-107 (350)
373 1v8k_A Kinesin-like protein KI 66.8 3.3 0.00011 44.9 3.5 25 422-446 146-172 (410)
374 1goj_A Kinesin, kinesin heavy 66.7 3.4 0.00012 44.1 3.6 25 422-446 72-98 (355)
375 2y65_A Kinesin, kinesin heavy 66.7 3.4 0.00012 44.2 3.6 25 422-446 76-102 (365)
376 1t5c_A CENP-E protein, centrom 66.7 3.4 0.00011 44.0 3.5 25 422-446 69-95 (349)
377 2nr8_A Kinesin-like protein KI 66.6 3.4 0.00012 44.1 3.5 26 421-446 94-121 (358)
378 3gbj_A KIF13B protein; kinesin 66.6 3.4 0.00011 44.1 3.5 26 421-446 83-110 (354)
379 2l8b_A Protein TRAI, DNA helic 66.5 12 0.00042 35.2 6.8 121 7-176 36-158 (189)
380 1x88_A Kinesin-like protein KI 66.4 3.2 0.00011 44.3 3.3 26 421-446 79-106 (359)
381 2zfi_A Kinesin-like protein KI 66.4 3.5 0.00012 44.2 3.6 25 422-446 81-107 (366)
382 3lre_A Kinesin-like protein KI 66.2 3.5 0.00012 44.0 3.6 25 422-446 97-123 (355)
383 4etp_A Kinesin-like protein KA 66.1 3.7 0.00013 44.7 3.8 25 422-446 132-158 (403)
384 3hr8_A Protein RECA; alpha and 65.4 4.4 0.00015 43.2 4.2 42 428-478 60-101 (356)
385 1ypw_A Transitional endoplasmi 65.2 26 0.0009 41.9 11.4 99 429-588 238-350 (806)
386 2wbe_C Bipolar kinesin KRP-130 65.1 3.5 0.00012 44.3 3.3 26 421-446 91-118 (373)
387 3bfn_A Kinesin-like protein KI 65.1 3.4 0.00012 44.5 3.2 24 423-446 91-116 (388)
388 2bjv_A PSP operon transcriptio 64.9 6.3 0.00021 40.1 5.2 18 428-445 28-45 (265)
389 4a14_A Kinesin, kinesin-like p 64.9 3.9 0.00014 43.4 3.6 25 422-446 75-101 (344)
390 3cob_A Kinesin heavy chain-lik 64.8 3.3 0.00011 44.4 3.0 25 422-446 71-97 (369)
391 1ls1_A Signal recognition part 64.8 66 0.0023 33.0 13.1 18 429-446 98-115 (295)
392 2rep_A Kinesin-like protein KI 64.4 4.2 0.00014 43.6 3.8 25 422-446 107-133 (376)
393 1qvr_A CLPB protein; coiled co 64.2 6.6 0.00023 47.7 6.0 17 430-446 192-208 (854)
394 2heh_A KIF2C protein; kinesin, 64.0 4 0.00014 43.9 3.5 25 422-446 126-152 (387)
395 1p9r_A General secretion pathw 63.9 9.8 0.00034 41.6 6.7 17 429-445 167-183 (418)
396 3u06_A Protein claret segregat 63.8 3.8 0.00013 44.6 3.3 26 421-446 129-156 (412)
397 2x8a_A Nuclear valosin-contain 63.6 1.8 6.1E-05 44.6 0.6 52 389-445 6-60 (274)
398 3hjh_A Transcription-repair-co 63.3 8 0.00027 43.2 5.9 52 428-491 13-64 (483)
399 2owm_A Nckin3-434, related to 63.3 4.3 0.00015 44.7 3.6 25 422-446 128-154 (443)
400 4ag6_A VIRB4 ATPase, type IV s 62.3 5.3 0.00018 43.4 4.3 42 428-478 34-75 (392)
401 3lda_A DNA repair protein RAD5 61.3 31 0.0011 37.3 10.0 45 428-475 177-221 (400)
402 3nwn_A Kinesin-like protein KI 61.3 4.9 0.00017 42.9 3.6 25 13-37 96-122 (359)
403 2oap_1 GSPE-2, type II secreti 61.2 6.3 0.00022 44.4 4.6 31 415-445 245-276 (511)
404 2bjv_A PSP operon transcriptio 60.9 6.2 0.00021 40.1 4.2 20 18-37 27-46 (265)
405 2oap_1 GSPE-2, type II secreti 60.7 6.8 0.00023 44.2 4.8 31 6-36 245-276 (511)
406 3b85_A Phosphate starvation-in 60.5 8.6 0.00029 37.5 4.9 32 414-445 7-38 (208)
407 1bg2_A Kinesin; motor protein, 59.9 5.7 0.0002 41.7 3.7 24 14-37 70-95 (325)
408 3b85_A Phosphate starvation-in 59.3 7.9 0.00027 37.8 4.4 35 3-37 5-39 (208)
409 2r44_A Uncharacterized protein 59.1 5 0.00017 42.4 3.2 24 15-38 41-64 (331)
410 3nbx_X ATPase RAVA; AAA+ ATPas 59.0 5.2 0.00018 44.9 3.4 25 13-37 34-58 (500)
411 3nbx_X ATPase RAVA; AAA+ ATPas 58.9 8.8 0.0003 43.1 5.3 30 416-445 28-57 (500)
412 3dc4_A Kinesin-like protein NO 58.8 5.9 0.0002 41.9 3.6 24 14-37 87-112 (344)
413 3b9p_A CG5977-PA, isoform A; A 58.1 11 0.00037 39.0 5.6 18 429-446 54-71 (297)
414 3t0q_A AGR253WP; kinesin, alph 57.8 6.8 0.00023 41.6 3.9 25 13-37 77-103 (349)
415 1jbk_A CLPB protein; beta barr 57.7 9.7 0.00033 35.8 4.8 18 21-38 44-61 (195)
416 1xwi_A SKD1 protein; VPS4B, AA 57.6 12 0.00041 39.4 5.8 17 430-446 46-62 (322)
417 1v8k_A Kinesin-like protein KI 57.4 6.5 0.00022 42.6 3.7 24 14-37 147-172 (410)
418 1f9v_A Kinesin-like protein KA 57.4 7.1 0.00024 41.5 3.9 25 13-37 76-102 (347)
419 2vvg_A Kinesin-2; motor protei 57.3 7 0.00024 41.5 3.9 23 15-37 83-107 (350)
420 2y65_A Kinesin, kinesin heavy 57.2 6.7 0.00023 41.9 3.7 24 14-37 77-102 (365)
421 2h58_A Kinesin-like protein KI 57.1 7.2 0.00025 41.1 3.9 25 13-37 72-98 (330)
422 1goj_A Kinesin, kinesin heavy 57.0 6.7 0.00023 41.8 3.7 23 15-37 74-98 (355)
423 4a14_A Kinesin, kinesin-like p 56.9 6.8 0.00023 41.5 3.7 24 14-37 76-101 (344)
424 2p65_A Hypothetical protein PF 56.9 7 0.00024 36.7 3.6 19 20-38 43-61 (187)
425 3b6u_A Kinesin-like protein KI 56.5 7 0.00024 41.8 3.7 23 15-37 95-119 (372)
426 3lre_A Kinesin-like protein KI 56.4 6.8 0.00023 41.7 3.6 24 14-37 98-123 (355)
427 2zfi_A Kinesin-like protein KI 56.2 7.5 0.00025 41.6 3.9 24 14-37 82-107 (366)
428 4etp_A Kinesin-like protein KA 56.2 7.7 0.00026 42.1 4.1 25 13-37 132-158 (403)
429 1t5c_A CENP-E protein, centrom 56.2 7.1 0.00024 41.4 3.7 24 14-37 70-95 (349)
430 2nr8_A Kinesin-like protein KI 56.2 7.1 0.00024 41.6 3.7 25 13-37 95-121 (358)
431 3gbj_A KIF13B protein; kinesin 56.2 7.1 0.00024 41.6 3.7 25 13-37 84-110 (354)
432 4ag6_A VIRB4 ATPase, type IV s 56.1 8.1 0.00028 41.9 4.3 41 19-68 34-74 (392)
433 3hws_A ATP-dependent CLP prote 55.6 11 0.00036 40.5 5.1 21 19-39 50-70 (363)
434 3cmw_A Protein RECA, recombina 55.5 20 0.00067 46.4 8.1 91 430-556 1432-1523(1706)
435 3lda_A DNA repair protein RAD5 55.3 37 0.0013 36.7 9.3 44 20-66 178-221 (400)
436 1lv7_A FTSH; alpha/beta domain 55.3 11 0.00039 37.9 5.0 17 430-446 46-62 (257)
437 2yhs_A FTSY, cell division pro 55.0 70 0.0024 35.5 11.5 55 542-596 375-433 (503)
438 1x88_A Kinesin-like protein KI 54.9 7.3 0.00025 41.6 3.5 24 14-37 81-106 (359)
439 1ojl_A Transcriptional regulat 54.4 7.1 0.00024 40.7 3.3 20 18-37 23-42 (304)
440 2zts_A Putative uncharacterize 54.4 7.6 0.00026 38.8 3.5 51 20-79 30-80 (251)
441 2heh_A KIF2C protein; kinesin, 54.2 8 0.00027 41.6 3.7 25 14-38 127-153 (387)
442 1hqc_A RUVB; extended AAA-ATPa 54.0 15 0.00051 38.3 5.9 16 430-445 39-54 (324)
443 3hws_A ATP-dependent CLP prote 53.8 13 0.00043 39.9 5.3 19 428-446 50-68 (363)
444 2wbe_C Bipolar kinesin KRP-130 53.7 8 0.00027 41.5 3.6 23 15-37 94-118 (373)
445 2gza_A Type IV secretion syste 53.6 7.7 0.00026 41.6 3.6 20 17-36 172-191 (361)
446 1kgd_A CASK, peripheral plasma 53.6 6.1 0.00021 37.5 2.5 19 19-37 4-22 (180)
447 2eyu_A Twitching motility prot 53.5 6.3 0.00022 40.0 2.7 20 426-445 22-41 (261)
448 1kgd_A CASK, peripheral plasma 53.4 6 0.0002 37.5 2.4 18 428-445 4-21 (180)
449 1jbk_A CLPB protein; beta barr 53.3 6 0.00021 37.4 2.4 25 429-454 43-67 (195)
450 3u06_A Protein claret segregat 53.2 8 0.00027 42.1 3.6 25 13-37 130-156 (412)
451 3cob_A Kinesin heavy chain-lik 53.0 7.3 0.00025 41.7 3.2 25 13-37 71-97 (369)
452 2gza_A Type IV secretion syste 52.9 6.3 0.00022 42.3 2.7 20 426-445 172-191 (361)
453 1sxj_A Activator 1 95 kDa subu 52.7 17 0.00059 41.0 6.5 42 542-586 148-189 (516)
454 3a8t_A Adenylate isopentenyltr 52.7 6.8 0.00023 41.3 2.8 18 21-38 41-58 (339)
455 2ffh_A Protein (FFH); SRP54, s 52.6 1.8E+02 0.0062 31.5 14.3 19 429-447 98-116 (425)
456 3bfn_A Kinesin-like protein KI 52.6 7.8 0.00027 41.7 3.3 22 16-37 93-116 (388)
457 1p9r_A General secretion pathw 52.5 11 0.00038 41.1 4.7 38 7-45 152-191 (418)
458 1ofh_A ATP-dependent HSL prote 52.5 13 0.00043 38.5 5.0 18 429-446 50-67 (310)
459 3exa_A TRNA delta(2)-isopenten 52.4 6.1 0.00021 41.1 2.3 15 431-445 5-19 (322)
460 2eyu_A Twitching motility prot 52.4 6.8 0.00023 39.8 2.7 21 17-37 22-42 (261)
461 2owm_A Nckin3-434, related to 52.3 9.2 0.00032 42.0 3.9 24 14-37 129-154 (443)
462 3foz_A TRNA delta(2)-isopenten 52.3 6.1 0.00021 41.0 2.3 14 432-445 13-26 (316)
463 3d8b_A Fidgetin-like protein 1 52.3 14 0.00048 39.4 5.4 18 429-446 117-134 (357)
464 1ojl_A Transcriptional regulat 52.1 7 0.00024 40.7 2.9 18 428-445 24-41 (304)
465 1u0j_A DNA replication protein 52.1 12 0.00041 37.9 4.4 32 7-38 85-122 (267)
466 3a8t_A Adenylate isopentenyltr 51.8 7.3 0.00025 41.0 2.9 16 430-445 41-56 (339)
467 2rep_A Kinesin-like protein KI 51.7 9.9 0.00034 40.8 3.9 25 13-37 107-133 (376)
468 2qmh_A HPR kinase/phosphorylas 51.5 7.1 0.00024 37.6 2.5 18 20-37 34-51 (205)
469 1ry6_A Internal kinesin; kines 51.4 8.4 0.00029 41.1 3.3 19 428-446 82-102 (360)
470 3foz_A TRNA delta(2)-isopenten 51.3 7.8 0.00027 40.2 3.0 17 22-38 12-28 (316)
471 2r44_A Uncharacterized protein 51.0 6.8 0.00023 41.4 2.6 22 424-445 41-62 (331)
472 1q57_A DNA primase/helicase; d 50.9 21 0.00071 40.2 6.8 51 427-486 240-290 (503)
473 3exa_A TRNA delta(2)-isopenten 50.6 7.6 0.00026 40.4 2.7 18 21-38 4-21 (322)
474 3iij_A Coilin-interacting nucl 50.5 7 0.00024 36.9 2.4 20 427-446 9-28 (180)
475 2r8r_A Sensor protein; KDPD, P 50.4 15 0.00051 36.2 4.7 23 431-453 8-30 (228)
476 3cf0_A Transitional endoplasmi 50.2 8.6 0.00029 40.0 3.2 20 19-38 48-67 (301)
477 2qmh_A HPR kinase/phosphorylas 50.2 8.1 0.00028 37.2 2.6 17 429-445 34-50 (205)
478 3iij_A Coilin-interacting nucl 50.0 6.9 0.00024 36.9 2.2 23 17-39 8-30 (180)
479 3uk6_A RUVB-like 2; hexameric 49.8 12 0.00041 40.0 4.4 18 429-446 70-87 (368)
480 2c9o_A RUVB-like 1; hexameric 49.6 12 0.00042 41.5 4.5 56 381-446 25-80 (456)
481 1lvg_A Guanylate kinase, GMP k 49.6 7.8 0.00027 37.4 2.5 20 19-38 3-22 (198)
482 2pt7_A CAG-ALFA; ATPase, prote 49.5 7.3 0.00025 41.2 2.5 19 427-445 169-187 (330)
483 2pt7_A CAG-ALFA; ATPase, prote 49.2 8.5 0.00029 40.7 2.9 20 17-36 168-187 (330)
484 3vaa_A Shikimate kinase, SK; s 48.9 7.9 0.00027 37.3 2.5 19 428-446 24-42 (199)
485 2ius_A DNA translocase FTSK; n 48.6 20 0.00067 40.2 5.9 28 428-455 166-193 (512)
486 1ofh_A ATP-dependent HSL prote 48.6 8.3 0.00028 40.0 2.8 19 20-38 50-68 (310)
487 3b9p_A CG5977-PA, isoform A; A 48.5 9.3 0.00032 39.5 3.2 19 20-38 54-72 (297)
488 2r62_A Cell division protease 48.0 9.7 0.00033 38.6 3.1 52 384-446 2-61 (268)
489 3trf_A Shikimate kinase, SK; a 47.9 8.6 0.00029 36.4 2.5 20 20-39 5-24 (185)
490 4b4t_M 26S protease regulatory 47.7 9.4 0.00032 41.8 3.1 17 21-37 216-232 (434)
491 3vaa_A Shikimate kinase, SK; s 47.7 11 0.00037 36.3 3.3 21 19-39 24-44 (199)
492 1lvg_A Guanylate kinase, GMP k 47.5 8.5 0.00029 37.1 2.4 18 428-445 3-20 (198)
493 2ze6_A Isopentenyl transferase 47.0 7.9 0.00027 39.1 2.2 14 432-445 4-17 (253)
494 3trf_A Shikimate kinase, SK; a 47.0 8.7 0.0003 36.3 2.4 18 429-446 5-22 (185)
495 1lv7_A FTSH; alpha/beta domain 46.9 8.6 0.00029 38.8 2.5 19 20-38 45-63 (257)
496 3uk6_A RUVB-like 2; hexameric 46.7 9.7 0.00033 40.7 3.0 19 21-39 71-89 (368)
497 3tau_A Guanylate kinase, GMP k 46.6 9 0.00031 37.3 2.5 19 428-446 7-25 (208)
498 3lw7_A Adenylate kinase relate 46.6 8.4 0.00029 35.8 2.2 15 432-446 4-18 (179)
499 1u94_A RECA protein, recombina 46.6 16 0.00056 38.9 4.7 39 428-475 62-100 (356)
500 1xwi_A SKD1 protein; VPS4B, AA 45.9 11 0.00037 39.7 3.2 18 21-38 46-63 (322)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-62 Score=628.75 Aligned_cols=383 Identities=16% Similarity=0.151 Sum_probs=281.2
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|++...+.+. ..+|+.++|+|.++++.++.+ +|++++||||||||++|.+|+++.+.. .++.++||++|+|
T Consensus 911 L~~~~~e~l~-~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~-------~~~~kavyi~P~r 982 (1724)
T 4f92_B 911 LRNSAFESLY-QDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPME 982 (1724)
T ss_dssp SCCHHHHTTT-TTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCH
T ss_pred ccCHHHHHHH-HhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChH
Confidence 3344555554 258999999999999999865 679999999999999999999999876 3466899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCc-ccccceEEEEecchhhh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEADRIL 555 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~-~~~~l~~lVlDEah~l~ 555 (930)
+||.|+++.|.+.+.......++.++|+.... .+...+++|+|||||+|..+++++... .+++++++|+||+|++.
T Consensus 983 aLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~---~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~ 1059 (1724)
T 4f92_B 983 ALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD---LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG 1059 (1724)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEECCSCHHHH---HHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhchhcCCEEEEEECCCCcc---hhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcC
Confidence 99999999998876654445677778875432 233456899999999998888775433 47899999999999887
Q ss_pred hcCcHHHHHHHHHHHh----hcCccceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEEE
Q psy15524 556 DQGYERDIAEFLEILK----KQKPQFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~----~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
+. .+..++.++..+. ...++.|++++|||+++ ..+++.+...++. ...+.. ...|..+..++.
T Consensus 1060 d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~----------~~RPvpL~~~i~ 1127 (1724)
T 4f92_B 1060 GE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHP----------NVRPVPLELHIQ 1127 (1724)
T ss_dssp ST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCG----------GGCSSCEEEEEE
T ss_pred CC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCC----------CCCCCCeEEEEE
Confidence 74 5666766666553 34568899999999986 4445544332221 111111 112344554444
Q ss_pred EcCchh---hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC------------------------
Q psy15524 631 VTPPKL---RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE------------------------ 683 (930)
Q Consensus 631 ~~~~~~---~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------------------ 683 (930)
..+... ++..+..-+...... ...++++||||+|+..++..+..|......
T Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d 1205 (1724)
T 4f92_B 1128 GFNISHTQTRLLSMAKPVYHAITK--HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSD 1205 (1724)
T ss_dssp EECCCSHHHHHHTTHHHHHHHHHH--HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCC
T ss_pred eccCCCchhhhhhhcchHHHHHHH--hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhccc
Confidence 333322 222111111111111 113679999999999998877655332100
Q ss_pred -------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEe----------cCCCChhhHHh
Q psy15524 684 -------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY----------TAPSSSTDYVH 746 (930)
Q Consensus 684 -------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~----------~~p~s~~~y~q 746 (930)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||.. ..|.++.+|+|
T Consensus 1206 ~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Q 1285 (1724)
T 4f92_B 1206 STLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQ 1285 (1724)
T ss_dssp HHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHH
T ss_pred HHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHH
Confidence 1235566999999999999999999999999999999999999999999942 24678999999
Q ss_pred hhcccccCCC--CceEEEEeCcccHHHHHHHHhcCCccchhchHHHHHhhhhhhccCcccc
Q psy15524 747 RVGRTARVGH--EGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSR 805 (930)
Q Consensus 747 r~GRagR~g~--~g~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 805 (930)
|+|||||.|. .|.|++++.+.+..+++++...+.++++.....+.+++++++..+....
T Consensus 1286 m~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~ 1346 (1724)
T 4f92_B 1286 MVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIEN 1346 (1724)
T ss_dssp HHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCB
T ss_pred hhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCC
Confidence 9999999998 6999999999999999999888888887666666677777776666543
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-56 Score=509.13 Aligned_cols=360 Identities=31% Similarity=0.494 Sum_probs=315.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.++|.+ +||..|||+|+++||.+++|+|++++||||||||++|++|+++.+...... ....++++
T Consensus 56 ~~f~~~-~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~~ 132 (434)
T 2db3_A 56 QHFTSA-DLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQV 132 (434)
T ss_dssp CCGGGS-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCSE
T ss_pred CChhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCccE
Confidence 579999 999999999985 899999999999999999999999999999999999999999998764321 22457899
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++|||+||.|+++.+.+++.... ..+..++||.....+...+..+++|+|+|||+|.+++.+ ....+++++++|+|
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlD 210 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESY-LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLD 210 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSS-CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEE
T ss_pred EEEecCHHHHHHHHHHHHHHhccCC-cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEc
Confidence 9999999999999999999886543 456778899988888888888999999999999999876 44668999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||+++++||...+..++..+.. .+.+|+++||||+++.+..++..++.++..+.+.... .....+.+.+
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~---------~~~~~i~~~~ 280 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTM-RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG---------GACSDVKQTI 280 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTS-CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT---------CCCTTEEEEE
T ss_pred cHhhhhccCcHHHHHHHHHhcCC-CCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc---------ccccccceEE
Confidence 99999999999999988877532 4578999999999999999999999999888765432 1234577888
Q ss_pred EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 630 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
..+....+...+...+... ..++||||++++.++.+++.|.+. ++.+..+||++++.+|..++++|++|
T Consensus 281 ~~~~~~~k~~~l~~~l~~~--------~~~~lVF~~t~~~a~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~~g 349 (434)
T 2db3_A 281 YEVNKYAKRSKLIEILSEQ--------ADGTIVFVETKRGADFLASFLSEK---EFPTTSIHGDRLQSQREQALRDFKNG 349 (434)
T ss_dssp EECCGGGHHHHHHHHHHHC--------CTTEEEECSSHHHHHHHHHHHHHT---TCCEEEESTTSCHHHHHHHHHHHHTS
T ss_pred EEeCcHHHHHHHHHHHHhC--------CCCEEEEEeCcHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 8888888888888887653 345999999999999999999875 78899999999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc-cHHHHHHH
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVKLVEEL 775 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-e~~~~~~l 775 (930)
+.+|||||++++||+|+|++++||+||+|.+..+|+||+|||||.|+.|.+++|+.++ +..+.+.+
T Consensus 350 ~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l 416 (434)
T 2db3_A 350 SMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL 416 (434)
T ss_dssp SCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHH
T ss_pred CCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999964 44344333
No 3
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.8e-54 Score=508.00 Aligned_cols=378 Identities=31% Similarity=0.522 Sum_probs=310.8
Q ss_pred CCCCC---CCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhh--cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCC
Q psy15524 391 SYEEF---PGIHPFMKKNLNEGMNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465 (930)
Q Consensus 391 ~f~~l---~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il--~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~ 465 (930)
+|+++ ..|++++.+++. .+||..|||+|.++|+.++ .++|++++||||||||++|++|+++.+..... ....
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~--~~~~ 94 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAIT-RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF--DSQY 94 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHH-TTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT--SSTT
T ss_pred CHHHHhhcCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc--cccC
Confidence 45554 249999999997 5899999999999999999 78899999999999999999999999876432 1234
Q ss_pred CeeEEEEccCHHHHHHHHHHHHHhhcc---CCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhccCCcccc
Q psy15524 466 GIYAVIILPTRELALQTLEIFTKLCKS---FTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFS 541 (930)
Q Consensus 466 ~~~~lil~PtreLa~Q~~~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~ 541 (930)
+.++|||+||++|+.|+++.+.+++.. ........+.||.....+...+. .+++|+|+|||+|.+++.+.....++
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 678999999999999999999998642 23345667788888777766664 47999999999999998765445678
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcC----ccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCcc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQK----PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTD 617 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~----~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~ 617 (930)
.+++||+||||+++++||...+..++..++... +.+|+++||||+++.+..++...+.++..+........
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~----- 249 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN----- 249 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-----
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcc-----
Confidence 899999999999999999999999998887543 37799999999999999999999998876654332111
Q ss_pred ceecCCCceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCH
Q psy15524 618 SLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696 (930)
Q Consensus 618 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~ 696 (930)
.......+.+.+..... ..+...+...+...... ...+.++||||+|++.++.+++.|...+..++.+..+||+|++
T Consensus 250 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~ 327 (579)
T 3sqw_A 250 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327 (579)
T ss_dssp SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCH
T ss_pred ccccccccceEEEEecchhhhHHHHHHHHHHHHhh--cCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCH
Confidence 11122345555555544 23333333333332211 1126799999999999999999999877778899999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
.+|..+++.|++|+.+|||||+++++|+|+|+|++||++++|.++..|+||+|||||.|+.|.|++|+.+.|..+++.+.
T Consensus 328 ~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 328 NKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hc
Q psy15524 777 NR 778 (930)
Q Consensus 777 ~~ 778 (930)
+.
T Consensus 408 ~~ 409 (579)
T 3sqw_A 408 DA 409 (579)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 4
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.4e-53 Score=505.51 Aligned_cols=438 Identities=29% Similarity=0.463 Sum_probs=337.1
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhh--cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il--~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.|++.+.+.+. .+||..|||+|.++|+.++ .++|++++||||||||++|++|+++.+...... ...+.++|||+|
T Consensus 78 ~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~P 154 (563)
T 3i5x_A 78 VLDKEIHKAIT-RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAP 154 (563)
T ss_dssp SSCHHHHHHHH-TTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECS
T ss_pred CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcC
Confidence 49999999997 5899999999999999999 678999999999999999999999998764321 234678999999
Q ss_pred CHHHHHHHHHHHHHhhcc---CCCcceEEEeCCCchHHHHHHH-hcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 475 TRELALQTLEIFTKLCKS---FTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||.|+++.++++... ........+.||.........+ ..+++|+|+|||+|.+++.+.....++++++||+||
T Consensus 155 tr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 234 (563)
T 3i5x_A 155 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 234 (563)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred cHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeC
Confidence 999999999999997543 2334466778888777766665 457999999999999998775445678899999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcC----ccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQK----PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~----~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
||+++++||...+..++..++... +.+|+++||||+++.+..++...+.++..+........ .......+.
T Consensus 235 ah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 309 (563)
T 3i5x_A 235 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN-----EPEAHERID 309 (563)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-----SCSSCTTEE
T ss_pred HHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCC-----CccccccCc
Confidence 999999999999999998886533 37899999999999999999999988766554322111 111223455
Q ss_pred EEEEEcCch-hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHH
Q psy15524 627 QHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKT 705 (930)
Q Consensus 627 ~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~ 705 (930)
+.+...... .+...+...+...... ...+.++||||+|++.++.+++.|.+.+..++.+..+||+|++.+|..+++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 310 QSVVISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred eEEEECchhHhhHHHHHHHHHHHHhh--cCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 566555442 3333333333332211 1126799999999999999999999877778899999999999999999999
Q ss_pred hhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccch
Q psy15524 706 FRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEE 784 (930)
Q Consensus 706 F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~ 784 (930)
|++|+.+|||||+++++|+|+|+|++||++|+|.++.+|+||+|||||.|+.|.|++|+.+.|..+++.+.+. +++++.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999754 444433
Q ss_pred hchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCC
Q psy15524 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIH 864 (930)
Q Consensus 785 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~ 864 (930)
..... . . ..+...+.+.+.++++....+.++|.+|.++|... |.+...+
T Consensus 468 ~~~~~-------------------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 516 (563)
T 3i5x_A 468 QEKYE-------------------P-S----EEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKE-------YRFSERR 516 (563)
T ss_dssp EEEEC-------------------C-C----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHTHHH-------HTCCHHH
T ss_pred ccccC-------------------c-c----HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-------hCCChHH
Confidence 21100 0 0 11222333444555554455555555555444322 3344443
Q ss_pred -hHHHHHhcCCC
Q psy15524 865 -LGHFAKSFALR 875 (930)
Q Consensus 865 -~~~~a~sf~l~ 875 (930)
+.++|++||+.
T Consensus 517 ~~~~~~~~~~~l 528 (563)
T 3i5x_A 517 ILPEIASTYGVL 528 (563)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 67889988863
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.6e-52 Score=473.69 Aligned_cols=366 Identities=31% Similarity=0.461 Sum_probs=311.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcc---------
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK--------- 460 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~--------- 460 (930)
.+|+++ ++++.+.++|.+ +||..|||+|.++||.++.|+|++++||||||||++|++|+++.+......
T Consensus 15 ~~f~~~-~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 15 ESFSDV-EMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp SSGGGS-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred CCHhhC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 469999 899999999975 899999999999999999999999999999999999999999988754211
Q ss_pred ---cCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCC
Q psy15524 461 ---ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 537 (930)
Q Consensus 461 ---~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~ 537 (930)
..+..++++||++||++|+.|+++.+.+++...+ ..+..+.||.....+...+..+++|+|+||++|.+++.. ..
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~ 170 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GK 170 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TS
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CC
Confidence 0122357899999999999999999999876543 456778888888888788888899999999999998876 44
Q ss_pred cccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc-CccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCc
Q psy15524 538 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ-KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTT 616 (930)
Q Consensus 538 ~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~-~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~ 616 (930)
+.+.+++++|+||||++++++|...+..++...... ....|++++|||+++.+..+....+.++..+......
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~------ 244 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG------ 244 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC---------
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC------
Confidence 668899999999999999999999888887643211 1267999999999999999999999988877654321
Q ss_pred cceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCH
Q psy15524 617 DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696 (930)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~ 696 (930)
..+..+.+.+..++...+...+...+.... .+.++||||++++.++.+++.|.+. ++.+..+||+|++
T Consensus 245 ---~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~ 312 (417)
T 2i4i_A 245 ---STSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHE---GYACTSIHGDRSQ 312 (417)
T ss_dssp ----CCSSEEEEEEECCGGGHHHHHHHHHHTCC------TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCH
T ss_pred ---CCccCceEEEEEeccHhHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHC---CCCeeEecCCCCH
Confidence 233567778888888888888888776531 2679999999999999999999875 7889999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHH
Q psy15524 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776 (930)
Q Consensus 697 ~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~ 776 (930)
.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.+++|+.+.+...++.+.
T Consensus 313 ~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~ 392 (417)
T 2i4i_A 313 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 392 (417)
T ss_dssp HHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887666654
Q ss_pred h
Q psy15524 777 N 777 (930)
Q Consensus 777 ~ 777 (930)
+
T Consensus 393 ~ 393 (417)
T 2i4i_A 393 D 393 (417)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.1e-51 Score=469.87 Aligned_cols=364 Identities=29% Similarity=0.525 Sum_probs=312.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|++++||||||||++|++|+++.+.. ...+.++
T Consensus 37 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 108 (410)
T 2j0s_A 37 PTFDTM-GLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQA 108 (410)
T ss_dssp CSGGGG-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCE
T ss_pred CCHhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCceE
Confidence 469999 899999999975 89999999999999999999999999999999999999999987643 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+.+++...+ ..+..+.||.....+...+..+++|+|+|||++.+++.+ ..+.+.+++++|+|
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViD 186 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLD 186 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEc
Confidence 9999999999999999999876544 456677888888888777888899999999999999876 45667889999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++.+++|...+..++..++ +..|++++|||+++.+..+....+.+|..+...... ..+..+.+.+
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 254 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLP---PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE---------LTLEGIKQFF 254 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSC---TTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG---------CSCTTEEEEE
T ss_pred cHHHHHhhhhHHHHHHHHHhCc---cCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc---------ccCCCceEEE
Confidence 9999999999888877765553 478999999999999988888888888877543221 1234566677
Q ss_pred EEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..+.... +...+...+.... ..++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 255 ~~~~~~~~k~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (410)
T 2j0s_A 255 VAVEREEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREA---NFTVSSMHGDMPQKERESIMKEFRS 324 (410)
T ss_dssp EEESSTTHHHHHHHHHHHHHT-------SSEEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred EEeCcHHhHHHHHHHHHHhcC-------CCcEEEEEcCHHHHHHHHHHHHhC---CCceEEeeCCCCHHHHHHHHHHHHC
Confidence 6665544 7777777665431 569999999999999999999875 7788889999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccchh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEI 785 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~~ 785 (930)
|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++|+.+.+...++.+.+. +..+++.
T Consensus 325 g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 325 GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 402 (410)
T ss_dssp TSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEEC
T ss_pred CCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999988888653 4444443
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.6e-50 Score=453.82 Aligned_cols=364 Identities=27% Similarity=0.504 Sum_probs=311.8
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
..+|+++ ++++.+.+.|.+ +||..|+|+|.++++.+++|+|+++.||||||||++|++|++..+.. ...+.+
T Consensus 20 ~~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~ 91 (400)
T 1s2m_A 20 GNTFEDF-YLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQ 91 (400)
T ss_dssp -CCGGGG-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCC
T ss_pred cCChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCcc
Confidence 3579999 899999999985 89999999999999999999999999999999999999999987643 234678
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+||++||++|+.|+++.+.+++...+ ..+....|+.....+...+..+++|+|+||+++.+++.+ ....+.+++++|+
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIi 169 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIM 169 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEE
Confidence 99999999999999999999886544 445667888877776666677899999999999988865 3456789999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++.+.+|...+..++..++ +..|++++|||++..+..+....+.+|..+..... .....+.+.
T Consensus 170 DEaH~~~~~~~~~~~~~i~~~~~---~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 236 (400)
T 1s2m_A 170 DEADKMLSRDFKTIIEQILSFLP---PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE----------LTLKGITQY 236 (400)
T ss_dssp ESHHHHSSHHHHHHHHHHHTTSC---SSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS----------CBCTTEEEE
T ss_pred eCchHhhhhchHHHHHHHHHhCC---cCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc----------cccCCceeE
Confidence 99999998888777777665543 47899999999999999998888888876654322 123456677
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+..+....+...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 237 ~~~~~~~~k~~~l~~~~~~~-------~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 237 YAFVEERQKLHCLNTLFSKL-------QINQAIIFCNSTNRVELLAKKITDL---GYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp EEECCGGGHHHHHHHHHHHS-------CCSEEEEECSSHHHHHHHHHHHHHH---TCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEechhhHHHHHHHHHhhc-------CCCcEEEEEecHHHHHHHHHHHHhc---CCCeEEecCCCCHHHHHHHHHHHhc
Confidence 77888888887777776542 2579999999999999999999886 7788899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccchh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEI 785 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~~ 785 (930)
|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|+.|.|++|+.+++...++.+.+. +.++++.
T Consensus 307 g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 384 (400)
T 1s2m_A 307 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 384 (400)
T ss_dssp TSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEEC
T ss_pred CCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999888888763 5555443
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5e-50 Score=456.87 Aligned_cols=359 Identities=25% Similarity=0.445 Sum_probs=302.7
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCC
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~ 463 (930)
+....+|+++ ++++.+.+.|.+ +||..|+|+|.++++.++.+ +|++++||||||||++|++|+++.+.. .
T Consensus 21 ~~~~~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~ 92 (412)
T 3fht_A 21 LYSVKSFEEL-RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------A 92 (412)
T ss_dssp TCCSSCTGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------T
T ss_pred ccccCCHhhC-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------c
Confidence 3445689999 999999999985 89999999999999999987 899999999999999999999988754 2
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccc
Q psy15524 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKV 543 (930)
Q Consensus 464 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l 543 (930)
..+.++||++||++|+.|+++.+.++...+.........|+....... ..+++|+|+||+++.+++.+...+.+.++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 346689999999999999999999998876666677777776543321 34679999999999999977667778999
Q ss_pred eEEEEecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecC
Q psy15524 544 EHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622 (930)
Q Consensus 544 ~~lVlDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 622 (930)
+++|+||||++++ .++...+..+...++ +..|++++|||+++.+..+....+.++..+...... ...
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 237 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLP---RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE---------ETL 237 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSC---TTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGG---------SSC
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCC---CCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccc---------ccc
Confidence 9999999999987 678777776665554 478999999999999999999999998887654332 123
Q ss_pred CCceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 623 DSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 623 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
..+.+.+..+.. ..+...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~ 307 (412)
T 3fht_A 238 DTIKQYYVLCSSRDEKFQALCNLYGAI-------TIAQAMIFCHTRKTASWLAAELSKE---GHQVALLSGEMMVEQRAA 307 (412)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHH-------SSSEEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHH
T ss_pred cCceEEEEEcCChHHHHHHHHHHHhhc-------CCCCEEEEeCCHHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHH
Confidence 456666666655 45566666555432 1579999999999999999999885 778888999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCC------CChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHH
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAP------SSSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEE 774 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~ 774 (930)
+++.|++|+.+|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++++.+.+ ..+++.
T Consensus 308 ~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 387 (412)
T 3fht_A 308 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 387 (412)
T ss_dssp HHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHH
T ss_pred HHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHH
Confidence 9999999999999999999999999999999999999 567899999999999999999999999765 667777
Q ss_pred HHh
Q psy15524 775 LQN 777 (930)
Q Consensus 775 l~~ 777 (930)
+++
T Consensus 388 i~~ 390 (412)
T 3fht_A 388 IQE 390 (412)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.1e-49 Score=450.64 Aligned_cols=368 Identities=25% Similarity=0.468 Sum_probs=311.4
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
..+|+++ ++++.+.+.|.+ +||..|+|+|.++++.++.|+|+++.||||+|||++|++|++..+.. ...+.+
T Consensus 7 ~~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~ 78 (391)
T 1xti_A 7 SSGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVS 78 (391)
T ss_dssp --CGGGG-CCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCC
T ss_pred CCChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCee
Confidence 3579999 999999999985 89999999999999999999999999999999999999999987643 234678
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
+||++||++|+.|+++.+.++....+...+..+.||.........+.. .++|+|+||+++.+++.. ....+.+++++|
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vV 157 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFI 157 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEE
Confidence 999999999999999999999877656677888888877766666654 479999999999998876 445688999999
Q ss_pred Eecchhhhhc-CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 548 LDEADRILDQ-GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 548 lDEah~l~~~-g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
+||||++.++ ++...+..++..+ +...|++++|||+++.+..+....+.+|..+....... .....+.
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 226 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMT---PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK--------LTLHGLQ 226 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTS---CSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCC--------CCCTTCE
T ss_pred EeCHHHHhhccchHHHHHHHHhhC---CCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccc--------cCcccce
Confidence 9999999874 6666666665444 34789999999999999999999999888776543321 1234567
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
+.+..+....+...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|
T Consensus 227 ~~~~~~~~~~~~~~l~~~l~~~-------~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f 296 (391)
T 1xti_A 227 QYYVKLKDNEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQ---NFPAIAIHRGMPQEERLSRYQQF 296 (391)
T ss_dssp EEEEECCGGGHHHHHHHHHHHS-------CCSEEEEECSCHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCchhHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHH
Confidence 7788888888888888777653 2679999999999999999999875 78888999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHHHHhc-CCccch
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEELQNR-RIRIEE 784 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~l~~~-~~~~~~ 784 (930)
++|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|+.|.+++|+.+.+ ..+++.+.+. ++++++
T Consensus 297 ~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (391)
T 1xti_A 297 KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 376 (391)
T ss_dssp HTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEE
T ss_pred hcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999864 4577777653 555554
Q ss_pred hc
Q psy15524 785 IK 786 (930)
Q Consensus 785 ~~ 786 (930)
.+
T Consensus 377 ~~ 378 (391)
T 1xti_A 377 LP 378 (391)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.5e-50 Score=455.24 Aligned_cols=363 Identities=27% Similarity=0.495 Sum_probs=294.6
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+++|.++++.++.|+|+++.||||||||++|++|+++.+.. ...+.++
T Consensus 40 ~~f~~~-~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 111 (414)
T 3eiq_A 40 DSFDDM-NLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQA 111 (414)
T ss_dssp CCGGGG-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCSCCE
T ss_pred cCHhhC-CCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCceeE
Confidence 568898 899999999985 89999999999999999999999999999999999999999988754 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
||++||++|+.|+++.+.+++...+ .......||.........+. .+++|+|+||++|.+++.+ ..+.+.++++||+
T Consensus 112 lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vVi 189 (414)
T 3eiq_A 112 LVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVL 189 (414)
T ss_dssp EEECSSHHHHHHHHHHHHHHGGGSC-CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEE
T ss_pred EEEeChHHHHHHHHHHHHHHhcccC-ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEE
Confidence 9999999999999999999886554 44566778877776666665 6789999999999998876 4566788999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++.+++|...+..++..++ +..|++++|||+++.+..+....+.++..+...... ..+..+.+.
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 257 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLN---SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE---------LTLEGIRQF 257 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSC---TTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC---------CCTTSCCEE
T ss_pred ECHHHhhccCcHHHHHHHHHhCC---CCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc---------cCCCCceEE
Confidence 99999999999888877765554 488999999999999999999999998877654332 123445666
Q ss_pred EEEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 629 FIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 629 ~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
+..+.... +...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|+
T Consensus 258 ~~~~~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~h~~~~~~~r~~~~~~f~ 327 (414)
T 3eiq_A 258 YINVEREEWKLDTLCDLYETL-------TITQAVIFINTRRKVDWLTEKMHAR---DFTVSAMHGDMDQKERDVIMREFR 327 (414)
T ss_dssp EEECSSSTTHHHHHHHHHHSS-------CCSSCEEECSCHHHHHHHHHHHHTT---TCCCEEC---CHHHHHHHHHHHHS
T ss_pred EEEeChHHhHHHHHHHHHHhC-------CCCcEEEEeCCHHHHHHHHHHHHhc---CCeEEEecCCCCHHHHHHHHHHHH
Confidence 66665544 666666666542 2569999999999999999999875 788889999999999999999999
Q ss_pred cCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccch
Q psy15524 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEE 784 (930)
Q Consensus 708 ~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~ 784 (930)
+|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|++|.|++|+.+.+...++.+.+. +..+++
T Consensus 328 ~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 328 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEE 405 (414)
T ss_dssp CC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEE
T ss_pred cCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888653 334433
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.4e-51 Score=478.15 Aligned_cols=359 Identities=25% Similarity=0.448 Sum_probs=175.5
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCC
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~ 463 (930)
.....+|+++ +|++.+.+.|.+ +||..|+|+|.+++|.++.+ +|++++||||||||++|++|+++.+.. .
T Consensus 88 ~~~~~~f~~~-~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~ 159 (479)
T 3fmp_B 88 LYSVKSFEEL-RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------A 159 (479)
T ss_dssp CCCCCCSGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------T
T ss_pred ccCcCCHHHc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------c
Confidence 3445679999 899999999985 89999999999999999987 899999999999999999999987653 2
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccc
Q psy15524 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKV 543 (930)
Q Consensus 464 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l 543 (930)
..++++|||+||++|+.|+++.+.++.............++....... ..+.+|+|+|||+|.+++.+...+.+.++
T Consensus 160 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 345689999999999999999999998776666667777765443221 34679999999999999987677788999
Q ss_pred eEEEEecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecC
Q psy15524 544 EHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622 (930)
Q Consensus 544 ~~lVlDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 622 (930)
++||+||||++++ .++...+..+...++ ..+|++++|||+++.+..++...+.+|..+....... ..
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~ 304 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLP---RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE---------TL 304 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTSC---TTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhCC---ccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc---------Cc
Confidence 9999999999987 577776666655543 4789999999999999999999999998887654321 22
Q ss_pred CCceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 623 DSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 623 ~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
..+.+.+..+.. ..+...+...+... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~lvF~~s~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~R~~ 374 (479)
T 3fmp_B 305 DTIKQYYVLCSSRDEKFQALCNLYGAI-------TIAQAMIFCHTRKTASWLAAELSKE---GHQVALLSGEMMVEQRAA 374 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhhc-------cCCceEEEeCcHHHHHHHHHHHHhC---CccEEEecCCCCHHHHHH
Confidence 345555555544 34444444443321 2579999999999999999999875 778888999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC------ChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHH
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS------SSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEE 774 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~ 774 (930)
+++.|++|+.+|||||+++++|+|+|++++||+||+|. +..+|+||+|||||.|+.|.+++|+.+.+ ..+++.
T Consensus 375 ~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~ 454 (479)
T 3fmp_B 375 VIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 454 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHH
Confidence 99999999999999999999999999999999999994 67899999999999999999999998765 567776
Q ss_pred HHh
Q psy15524 775 LQN 777 (930)
Q Consensus 775 l~~ 777 (930)
+.+
T Consensus 455 i~~ 457 (479)
T 3fmp_B 455 IQE 457 (479)
T ss_dssp ---
T ss_pred HHH
Confidence 654
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-48 Score=437.41 Aligned_cols=356 Identities=28% Similarity=0.488 Sum_probs=306.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
.+|+++ ++++.+.+.|.+ +||..|+|+|.++++.++++ +++++.+|||||||++|++|+++.+.. ..+.+
T Consensus 6 ~~f~~~-~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~ 76 (367)
T 1hv8_A 6 MNFNEL-NLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIE 76 (367)
T ss_dssp CCGGGS-SCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCC
T ss_pred Cchhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCc
Confidence 579999 899999999985 89999999999999999988 699999999999999999999987643 35778
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+||++||++|+.|+++.+.+++.... .....+.||.........+. +++|+|+||+++.+++.. ....+.+++++|+
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIi 153 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKN-LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFIL 153 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSC-CCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEE
Confidence 99999999999999999999886543 44566778877666555544 789999999999988876 4456789999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++.+++|...+..++..++ +..+++++|||+++....+....+.++..+.... ...+.+.
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 217 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACN---KDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-------------NANIEQS 217 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSC---SSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-------------SSSSEEE
T ss_pred eCchHhhhhchHHHHHHHHHhCC---CCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-------------CCCceEE
Confidence 99999999999887777765543 4789999999999998888888888776665432 2346677
Q ss_pred EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 629 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
+..+....+...+...+.. .+.++||||++.+.++.+++.|... ++.+..+||++++.+|..+++.|++
T Consensus 218 ~~~~~~~~~~~~l~~~l~~--------~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~ 286 (367)
T 1hv8_A 218 YVEVNENERFEALCRLLKN--------KEFYGLVFCKTKRDTKELASMLRDI---GFKAGAIHGDLSQSQREKVIRLFKQ 286 (367)
T ss_dssp EEECCGGGHHHHHHHHHCS--------TTCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECSSSCHHHHHHHHHHHHT
T ss_pred EEEeChHHHHHHHHHHHhc--------CCCcEEEEECCHHHHHHHHHHHHhc---CCCeEEeeCCCCHHHHHHHHHHHHc
Confidence 7788888888887777652 2679999999999999999999875 7788899999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc-CCccch
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEE 784 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~-~~~~~~ 784 (930)
|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|++|.+++++.++|...++.+.+. +..+++
T Consensus 287 ~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 287 KKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp TSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred CCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999988888663 444443
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.2e-48 Score=436.94 Aligned_cols=352 Identities=28% Similarity=0.475 Sum_probs=290.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+.. ...+.
T Consensus 5 ~~f~~~-~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~ 76 (395)
T 3pey_A 5 KSFDEL-GLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASP 76 (395)
T ss_dssp CSSTTS-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSC
T ss_pred cCHhhC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCc
Confidence 579999 999999999985 89999999999999999998 899999999999999999999987653 23567
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
++||++||++|+.|+++.+.+++.... .......|+...... ..+++|+|+||+++.+++.+ ....+.+++++|
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iI 150 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTK-ITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFV 150 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccC-eeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEEE
Confidence 899999999999999999999876544 344555555432221 24689999999999998876 455688999999
Q ss_pred Eecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 548 LDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 548 lDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
+||||++.+ .++...+..+...++ +..|++++|||+++.+..+....+.++..+...... .....+.
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 218 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLP---KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE---------VNVDAIK 218 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSC---TTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG---------CSCTTEE
T ss_pred EEChhhhcCccccHHHHHHHHHhCC---CCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc---------ccccccc
Confidence 999999988 677777776665554 478999999999999999999988888776553321 1224455
Q ss_pred EEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHH
Q psy15524 627 QHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKT 705 (930)
Q Consensus 627 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~ 705 (930)
+.+..+.. ..+...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.
T Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~ 288 (395)
T 3pey_A 219 QLYMDCKNEADKFDVLTELYGLM-------TIGSSIIFVATKKTANVLYGKLKSE---GHEVSILHGDLQTQERDRLIDD 288 (395)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTT-------TSSEEEEECSCHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHH
T ss_pred EEEEEcCchHHHHHHHHHHHHhc-------cCCCEEEEeCCHHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHH
Confidence 66666544 34544444444321 2679999999999999999999875 7788889999999999999999
Q ss_pred hhcCCCcEEEeccccccccCCCCccEEEEecCCC------ChhhHHhhhcccccCCCCceEEEEeCccc-HHHHHHHHh
Q psy15524 706 FRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS------SSTDYVHRVGRTARVGHEGSSLLFLIPSE-VKLVEELQN 777 (930)
Q Consensus 706 F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~------s~~~y~qr~GRagR~g~~g~~~~~~~~~e-~~~~~~l~~ 777 (930)
|++|+.+|||||+++++|+|+|++++||++|+|. ++.+|+||+||+||.|+.|.+++|+.+.+ ..+++.+++
T Consensus 289 f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~ 367 (395)
T 3pey_A 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQK 367 (395)
T ss_dssp HHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHH
T ss_pred HHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999999999999999998754 456666655
No 14
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.9e-49 Score=446.63 Aligned_cols=355 Identities=27% Similarity=0.491 Sum_probs=175.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.++.|+|+++.||||+|||++|++|+++.+.. ...+.++
T Consensus 21 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~ 92 (394)
T 1fuu_A 21 YKFDDM-ELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 92 (394)
T ss_dssp CSSGGG-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred CChhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCE
Confidence 469999 899999999985 89999999999999999999999999999999999999999987654 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+.++....+ ..+..+.|+.........+. +++|+|+||+++.+.+.+ ....+.+++++|+|
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 93 LMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILD 169 (394)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCC-eeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEE
Confidence 9999999999999999999876544 44566778877655544443 689999999999988876 44567889999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++.++++...+..++..++ +..|++++|||+++.+..+....+.+|..+....... .+..+.+.+
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 237 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLP---PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL---------TLEGIKQFY 237 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSC---TTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCC---CCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccc---------cCCCceEEE
Confidence 9999999999988888877664 4789999999999999999888888888776543221 112333444
Q ss_pred EEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc
Q psy15524 630 IVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS 708 (930)
Q Consensus 630 ~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~ 708 (930)
..+.... +...+...+... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~-------~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~ 307 (394)
T 1fuu_A 238 VNVEEEEYKYECLTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRND---KFTVSAIYSDLPQQERDTIMKEFRS 307 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcCchhhHHHHHHHHHhcC-------CCCcEEEEECCHHHHHHHHHHHHHc---CCeEEEeeCCCCHHHHHHHHHHHHC
Confidence 3333332 444444443321 2579999999999999999999874 7788889999999999999999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|++|.+++|+.+.+...++.+.+
T Consensus 308 ~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 308 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888887765
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.2e-46 Score=440.89 Aligned_cols=345 Identities=19% Similarity=0.280 Sum_probs=271.5
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.+.++ ++++.+.+.|.+.|||..|+|+|.++|+.++.|+|+++.||||+|||+||++|++.. +..+|
T Consensus 22 ~~~~~-~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~l 88 (591)
T 2v1x_A 22 NKEDF-PWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTL 88 (591)
T ss_dssp CCSCS-TTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEE
T ss_pred ccccC-CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEE
Confidence 34567 899999999998899999999999999999999999999999999999999999731 34799
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHH---H---hcCCcEEEECchhHH------HhhhccCCc
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKAR---I---RKGISILVATPGRLL------DHCKHTETL 538 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---~---~~~~~Ilv~Tp~rl~------~~l~~~~~~ 538 (930)
||+|+++|+.|+.+.+.++. +.+..+.|+......... + ..+.+|+|+||++|. +.+.. ..
T Consensus 89 VisP~~~L~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~ 161 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQLG-----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AY 161 (591)
T ss_dssp EECSCHHHHHHHHHHHHHHT-----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HH
T ss_pred EEeCHHHHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hh
Confidence 99999999999999998873 345667777655433222 2 356899999999874 22322 23
Q ss_pred ccccceEEEEecchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCC--EEEEccCCCCccc
Q psy15524 539 KFSKVEHLVLDEADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADSTDIHN 614 (930)
Q Consensus 539 ~~~~l~~lVlDEah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~--~~i~~~~~~~~~~ 614 (930)
.+.+++++||||||++.+|| |...+..+ ..+....+..+++++|||+++.+...+...+..+ ..+....
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l-~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~------ 234 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKAL-GILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF------ 234 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGG-GHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC------
T ss_pred hccCCcEEEEECcccccccccccHHHHHHH-HHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC------
Confidence 46789999999999999998 76665442 2222333578999999999998877666555533 3322110
Q ss_pred CccceecCCCceEEEEEcCc--hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecC
Q psy15524 615 TTDSLVIPDSLKQHFIVTPP--KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHG 692 (930)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg 692 (930)
....+...+...+. ..+...+..++.... .+.++||||+|++.++.+++.|... ++.+..+||
T Consensus 235 ------~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~------~~~~~IVf~~sr~~~e~la~~L~~~---g~~~~~~h~ 299 (591)
T 2v1x_A 235 ------NRPNLYYEVRQKPSNTEDFIEDIVKLINGRY------KGQSGIIYCFSQKDSEQVTVSLQNL---GIHAGAYHA 299 (591)
T ss_dssp ------CCTTEEEEEEECCSSHHHHHHHHHHHHTTTT------TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECT
T ss_pred ------CCcccEEEEEeCCCcHHHHHHHHHHHHHHhc------cCCCeEEEeCcHHHHHHHHHHHHHC---CCCEEEecC
Confidence 01122222222221 233444555543221 2679999999999999999999875 788999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHH
Q psy15524 693 SMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLV 772 (930)
Q Consensus 693 ~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~ 772 (930)
+|++.+|..+++.|++|+.+|||||+++++|+|+|+|++||++++|.+++.|+||+|||||.|.+|.|++|+.+.+...+
T Consensus 300 ~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 300 NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI 379 (591)
T ss_dssp TSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHh
Q psy15524 773 EELQN 777 (930)
Q Consensus 773 ~~l~~ 777 (930)
+.+..
T Consensus 380 ~~~~~ 384 (591)
T 2v1x_A 380 SSMVV 384 (591)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 77654
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.5e-46 Score=411.33 Aligned_cols=332 Identities=31% Similarity=0.518 Sum_probs=276.1
Q ss_pred CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH
Q psy15524 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477 (930)
Q Consensus 398 l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre 477 (930)
|++.+.+.|.+ +||..|+|+|.++++.+++++++++.+|||+|||++|++|+++. +.++||++||++
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHH
Confidence 57889999974 89999999999999999999999999999999999999998853 456999999999
Q ss_pred HHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhc
Q psy15524 478 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 557 (930)
Q Consensus 478 La~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~ 557 (930)
|+.|+++.+.+++...+ .....+.|+.........+. +++|+|+||++|.+++.. ....+.+++++|+||||++.++
T Consensus 68 L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhhcC-CcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhcc
Confidence 99999999999876544 34566778777666555444 599999999999988765 4456789999999999999999
Q ss_pred CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhh
Q psy15524 558 GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637 (930)
Q Consensus 558 g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (930)
++...+..++..++ ...+++++|||+++.........+.++..+.... ....+.+.+..+....+
T Consensus 145 ~~~~~~~~~~~~~~---~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 209 (337)
T 2z0m_A 145 GFIDDIKIILAQTS---NRKITGLFSATIPEEIRKVVKDFITNYEEIEACI------------GLANVEHKFVHVKDDWR 209 (337)
T ss_dssp TCHHHHHHHHHHCT---TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG------------GGGGEEEEEEECSSSSH
T ss_pred ccHHHHHHHHhhCC---cccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc------------ccCCceEEEEEeChHHH
Confidence 99888887776654 3778999999999999888888888877664321 12234455555555443
Q ss_pred HHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy15524 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717 (930)
Q Consensus 638 ~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T 717 (930)
.. ...+.. ..++++||||++.+.++.+++.|. .+..+||+|++.+|..++++|++|+.+|||||
T Consensus 210 ~~--~~~~~~-------~~~~~~lvf~~~~~~~~~l~~~l~-------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T 273 (337)
T 2z0m_A 210 SK--VQALRE-------NKDKGVIVFVRTRNRVAKLVRLFD-------NAIELRGDLPQSVRNRNIDAFREGEYDMLITT 273 (337)
T ss_dssp HH--HHHHHT-------CCCSSEEEECSCHHHHHHHHTTCT-------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HH--HHHHHh-------CCCCcEEEEEcCHHHHHHHHHHhh-------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 22 223322 126799999999999998887775 35678999999999999999999999999999
Q ss_pred cccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 718 DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 718 ~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+++++|+|+|++++||++++|.++.+|+||+||+||.|++|.+++|+. .|..+++.+++
T Consensus 274 ~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 274 DVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp HHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 78777777654
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.1e-46 Score=433.48 Aligned_cols=345 Identities=19% Similarity=0.302 Sum_probs=274.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+.|||..|+|+|.++|+.+++|+|+++.||||+|||+||++|++.. +..+
T Consensus 2 ~~fe~l-~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~ 68 (523)
T 1oyw_A 2 AQAEVL-NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLT 68 (523)
T ss_dssp CCCCCS-SHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEE
T ss_pred CChhhC-CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCE
Confidence 368999 899999999998899999999999999999999999999999999999999999832 2468
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH---HHH-hcCCcEEEECchhHHHhhhccCCcccccceE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARI-RKGISILVATPGRLLDHCKHTETLKFSKVEH 545 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~~-~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~ 545 (930)
|||+|+++|+.|+.+.+..+. +....+.|+....... ..+ ....+|+|+||++|...... ..+...++++
T Consensus 69 lvi~P~~aL~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~ 142 (523)
T 1oyw_A 69 VVVSPLISLMKDQVDQLQANG-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVL 142 (523)
T ss_dssp EEECSCHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEE
T ss_pred EEECChHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCE
Confidence 999999999999999998753 2445566665543322 222 34589999999999532111 1223478999
Q ss_pred EEEecchhhhhcC--cHHHHHHHHHHHhhcCccceEEEEccccCHHHHH-HHhh-hcCCCEEEEccCCCCcccCccceec
Q psy15524 546 LVLDEADRILDQG--YERDIAEFLEILKKQKPQFQSILLSATLTPAVQR-LAGM-TLQNPIQIDAADSTDIHNTTDSLVI 621 (930)
Q Consensus 546 lVlDEah~l~~~g--~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~-l~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 621 (930)
||+||||++.++| |...+..+...... .++.+++++|||+++.+.. +... .+.+|..+.....
T Consensus 143 vViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~------------ 209 (523)
T 1oyw_A 143 LAVDEAHCISQWGHDFRPEYAALGQLRQR-FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD------------ 209 (523)
T ss_dssp EEESSGGGGCTTSSCCCHHHHGGGGHHHH-CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC------------
T ss_pred EEEeCccccCcCCCccHHHHHHHHHHHHh-CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC------------
Confidence 9999999999998 66666555433333 3478999999999987654 3332 2345543322110
Q ss_pred CCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 622 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
... ..+...+...+...+..++... .+.++||||+|++.++.+++.|... ++.+..+||+|++++|..
T Consensus 210 r~~--l~~~v~~~~~~~~~l~~~l~~~-------~~~~~IVf~~sr~~~e~l~~~L~~~---g~~~~~~h~~l~~~~R~~ 277 (523)
T 1oyw_A 210 RPN--IRYMLMEKFKPLDQLMRYVQEQ-------RGKSGIIYCNSRAKVEDTAARLQSK---GISAAAYHAGLENNVRAD 277 (523)
T ss_dssp CTT--EEEEEEECSSHHHHHHHHHHHT-------TTCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHH
T ss_pred CCc--eEEEEEeCCCHHHHHHHHHHhc-------CCCcEEEEeCCHHHHHHHHHHHHHC---CCCEEEecCCCCHHHHHH
Confidence 011 2333444456666777777543 2679999999999999999999875 788999999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
+++.|++|+.+|||||+++++|+|+|+|++||++++|.+++.|+||+|||||.|.+|.|++|+.+.+...++.+...
T Consensus 278 ~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 278 VQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877654
No 18
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.9e-46 Score=433.51 Aligned_cols=338 Identities=19% Similarity=0.203 Sum_probs=254.8
Q ss_pred HhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 407 NEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 407 ~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.+.+|| .|||+|..++|.+++|+ |++|+||+|||++|.+|++..... |..++||+||++||.|+++.+
T Consensus 77 ~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 77 RRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHH
T ss_pred HHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHH
Confidence 345799 99999999999999999 999999999999999999854432 567999999999999999999
Q ss_pred HHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-hcC-
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG- 558 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~-~~g- 558 (930)
..++..++ +.+++++||.+.. .+....+++|+|+|||+| .+++... ..+.++.+.++|+||||+|+ |++
T Consensus 145 ~~l~~~lg-l~v~~i~gg~~~~--~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~ 221 (844)
T 1tf5_A 145 GKIFEFLG-LTVGLNLNSMSKD--EKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEAR 221 (844)
T ss_dssp HHHHHHTT-CCEEECCTTSCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTT
T ss_pred HHHHhhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccc
Confidence 99988765 5678889997653 334456799999999999 5555432 24567899999999999998 775
Q ss_pred --------------cHHHHHHHHHHHhhc------CccceEE-----------------EEccccCHH---HHHH--Hhh
Q psy15524 559 --------------YERDIAEFLEILKKQ------KPQFQSI-----------------LLSATLTPA---VQRL--AGM 596 (930)
Q Consensus 559 --------------~~~~l~~i~~~l~~~------~~~~q~v-----------------l~SAT~~~~---~~~l--~~~ 596 (930)
|...+..|+..++.. ...+|++ +||||.+.. +... +..
T Consensus 222 tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~ 301 (844)
T 1tf5_A 222 TPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHV 301 (844)
T ss_dssp CEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHH
T ss_pred cchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHH
Confidence 567777777776420 1367777 899998753 3322 222
Q ss_pred hcC-CCEEEE-------ccCCCC-----------------------cccC------------------------------
Q psy15524 597 TLQ-NPIQID-------AADSTD-----------------------IHNT------------------------------ 615 (930)
Q Consensus 597 ~~~-~~~~i~-------~~~~~~-----------------------~~~~------------------------------ 615 (930)
.+. +..++. +..... ....
T Consensus 302 l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~ 381 (844)
T 1tf5_A 302 AMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381 (844)
T ss_dssp TCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhH
Confidence 221 221111 100000 0000
Q ss_pred --------ccceecCCCce------EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhc
Q psy15524 616 --------TDSLVIPDSLK------QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL 681 (930)
Q Consensus 616 --------~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~ 681 (930)
.....+|.... +.++.+....|...+...+..... .+.++||||+|++.++.+++.|...
T Consensus 382 ~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~-----~~~pvLVft~s~~~se~Ls~~L~~~- 455 (844)
T 1tf5_A 382 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM-----TGQPVLVGTVAVETSELISKLLKNK- 455 (844)
T ss_dssp HHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH-----HTCCEEEEESCHHHHHHHHHHHHTT-
T ss_pred HHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHHHHHHHHHHHHC-
Confidence 00011221111 124456677788888887764321 1678999999999999999999875
Q ss_pred CCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCC--------CccEEEEecCCCChhhHHhhhccccc
Q psy15524 682 GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP--------LVDWIVQYTAPSSSTDYVHRVGRTAR 753 (930)
Q Consensus 682 ~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip--------~v~~VI~~~~p~s~~~y~qr~GRagR 753 (930)
|+.+..+||++.+.+|..+.++|+.| .|+||||+|+||+||+ ++.+||+|+.|.|.+.|+||+|||||
T Consensus 456 --gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGR 531 (844)
T 1tf5_A 456 --GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGR 531 (844)
T ss_dssp --TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSG
T ss_pred --CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCcccc
Confidence 88899999999999988777777766 5999999999999999 88899999999999999999999999
Q ss_pred CCCCceEEEEeCcccH
Q psy15524 754 VGHEGSSLLFLIPSEV 769 (930)
Q Consensus 754 ~g~~g~~~~~~~~~e~ 769 (930)
+|.+|.+++|++++|.
T Consensus 532 qG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 532 QGDPGITQFYLSMEDE 547 (844)
T ss_dssp GGCCEEEEEEEETTSS
T ss_pred CCCCCeEEEEecHHHH
Confidence 9999999999997663
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.6e-45 Score=415.45 Aligned_cols=327 Identities=20% Similarity=0.271 Sum_probs=255.7
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
+.+.+.+.+.+|| +|+|+|.++++.+++|+|++++||||||||++|++|++..+. .+.++||++||++|+
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHH
Confidence 3455666666788 799999999999999999999999999999999999887652 367899999999999
Q ss_pred HHHHHHHHHhhccCCCcceEEEeCCCch---HHHHHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 480 LQTLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 480 ~Q~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
.|+++.+.+++. ....+..++||... ..+...+..+ ++|+|+|||+|.+++.. +.+.+++++|+||||++.
T Consensus 78 ~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 78 KQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhh
Confidence 999999999876 34567788888876 4455666666 99999999999988864 556789999999998665
Q ss_pred h-----------cCcHHH-HHHHHHHHhh------c--CccceEEEEccc-cCHHHH-HHHhhhcCCCEEEEccCCCCcc
Q psy15524 556 D-----------QGYERD-IAEFLEILKK------Q--KPQFQSILLSAT-LTPAVQ-RLAGMTLQNPIQIDAADSTDIH 613 (930)
Q Consensus 556 ~-----------~g~~~~-l~~i~~~l~~------~--~~~~q~vl~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~ 613 (930)
+ +||... +..++..++. . .+..|++++||| .++.+. .+....+. +....
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~----- 223 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR----- 223 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC-----
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc-----
Confidence 4 777777 7888887751 1 147899999999 554433 22222221 11110
Q ss_pred cCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEE-EecC
Q psy15524 614 NTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF-KLHG 692 (930)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~-~lhg 692 (930)
....+..+.+.+..++ +...+..++... +.++||||++++.++.+++.|... ++.+. .+||
T Consensus 224 ----~~~~~~~i~~~~~~~~---~~~~l~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~h~ 285 (414)
T 3oiy_A 224 ----LVSVARNITHVRISSR---SKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRF---KFNVGETWSE 285 (414)
T ss_dssp ----CCCCCCSEEEEEESSC---CHHHHHHHHHHH--------CSSEEEEESSHHHHHHHHHHHHHT---TCCEEESSSC
T ss_pred ----cccccccchheeeccC---HHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHHc---CCceehhhcC
Confidence 1122345566665543 444555555542 579999999999999999999875 78887 8898
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEe----ccccccccCCCC-ccEEEEecCC--CChhhHHhhhcccccCC----CCceEE
Q psy15524 693 SMSQSERTEVFKTFRSVKSGVLIC----TDVAARGLDLPL-VDWIVQYTAP--SSSTDYVHRVGRTARVG----HEGSSL 761 (930)
Q Consensus 693 ~~~~~~R~~v~~~F~~~~~~vLv~----T~~~~~GlDip~-v~~VI~~~~p--~s~~~y~qr~GRagR~g----~~g~~~ 761 (930)
. +|. ++.|++|+.+|||| |+++++|+|+|+ |++||++|+| .+..+|+||+|||||.| +.|.++
T Consensus 286 ~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i 359 (414)
T 3oiy_A 286 F----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 359 (414)
T ss_dssp H----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEE
T ss_pred c----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEE
Confidence 5 444 99999999999999 999999999999 9999999999 99999999999999998 478999
Q ss_pred EEeCcccHHHHHHHH
Q psy15524 762 LFLIPSEVKLVEELQ 776 (930)
Q Consensus 762 ~~~~~~e~~~~~~l~ 776 (930)
+|+ .+..+++.++
T Consensus 360 ~~~--~~~~~~~~l~ 372 (414)
T 3oiy_A 360 IFE--EDEEIFESLK 372 (414)
T ss_dssp EEC--CCHHHHHHHH
T ss_pred EEE--ccHHHHHHHH
Confidence 888 5555555554
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-45 Score=427.39 Aligned_cols=346 Identities=24% Similarity=0.361 Sum_probs=244.0
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
++++.+.+.+.+ .|+..|+++|.++++.++++ +++++.||||||||++|++|+++.+.. ...+.++||++|
T Consensus 125 ~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~------~~~~~~vLvl~P 197 (508)
T 3fho_A 125 XXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA------SVPKPQAICLAP 197 (508)
T ss_dssp ---------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT------TCCSCCEEEECS
T ss_pred cccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh------CCCCceEEEEEC
Confidence 678888888874 79999999999999999998 899999999999999999999988754 234668999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhh
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI 554 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l 554 (930)
+++|+.|+++.+.+++...... .....++... .....+++|+|+||+++.+++.. ..+.+.++++||+||||++
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~ 271 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVK-TAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNM 271 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCC-EEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHH
T ss_pred cHHHHHHHHHHHHHhCCccCee-EEEEeCCccc----ccccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhh
Confidence 9999999999999987654422 2222333221 12234789999999999998876 4556889999999999999
Q ss_pred hh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcC
Q psy15524 555 LD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP 633 (930)
Q Consensus 555 ~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (930)
.+ .++...+..+...++. ..|++++|||+++.+..+......++..+....... .+..+.+.+....
T Consensus 272 ~~~~~~~~~~~~i~~~~~~---~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~ 339 (508)
T 3fho_A 272 LDQQGLGDQSMRIKHLLPR---NTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL---------SVEGIKQLYMDCQ 339 (508)
T ss_dssp TTC--CHHHHHHHHHHSCT---TCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-------------CCCCEEEEC-
T ss_pred cccCCcHHHHHHHHHhCCc---CCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC---------CcccceEEEEECC
Confidence 87 6788888777776653 789999999999999999999988887765543221 1233445555543
Q ss_pred -chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 634 -PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 634 -~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
...+...+...+... ..+++||||++++.++.+++.|.+. +..+..+||+|++.+|..+++.|++|+.+
T Consensus 340 ~~~~k~~~l~~ll~~~-------~~~~~LVF~~s~~~a~~l~~~L~~~---~~~v~~~hg~~~~~~R~~il~~f~~g~~~ 409 (508)
T 3fho_A 340 SEEHKYNVLVELYGLL-------TIGQSIIFCKKKDTAEEIARRMTAD---GHTVACLTGNLEGAQRDAIMDSFRVGTSK 409 (508)
T ss_dssp -CHHHHHHHHHHHC----------CCCEEEBCSSTTTTTHHHHHHTTT---TCCCCEEC-----CTTGGGTHHHHSSSCC
T ss_pred chHHHHHHHHHHHHhc-------CCCcEEEEECCHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHHCCCCe
Confidence 344555555544322 2679999999999999999999874 67788889999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecCC------CChhhHHhhhcccccCCCCceEEEEeCc-ccHHHHHHHHh
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTAP------SSSTDYVHRVGRTARVGHEGSSLLFLIP-SEVKLVEELQN 777 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~-~e~~~~~~l~~ 777 (930)
|||||+++++|+|+|++++||++|.| .++.+|+||+||+||.|++|.+++|+.+ .+...++.+++
T Consensus 410 VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~ 481 (508)
T 3fho_A 410 VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQE 481 (508)
T ss_dssp CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHH
T ss_pred EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHH
Confidence 99999999999999999999999999 8899999999999999999999999985 44455566554
No 21
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.2e-43 Score=407.40 Aligned_cols=342 Identities=17% Similarity=0.221 Sum_probs=259.8
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+.+|+ .|+++|..++|.+++|+ |++|+||+|||++|.+|++..... |..++||+||++||.|+
T Consensus 101 rEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qd 168 (922)
T 1nkt_A 101 REAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRD 168 (922)
T ss_dssp HHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHH
Confidence 3344456798 99999999999999998 999999999999999999865543 56799999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL- 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~- 555 (930)
++.+..++..++ +.+++++||.+.. .++...+++|+|+|||+| .++++.. ..+.++.+.++||||||+|+
T Consensus 169 ae~m~~l~~~lG-Lsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 169 SEWMGRVHRFLG-LQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp HHHHHHHHHHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred HHHHHHHHhhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 999999998765 5678888987643 344456799999999999 7777653 24567899999999999998
Q ss_pred hc---------------CcHHHHHHHHHHHhhc------CccceEE-----------------EEccccCHH---HHHHH
Q psy15524 556 DQ---------------GYERDIAEFLEILKKQ------KPQFQSI-----------------LLSATLTPA---VQRLA 594 (930)
Q Consensus 556 ~~---------------g~~~~l~~i~~~l~~~------~~~~q~v-----------------l~SAT~~~~---~~~l~ 594 (930)
|. +|...+..|+..++.. ...+|++ ++|||.+.. +....
T Consensus 246 DeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL 325 (922)
T 1nkt_A 246 DEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNAL 325 (922)
T ss_dssp TGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHH
T ss_pred hcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHH
Confidence 43 5778888888888621 1467888 999998753 32221
Q ss_pred --hhhcC-C-------CEEEEccCCCCc-----------------------ccC--------------------------
Q psy15524 595 --GMTLQ-N-------PIQIDAADSTDI-----------------------HNT-------------------------- 615 (930)
Q Consensus 595 --~~~~~-~-------~~~i~~~~~~~~-----------------------~~~-------------------------- 615 (930)
...+. + +..+.+...... ...
T Consensus 326 ~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa 405 (922)
T 1nkt_A 326 KAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTA 405 (922)
T ss_dssp HHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCC
T ss_pred HHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCc
Confidence 11221 2 111111110000 000
Q ss_pred ------------ccceecCCCc------eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHH
Q psy15524 616 ------------TDSLVIPDSL------KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELL 677 (930)
Q Consensus 616 ------------~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l 677 (930)
.+...+|... .+.++......|...+...+..... .+.++||||.|++.++.+++.|
T Consensus 406 ~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~-----~gqpvLVft~Sie~sE~Ls~~L 480 (922)
T 1nkt_A 406 QTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA-----KGQPVLIGTTSVERSEYLSRQF 480 (922)
T ss_dssp GGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHHHHHHHHHH
Confidence 0001112111 0123455667788888887764322 1679999999999999999999
Q ss_pred hhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCc----------------------------
Q psy15524 678 STVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV---------------------------- 729 (930)
Q Consensus 678 ~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v---------------------------- 729 (930)
.+. |+++..+||++.+.+|..+.++|+.| .|+||||+++||+||+.+
T Consensus 481 ~~~---Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (922)
T 1nkt_A 481 TKR---RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAA 555 (922)
T ss_dssp HHT---TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHH
T ss_pred HHC---CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHH
Confidence 985 88899999999888888888999888 499999999999999965
Q ss_pred ------------------------cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 730 ------------------------DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 730 ------------------------~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
.+||+++.|.|...|+||+|||||.|.+|.+..|++..|.
T Consensus 556 ~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 556 WHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998765
No 22
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=6.1e-44 Score=413.52 Aligned_cols=338 Identities=19% Similarity=0.188 Sum_probs=232.5
Q ss_pred HhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 407 NEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 407 ~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
...+|. .|+++|..++|.+++|+ +++|+||||||++|++|++..... |.+++||+||++||.|+++.+
T Consensus 68 ~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~ 135 (853)
T 2fsf_A 68 KRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENN 135 (853)
T ss_dssp HHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHH
T ss_pred HHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHH
Confidence 334575 89999999999999998 999999999999999999965432 567999999999999999999
Q ss_pred HHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccC-----CcccccceEEEEecchhhh-hcC-
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE-----TLKFSKVEHLVLDEADRIL-DQG- 558 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~-----~~~~~~l~~lVlDEah~l~-~~g- 558 (930)
..++..++ +.+++++||.+.. .+.+..+++|+|||||+| .++++..- ...++++.++|+||||+|+ +++
T Consensus 136 ~~l~~~lg-l~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 136 RPLFEFLG-LTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 99998765 5678889997653 344556799999999999 77776432 3567899999999999999 543
Q ss_pred --------------cHHHHHHHHHHHhhc-----------------CccceEE------------------------EEc
Q psy15524 559 --------------YERDIAEFLEILKKQ-----------------KPQFQSI------------------------LLS 583 (930)
Q Consensus 559 --------------~~~~l~~i~~~l~~~-----------------~~~~q~v------------------------l~S 583 (930)
|...+..|+..++.. ...+|++ ++|
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 567788888877631 1144543 899
Q ss_pred cccCHHHHHH---H--hhhcC--------CC-----------------------------EEEEccCCCCccc-C-----
Q psy15524 584 ATLTPAVQRL---A--GMTLQ--------NP-----------------------------IQIDAADSTDIHN-T----- 615 (930)
Q Consensus 584 AT~~~~~~~l---~--~~~~~--------~~-----------------------------~~i~~~~~~~~~~-~----- 615 (930)
||.+.....+ . ...+. ++ ..+.+........ .
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qny 372 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNY 372 (853)
T ss_dssp ----------------------------------------------------------------CCCCCEEEEEEEHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHH
Confidence 9976422211 0 11110 00 0111111000000 0
Q ss_pred --------------------------ccceecCCCc------eEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEE
Q psy15524 616 --------------------------TDSLVIPDSL------KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVF 663 (930)
Q Consensus 616 --------------------------~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF 663 (930)
.+...+|... .+.++.+....|..++...+..... .+.++|||
T Consensus 373 fr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~-----~gqpvLVf 447 (853)
T 2fsf_A 373 FRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTA-----KGQPVLVG 447 (853)
T ss_dssp HTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHT-----TTCCEEEE
T ss_pred HhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhc-----CCCCEEEE
Confidence 0001122111 1123556777888888887764321 26799999
Q ss_pred ecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCC---------------
Q psy15524 664 MATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL--------------- 728 (930)
Q Consensus 664 ~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~--------------- 728 (930)
|.|++.++.+++.|... |+++..+||++.+.+|..+.++|+.| .|+||||+|+||+||+.
T Consensus 448 t~sie~se~Ls~~L~~~---gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~ 522 (853)
T 2fsf_A 448 TISIEKSELVSNELTKA---GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPT 522 (853)
T ss_dssp ESSHHHHHHHHHHHHHT---TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCC
T ss_pred ECcHHHHHHHHHHHHHC---CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccch
Confidence 99999999999999985 88999999999999999999999988 49999999999999987
Q ss_pred -----------------c-----cEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 729 -----------------V-----DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 729 -----------------v-----~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
| .+||+++.|.|...|+||+|||||.|.+|.+.+|++..|.
T Consensus 523 ~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 523 AEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 3 6999999999999999999999999999999999998764
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-43 Score=434.41 Aligned_cols=355 Identities=17% Similarity=0.171 Sum_probs=260.2
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
.|..+ ++++.+...+.. .++..|+|+|.++|+.++.|+|++++||||||||++|++|++..+.. +.+++
T Consensus 163 ~~~~~-~l~~~~~~~~~~-~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvl 231 (1108)
T 3l9o_A 163 NYDYT-PIAEHKRVNEAR-TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVI 231 (1108)
T ss_dssp CCCSS-TTTTTCCCSCSS-CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEE
T ss_pred CcccC-CCChhhhHHHHH-hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEE
Confidence 45555 455544444443 34457999999999999999999999999999999999999998753 67899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||++|+.|+++.+.+++. .+++++|+... ..+++|+|+|||+|.+++.+. ...+.++++|||||
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDE 298 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEET
T ss_pred EEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhh
Confidence 999999999999999999875 35667887663 246899999999999988773 44588999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHH--HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA--VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||++.+++|+..+..++..++ +.+|+++||||+++. +..+......+|..+......... ......+......
T Consensus 299 aH~l~d~~rg~~~e~ii~~l~---~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p--l~~~~~~~~~~~~ 373 (1108)
T 3l9o_A 299 VHYMRDKERGVVWEETIILLP---DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP--LQHYLFPAHGDGI 373 (1108)
T ss_dssp GGGTTSHHHHHHHHHHHHHSC---TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC--EEEEEEETTSSCC
T ss_pred hhhccccchHHHHHHHHHhcC---CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc--ceEEEeecCCcce
Confidence 999999999999998888775 489999999999874 557777777666655443221110 0111111000000
Q ss_pred EEEcCchh----------------------------------------h---HHHHHHHHHhhccCCCcCCCceEEEEec
Q psy15524 629 FIVTPPKL----------------------------------------R---LVALASFILGKCQNVNEDEESKMLVFMA 665 (930)
Q Consensus 629 ~~~~~~~~----------------------------------------~---~~~l~~~l~~~~~~~~~~~~~k~iVF~~ 665 (930)
+..+.... + ...+..++..... ....++||||+
T Consensus 374 ~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~----~~~~~vIVF~~ 449 (1108)
T 3l9o_A 374 YLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK----KKYNPVIVFSF 449 (1108)
T ss_dssp EEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH----TTCCCEEEEES
T ss_pred eeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh----cCCCCEEEEeC
Confidence 10000000 0 1122222222111 12569999999
Q ss_pred chhhHHHHHHHHhhhcCC------------------------------------CceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 666 TQDMADYHTELLSTVLGE------------------------------------NIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 666 s~~~~~~~~~~l~~~~~~------------------------------------~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
+++.++.++..|...... ...+..+||+|++.+|..+++.|++|
T Consensus 450 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G 529 (1108)
T 3l9o_A 450 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 529 (1108)
T ss_dssp CHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC
Confidence 999999999887653100 01267789999999999999999999
Q ss_pred CCcEEEeccccccccCCCCccEEEEecC--------CCChhhHHhhhcccccCC--CCceEEEEeCcc-cHHHHHHHHhc
Q psy15524 710 KSGVLICTDVAARGLDLPLVDWIVQYTA--------PSSSTDYVHRVGRTARVG--HEGSSLLFLIPS-EVKLVEELQNR 778 (930)
Q Consensus 710 ~~~vLv~T~~~~~GlDip~v~~VI~~~~--------p~s~~~y~qr~GRagR~g--~~g~~~~~~~~~-e~~~~~~l~~~ 778 (930)
..+|||||+++++|||+|++++||+++. |.++.+|+||+|||||.| ..|.+++++.+. +...+..+...
T Consensus 530 ~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~ 609 (1108)
T 3l9o_A 530 FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 609 (1108)
T ss_dssp CCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHC
T ss_pred CCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcC
Confidence 9999999999999999999999997765 347778999999999999 578888888765 44566666554
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6e-42 Score=416.22 Aligned_cols=347 Identities=20% Similarity=0.236 Sum_probs=258.9
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
..+|+++ ++++.+.+.+.+ +||..|+|+|.++++. +.++++++++||||||||++|.+|+++.+.. .+.
T Consensus 7 ~~~~~~l-~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~ 76 (715)
T 2va8_A 7 WMPIEDL-KLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGG 76 (715)
T ss_dssp CCBGGGS-SSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCS
T ss_pred cCcHHHc-CCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCC
Confidence 3569999 899999999975 8999999999999999 7789999999999999999999999988764 256
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLV 547 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lV 547 (930)
+++|++|+++||.|+++.++.+. ..+ ..++.++|+...... ...+++|+|+|||+|..++.+ ....++++++||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~-~~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 150 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWE-LIG-FKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFV 150 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGG-GGT-CCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhh-cCC-CEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEE
Confidence 89999999999999999995443 333 456667777654332 124789999999999998876 334478999999
Q ss_pred EecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCcccee-cC-CCc
Q psy15524 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV-IP-DSL 625 (930)
Q Consensus 548 lDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~ 625 (930)
+||||.+.+.+++..+..++..++ +.|++++|||+++ ..+++.... .+. +........ ...... .+ ...
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~----~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~~~--l~~~~~~~~~~~~ 221 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK----RRNLLALSATISN-YKQIAKWLG-AEP-VATNWRPVP--LIEGVIYPERKKK 221 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH----TSEEEEEESCCTT-HHHHHHHHT-CEE-EECCCCSSC--EEEEEEEECSSTT
T ss_pred EechhhcCCcccchHHHHHHHhcc----cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCCCCCCCC--ceEEEEecCCccc
Confidence 999999998889999999888886 6899999999986 344444332 221 111100000 000000 00 000
Q ss_pred eEEEEEcC--------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC--------------
Q psy15524 626 KQHFIVTP--------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-------------- 683 (930)
Q Consensus 626 ~~~~~~~~--------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~-------------- 683 (930)
........ .......+...+. .++++||||++++.++.+++.|.+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 292 (715)
T 2va8_A 222 EYNVIFKDNTTKKVHGDDAIIAYTLDSLS---------KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQ 292 (715)
T ss_dssp EEEEEETTSCEEEEESSSHHHHHHHHHHT---------TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHH
T ss_pred ceeeecCcchhhhcccchHHHHHHHHHHh---------cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence 00111111 1222222222221 2689999999999999999988764321
Q ss_pred -------------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec----
Q psy15524 684 -------------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT---- 736 (930)
Q Consensus 684 -------------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~---- 736 (930)
...+..+||+|++++|..+++.|++|..+|||||+++++|+|+|++++||+ ||
T Consensus 293 ~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~ 372 (715)
T 2va8_A 293 LDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIA 372 (715)
T ss_dssp HHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------
T ss_pred HHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCC
Confidence 124777899999999999999999999999999999999999999999999 88
Q ss_pred ---CCCChhhHHhhhcccccCCC--CceEEEEeCcccH
Q psy15524 737 ---APSSSTDYVHRVGRTARVGH--EGSSLLFLIPSEV 769 (930)
Q Consensus 737 ---~p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~e~ 769 (930)
.|.+..+|.||+|||||.|. .|.|++++.+.+.
T Consensus 373 ~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 373 GYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp ------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred CCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 89999999999999999984 7999999887663
No 25
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.3e-42 Score=414.63 Aligned_cols=337 Identities=22% Similarity=0.247 Sum_probs=263.2
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHh-hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~-il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
+|+++ ++++.+.+.+.+ +||..|+|+|.++++. +.++++++++||||||||++|.+|+++.+... +.++
T Consensus 2 ~f~~l-~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~ 71 (720)
T 2zj8_A 2 RVDEL-RVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKA 71 (720)
T ss_dssp BGGGC-CSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEE
T ss_pred cHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEE
Confidence 58899 899999999985 8999999999999998 88999999999999999999999999888641 5789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
+|++|+++||.|+++.++++.. ++ ..++.++|+...... ...+++|+|+|||+|..++.+ ....++++++||+|
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEK-IG-LRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVAD 145 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGG-GT-CCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHHh-cC-CEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEE
Confidence 9999999999999999965443 33 456677776544322 134689999999999988876 33447899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (930)
|||++.+++++..+..++..++. ..|++++|||+++ ..++.... ..+. +..... |..+...+
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~---~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r------------p~~l~~~~ 207 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHMLG---KAQIIGLSATIGN-PEELAEWL-NAEL-IVSDWR------------PVKLRRGV 207 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHBT---TBEEEEEECCCSC-HHHHHHHT-TEEE-EECCCC------------SSEEEEEE
T ss_pred CCcccCCCcccHHHHHHHHHhhc---CCeEEEEcCCcCC-HHHHHHHh-CCcc-cCCCCC------------CCcceEEE
Confidence 99999998999999999998874 7899999999986 34444433 2111 111000 01111111
Q ss_pred ------EEcC-----chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC---------------
Q psy15524 630 ------IVTP-----PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE--------------- 683 (930)
Q Consensus 630 ------~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~--------------- 683 (930)
.... .......+...+. .++++||||++++.++.++..|.+....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 278 (720)
T 2zj8_A 208 FYQGFVTWEDGSIDRFSSWEELVYDAIR---------KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELAD 278 (720)
T ss_dssp EETTEEEETTSCEEECSSTTHHHHHHHH---------TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred EeCCeeeccccchhhhhHHHHHHHHHHh---------CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 1111 1222333333332 1689999999999999998888754211
Q ss_pred ---------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec----CCCC
Q psy15524 684 ---------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT----APSS 740 (930)
Q Consensus 684 ---------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~----~p~s 740 (930)
...+..+||+|++++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+
T Consensus 279 ~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s 358 (720)
T 2zj8_A 279 SLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIP 358 (720)
T ss_dssp TSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECC
T ss_pred HHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCC
Confidence 123777899999999999999999999999999999999999999999998 76 6899
Q ss_pred hhhHHhhhcccccCCC--CceEEEEeCcccHH
Q psy15524 741 STDYVHRVGRTARVGH--EGSSLLFLIPSEVK 770 (930)
Q Consensus 741 ~~~y~qr~GRagR~g~--~g~~~~~~~~~e~~ 770 (930)
..+|+||+|||||.|. .|.|++++.+.+..
T Consensus 359 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 359 IIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp HHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred HHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999999999984 78899999887744
No 26
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.3e-42 Score=427.93 Aligned_cols=328 Identities=19% Similarity=0.245 Sum_probs=256.1
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
..+.+...+|| .|||+|.++||.++.|+|++++||||||||++|++|++..+. .+.++|||+||++||.|
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~Q 136 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQ 136 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHHH
Confidence 34455556788 699999999999999999999999999999998888887762 37789999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCch---HHHHHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEecchh----
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR---- 553 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~---- 553 (930)
+++.+.++. ...+.+..++||... ..+...+..+ ++|+|+|||+|.+++.. +.++++++||+||||+
T Consensus 137 ~~~~l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~ 211 (1104)
T 4ddu_A 137 TLERLQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKA 211 (1104)
T ss_dssp HHHHHHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTS
T ss_pred HHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccc
Confidence 999999966 344567888998876 5666777766 99999999999988864 5678999999999965
Q ss_pred ------hhh-cCcHHH-HHHHHHHHhh------c--CccceEEEEccc-cCHHHH-HHHhhhcCCCEEEEccCCCCcccC
Q psy15524 554 ------ILD-QGYERD-IAEFLEILKK------Q--KPQFQSILLSAT-LTPAVQ-RLAGMTLQNPIQIDAADSTDIHNT 615 (930)
Q Consensus 554 ------l~~-~g~~~~-l~~i~~~l~~------~--~~~~q~vl~SAT-~~~~~~-~l~~~~~~~~~~i~~~~~~~~~~~ 615 (930)
+++ +||... +..++..++. . ....|+++|||| .|..+. .+....+. +.+..
T Consensus 212 ~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~------- 280 (1104)
T 4ddu_A 212 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR------- 280 (1104)
T ss_dssp SHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB-------
T ss_pred cccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc-------
Confidence 455 888887 8888888861 1 147899999999 454433 22222222 11111
Q ss_pred ccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEE-EecCCC
Q psy15524 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF-KLHGSM 694 (930)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~-~lhg~~ 694 (930)
....+..+.+.+..+ .+...+..++... ++++||||++++.++.+++.|... ++.+. .+||
T Consensus 281 --~~~~~~~i~~~~~~~---~k~~~L~~ll~~~--------~~~~LVF~~s~~~a~~l~~~L~~~---g~~~~~~lhg-- 342 (1104)
T 4ddu_A 281 --LVSVARNITHVRISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRF---KFNVGETWSE-- 342 (1104)
T ss_dssp --CCCCCCCEEEEEESC---CCHHHHHHHHHHH--------CSSEEEEESSSHHHHHHHHHHHHT---TCCEEESSSS--
T ss_pred --CCCCcCCceeEEEec---CHHHHHHHHHHhc--------CCCEEEEECcHHHHHHHHHHHHhC---CCCeeeEecC--
Confidence 112345566666655 3445555565542 579999999999999999999885 78887 8999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEe----ccccccccCCCC-ccEEEEecCCC------------------------------
Q psy15524 695 SQSERTEVFKTFRSVKSGVLIC----TDVAARGLDLPL-VDWIVQYTAPS------------------------------ 739 (930)
Q Consensus 695 ~~~~R~~v~~~F~~~~~~vLv~----T~~~~~GlDip~-v~~VI~~~~p~------------------------------ 739 (930)
+|.+ +++|++|+.+|||| |++++||+|+|+ |++||+||+|.
T Consensus 343 ---~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~ 418 (1104)
T 4ddu_A 343 ---FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQEN 418 (1104)
T ss_dssp ---HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCC
T ss_pred ---cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 2555 99999999999999 999999999999 99999999998
Q ss_pred ------------------------------------------ChhhHHhhhcccccCCCCc--eEEEEeCcccHHHHHHH
Q psy15524 740 ------------------------------------------SSTDYVHRVGRTARVGHEG--SSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 740 ------------------------------------------s~~~y~qr~GRagR~g~~g--~~~~~~~~~e~~~~~~l 775 (930)
+..+|+||+|||||.|..| .++.++..++...++.|
T Consensus 419 ~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l 498 (1104)
T 4ddu_A 419 PDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESL 498 (1104)
T ss_dssp CHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHH
Confidence 7889999999999976533 34555555777776666
Q ss_pred Hh
Q psy15524 776 QN 777 (930)
Q Consensus 776 ~~ 777 (930)
++
T Consensus 499 ~~ 500 (1104)
T 4ddu_A 499 KT 500 (1104)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.4e-42 Score=420.18 Aligned_cols=347 Identities=19% Similarity=0.231 Sum_probs=261.1
Q ss_pred CCCCCCC--CCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 391 SYEEFPG--IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 391 ~f~~l~~--l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
+|+++ + +++.+.+.+. .+||.+|+|+|.++++.++++++++++||||||||++|.+|+++.+.. +.+
T Consensus 2 ~f~~l-~~~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~ 70 (702)
T 2p6r_A 2 KVEEL-AESISSYAVGILK-EEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGK 70 (702)
T ss_dssp CSHHH-HHHHHHHHHHHHH-CC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCC
T ss_pred chhhh-hhccCHHHHHHHH-hCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCc
Confidence 57777 6 8999999997 489999999999999999999999999999999999999999988753 568
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++|++|+++||.|+++.++.+. .. ...++.++|+...... ...+++|+|+|||+|..++.+. ...++++++||+
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~-~~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIi 144 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWE-KI-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVV 144 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTT-TT-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHH-hc-CCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEE
Confidence 9999999999999999995443 33 3456677777654332 1247899999999999988873 344789999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 628 (930)
||||++.+++++..+..++..+....++.|++++|||+++ ..+++... ..+. +...... ........... ...
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r~---~~l~~~~~~~~-~~~ 217 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY-YVSDWRP---VPLVEGVLCEG-TLE 217 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-EECCCCS---SCEEEEEECSS-EEE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-ccCCCCC---ccceEEEeeCC-eee
Confidence 9999999999999999999888766678999999999986 45555433 3222 1111100 00000000000 001
Q ss_pred EEEcCc----h-hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC--------------------
Q psy15524 629 FIVTPP----K-LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-------------------- 683 (930)
Q Consensus 629 ~~~~~~----~-~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~-------------------- 683 (930)
+..... . .....+...+. .++++||||++++.++.++..|.+.+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECVA---------ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHHH---------TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred ccCcchhhhhhhhHHHHHHHHHh---------cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 111000 0 02233333322 2689999999999999998888754211
Q ss_pred -------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec---CCCChhhHHhhhc
Q psy15524 684 -------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT---APSSSTDYVHRVG 749 (930)
Q Consensus 684 -------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~---~p~s~~~y~qr~G 749 (930)
+..+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~G 368 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAG 368 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHT
T ss_pred HHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhh
Confidence 123556799999999999999999999999999999999999999999999 66 7899999999999
Q ss_pred ccccCCC--CceEEEEeCcccHH
Q psy15524 750 RTARVGH--EGSSLLFLIPSEVK 770 (930)
Q Consensus 750 RagR~g~--~g~~~~~~~~~e~~ 770 (930)
||||.|. .|.|++++.+.+..
T Consensus 369 RaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 369 RAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp TBSCTTTCSCEEEEEECCGGGHH
T ss_pred hcCCCCCCCCceEEEEecCccHH
Confidence 9999984 78999999888744
No 28
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.8e-42 Score=441.65 Aligned_cols=390 Identities=20% Similarity=0.264 Sum_probs=290.6
Q ss_pred CCCCCCHHHHHhHHhhhc-CCcEEEEccCCCchhHHhhHHHHHHHHhhCc--ccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 411 NITQVTTVQQLSIQPILD-GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP--KISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~-~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~--~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
||++++++|++++|.++. ++|++++||||||||++|.+|+++.+.+... .....++.++||++|+++||.|+++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 6789999999999999999999999976422 1223467899999999999999999999
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCC-cccccceEEEEecchhhhhcCcHHHHHHH
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-LKFSKVEHLVLDEADRILDQGYERDIAEF 566 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-~~~~~l~~lVlDEah~l~~~g~~~~l~~i 566 (930)
+.+...+ +.++.++|+...... ...+++|+|+|||+|..++++... ..++++++||+||+|.+.+ .++..++.+
T Consensus 156 ~~~~~~g-i~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYG-ITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTT-CCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCC-CEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 9887765 456778888754332 235689999999999777765432 2478999999999998866 567776666
Q ss_pred HHHH----hhcCccceEEEEccccCHHHHHHHhhhcCCCE-EEEccCCCCcccCccceecCCCceEEEEEcCchh---hH
Q psy15524 567 LEIL----KKQKPQFQSILLSATLTPAVQRLAGMTLQNPI-QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL---RL 638 (930)
Q Consensus 567 ~~~l----~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 638 (930)
+.++ ....+..|+|++|||+|+ ..+++++.-.++. .+.... ....|..+.+.+....... +.
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~---------~~~RPvpL~~~~~~~~~~~~~~~~ 300 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFD---------NSFRPVPLEQTYVGITEKKAIKRF 300 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECC---------GGGCSSCEEEECCEECCCCHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEEC---------CCCccCccEEEEeccCCcchhhhh
Confidence 6543 334568899999999986 4555554332210 000000 1123445666665444432 22
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC----------------------------------C
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE----------------------------------N 684 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~----------------------------------~ 684 (930)
..+...+........ .++++||||+|++.++..++.|.+.... .
T Consensus 301 ~~~~~~~~~~v~~~~--~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (1724)
T 4f92_B 301 QIMNEIVYEKIMEHA--GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLP 378 (1724)
T ss_dssp HHHHHHHHHHHTTCC--SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhh
Confidence 233333332222211 2578999999999998887776542100 1
Q ss_pred ceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE----ec------CCCChhhHHhhhcccccC
Q psy15524 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ----YT------APSSSTDYVHRVGRTARV 754 (930)
Q Consensus 685 ~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~----~~------~p~s~~~y~qr~GRagR~ 754 (930)
.++..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|.||+|||||.
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~ 458 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRP 458 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCT
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCC
Confidence 23556699999999999999999999999999999999999999999996 44 356899999999999999
Q ss_pred CC--CceEEEEeCcccHHHHHHHHhcCCccchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHH
Q psy15524 755 GH--EGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSF 822 (930)
Q Consensus 755 g~--~g~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (930)
|. .|.++++..+.+..++..+.....++++.....+.+.+++++..|.... .+++..|+...+
T Consensus 459 g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~-----~~~a~~~l~~T~ 523 (1724)
T 4f92_B 459 QYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQN-----AKDAVNWLGYAY 523 (1724)
T ss_dssp TTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCB-----HHHHHHHHHHSH
T ss_pred CCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCC-----HHHHHHHHhccH
Confidence 86 6999999999998888888888888888777778888888877776643 456666776554
No 29
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.1e-42 Score=406.72 Aligned_cols=345 Identities=17% Similarity=0.205 Sum_probs=200.3
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
++..+|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.+.++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999999999999999887521 123778999999999999999999999
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHH-HHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI-AEFLE 568 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l-~~i~~ 568 (930)
+...+ ..+..++|+.........+..+++|+|+||++|.+++.......+.++++||+||||++.+++....+ ..++.
T Consensus 79 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 79 FERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp HGGGT-CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred hcccC-ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHH
Confidence 87543 45666788876666566666789999999999999987743336889999999999999988753332 12221
Q ss_pred -HHhhcCccceEEEEccccCH-----------HHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc----
Q psy15524 569 -ILKKQKPQFQSILLSATLTP-----------AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT---- 632 (930)
Q Consensus 569 -~l~~~~~~~q~vl~SAT~~~-----------~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 632 (930)
.+....+..|++++|||++. .+..+.... . ...+........ .... ....... .+...
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~-~~~~~~~~~~~~-~~~~--~~~~~~~-~~~~~~~~~ 231 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-D-IQAISTVRENIQ-ELQR--FMNKPEI-DVRLVKRRI 231 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-T-CSEEECCCTTHH-HHHH--HTCCCCE-EEEECCCCS
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-C-CeEecchhcchH-HHHh--cCCCCce-EEEEcCCCc
Confidence 12222346899999999953 121221111 1 111111000000 0000 0000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 633 -------------------------------------------------------------------------------- 632 (930)
Q Consensus 633 -------------------------------------------------------------------------------- 632 (930)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (556)
T 4a2p_A 232 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 311 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------CchhhHHHHHHHHHhhccCCCcC
Q psy15524 633 ---------------------------------------------------------PPKLRLVALASFILGKCQNVNED 655 (930)
Q Consensus 633 ---------------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~ 655 (930)
....|...+...+...... .
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~---~ 388 (556)
T 4a2p_A 312 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY---N 388 (556)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH---C
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC---C
Confidence 0123444455555433211 2
Q ss_pred CCceEEEEecchhhHHHHHHHHhhhc---------CCCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccC
Q psy15524 656 EESKMLVFMATQDMADYHTELLSTVL---------GENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLD 725 (930)
Q Consensus 656 ~~~k~iVF~~s~~~~~~~~~~l~~~~---------~~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlD 725 (930)
.+.++||||++++.++.+++.|.+.. -.|.....+||+|++.+|..++++|++ |+.+|||||+++++|+|
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiD 468 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 468 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCC
Confidence 36899999999999999999997641 014455667899999999999999999 99999999999999999
Q ss_pred CCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 726 LPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 726 ip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
+|++++||+||+|.++..|+||+|| ||. ++|.+++|+.+.+..
T Consensus 469 ip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 469 IVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ----CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred chhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 9999999999999999999999999 998 789999999987654
No 30
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.8e-41 Score=400.35 Aligned_cols=346 Identities=16% Similarity=0.201 Sum_probs=228.9
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
+|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.+.+++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 699999999999999999999999999999999999999887631 1237789999999999999999999998754
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHHHHhh
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKK 572 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~~l~~ 572 (930)
+ ..+..++|+.........+..+++|+|+||++|.+++.......+.+++++|+||||++.+.+.. ..+...+.....
T Consensus 80 ~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 G-YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp T-CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred C-cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 3 45677888887666666666789999999999999987744336889999999999999887632 222222222111
Q ss_pred --cCccceEEEEccccCHH-----------HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc-------
Q psy15524 573 --QKPQFQSILLSATLTPA-----------VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT------- 632 (930)
Q Consensus 573 --~~~~~q~vl~SAT~~~~-----------~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 632 (930)
..+..|++++|||++.. +..+... +..+ .+........ ..... ..... ..+..+
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~~-~~~~~~~~~~-~l~~~--~~~~~-~~~~~~~~~~~~~ 232 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LDAS-VIATVRDNVA-ELEQV--VYKPQ-KISRKVASRTSNT 232 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TTCS-EEECCCSCHH-HHHTT--CCCCC-EEEEECCCCSCCH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cCCe-eeeccccCHH-HHHhh--cCCCc-eEEEEecCcccCh
Confidence 12467999999999542 1122111 1111 1111110000 00000 00000 000000
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 633 -------------------------------------------------------------------------------- 632 (930)
Q Consensus 633 -------------------------------------------------------------------------------- 632 (930)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (555)
T 3tbk_A 233 FKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYND 312 (555)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------CchhhHHHHHHHHHhhccCCCcCCC
Q psy15524 633 -------------------------------------------------------PPKLRLVALASFILGKCQNVNEDEE 657 (930)
Q Consensus 633 -------------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~~~~ 657 (930)
....|...+...+...... ...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~---~~~ 389 (555)
T 3tbk_A 313 ALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHL---KPE 389 (555)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH---CTT
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhcc---CCC
Confidence 0123444455555433221 126
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcC---------CCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccCCC
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLG---------ENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLDLP 727 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~---------~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip 727 (930)
.++||||++++.++.+++.|..... .|.....+||+|++.+|..++++|++ |+.+|||||+++++|+|+|
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp 469 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIA 469 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETT
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccc
Confidence 8999999999999999999987420 13445556789999999999999999 9999999999999999999
Q ss_pred CccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHH
Q psy15524 728 LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 728 ~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l 775 (930)
++++||+||+|.++..|+||+|| ||. +.|.+++|+.+.+......+
T Consensus 470 ~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 470 ECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999999999999999 998 89999999998877655444
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-40 Score=407.97 Aligned_cols=335 Identities=18% Similarity=0.202 Sum_probs=254.4
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.++|. |+|+|.++++.+..|++++++||||||||++|.+|++..+.. +.++||++||++|+.|+++.+.+
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHHH
Confidence 56775 999999999999999999999999999999999999987743 67899999999999999999999
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
.+. .++.++|+.... .+++|+|+|||+|.+++.+ ....++++++|||||||++.+++++..+..++.
T Consensus 152 ~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 152 EFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 875 356778876543 3589999999999988876 345678999999999999999999988888887
Q ss_pred HHhhcCccceEEEEccccCHHH--HHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCc------------
Q psy15524 569 ILKKQKPQFQSILLSATLTPAV--QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP------------ 634 (930)
Q Consensus 569 ~l~~~~~~~q~vl~SAT~~~~~--~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 634 (930)
.++ +..|++++|||+++.. ..+.......+..+........ .......+......+..+..
T Consensus 219 ~l~---~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 219 LLP---DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp HSC---TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSS--CEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred hcC---CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 775 4789999999998753 3454444455554433221110 00000010000000001110
Q ss_pred ----------------------------------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhh
Q psy15524 635 ----------------------------------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680 (930)
Q Consensus 635 ----------------------------------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~ 680 (930)
......+...+... ...++||||+++..++.++..|...
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-------~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-------KYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHH-------TCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-------CCCCEEEEECCHHHHHHHHHHHHhC
Confidence 11112222222211 1458999999999999998888652
Q ss_pred cCC------------------------------------CceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecccccccc
Q psy15524 681 LGE------------------------------------NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGL 724 (930)
Q Consensus 681 ~~~------------------------------------~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~Gl 724 (930)
... ...+..+||+|++.+|..+++.|++|..+|||||+++++|+
T Consensus 367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GI 446 (1010)
T 2xgj_A 367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 446 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGST
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccC
Confidence 100 01266789999999999999999999999999999999999
Q ss_pred CCCCccEEEE----ecC----CCChhhHHhhhcccccCCC--CceEEEEeCcc-cHHHHHHHHhc
Q psy15524 725 DLPLVDWIVQ----YTA----PSSSTDYVHRVGRTARVGH--EGSSLLFLIPS-EVKLVEELQNR 778 (930)
Q Consensus 725 Dip~v~~VI~----~~~----p~s~~~y~qr~GRagR~g~--~g~~~~~~~~~-e~~~~~~l~~~ 778 (930)
|+|++++||+ ||. |.++.+|+||+|||||.|. .|.+++++.+. +...+..+...
T Consensus 447 DiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 447 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp TCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred CCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhC
Confidence 9999999999 998 8899999999999999997 49999999876 66667776544
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-40 Score=408.29 Aligned_cols=346 Identities=16% Similarity=0.203 Sum_probs=208.1
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.+|+..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999887631 12377899999999999999999999
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHH-HHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD-IAEFL 567 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~-l~~i~ 567 (930)
++...+ ..+..++|+.........+..+++|+|+||++|.+++.......+.++++||+||||++.+.+.... +..++
T Consensus 319 ~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 319 HFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHGGGT-CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred hcccCC-ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 987543 4567788887666666667778999999999999998764333688999999999999987663222 22222
Q ss_pred HH-HhhcCccceEEEEccccCH-----------HHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc---
Q psy15524 568 EI-LKKQKPQFQSILLSATLTP-----------AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT--- 632 (930)
Q Consensus 568 ~~-l~~~~~~~q~vl~SAT~~~-----------~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 632 (930)
.. +....+..|++++|||++. .+..+.... . +..+........ ........|. ..+..+
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L-~-~~~i~~~~~~~~-~l~~~~~~~~---~~~~~~~~~ 471 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-D-IQAISTVRENIQ-ELQRFMNKPE---IDVRLVKRR 471 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-T-CSEEECCCTTHH-HHHHHSCCCC---CEEEECCCC
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhc-C-CcEEecccccHH-HHHHhcCCCc---eEEEecCCC
Confidence 21 1122456899999999952 222222211 1 111111000000 0000000000 000000
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 633 -------------------------------------------------------------------------------- 632 (930)
Q Consensus 633 -------------------------------------------------------------------------------- 632 (930)
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------------CchhhHHHHHHHHHhhccCCCc
Q psy15524 633 ----------------------------------------------------------PPKLRLVALASFILGKCQNVNE 654 (930)
Q Consensus 633 ----------------------------------------------------------~~~~~~~~l~~~l~~~~~~~~~ 654 (930)
....|...+...+......
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~--- 628 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY--- 628 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhcc---
Confidence 0122344444444432211
Q ss_pred CCCceEEEEecchhhHHHHHHHHhhhc---------CCCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEecccccccc
Q psy15524 655 DEESKMLVFMATQDMADYHTELLSTVL---------GENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGL 724 (930)
Q Consensus 655 ~~~~k~iVF~~s~~~~~~~~~~l~~~~---------~~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~Gl 724 (930)
..+.++||||++++.++.+++.|.... -.|.....+||+|++.+|..++++|++ |+.+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 236899999999999999999997631 024556677999999999999999999 9999999999999999
Q ss_pred CCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 725 DLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 725 Dip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
|+|+|++||+||+|.++..|+||+|| ||. ++|.+++|+++.+..
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999999999999 998 899999999987654
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.5e-41 Score=422.82 Aligned_cols=327 Identities=18% Similarity=0.268 Sum_probs=251.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
..+.+.+.+||. | |+|.++||.++.|+|++++||||||||+ |.+|++..+.. .+.++|||+||++||.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 345666679999 9 9999999999999999999999999998 99999988764 36789999999999999
Q ss_pred HHHHHHHhhccCCC---cceEEEeCCCchHHH---HHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 482 TLEIFTKLCKSFTW---IVPSWLTGGEKMKSE---KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 482 ~~~~~~~~~~~~~~---~~~~~~~gg~~~~~~---~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
+++.+++++...+. ..++.++||...... ...+.. ++|+|+|||+|.+++.+ +++++++|+||||+++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhh
Confidence 99999999876543 156778888876553 333444 99999999999998865 5689999999999999
Q ss_pred hcCcHHHHHHHHHHHhh--------cCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 556 DQGYERDIAEFLEILKK--------QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~--------~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
+ |+..+..++..+.- .....|++++|||+++. ..+....+.++..+.+... ......+.+
T Consensus 189 ~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~---------~~~~~~i~~ 256 (1054)
T 1gku_B 189 K--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS---------RITVRNVED 256 (1054)
T ss_dssp T--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC---------EECCCCEEE
T ss_pred h--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc---------ccCcCCceE
Confidence 8 45677777777641 12367899999999876 4333222222222221111 112234555
Q ss_pred EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhh
Q psy15524 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707 (930)
Q Consensus 628 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~ 707 (930)
.+. ...+...+..++... +.++||||++++.++.+++.|... +.+..+||+| ..+++.|+
T Consensus 257 ~~~---~~~k~~~L~~ll~~~--------~~~~LVF~~t~~~a~~l~~~L~~~----~~v~~lhg~~-----~~~l~~F~ 316 (1054)
T 1gku_B 257 VAV---NDESISTLSSILEKL--------GTGGIIYARTGEEAEEIYESLKNK----FRIGIVTATK-----KGDYEKFV 316 (1054)
T ss_dssp EEE---SCCCTTTTHHHHTTS--------CSCEEEEESSHHHHHHHHHTTTTS----SCEEECTTSS-----SHHHHHHH
T ss_pred EEe---chhHHHHHHHHHhhc--------CCCEEEEEcCHHHHHHHHHHHhhc----cCeeEEeccH-----HHHHHHHH
Confidence 554 244445555555432 568999999999999999998864 6788899998 37889999
Q ss_pred cCCCcEEEe----ccccccccCCCCc-cEEEEecCC--------------------------------------------
Q psy15524 708 SVKSGVLIC----TDVAARGLDLPLV-DWIVQYTAP-------------------------------------------- 738 (930)
Q Consensus 708 ~~~~~vLv~----T~~~~~GlDip~v-~~VI~~~~p-------------------------------------------- 738 (930)
+|+.+|||| |++++||+|+|+| ++||++|+|
T Consensus 317 ~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1054)
T 1gku_B 317 EGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEV 396 (1054)
T ss_dssp HTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHH
T ss_pred cCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999996 999999999
Q ss_pred ---------------------------CChhhHHhhhcccccCCCCc--eEEEEeCcccHHHHHHHHh
Q psy15524 739 ---------------------------SSSTDYVHRVGRTARVGHEG--SSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 739 ---------------------------~s~~~y~qr~GRagR~g~~g--~~~~~~~~~e~~~~~~l~~ 777 (930)
.|..+|+||+|||||.|..| .+++|+..++..+++.+.+
T Consensus 397 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~ 464 (1054)
T 1gku_B 397 REILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIE 464 (1054)
T ss_dssp HHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHH
Confidence 78999999999999988776 4888888888877766654
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7e-41 Score=407.19 Aligned_cols=357 Identities=17% Similarity=0.230 Sum_probs=219.2
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.+||..|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+.... ...+.++|||+||++|+.|+.+.+.+
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~----~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----TTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc----cCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999887521 12346899999999999999999999
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFL 567 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~ 567 (930)
++...+ ..+..++||.........+..+++|+|+|||+|.+++.......+.++++|||||||++.+.... ..+..++
T Consensus 84 ~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 84 YFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HTTTTT-CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HhccCC-ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 986433 45677788876655556666789999999999999987643336889999999999998865422 2222222
Q ss_pred HH-Hh-hcCccceEEEEccccC--------HHHHHHHhhh---------------------cCCCEEEEccCCCCcccCc
Q psy15524 568 EI-LK-KQKPQFQSILLSATLT--------PAVQRLAGMT---------------------LQNPIQIDAADSTDIHNTT 616 (930)
Q Consensus 568 ~~-l~-~~~~~~q~vl~SAT~~--------~~~~~l~~~~---------------------~~~~~~i~~~~~~~~~~~~ 616 (930)
.. +. ...+..+++++|||+. +....+.... ...|...............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 21 11 1134689999999997 1222222211 1112111000000000000
Q ss_pred -------------------c---ce---------------------------ecC-------------------------
Q psy15524 617 -------------------D---SL---------------------------VIP------------------------- 622 (930)
Q Consensus 617 -------------------~---~~---------------------------~~~------------------------- 622 (930)
. .. ..+
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence 0 00 000
Q ss_pred ----------------------------CCceEEEEE-------------c---CchhhHHHHHHHHHhhccCCCcCCCc
Q psy15524 623 ----------------------------DSLKQHFIV-------------T---PPKLRLVALASFILGKCQNVNEDEES 658 (930)
Q Consensus 623 ----------------------------~~~~~~~~~-------------~---~~~~~~~~l~~~l~~~~~~~~~~~~~ 658 (930)
..+.+.+.. . ....+...+..++...... ..+.
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~---~~~~ 399 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL---NPET 399 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTT---CTTC
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc---CCCC
Confidence 000000000 0 1234555666666544321 1267
Q ss_pred eEEEEecchhhHHHHHHHHhhhcC-CCceEEEe--------cCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccCCCC
Q psy15524 659 KMLVFMATQDMADYHTELLSTVLG-ENIAFFKL--------HGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLDLPL 728 (930)
Q Consensus 659 k~iVF~~s~~~~~~~~~~l~~~~~-~~~~~~~l--------hg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip~ 728 (930)
++||||++++.++.+++.|..... .++.+..+ ||+|++.+|..++++|++ |+.+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 999999999999999999987510 11566666 569999999999999998 99999999999999999999
Q ss_pred ccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHH
Q psy15524 729 VDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 729 v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l 775 (930)
+++||+||+|.++..|+||+|| ||. +.|.+++++.+.+....+.+
T Consensus 480 v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 480 CNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999 998 78999999988776544443
No 35
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.7e-41 Score=398.26 Aligned_cols=390 Identities=12% Similarity=0.114 Sum_probs=270.9
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
++++.+.+.+.+ ....++|+|+.++|.+++|+|++++||||||||++|++|+++.+.. .+.++||++|||
T Consensus 156 ~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~Ptr 225 (618)
T 2whx_A 156 TKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTR 225 (618)
T ss_dssp ------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSH
T ss_pred cchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChH
Confidence 445544444432 2478899999899999999999999999999999999999998865 367899999999
Q ss_pred HHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 477 eLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
+||.|+++.+... .... .++. .. .....+..+.++|.+.+...+... ..++++++||+||||++ +
T Consensus 226 eLa~Qi~~~l~~~-------~v~~-~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 226 VVAAEMEEALRGL-------PIRY-QTPA-VK---SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-D 290 (618)
T ss_dssp HHHHHHHHHTTTS-------CEEE-CCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-S
T ss_pred HHHHHHHHHhcCC-------ceeE-eccc-ce---eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-C
Confidence 9999999887521 1121 1111 00 000123456677777776655542 34789999999999998 7
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchh
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (930)
.+|...+..+...++. +++|+++||||+++.+..++. .++..+.+... .|. .
T Consensus 291 ~~~~~~~~~i~~~l~~--~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-----------~~~------------~ 342 (618)
T 2whx_A 291 PCSVAARGYISTRVEM--GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-----------IPE------------R 342 (618)
T ss_dssp HHHHHHHHHHHHHHHH--TSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-----------CCS------------S
T ss_pred ccHHHHHHHHHHHhcc--cCccEEEEECCCchhhhhhhc---cCCceeeeccc-----------CCH------------H
Confidence 7888888888888753 478999999999875443222 22322222111 000 0
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEe
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLIC 716 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~ 716 (930)
+...+...+... .+++||||+|++.++.+++.|.+. ++.+..+||+ +|.++++.|++|+.+||||
T Consensus 343 ~~~~ll~~l~~~--------~~~~LVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~----~R~~~l~~F~~g~~~VLVa 407 (618)
T 2whx_A 343 SWNTGFDWITDY--------QGKTVWFVPSIKAGNDIANCLRKS---GKRVIQLSRK----TFDTEYPKTKLTDWDFVVT 407 (618)
T ss_dssp CCSSSCHHHHHC--------CSCEEEECSSHHHHHHHHHHHHHT---TCCEEEECTT----THHHHTTHHHHSCCSEEEE
T ss_pred HHHHHHHHHHhC--------CCCEEEEECChhHHHHHHHHHHHc---CCcEEEEChH----HHHHHHHhhcCCCcEEEEE
Confidence 001112222221 569999999999999999999985 7888899984 6888999999999999999
Q ss_pred ccccccccCCCCccEE--------------------EEecCCCChhhHHhhhcccccCCC-CceEEEEeC---cccHHHH
Q psy15524 717 TDVAARGLDLPLVDWI--------------------VQYTAPSSSTDYVHRVGRTARVGH-EGSSLLFLI---PSEVKLV 772 (930)
Q Consensus 717 T~~~~~GlDip~v~~V--------------------I~~~~p~s~~~y~qr~GRagR~g~-~g~~~~~~~---~~e~~~~ 772 (930)
||++++|+|+| +++| |+++.|.+.++|+||+|||||.|. .|.+++|+. +.|..++
T Consensus 408 Tdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l 486 (618)
T 2whx_A 408 TDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHA 486 (618)
T ss_dssp CGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCH
T ss_pred CcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHH
Confidence 99999999998 8888 788889999999999999999965 899999998 7777777
Q ss_pred HHHHhcCCccchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhccc
Q psy15524 773 EELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSK 852 (930)
Q Consensus 773 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~ 852 (930)
+.++.. +.+++..+.. +....... .. +..+ ..+..+..+...+.++|.++++.|. .+
T Consensus 487 ~~le~~-i~l~~~~~~~-----------~~~~~~~~-~~-------~~~~-~~~~~~~~l~~~~~~~f~~ll~~~~-~~- 543 (618)
T 2whx_A 487 HWTEAK-MLLDNIYTPE-----------GIIPTLFG-PE-------REKT-QAIDGEFRLRGEQRKTFVELMRRGD-LP- 543 (618)
T ss_dssp HHHHHH-HHHTTCCCTT-----------CCCCCCCG-GG-------GGGC-CCCTTTTCCCHHHHHHHHHHHHTTC-CC-
T ss_pred HHHHhH-hccccccCCc-----------chhhhccc-hh-------hhcc-ccCCceeEccHHHHHHHHHHhhccC-Cc-
Confidence 776653 2222222111 00000000 00 0000 0012223345667889999998765 22
Q ss_pred ccccccccccCChHHHHHhcCCCCCCc
Q psy15524 853 DLRHIFNFKQIHLGHFAKSFALRDAPS 879 (930)
Q Consensus 853 ~~~~~f~~~~l~~~~~a~sf~l~~~p~ 879 (930)
.+..|++.+++++..+++|++..+|+
T Consensus 544 -~~l~~~v~~~~l~~~~~~w~~~~~~~ 569 (618)
T 2whx_A 544 -VWLSYKVASAGISYKDREWCFTGERN 569 (618)
T ss_dssp -HHHHHHHHHTTCCTTCCGGGTCCCGG
T ss_pred -HHHHHHHHhcCCCccceeEEecCCCc
Confidence 34448888999999999999999997
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.6e-39 Score=398.65 Aligned_cols=351 Identities=17% Similarity=0.200 Sum_probs=206.0
Q ss_pred CCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.|+..|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+.... ...+.++|||+||++|+.|+++.++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999998775421 123678999999999999999999998
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLE 568 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i~~ 568 (930)
+... .+.+..++|+.........+..+++|+|+||++|.+++.......+.++++||+||||++...+.. ..+..++.
T Consensus 320 ~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred hccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8654 345677888876555555566679999999999999988644336889999999999999876532 22222222
Q ss_pred H-HhhcCccceEEEEccccCH-----------HHHHHHhhh------------------cCCCEEEE-ccCCCCcccCc-
Q psy15524 569 I-LKKQKPQFQSILLSATLTP-----------AVQRLAGMT------------------LQNPIQID-AADSTDIHNTT- 616 (930)
Q Consensus 569 ~-l~~~~~~~q~vl~SAT~~~-----------~~~~l~~~~------------------~~~~~~i~-~~~~~~~~~~~- 616 (930)
. +....+..|++++|||+.. .+..+.... ...|.... ...........
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1112456899999999952 222222111 11111110 00000000000
Q ss_pred -------------cceecCCCceEE--EEE--------------------------------------------------
Q psy15524 617 -------------DSLVIPDSLKQH--FIV-------------------------------------------------- 631 (930)
Q Consensus 617 -------------~~~~~~~~~~~~--~~~-------------------------------------------------- 631 (930)
........+.+. ...
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000000000 000
Q ss_pred --------------------------------------------------cCchhhHHHHHHHHHhhccCCCcCCCceEE
Q psy15524 632 --------------------------------------------------TPPKLRLVALASFILGKCQNVNEDEESKML 661 (930)
Q Consensus 632 --------------------------------------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~k~i 661 (930)
.....|...+...+..... ...+.++|
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~---~~~~~rvL 635 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR---YNPQTRTL 635 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTT---SCTTCCEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhc---cCCCCeEE
Confidence 0012233334444443221 12368999
Q ss_pred EEecchhhHHHHHHHHhhhc---------CCCceEEEecCCCCHHHHHHHHHHhhc-CCCcEEEeccccccccCCCCccE
Q psy15524 662 VFMATQDMADYHTELLSTVL---------GENIAFFKLHGSMSQSERTEVFKTFRS-VKSGVLICTDVAARGLDLPLVDW 731 (930)
Q Consensus 662 VF~~s~~~~~~~~~~l~~~~---------~~~~~~~~lhg~~~~~~R~~v~~~F~~-~~~~vLv~T~~~~~GlDip~v~~ 731 (930)
|||+++++++.+++.|.... -.|.....+||+|++.+|..++++|++ |+.+|||||+++++|||+|+|++
T Consensus 636 IF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~ 715 (936)
T 4a2w_A 636 LFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNL 715 (936)
T ss_dssp EEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSE
T ss_pred EEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCE
Confidence 99999999999999998741 014455667999999999999999999 99999999999999999999999
Q ss_pred EEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 732 IVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 732 VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
||+||+|.++..|+||+|| ||. +.|.+++++.+.+..
T Consensus 716 VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 716 VVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp EEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred EEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999999 998 789999999876553
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-39 Score=387.86 Aligned_cols=330 Identities=21% Similarity=0.308 Sum_probs=240.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHhHHhhhcC------CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 401 FMKKNLNEGMNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 401 ~~~~~l~~~~~~~~~~~iQ~~~i~~il~~------~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.+.+.+.+.++| .||++|.++++.++.+ .|++++||||||||++|++|++..+.. |.+++|++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaP 425 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECS
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeC
Confidence 345555557899 9999999999999875 589999999999999999999998764 678999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH---HHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 475 treLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||.|+++.+.+++...+ +.+..++|+...... ...+..+ ++|+|+||+.+.+ ...+.+++++|+||
T Consensus 426 tr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 426 TSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDE 498 (780)
T ss_dssp CHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEES
T ss_pred cHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecc
Confidence 99999999999999987554 456778888765442 3334444 9999999998854 24578899999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEE
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFI 630 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (930)
+|++.... ...+.......++++||||+.+....+......+...+...... ...+..
T Consensus 499 aHr~g~~q--------r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~-----------r~~i~~--- 556 (780)
T 1gm5_A 499 QHRFGVKQ--------REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG-----------RKEVQT--- 556 (780)
T ss_dssp CCCC-------------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS-----------CCCCEE---
T ss_pred cchhhHHH--------HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC-----------CcceEE---
Confidence 99863221 11122233468999999998775544333221122222111000 011111
Q ss_pred EcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchh--------hHHHHHHHHhh-hcCCCceEEEecCCCCHHHHHH
Q psy15524 631 VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD--------MADYHTELLST-VLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 631 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~--------~~~~~~~~l~~-~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
......+...+...+..... .+.+++|||++++ .++.+++.|.+ .+ .++.+..+||+|++.+|..
T Consensus 557 ~~~~~~~~~~l~~~i~~~l~-----~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~-~~~~v~~lHG~m~~~eR~~ 630 (780)
T 1gm5_A 557 MLVPMDRVNEVYEFVRQEVM-----RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF-PEFKLGLMHGRLSQEEKDR 630 (780)
T ss_dssp CCCCSSTHHHHHHHHHHHTT-----TSCCBCCBCCCC--------CHHHHHHHSGGGSCC----CBCCCCSSSCCSCSHH
T ss_pred EEeccchHHHHHHHHHHHHh-----cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc-CCCcEEEEeCCCCHHHHHH
Confidence 11122334445555554432 2678999999764 45667777766 33 2577888999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCC-ChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHH
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS-SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l 775 (930)
++++|++|+.+|||||+++++|+|+|++++||++++|. +...|.||+||+||.|+.|.|++++.+.+....+++
T Consensus 631 v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 631 VMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp HHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred HHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 99999999999999999999999999999999999996 788999999999999999999999985444433333
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.5e-38 Score=391.95 Aligned_cols=336 Identities=19% Similarity=0.217 Sum_probs=243.5
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.++|+ |+|+|.++|+.+++|+|+++.||||||||++|++|+...+.. +.++||++||++|+.|+++.+.+
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHHHHT
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 46774 899999999999999999999999999999999999876543 67899999999999999999998
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
.+. ...++.++|+.... ...+|+|+|||+|.+++.. ....+.++++||+||||++.+++++..+..++.
T Consensus 105 ~~~---~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 105 TFD---DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp TC-----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred HcC---CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 753 34567778876533 3579999999999988876 344578999999999999999999988888887
Q ss_pred HHhhcCccceEEEEccccCHHH--HHHHhhhcCCCEEEEccCCCCcccCccceec-------------------------
Q psy15524 569 ILKKQKPQFQSILLSATLTPAV--QRLAGMTLQNPIQIDAADSTDIHNTTDSLVI------------------------- 621 (930)
Q Consensus 569 ~l~~~~~~~q~vl~SAT~~~~~--~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------- 621 (930)
.++ +..|++++|||+++.. .++.......+..+........ .......
T Consensus 174 ~l~---~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~--pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (997)
T 4a4z_A 174 MLP---QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPV--PLEINIWAKKELIPVINQNSEFLEANFRKHKE 248 (997)
T ss_dssp HSC---TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSS--CEEEEEEETTEEEEEECTTCCBCHHHHHHHHH
T ss_pred hcc---cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCc--cceEEEecCCcchhcccchhhhhHHHHHHHHH
Confidence 775 3789999999998653 3333332222222211111000 0000000
Q ss_pred -----------------------------------------------------------CCCceEEEEEcCchhhHHHHH
Q psy15524 622 -----------------------------------------------------------PDSLKQHFIVTPPKLRLVALA 642 (930)
Q Consensus 622 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~l~ 642 (930)
+......+...+...+...+.
T Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 328 (997)
T 4a4z_A 249 ILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIV 328 (997)
T ss_dssp HHC-----------------------------------------------------------------CCCCTTHHHHHH
T ss_pred HhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 000000111223334455555
Q ss_pred HHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCC------------------------------------Cce
Q psy15524 643 SFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE------------------------------------NIA 686 (930)
Q Consensus 643 ~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~------------------------------------~~~ 686 (930)
..+... ...++||||++++.++.++..|...... ...
T Consensus 329 ~~l~~~-------~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 401 (997)
T 4a4z_A 329 NYLRKR-------ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG 401 (997)
T ss_dssp HHHHHT-------TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHhC-------CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcC
Confidence 555432 2579999999999999999888652100 114
Q ss_pred EEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEE--------EecCCCChhhHHhhhcccccCCC--
Q psy15524 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV--------QYTAPSSSTDYVHRVGRTARVGH-- 756 (930)
Q Consensus 687 ~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI--------~~~~p~s~~~y~qr~GRagR~g~-- 756 (930)
+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++.+|+ +++.|.++.+|+||+|||||.|.
T Consensus 402 i~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 66779999999999999999999999999999999999999966555 23344499999999999999994
Q ss_pred CceEEEEeC--cccHHHHHHHHh
Q psy15524 757 EGSSLLFLI--PSEVKLVEELQN 777 (930)
Q Consensus 757 ~g~~~~~~~--~~e~~~~~~l~~ 777 (930)
.|.+++++. +.+...++.+..
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~i~ 504 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEVTM 504 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHHhc
Confidence 566666663 345556666643
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.6e-40 Score=376.54 Aligned_cols=372 Identities=13% Similarity=0.111 Sum_probs=255.4
Q ss_pred CCCCCCHHHHHhHHhhhcCCcE-EEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 411 NITQVTTVQQLSIQPILDGGDV-LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 411 ~~~~~~~iQ~~~i~~il~~~d~-lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
|+.+++|+|+ +||.+++++|+ +++||||||||++|++|++..+.. .+.++||++|||+||.|+++.+...
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 6789999985 89999999886 999999999999999999987764 3678999999999999999987422
Q ss_pred hccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHH
Q psy15524 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~ 569 (930)
......+.... ....+..|.++|+|.+..++.+. ..+.++++||+||||++ +.++...+..+...
T Consensus 72 -------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 72 -------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp -------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred -------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 11111111111 11235679999999998887653 45789999999999977 44444433333322
Q ss_pred HhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhc
Q psy15524 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKC 649 (930)
Q Consensus 570 l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 649 (930)
. ..++.|+++||||+++.+..+ ...++..+..... .|.. .+ ..+...+...
T Consensus 137 ~--~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~-----------~p~~---~~---------~~~~~~l~~~- 187 (451)
T 2jlq_A 137 V--EMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE-----------IPER---SW---------NTGFDWITDY- 187 (451)
T ss_dssp H--HTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC-----------CCSS---CC---------SSSCHHHHHC-
T ss_pred h--cCCCceEEEEccCCCccchhh---hcCCCceEecCcc-----------CCch---hh---------HHHHHHHHhC-
Confidence 2 234789999999998743321 2233333322110 1100 00 0011222221
Q ss_pred cCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCc
Q psy15524 650 QNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV 729 (930)
Q Consensus 650 ~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v 729 (930)
.+++||||++++.++.+++.|.+. ++.+..+||++ +..+++.|++|+.+|||||+++++|+|+|+
T Consensus 188 -------~~~~lVF~~s~~~a~~l~~~L~~~---g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~- 252 (451)
T 2jlq_A 188 -------QGKTVWFVPSIKAGNDIANCLRKS---GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA- 252 (451)
T ss_dssp -------CSCEEEECSSHHHHHHHHHHHHTT---TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-
T ss_pred -------CCCEEEEcCCHHHHHHHHHHHHHc---CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-
Confidence 569999999999999999999875 78888999976 357999999999999999999999999999
Q ss_pred cEEEEec--------------------CCCChhhHHhhhcccccCCC-CceEEEEeCcccH--HHH-----HHHHhcCCc
Q psy15524 730 DWIVQYT--------------------APSSSTDYVHRVGRTARVGH-EGSSLLFLIPSEV--KLV-----EELQNRRIR 781 (930)
Q Consensus 730 ~~VI~~~--------------------~p~s~~~y~qr~GRagR~g~-~g~~~~~~~~~e~--~~~-----~~l~~~~~~ 781 (930)
++||++| .|.+..+|+||+|||||.|. .|.+++|....+. ..+ ..+...++.
T Consensus 253 ~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 332 (451)
T 2jlq_A 253 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIY 332 (451)
T ss_dssp SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCC
T ss_pred CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCC
Confidence 9999998 99999999999999999998 8888887653321 111 111111111
Q ss_pred cchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccc
Q psy15524 782 IEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFK 861 (930)
Q Consensus 782 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~ 861 (930)
..+. ........+.+ .......+..+...++++|.++++.|..+ .+..|++.
T Consensus 333 ~~~~----------------~~~~~~~~e~~---------~~~~~~~~~~l~~~~~~~~~~~l~~~~~~---~~~~~~~~ 384 (451)
T 2jlq_A 333 TPEG----------------IIPTLFGPERE---------KTQAIDGEFRLRGEQRKTFVELMRRGDLP---VWLSYKVA 384 (451)
T ss_dssp CTTC----------------CCCCCCGGGGG---------GCCCCTTTTCCCHHHHHHHHHHHHTSCCC---HHHHHHHH
T ss_pred ChhH----------------hHHhhcCCchh---------hccCCCcccccCchhHHHHHHHHhhcCCc---HHHhHHHH
Confidence 1110 00000000000 00001112234456778999999988654 47889999
Q ss_pred cCChHHHHHhcCCCCCC
Q psy15524 862 QIHLGHFAKSFALRDAP 878 (930)
Q Consensus 862 ~l~~~~~a~sf~l~~~p 878 (930)
..++.-.+++|++..+|
T Consensus 385 ~~~~~~~~~~~~~~~~~ 401 (451)
T 2jlq_A 385 SAGISYKDREWCFTGER 401 (451)
T ss_dssp HTTCCTTCCGGGTCSCG
T ss_pred HcCCCcccchhhhcCCC
Confidence 99999999999999888
No 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.2e-41 Score=383.15 Aligned_cols=357 Identities=16% Similarity=0.185 Sum_probs=242.2
Q ss_pred hhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCC
Q psy15524 425 PILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGG 504 (930)
Q Consensus 425 ~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg 504 (930)
.+++|+|++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+..+. .....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~~-------v~~~~~~ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD-------VKFHTQA 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC-------EEEESSC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcCC-------eEEeccc
Confidence 46789999999999999999999999998764 36789999999999999999886432 1111111
Q ss_pred CchHHHHHHHhcCCcEEEECchhHHHhhhcc-------CCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccc
Q psy15524 505 EKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 577 (930)
Q Consensus 505 ~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-------~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~ 577 (930)
. -.++||+++.+++... ....+++++++|+||||++ +.++...+..+...+. ..+.
T Consensus 69 ~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~--~~~~ 131 (440)
T 1yks_A 69 F--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR--ANES 131 (440)
T ss_dssp C--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--TTSC
T ss_pred c--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--cCCc
Confidence 0 0388888876554431 1123789999999999998 4444444444444443 2478
Q ss_pred eEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCC
Q psy15524 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 657 (930)
Q Consensus 578 q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 657 (930)
|+++||||+++.+..+... ..+... ....++..... .+...+... +
T Consensus 132 ~~l~~SAT~~~~~~~~~~~--~~~~~~-----------------------~~~~~~~~~~~-~~~~~l~~~--------~ 177 (440)
T 1yks_A 132 ATILMTATPPGTSDEFPHS--NGEIED-----------------------VQTDIPSEPWN-TGHDWILAD--------K 177 (440)
T ss_dssp EEEEECSSCTTCCCSSCCC--SSCEEE-----------------------EECCCCSSCCS-SSCHHHHHC--------C
T ss_pred eEEEEeCCCCchhhhhhhc--CCCeeE-----------------------eeeccChHHHH-HHHHHHHhc--------C
Confidence 9999999998754322221 011110 00001111110 111222221 5
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE---
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ--- 734 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~--- 734 (930)
+++||||++++.++.+++.|... ++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~---~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~ 249 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA---GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRT 249 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT---TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc---CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCc
Confidence 79999999999999999999885 788999999 4688999999999999999999999999999 999986
Q ss_pred ----------------ecCCCChhhHHhhhcccccC-CCCceEEEEe---CcccHHHHHHHHhcCCccchhchHHHHHhh
Q psy15524 735 ----------------YTAPSSSTDYVHRVGRTARV-GHEGSSLLFL---IPSEVKLVEELQNRRIRIEEIKLKDCLQNL 794 (930)
Q Consensus 735 ----------------~~~p~s~~~y~qr~GRagR~-g~~g~~~~~~---~~~e~~~~~~l~~~~~~~~~~~~~~~~~~l 794 (930)
++.|.+..+|+||+||+||. |++|.|++|+ .+.+..+++.+... +.+.+..+..
T Consensus 250 ~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~-~~~~~~~l~~----- 323 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS-MLLDNMEVRG----- 323 (440)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH-HHHTTSCCGG-----
T ss_pred cceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHH-hccccccccc-----
Confidence 89999999999999999997 6899999996 67777777776543 2222221110
Q ss_pred hhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHHHHHhcCC
Q psy15524 795 LSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFAL 874 (930)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~~a~sf~l 874 (930)
...+.... . -|+.. ..+..+..+.+.+.++|.++++.|... .+..|++.+.+++..+++|++
T Consensus 324 ---~~~~~~~~-----~------~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 385 (440)
T 1yks_A 324 ---GMVAPLYG-----V------EGTKT-PVSPGEMRLRDDQRKVFRELVRNCDLP---VWLSWQVAKAGLKTNDRKWCF 385 (440)
T ss_dssp ---GCCCCCST-----T------HHHHS-SSCTTTTCCCHHHHHHHHHHHHTTCCC---HHHHHHHHHTTCCTTCCGGGS
T ss_pred ---cccccccc-----h------hhccC-CCCCcccccChhHHHHHHHHHHhcCCc---hhhhhhhhhcCCceeeeeEEe
Confidence 00000000 0 01111 113455567788999999999987643 235588999999999999999
Q ss_pred CCCCc
Q psy15524 875 RDAPS 879 (930)
Q Consensus 875 ~~~p~ 879 (930)
..+|+
T Consensus 386 ~~~~~ 390 (440)
T 1yks_A 386 EGPEE 390 (440)
T ss_dssp CSCGG
T ss_pred cCCCc
Confidence 99997
No 41
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.1e-37 Score=357.70 Aligned_cols=331 Identities=23% Similarity=0.262 Sum_probs=242.7
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.+++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~- 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNL- 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCS-
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCc-
Confidence 6899999999999999 99999999999999999999987752 3567999999999999999999998742
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
....+..+.|+..... ......+++|+|+||+++...+.. ..+.+.+++++|+||||++.+......+.. .+...
T Consensus 79 ~~~~v~~~~g~~~~~~-~~~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~---~~~~~ 153 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEE-RSKAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAR---EYKRQ 153 (494)
T ss_dssp CGGGEEEECSCSCHHH-HHHHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHH---HHHHH
T ss_pred chhheEEeeCCcchhh-hhhhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHH---HHHhc
Confidence 2335566777765543 334445789999999999988775 445678999999999999986544333333 33333
Q ss_pred CccceEEEEccccCHH---HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEc------------------
Q psy15524 574 KPQFQSILLSATLTPA---VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT------------------ 632 (930)
Q Consensus 574 ~~~~q~vl~SAT~~~~---~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 632 (930)
.+..+++++|||+.+. +..+.......+..+........ .....+..........
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDV----RPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDA 229 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTT----GGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHH----HHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHH
Confidence 4478899999999743 34444333222221111110000 0000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy15524 633 -------------------------------------------------------------------------------- 632 (930)
Q Consensus 633 -------------------------------------------------------------------------------- 632 (930)
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (494)
T 1wp9_A 230 LKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAK 309 (494)
T ss_dssp HHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhc
Confidence
Q ss_pred ------------------------------CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC
Q psy15524 633 ------------------------------PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682 (930)
Q Consensus 633 ------------------------------~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~ 682 (930)
....|...+...+...... ..+.++||||++.+.++.+++.|...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~-- 384 (494)
T 1wp9_A 310 AGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR---KQNSKIIVFTNYRETAKKIVNELVKD-- 384 (494)
T ss_dssp TTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH---CTTCCEEEECSCHHHHHHHHHHHHHT--
T ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc---CCCCeEEEEEccHHHHHHHHHHHHHc--
Confidence 1223444455555443211 13789999999999999999999886
Q ss_pred CCceEEEecC--------CCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 683 ENIAFFKLHG--------SMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 683 ~~~~~~~lhg--------~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
++.+..+|| +|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.++..|+||+||+||.
T Consensus 385 -~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 385 -GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463 (494)
T ss_dssp -TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC
T ss_pred -CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC
Confidence 788899999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCcccHH
Q psy15524 755 GHEGSSLLFLIPSEVK 770 (930)
Q Consensus 755 g~~g~~~~~~~~~e~~ 770 (930)
|+ |.++.|+.+...+
T Consensus 464 g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 464 MP-GRVIILMAKGTRD 478 (494)
T ss_dssp CC-SEEEEEEETTSHH
T ss_pred CC-ceEEEEEecCCHH
Confidence 98 9999999987543
No 42
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=8.4e-37 Score=382.15 Aligned_cols=326 Identities=18% Similarity=0.220 Sum_probs=247.8
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhc----CC--cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILD----GG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 397 ~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~----~~--d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
..++...+.+.+.++|. +||+|.++|+.++. |+ |+++++|||+|||++|+++++..+. .+.+++
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~vl 656 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQVA 656 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCEEE
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCeEE
Confidence 45556666777778986 69999999999987 66 8999999999999999999987654 367899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH---HHHHhc-CCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE---KARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
|++||++||.|+++.+.+.+..++ ..+..++|....... ...+.. .++|+|+||+.+. ....+++++++
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lv 729 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLL 729 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceE
Confidence 999999999999999998876554 345556665443332 333444 4999999998663 23567899999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCce
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 626 (930)
|+||+|++. .....++..++ ...++++||||+++....+....+.++..+...... ...+.
T Consensus 730 IiDEaH~~g-----~~~~~~l~~l~---~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~-----------r~~i~ 790 (1151)
T 2eyq_A 730 IVDEEHRFG-----VRHKERIKAMR---ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-----------RLAVK 790 (1151)
T ss_dssp EEESGGGSC-----HHHHHHHHHHH---TTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB-----------CBCEE
T ss_pred EEechHhcC-----hHHHHHHHHhc---CCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC-----------ccccE
Confidence 999999953 22334444444 378999999999887766666666554433221110 01223
Q ss_pred EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHh
Q psy15524 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTF 706 (930)
Q Consensus 627 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F 706 (930)
..+....... .....+.... .+++++|||++++.++.+++.|.+.++ +..+..+||+|++.+|..++++|
T Consensus 791 ~~~~~~~~~~---i~~~il~~l~------~g~qvlvf~~~v~~~~~l~~~L~~~~p-~~~v~~lhg~~~~~eR~~il~~F 860 (1151)
T 2eyq_A 791 TFVREYDSMV---VREAILREIL------RGGQVYYLYNDVENIQKAAERLAELVP-EARIAIGHGQMRERELERVMNDF 860 (1151)
T ss_dssp EEEEECCHHH---HHHHHHHHHT------TTCEEEEECCCSSCHHHHHHHHHHHCT-TSCEEECCSSCCHHHHHHHHHHH
T ss_pred EEEecCCHHH---HHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCC-CCeEEEEeCCCCHHHHHHHHHHH
Confidence 3333222221 1222222211 267999999999999999999988753 67888999999999999999999
Q ss_pred hcCCCcEEEeccccccccCCCCccEEEEecC-CCChhhHHhhhcccccCCCCceEEEEeCccc
Q psy15524 707 RSVKSGVLICTDVAARGLDLPLVDWIVQYTA-PSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768 (930)
Q Consensus 707 ~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~-p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e 768 (930)
++|+.+|||||+++++|+|+|++++||.++. +.++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 861 ~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 861 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999999999999999999999999988 5689999999999999999999999987653
No 43
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=388.02 Aligned_cols=337 Identities=21% Similarity=0.297 Sum_probs=225.7
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH-HHHHHHhhcc
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT-LEIFTKLCKS 492 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~-~~~~~~~~~~ 492 (930)
.|+|+|.++++.++.|+|+++.+|||+|||++|++|+++.+..... ...+.++|||+|+++|+.|+ .+.+.+++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 7999999999999999999999999999999999999998876321 12346799999999999999 9999998864
Q ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhc-----cCCcccccceEEEEecchhhhhcCcH-HHHHHH
Q psy15524 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH-----TETLKFSKVEHLVLDEADRILDQGYE-RDIAEF 566 (930)
Q Consensus 493 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~-----~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i 566 (930)
...+..+.|+.........+..+.+|+|+||++|.+++.+ ...+.+.++++||+||||++...++. ..+..+
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 2556778888766555556667899999999999988843 23456789999999999998665432 333322
Q ss_pred HHH-HhhcC---------ccceEEEEccccCHH-----------HHHHHhhhcCCCEEEEccCCCCcccCccceecCCCc
Q psy15524 567 LEI-LKKQK---------PQFQSILLSATLTPA-----------VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625 (930)
Q Consensus 567 ~~~-l~~~~---------~~~q~vl~SAT~~~~-----------~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 625 (930)
+.. +.... +..+++++|||++.. +..+....-.. .+...... ..... ...+...
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~--~i~~~~~~-~~~l~--~~~~~p~ 236 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAF--TIKTVKEN-LDQLK--NQIQEPC 236 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCS--CCCCCCTT-HHHHH--HHSCCCE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCC--EEEeecCc-hHHHh--hhcCCCc
Confidence 222 21111 467999999999862 22222221110 00000000 00000 0000000
Q ss_pred eEEEEEcCc-----------------------------------------------------------------------
Q psy15524 626 KQHFIVTPP----------------------------------------------------------------------- 634 (930)
Q Consensus 626 ~~~~~~~~~----------------------------------------------------------------------- 634 (930)
. .+..+..
T Consensus 237 ~-~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 237 K-KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp E-EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred e-EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0 1110000
Q ss_pred ----------------------------------------------------------------hhhHHHHHHHHHhhcc
Q psy15524 635 ----------------------------------------------------------------KLRLVALASFILGKCQ 650 (930)
Q Consensus 635 ----------------------------------------------------------------~~~~~~l~~~l~~~~~ 650 (930)
..|...+...+.....
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 0011111112211110
Q ss_pred CCCcCC-CceEEEEecchhhHHHHHHHHhhh--cC-CCceEEEecCC--------CCHHHHHHHHHHhhcCCCcEEEecc
Q psy15524 651 NVNEDE-ESKMLVFMATQDMADYHTELLSTV--LG-ENIAFFKLHGS--------MSQSERTEVFKTFRSVKSGVLICTD 718 (930)
Q Consensus 651 ~~~~~~-~~k~iVF~~s~~~~~~~~~~l~~~--~~-~~~~~~~lhg~--------~~~~~R~~v~~~F~~~~~~vLv~T~ 718 (930)
..+ +.++||||++++.++.+++.|... +. .|+.+..+||+ |++.+|..++++|++|+.+|||||+
T Consensus 396 ---~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~ 472 (699)
T 4gl2_A 396 ---RTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT 472 (699)
T ss_dssp ---HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC
T ss_pred ---cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc
Confidence 012 679999999999999999999864 11 16788899999 9999999999999999999999999
Q ss_pred ccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc
Q psy15524 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767 (930)
Q Consensus 719 ~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~ 767 (930)
++++|||+|+|++||+||+|.++..|+||+|||||.| .+++++.+.
T Consensus 473 ~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 473 VAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp SCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred ccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 9999999999999999999999999999999976644 555555543
No 44
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=9.5e-40 Score=373.52 Aligned_cols=363 Identities=15% Similarity=0.184 Sum_probs=243.6
Q ss_pred HHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEe
Q psy15524 423 IQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT 502 (930)
Q Consensus 423 i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~ 502 (930)
...+.++++++++||||||||++|++|+++.+.. .+.++||++|||+||.|+++.+... ......
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~ 79 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL-------PVRYQT 79 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS-------CEEECC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc-------eEeEEe
Confidence 4456678899999999999999999999988764 3678999999999999999988621 111111
Q ss_pred CCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchh-----hhhcCcHHHHHHHHHHHhhcCccc
Q psy15524 503 GGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-----ILDQGYERDIAEFLEILKKQKPQF 577 (930)
Q Consensus 503 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~-----l~~~g~~~~l~~i~~~l~~~~~~~ 577 (930)
+.... .-..+..+.++|.+.+...+.. ...++++++||+||||+ ++..+|... ... .+..
T Consensus 80 ~~~~~-----~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~------~~~--~~~~ 144 (459)
T 2z83_A 80 SAVQR-----EHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIAT------KVE--LGEA 144 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHH------HHH--TTSC
T ss_pred ccccc-----CCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHH------Hhc--cCCc
Confidence 11100 0123456778888888766654 24578999999999998 444444222 111 2478
Q ss_pred eEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCC
Q psy15524 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 657 (930)
Q Consensus 578 q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 657 (930)
|+++||||++..+..+... ..|+..... ..+. . ....+...+... .
T Consensus 145 ~~il~SAT~~~~~~~~~~~--~~pi~~~~~------------~~~~-----------~-~~~~~~~~l~~~--------~ 190 (459)
T 2z83_A 145 AAIFMTATPPGTTDPFPDS--NAPIHDLQD------------EIPD-----------R-AWSSGYEWITEY--------A 190 (459)
T ss_dssp EEEEECSSCTTCCCSSCCC--SSCEEEEEC------------CCCS-----------S-CCSSCCHHHHHC--------C
T ss_pred cEEEEEcCCCcchhhhccC--CCCeEEecc------------cCCc-----------c-hhHHHHHHHHhc--------C
Confidence 9999999998754322211 223222100 0000 0 000011222221 5
Q ss_pred ceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEE---
Q psy15524 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ--- 734 (930)
Q Consensus 658 ~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~--- 734 (930)
+++||||++++.++.+++.|... ++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~---g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA---GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT---TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc---CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCc
Confidence 79999999999999999999885 7888899995 6888999999999999999999999999999 99999
Q ss_pred -----------------ecCCCChhhHHhhhcccccCCC-CceEEEEeCcc--cHHHHHHHHhcCCccchhchHHHHHhh
Q psy15524 735 -----------------YTAPSSSTDYVHRVGRTARVGH-EGSSLLFLIPS--EVKLVEELQNRRIRIEEIKLKDCLQNL 794 (930)
Q Consensus 735 -----------------~~~p~s~~~y~qr~GRagR~g~-~g~~~~~~~~~--e~~~~~~l~~~~~~~~~~~~~~~~~~l 794 (930)
||.|.+..+|+||+|||||.|. +|.+++|+.+. +...+..+....+.+.+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 336 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHWTEAKIMLDNIHMP------ 336 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCCT------
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhhhhHHHHHhcCCCh------
Confidence 7799999999999999999997 99999999885 333333332111111111100
Q ss_pred hhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcccccccccccccCChHHHHHhcCC
Q psy15524 795 LSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFAL 874 (930)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~~~~~~~f~~~~l~~~~~a~sf~l 874 (930)
.+..... .+..... . ..+..+..+.+.++++|.+|++.|... .+..|++.++++...+++|++
T Consensus 337 -----~~~~~~~----~~p~~~k----~-~~~~~~~~l~~~~~~~~~~~l~~~d~~---~~~~~~~~~~~~~~~~~~~~~ 399 (459)
T 2z83_A 337 -----NGLVAQL----YGPEREK----A-FTMDGEYRLRGEEKKNFLELLRTADLP---VWLAYKVASNGIQYTDRKWCF 399 (459)
T ss_dssp -----TSCCCCC----CGGGGGG----C-CCCTTTTCCCHHHHHHHHHHHHTSCCC---HHHHHHHHHTTCCTTCCGGGT
T ss_pred -----HHHHHhc----cCCCccc----c-cccCcchhcchHHHHHHHHHHhhcCCC---hhHhHHHhhccCccccceeee
Confidence 0000000 0000000 0 011234456678899999999988853 678899999999999999999
Q ss_pred CCCCcc
Q psy15524 875 RDAPSV 880 (930)
Q Consensus 875 ~~~p~~ 880 (930)
..+|..
T Consensus 400 ~~~~~~ 405 (459)
T 2z83_A 400 DGPRTN 405 (459)
T ss_dssp CSCGGG
T ss_pred eCCCCC
Confidence 999953
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.7e-39 Score=383.16 Aligned_cols=368 Identities=15% Similarity=0.195 Sum_probs=245.0
Q ss_pred CCCHHHH-----HhHHhhh------cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 414 QVTTVQQ-----LSIQPIL------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 414 ~~~~iQ~-----~~i~~il------~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.||++|+ ++||.++ +++|++++||||||||++|++|+++.+.. .+.++||++||++||.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 8999999 9999998 89999999999999999999999988764 367899999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc-------CCcccccceEEEEecchhhh
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT-------ETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~-------~~~~~~~l~~lVlDEah~l~ 555 (930)
++.+..+. .....+... .++||+++++++... ....++++++||+||||++
T Consensus 287 ~~~l~~~~-------i~~~~~~l~--------------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~- 344 (673)
T 2wv9_A 287 AEALRGLP-------VRYLTPAVQ--------------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT- 344 (673)
T ss_dssp HHHTTTSC-------CEECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC-
T ss_pred HHHHhcCC-------eeeeccccc--------------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc-
Confidence 98886442 111111000 156666654433221 1135789999999999998
Q ss_pred hcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCch
Q psy15524 556 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK 635 (930)
Q Consensus 556 ~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (930)
+.++...+..+...++ ....|+++||||+++.+..+... ..|+. .+.. ..+..
T Consensus 345 ~~~~~~~~~~l~~~~~--~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~----------------------~~~~~ 397 (673)
T 2wv9_A 345 DPASIAARGYIATRVE--AGEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSS----------------------EIPDR 397 (673)
T ss_dssp CHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCCCSSCCC--SSCEE-EEEC----------------------CCCSS
T ss_pred CccHHHHHHHHHHhcc--ccCCcEEEEcCCCChhhhhhccc--CCceE-EEee----------------------ecCHH
Confidence 3323333333434433 14789999999998653322111 01111 0000 00111
Q ss_pred hhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE
Q psy15524 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715 (930)
Q Consensus 636 ~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv 715 (930)
.. ..+...+.. .++++||||++++.++.+++.|... ++.+..+||+ +|..+++.|++|+.+|||
T Consensus 398 ~~-~~~l~~l~~--------~~~~~lVF~~s~~~~e~la~~L~~~---g~~v~~lHg~----eR~~v~~~F~~g~~~VLV 461 (673)
T 2wv9_A 398 AW-SSGFEWITD--------YAGKTVWFVASVKMSNEIAQCLQRA---GKRVIQLNRK----SYDTEYPKCKNGDWDFVI 461 (673)
T ss_dssp CC-SSCCHHHHS--------CCSCEEEECSSHHHHHHHHHHHHTT---TCCEEEECSS----SHHHHGGGGGTCCCSEEE
T ss_pred HH-HHHHHHHHh--------CCCCEEEEECCHHHHHHHHHHHHhC---CCeEEEeChH----HHHHHHHHHHCCCceEEE
Confidence 10 011122221 1679999999999999999999875 7889999994 799999999999999999
Q ss_pred eccccccccCCCCccEEEE--------------------ecCCCChhhHHhhhcccccC-CCCceEEEEe---CcccHHH
Q psy15524 716 CTDVAARGLDLPLVDWIVQ--------------------YTAPSSSTDYVHRVGRTARV-GHEGSSLLFL---IPSEVKL 771 (930)
Q Consensus 716 ~T~~~~~GlDip~v~~VI~--------------------~~~p~s~~~y~qr~GRagR~-g~~g~~~~~~---~~~e~~~ 771 (930)
||+++++|+|+| +++||+ ||.|.+.++|+||+||+||. |+.|.|++|+ .+.+..+
T Consensus 462 aTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~ 540 (673)
T 2wv9_A 462 TTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTML 540 (673)
T ss_dssp ECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTB
T ss_pred ECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHH
Confidence 999999999999 999998 67899999999999999999 7899999996 5677666
Q ss_pred HHHHHhcCCccchhchHHHHHhhhhhhccCccccccccchHHHHHHHHHHHHHHHHhcHHHHHHHhhhhHHHHHHhhhcc
Q psy15524 772 VEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYS 851 (930)
Q Consensus 772 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~s~~~~y~~~~ 851 (930)
++.++.. +.++...+. .+....... . -|+.+.. +..+..+.+.++++|.++++.+...
T Consensus 541 l~~ie~~-~~l~~~~~~-----------~g~~~a~~~--~------~q~~~~~-~~~~~~l~~~a~~~~~~ll~~~~~~- 598 (673)
T 2wv9_A 541 AHWTEAK-ILLDNIHLP-----------NGLVAQLYG--P------ERDKTYT-MDGEYRLRGEERKTFLELIKTADLP- 598 (673)
T ss_dssp HHHHHHH-HHHHTSCBT-----------TTBCCCCCG--G------GGGGCCC-CTTTTCCCHHHHHHHHHHHHTSCCC-
T ss_pred HHHHHHH-HhhhhccCC-----------chhhhhccc--h------hhhcccc-chhhhhHHHHHHHHHHHHHhccCCc-
Confidence 6665442 111111110 011000000 0 0111111 2345567778888999888865432
Q ss_pred cccccccccccCChHHHHHhcCCCCCCc
Q psy15524 852 KDLRHIFNFKQIHLGHFAKSFALRDAPS 879 (930)
Q Consensus 852 ~~~~~~f~~~~l~~~~~a~sf~l~~~p~ 879 (930)
.+..|++....+....++|++..+|.
T Consensus 599 --~~l~~~~a~~~l~~~~~~w~~~~~~~ 624 (673)
T 2wv9_A 599 --VWLAYKVASNGIQYNDRKWCFDGPRS 624 (673)
T ss_dssp --HHHHHHHHHHTCCSSCCGGGTSSCTT
T ss_pred --hhHHHHHHHhcccccCceeEeeCCCc
Confidence 33445555666666667788888886
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5.9e-36 Score=360.11 Aligned_cols=341 Identities=17% Similarity=0.225 Sum_probs=245.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
.+|+++ ++++.+.+.+.+. + ..|+++|+++|+.++.+ ++++++||||||||+ ++|++-.... .....+.+
T Consensus 72 ~~f~~~-~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~----~~~~~g~~ 142 (773)
T 2xau_A 72 NPFTGR-EFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE----MPHLENTQ 142 (773)
T ss_dssp CTTTCS-BCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH----CGGGGTCE
T ss_pred CCcccc-CCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc----cccCCCce
Confidence 469999 8999999999763 5 78999999999998864 679999999999999 5676622211 11123677
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
++|++|+|+|+.|+++.+...........++.-...... ...+.+|+++|||++..++... ..+.++++|||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIl 214 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED--HDLSRYSCIIL 214 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEE
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEe
Confidence 999999999999999887665532222222222221111 1246789999999999877652 45789999999
Q ss_pred ecchh-hhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceE
Q psy15524 549 DEADR-ILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627 (930)
Q Consensus 549 DEah~-l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 627 (930)
||+|. .++..+ +..++..+....++.|++++|||++. ..+... +.++..+.+.... ..+.+
T Consensus 215 DEah~R~ld~d~---~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~~-~~~~~vi~v~gr~------------~pv~~ 276 (773)
T 2xau_A 215 DEAHERTLATDI---LMGLLKQVVKRRPDLKIIIMSATLDA--EKFQRY-FNDAPLLAVPGRT------------YPVEL 276 (773)
T ss_dssp CSGGGCCHHHHH---HHHHHHHHHHHCTTCEEEEEESCSCC--HHHHHH-TTSCCEEECCCCC------------CCEEE
T ss_pred cCccccccchHH---HHHHHHHHHHhCCCceEEEEeccccH--HHHHHH-hcCCCcccccCcc------------cceEE
Confidence 99994 554321 12222333233357899999999964 344443 3433334432211 12344
Q ss_pred EEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhh--------cCCCceEEEecCCCCHHHH
Q psy15524 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV--------LGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 628 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~--------~~~~~~~~~lhg~~~~~~R 699 (930)
.|...+...........+...... ...+++||||++++.++.+++.|.+. ...++.+..+||+|++.+|
T Consensus 277 ~~~~~~~~~~~~~~l~~l~~~~~~---~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR 353 (773)
T 2xau_A 277 YYTPEFQRDYLDSAIRTVLQIHAT---EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQ 353 (773)
T ss_dssp ECCSSCCSCHHHHHHHHHHHHHHH---SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHH
T ss_pred EEecCCchhHHHHHHHHHHHHHHh---cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHH
Confidence 444444444444333333332211 12679999999999999999998752 1247889999999999999
Q ss_pred HHHHHHhh-----cCCCcEEEeccccccccCCCCccEEEEecC------------------CCChhhHHhhhcccccCCC
Q psy15524 700 TEVFKTFR-----SVKSGVLICTDVAARGLDLPLVDWIVQYTA------------------PSSSTDYVHRVGRTARVGH 756 (930)
Q Consensus 700 ~~v~~~F~-----~~~~~vLv~T~~~~~GlDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~ 756 (930)
..+++.|. +|..+|||||+++++|||+|+|++||+++. |.|..+|+||+|||||. .
T Consensus 354 ~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~ 432 (773)
T 2xau_A 354 QRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-R 432 (773)
T ss_dssp GGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-S
T ss_pred HHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-C
Confidence 99999999 999999999999999999999999999877 89999999999999999 7
Q ss_pred CceEEEEeCcccH
Q psy15524 757 EGSSLLFLIPSEV 769 (930)
Q Consensus 757 ~g~~~~~~~~~e~ 769 (930)
+|.|+.|+++.+.
T Consensus 433 ~G~~~~l~~~~~~ 445 (773)
T 2xau_A 433 PGKCFRLYTEEAF 445 (773)
T ss_dssp SEEEEESSCHHHH
T ss_pred CCEEEEEecHHHh
Confidence 9999999986654
No 47
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.2e-36 Score=350.36 Aligned_cols=320 Identities=15% Similarity=0.152 Sum_probs=228.0
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
...|+|+|.++++.++.++|+++++|||+|||++|++|+...+.. .+.++|||+||++|+.|+++.+.++..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 348999999999999999999999999999999999999887754 234899999999999999999988743
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
++...+..+.|+...... ...+.+|+|+||+.+... ....+.++++||+||||++.. ..+..++ .
T Consensus 183 -~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il---~ 247 (510)
T 2oca_A 183 -FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSII---S 247 (510)
T ss_dssp -SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHG---G
T ss_pred -CCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHH---H
Confidence 333455667777554332 346789999999976533 234578899999999999876 2334443 3
Q ss_pred hcCccceEEEEccccCHHHHHHH-hhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcC-----------------
Q psy15524 572 KQKPQFQSILLSATLTPAVQRLA-GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP----------------- 633 (930)
Q Consensus 572 ~~~~~~q~vl~SAT~~~~~~~l~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 633 (930)
......+++++|||+++....+. ...+.++..+........ ......+..........+
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLM---EDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIK 324 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC------------CCEEEEEEEECCHHHHHHHTTCCHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHh---hCCcCCCceEEEEeecCChHHhccccccchHHHHH
Confidence 33447799999999976532211 111223333222211100 000111111111111111
Q ss_pred ----chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC
Q psy15524 634 ----PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709 (930)
Q Consensus 634 ----~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~ 709 (930)
...+...+...+..... ..+.++|||++ .+.++.+++.|.+. +..+..+||+|++.+|..+++.|++|
T Consensus 325 ~~~~~~~~~~~l~~~l~~~~~----~~~~~~ivf~~-~~~~~~l~~~L~~~---~~~v~~~~g~~~~~~r~~i~~~f~~g 396 (510)
T 2oca_A 325 IITGLSKRNKWIAKLAIKLAQ----KDENAFVMFKH-VSHGKAIFDLIKNE---YDKVYYVSGEVDTETRNIMKTLAENG 396 (510)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT----TTCEEEEEESS-HHHHHHHHHHHHTT---CSSEEEESSSTTHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHHHh----cCCCeEEEEec-HHHHHHHHHHHHHc---CCCeEEEECCCCHHHHHHHHHHHhCC
Confidence 11233334444443322 12556677776 88888899999875 44788899999999999999999999
Q ss_pred CCcEEEec-cccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeC
Q psy15524 710 KSGVLICT-DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 710 ~~~vLv~T-~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
+.+||||| +++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++.
T Consensus 397 ~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 397 KGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999 999999999999999999999999999999999999998875555554
No 48
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=6.5e-34 Score=322.12 Aligned_cols=332 Identities=17% Similarity=0.150 Sum_probs=235.3
Q ss_pred HHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHH
Q psy15524 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 482 (930)
Q Consensus 403 ~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~ 482 (930)
.++..+.+|+ .++++|....-.+..|+ |+++.||+|||+++.+|++-..+. |..+.||+||++||.|.
T Consensus 65 REAa~R~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rd 132 (822)
T 3jux_A 65 REAARRTLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRD 132 (822)
T ss_dssp HHHHHHHTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhH
Confidence 3344445665 57788888777777777 999999999999999999866543 77799999999999999
Q ss_pred HHHHHHhhccCCCcceEEEeCCC------------------------------------------------chHHHHHHH
Q psy15524 483 LEIFTKLCKSFTWIVPSWLTGGE------------------------------------------------KMKSEKARI 514 (930)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~gg~------------------------------------------------~~~~~~~~~ 514 (930)
++.+..++..++.. +++++... ......++.
T Consensus 133 ae~m~~l~~~Lgls-vg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~ 211 (822)
T 3jux_A 133 ALWMGPVYLFLGLR-VGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE 211 (822)
T ss_dssp HHHHHHHHHHTTCC-EEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH
T ss_pred HHHHHHHHHHhCCE-EEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH
Confidence 99999999887754 45555510 111122333
Q ss_pred hcCCcEEEECchhH-HHhhhcc-----CCcccccceEEEEecchhhh-hc--------C-------cHHHHHHHHHHH--
Q psy15524 515 RKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQ--------G-------YERDIAEFLEIL-- 570 (930)
Q Consensus 515 ~~~~~Ilv~Tp~rl-~~~l~~~-----~~~~~~~l~~lVlDEah~l~-~~--------g-------~~~~l~~i~~~l-- 570 (930)
...|||+++|...+ .|.|+.. .....+.+.+.|+||+|.++ |. | +...+..++..|
T Consensus 212 aY~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~ 291 (822)
T 3jux_A 212 AYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVK 291 (822)
T ss_dssp HHHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCB
T ss_pred HhcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCc
Confidence 45689999999886 4444432 23345779999999999875 10 0 001111111111
Q ss_pred ------------------------------------------------hhc---Cc------------------------
Q psy15524 571 ------------------------------------------------KKQ---KP------------------------ 575 (930)
Q Consensus 571 ------------------------------------------------~~~---~~------------------------ 575 (930)
+.. ..
T Consensus 292 ~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~g 371 (822)
T 3jux_A 292 DKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPG 371 (822)
T ss_dssp TTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCS
T ss_pred CCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCC
Confidence 100 00
Q ss_pred -------------------------------------cceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccc
Q psy15524 576 -------------------------------------QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDS 618 (930)
Q Consensus 576 -------------------------------------~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~ 618 (930)
-.++.+||+|.......+...+.-+ .+.+.....
T Consensus 372 rr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnkp------- 442 (822)
T 3jux_A 372 RRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHKP------- 442 (822)
T ss_dssp CCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSSC-------
T ss_pred CcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCCC-------
Confidence 1256777777776666665555322 222211100
Q ss_pred eecCCCce-EEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHH
Q psy15524 619 LVIPDSLK-QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697 (930)
Q Consensus 619 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~ 697 (930)
. .... +..+......|...+...+..... .+.++||||+|++.++.++..|.+. |+.+..+||++.+.
T Consensus 443 -~--~R~d~~d~vy~t~~eK~~al~~~I~~~~~-----~gqpVLVFt~S~e~sE~Ls~~L~~~---Gi~~~vLhgkq~~r 511 (822)
T 3jux_A 443 -M--IRKDHDDLVFRTQKEKYEKIVEEIEKRYK-----KGQPVLVGTTSIEKSELLSSMLKKK---GIPHQVLNAKYHEK 511 (822)
T ss_dssp -C--CCEECCCEEESSHHHHHHHHHHHHHHHHH-----HTCCEEEEESSHHHHHHHHHHHHTT---TCCCEEECSCHHHH
T ss_pred -c--ceeecCcEEEecHHHHHHHHHHHHHHHhh-----CCCCEEEEECCHHHHHHHHHHHHHC---CCCEEEeeCCchHH
Confidence 0 0111 124556777888888888875322 1679999999999999999999875 88888999997777
Q ss_pred HHHHHHHHhhcCCCcEEEeccccccccCCC--------CccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccH
Q psy15524 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLP--------LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769 (930)
Q Consensus 698 ~R~~v~~~F~~~~~~vLv~T~~~~~GlDip--------~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~ 769 (930)
+|..+.++|+.| .|+||||+++||+||+ +..+||+++.|.+...|+||+|||||+|.+|.+++|++.+|.
T Consensus 512 E~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 512 EAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 777777777776 4999999999999998 667999999999999999999999999999999999998774
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.9e-36 Score=346.53 Aligned_cols=279 Identities=20% Similarity=0.208 Sum_probs=207.1
Q ss_pred CCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCC
Q psy15524 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT 494 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 494 (930)
+.+.|..+++.+.+++|++++||||||||++|.+|+++ .+.++||++|||+||.|+++.+.+.+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~l~~~~g~-- 283 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAYMSKAHGI-- 283 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHHHHHHHSC--
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHHHHHHhCC--
Confidence 34456666666667889999999999999999999874 2557999999999999999988776542
Q ss_pred CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcC
Q psy15524 495 WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574 (930)
Q Consensus 495 ~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~ 574 (930)
..+..+|+.. ...+.+|+|+|||+|+ . ...+.++++++|||||||+ ++.+|...+..+++.++...
T Consensus 284 --~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 284 --DPNIRTGVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp --CCEEECSSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTT
T ss_pred --CeeEEECcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcC
Confidence 2455666654 2457899999999984 2 2456788999999999975 57788888888888876522
Q ss_pred ccceEEEEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCc
Q psy15524 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNE 654 (930)
Q Consensus 575 ~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 654 (930)
...++++|||+++.+. ...+....+... .... ......... +. .
T Consensus 350 -~~llil~SAT~~~~i~------~~~p~i~~v~~~-----------~~~~----i~~~~~~~~-------l~-------~ 393 (666)
T 3o8b_A 350 -ARLVVLATATPPGSVT------VPHPNIEEVALS-----------NTGE----IPFYGKAIP-------IE-------A 393 (666)
T ss_dssp -CSEEEEEESSCTTCCC------CCCTTEEEEECB-----------SCSS----EEETTEEEC-------GG-------G
T ss_pred -CceEEEECCCCCcccc------cCCcceEEEeec-----------ccch----hHHHHhhhh-------hh-------h
Confidence 3346788999987311 111111111000 0000 000000000 00 1
Q ss_pred CCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEE-
Q psy15524 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIV- 733 (930)
Q Consensus 655 ~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI- 733 (930)
...+++||||++++.++.+++.|.+. ++.+..+||+|++++ |.++..+||||||+++||||+| +++||
T Consensus 394 ~~~~~vLVFv~Tr~~ae~la~~L~~~---g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~ 462 (666)
T 3o8b_A 394 IRGGRHLIFCHSKKKCDELAAKLSGL---GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVID 462 (666)
T ss_dssp SSSSEEEEECSCHHHHHHHHHHHHTT---TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEE
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHhC---CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEe
Confidence 12789999999999999999999875 788999999999875 5566679999999999999997 99998
Q ss_pred ---------Eec-----------CCCChhhHHhhhcccccCCCCceEEEEeCcccHH
Q psy15524 734 ---------QYT-----------APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770 (930)
Q Consensus 734 ---------~~~-----------~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~ 770 (930)
+|| .|.+.++|+||+||||| |++|. +.|+.+.|..
T Consensus 463 ~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 463 CNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp CCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 567 89999999999999999 99999 9999887654
No 50
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.8e-35 Score=342.31 Aligned_cols=297 Identities=19% Similarity=0.220 Sum_probs=216.1
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.|+|+|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.|+.+.+.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 6899999999999999999999999999999999988753 456999999999999999999883
Q ss_pred CCcc-eEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 494 TWIV-PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 494 ~~~~-~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
+ .. ++.+.|+... ..+|+|+||+.+...+... ..++++||+||||++.+.++.. ++..+
T Consensus 157 ~-~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-- 216 (472)
T 2fwr_A 157 G-EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-- 216 (472)
T ss_dssp C-GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC--
T ss_pred C-CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc--
Confidence 2 33 5666666542 5799999999998766431 2468999999999999888764 33333
Q ss_pred cCccceEEEEccccCH-------------------HHHHHHhhhcCCCEEEEc--cCCCCc---------------ccCc
Q psy15524 573 QKPQFQSILLSATLTP-------------------AVQRLAGMTLQNPIQIDA--ADSTDI---------------HNTT 616 (930)
Q Consensus 573 ~~~~~q~vl~SAT~~~-------------------~~~~l~~~~~~~~~~i~~--~~~~~~---------------~~~~ 616 (930)
+..+++++|||+.. ...++...++.++..+.. ...... ....
T Consensus 217 --~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (472)
T 2fwr_A 217 --IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARG 294 (472)
T ss_dssp --CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCC
T ss_pred --CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 35789999999972 123332222332221111 000000 0000
Q ss_pred cceecCCCceEE---------------------EEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHH
Q psy15524 617 DSLVIPDSLKQH---------------------FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675 (930)
Q Consensus 617 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~ 675 (930)
.....+..+.+. ...+....+...+...+... .+.++||||++.+.++.+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-------~~~k~lvF~~~~~~~~~l~~ 367 (472)
T 2fwr_A 295 ITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-------RKDKIIIFTRHNELVYRISK 367 (472)
T ss_dssp CTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-------SSSCBCCBCSCHHHHHHHHH
T ss_pred ccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-------CCCcEEEEECCHHHHHHHHH
Confidence 000000000000 00122334556666666541 26799999999999999888
Q ss_pred HHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCC
Q psy15524 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755 (930)
Q Consensus 676 ~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g 755 (930)
.|. +..+||++++.+|..++++|++|+.+|||||+++++|+|+|++++||+++.|.++..|+||+||+||.|
T Consensus 368 ~l~--------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 439 (472)
T 2fwr_A 368 VFL--------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 439 (472)
T ss_dssp HTT--------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCC
T ss_pred HhC--------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCC
Confidence 774 235799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ceEEEE
Q psy15524 756 HE-GSSLLF 763 (930)
Q Consensus 756 ~~-g~~~~~ 763 (930)
+. +.++++
T Consensus 440 ~~k~~~~i~ 448 (472)
T 2fwr_A 440 KGKKEAVLY 448 (472)
T ss_dssp TTTCCEEEE
T ss_pred CCCceEEEE
Confidence 65 455553
No 51
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.7e-34 Score=334.82 Aligned_cols=287 Identities=18% Similarity=0.171 Sum_probs=205.4
Q ss_pred HHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEe
Q psy15524 423 IQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT 502 (930)
Q Consensus 423 i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~ 502 (930)
....+++++++++||||||||+ ++++.+... ..++|++|||+||.|+++.+.+.+ ..++.++
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~---------~~gl~l~PtR~LA~Qi~~~l~~~g-----~~v~llt 210 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---------KSGVYCGPLKLLAHEIFEKSNAAG-----VPCDLVT 210 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS---------SSEEEEESSHHHHHHHHHHHHHTT-----CCEEEEC
T ss_pred HHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------CCeEEEeCHHHHHHHHHHHHHhcC-----CcEEEEE
Confidence 3455689999999999999998 455555441 234999999999999999998863 3466777
Q ss_pred CCCchHHHHHHHhcCCcEEEECchhHHHhhhccC-Cc-ccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEE
Q psy15524 503 GGEKMKSEKARIRKGISILVATPGRLLDHCKHTE-TL-KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSI 580 (930)
Q Consensus 503 gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~-~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~v 580 (930)
|+... +++|||++.+++..+. .. ....++++|+||||++++.+|+..+..++..++. ...+++
T Consensus 211 G~~~~-------------iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~--~~i~il 275 (677)
T 3rc3_A 211 GEERV-------------TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA--EEVHLC 275 (677)
T ss_dssp SSCEE-------------CCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE--EEEEEE
T ss_pred CCeeE-------------EecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCc--cceEEE
Confidence 77543 3444444443333221 11 2467899999999999999999988888777752 478999
Q ss_pred EEccccCHHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceE
Q psy15524 581 LLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKM 660 (930)
Q Consensus 581 l~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~ 660 (930)
++|||. +.+..+.... ..+..+...... ..+ .+ ..... ..+.. ...+.
T Consensus 276 ~~SAT~-~~i~~l~~~~-~~~~~v~~~~r~------------~~l--~~--~~~~l------~~l~~--------~~~g~ 323 (677)
T 3rc3_A 276 GEPAAI-DLVMELMYTT-GEEVEVRDYKRL------------TPI--SV--LDHAL------ESLDN--------LRPGD 323 (677)
T ss_dssp ECGGGH-HHHHHHHHHH-TCCEEEEECCCS------------SCE--EE--CSSCC------CSGGG--------CCTTE
T ss_pred eccchH-HHHHHHHHhc-CCceEEEEeeec------------chH--HH--HHHHH------HHHHh--------cCCCC
Confidence 999996 3355555443 233333221100 000 00 00000 00000 02345
Q ss_pred EEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhc--CCCcEEEeccccccccCCCCccEEEEecC-
Q psy15524 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRS--VKSGVLICTDVAARGLDLPLVDWIVQYTA- 737 (930)
Q Consensus 661 iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~--~~~~vLv~T~~~~~GlDip~v~~VI~~~~- 737 (930)
+|||++++.++.+++.|.+. ++.+..+||+|++.+|..+++.|++ |+.+|||||+++++|+|+ ++++||+++.
T Consensus 324 iIf~~s~~~ie~la~~L~~~---g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIR---GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred EEEEcCHHHHHHHHHHHHhc---CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 88999999999999999874 6788889999999999999999999 889999999999999999 8999999998
Q ss_pred -------------CCChhhHHhhhcccccCCCCce--EEEEeCcccHHHHHHHHhc
Q psy15524 738 -------------PSSSTDYVHRVGRTARVGHEGS--SLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 738 -------------p~s~~~y~qr~GRagR~g~~g~--~~~~~~~~e~~~~~~l~~~ 778 (930)
|.+..+|+||+|||||.|..|. .++++.+++...++.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKR 455 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHS
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhc
Confidence 7899999999999999997632 3344455666666666554
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5.9e-34 Score=322.86 Aligned_cols=270 Identities=15% Similarity=0.149 Sum_probs=189.6
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 507 (930)
+|+|++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+.. ..+...+|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~~-------~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALRG-------EPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-------SCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhCC-------CeEEEEecCccc
Confidence 37899999999999999999999977654 367899999999999999987751 223344443211
Q ss_pred HHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 508 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 508 ~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
....+.-+.+.|.|.+...+.. ...+.+++++|+||||++ +.++......+..... .+.+|+++||||++
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~--~~~~~~l~~SAT~~ 135 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS--MGDAGAIFMTATPP 135 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH--TTSCEEEEEESSCT
T ss_pred -----cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh--CCCCcEEEEeCCCC
Confidence 1123456778888888665554 345789999999999997 4444444444444432 34789999999998
Q ss_pred HHHHHHHhhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecch
Q psy15524 588 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 667 (930)
Q Consensus 588 ~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~ 667 (930)
+.+..+... ..|+. ... ...+. .+...+...+.. .++++||||+++
T Consensus 136 ~~~~~~~~~--~~~i~-~~~----------------------~~~~~-~~~~~~~~~l~~--------~~~~~lVF~~~~ 181 (431)
T 2v6i_A 136 GTTEAFPPS--NSPII-DEE----------------------TRIPD-KAWNSGYEWITE--------FDGRTVWFVHSI 181 (431)
T ss_dssp TCCCSSCCC--SSCCE-EEE----------------------CCCCS-SCCSSCCHHHHS--------CSSCEEEECSSH
T ss_pred cchhhhcCC--CCcee-ecc----------------------ccCCH-HHHHHHHHHHHc--------CCCCEEEEeCCH
Confidence 732211110 00100 000 00011 111111222322 156899999999
Q ss_pred hhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccE----------------
Q psy15524 668 DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDW---------------- 731 (930)
Q Consensus 668 ~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~---------------- 731 (930)
+.++.+++.|++. +..+..+||+ +|..++++|++|+.+|||||+++++|+|+| +.+
T Consensus 182 ~~~~~l~~~L~~~---~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~ 253 (431)
T 2v6i_A 182 KQGAEIGTCLQKA---GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGR 253 (431)
T ss_dssp HHHHHHHHHHHHT---TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTE
T ss_pred HHHHHHHHHHHHc---CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccc
Confidence 9999999999886 7788899997 578899999999999999999999999999 544
Q ss_pred -EEEecCCCChhhHHhhhcccccCCC-CceEEEEe
Q psy15524 732 -IVQYTAPSSSTDYVHRVGRTARVGH-EGSSLLFL 764 (930)
Q Consensus 732 -VI~~~~p~s~~~y~qr~GRagR~g~-~g~~~~~~ 764 (930)
||+++.|.+..+|+||+||+||.|. .|.++++.
T Consensus 254 ~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 254 VSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred eeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6888999999999999999999986 45555555
No 53
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.6e-34 Score=305.27 Aligned_cols=208 Identities=25% Similarity=0.441 Sum_probs=181.2
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCC
Q psy15524 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463 (930)
Q Consensus 386 ~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~ 463 (930)
.....+|+++ +|++.+++.|.+ +||..||++|.++||.++.| +|++++||||||||++|++|+++.+.. .
T Consensus 88 ~~~~~~f~~l-~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~ 159 (300)
T 3fmo_B 88 LYSVKSFEEL-RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------A 159 (300)
T ss_dssp CCCCCCSGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------T
T ss_pred cCCcCCHhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------c
Confidence 4455789999 999999999985 89999999999999999997 999999999999999999999988754 2
Q ss_pred CCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccc
Q psy15524 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKV 543 (930)
Q Consensus 464 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l 543 (930)
..++++|||+|||+||.|+++.+..+.............||....... ..+++|+|+|||+|++++.+...+.++++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 456789999999999999999999998876666777778876543221 45789999999999999987667788999
Q ss_pred eEEEEecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 544 EHLVLDEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 544 ~~lVlDEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
++|||||||++++ .||...+..|+..++ +.+|+++||||+++.+..++..++.+|..|.+.
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~---~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLP---RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSC---TTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCC---CCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999999999998 688888888776664 478999999999999999999999999998764
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.3e-33 Score=291.56 Aligned_cols=211 Identities=31% Similarity=0.502 Sum_probs=186.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|++++||||||||++|++|++..+.... ...+..++++
T Consensus 29 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~-~~~~~~~~~~ 105 (242)
T 3fe2_A 29 LNFYEA-NFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP-FLERGDGPIC 105 (242)
T ss_dssp SSTTTT-TCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCCTTCCCSE
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc-ccccCCCCEE
Confidence 468888 899999999985 8999999999999999999999999999999999999999999987532 1223457889
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.++++....+ .....++||.........+..+++|+|+|||+|.+++.+ ....+++++++|+|
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViD 183 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLD 183 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEET
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEe
Confidence 9999999999999999999887654 456778899888888888888999999999999999876 44578999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccC
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~ 608 (930)
|||+++++||...+..+++.++ +.+|+++||||+++.+..++..++.+|+.|.+..
T Consensus 184 Eah~l~~~~~~~~~~~i~~~~~---~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 184 EADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp THHHHHHTTCHHHHHHHHTTSC---SSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred CHHHHhhhCcHHHHHHHHHhCC---ccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999998877664 4789999999999999999999999999998754
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=285.68 Aligned_cols=205 Identities=33% Similarity=0.571 Sum_probs=182.7
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+ +||..|+++|.++++.+++|+|++++||||||||++|++|+++.+... ..+.++
T Consensus 43 ~~f~~l-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~ 114 (249)
T 3ber_A 43 KTFKDL-GVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFA 114 (249)
T ss_dssp CCTGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCE
T ss_pred CCHHHc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceE
Confidence 569999 999999999974 899999999999999999999999999999999999999999988762 346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.++++....+ .....+.||.....+...+..+++|+|+|||++.+++.+...+.+.+++++|+|
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 9999999999999999999876544 356678888887777777788999999999999999887666678999999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
|||++.+++|...+..++..++ +.+|+++||||+++.+.++++.++.+|..+.+
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~---~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIP---RDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSC---SSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ChhhhhccChHHHHHHHHHhCC---CCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999888877664 37899999999999999999999999998865
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4.3e-33 Score=330.97 Aligned_cols=323 Identities=17% Similarity=0.181 Sum_probs=187.6
Q ss_pred CCCCHHHHHhHHhhhc----C-CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH-HHH
Q psy15524 413 TQVTTVQQLSIQPILD----G-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL-EIF 486 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~----~-~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~-~~~ 486 (930)
..++|+|.++++.++. + +++++++|||||||++++..+...+...........+.++|||+||++|+.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3799999999999886 4 569999999999999965444443332111111125788999999999999998 666
Q ss_pred HHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhcc---CCcccccceEEEEecchhhhhcCcHHHH
Q psy15524 487 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT---ETLKFSKVEHLVLDEADRILDQGYERDI 563 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~---~~~~~~~l~~lVlDEah~l~~~g~~~~l 563 (930)
+.+.. ....+.++. ...+.+|+|+||++|..+.... ..+....+++||+||||++...+ ...+
T Consensus 257 ~~~~~-----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 257 TPFGD-----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp TTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred Hhcch-----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 65432 122233221 2346899999999998775421 23445779999999999997643 2344
Q ss_pred HHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEE------------------EEccCCCCcccCc-cc--e-ec
Q psy15524 564 AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ------------------IDAADSTDIHNTT-DS--L-VI 621 (930)
Q Consensus 564 ~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~------------------i~~~~~~~~~~~~-~~--~-~~ 621 (930)
..++..++ ..++++||||+......-....+..++. +.+.......... .. . ..
T Consensus 323 ~~il~~~~----~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
T 3h1t_A 323 REILEYFE----PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRF 398 (590)
T ss_dssp HHHHHHST----TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-------------
T ss_pred HHHHHhCC----cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccc
Confidence 55555554 4689999999874322111112222211 1111000000000 00 0 00
Q ss_pred CCCceEEEEEcCc-------hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC-----CCceEEE
Q psy15524 622 PDSLKQHFIVTPP-------KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG-----ENIAFFK 689 (930)
Q Consensus 622 ~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~-----~~~~~~~ 689 (930)
...+......... ..+...+...+....... ...+++||||+++++++.+++.|.+... .+-.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~--~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 399 GREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT--DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ----------CCSHHHHHHHHHTHHHHHHHHHHHHHHH--CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc--CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 0000000000000 112233333333222211 2257999999999999999999987532 1223677
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCc---EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCC
Q psy15524 690 LHGSMSQSERTEVFKTFRSVKSG---VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756 (930)
Q Consensus 690 lhg~~~~~~R~~v~~~F~~~~~~---vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 756 (930)
+||++++ +|..++++|++|+.+ |||||+++++|+|+|++++||++++|.++..|+||+||+||.+.
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 8999864 799999999998866 89999999999999999999999999999999999999999875
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=286.16 Aligned_cols=208 Identities=31% Similarity=0.471 Sum_probs=172.7
Q ss_pred CCCCC-CCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCee
Q psy15524 390 TSYEE-FPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468 (930)
Q Consensus 390 ~~f~~-l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~ 468 (930)
.+|++ + ++++.+.+.+.+ +||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+...........+.+
T Consensus 19 ~~f~~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 96 (228)
T 3iuy_A 19 CRFKDAF-QQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPG 96 (228)
T ss_dssp CSHHHHH-TTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCS
T ss_pred hhHhhhh-ccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCc
Confidence 45777 5 899999999985 79999999999999999999999999999999999999999998764322222346788
Q ss_pred EEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 469 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
+||++||++|+.|+++.+.++.. .......++||.........+.++++|+|+|||++.+++.. ....+++++++|+
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lVi 173 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVI 173 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEE
Confidence 99999999999999999999863 34556777888877777777888999999999999998766 4566889999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEE
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~ 605 (930)
||||++++++|...+..++..++ ++.|++++|||+++.+..++..++.+|..+.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVR---PDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSC---SSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCC---cCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999998887764 4789999999999999999999999998775
No 58
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.1e-32 Score=277.01 Aligned_cols=203 Identities=33% Similarity=0.547 Sum_probs=180.5
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||||||++|++|+++.+.. ...+.++
T Consensus 3 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~ 74 (206)
T 1vec_A 3 NEFEDY-CLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQA 74 (206)
T ss_dssp SSGGGS-CCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeE
Confidence 469999 899999999984 89999999999999999999999999999999999999999987643 2356789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+.++....+...+..+.||.....+...+..+++|+|+||+++.+.+.+ ....+.+++++|+|
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViD 153 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLD 153 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEE
Confidence 99999999999999999999877656677788899888777777778899999999999988876 44567899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEE
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i 604 (930)
|||++.+.+|...+..++..++. ..|++++|||+++.+.+++..++.+|..+
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLPK---NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCT---TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ChHHhHhhCcHHHHHHHHHhCCc---cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999888877753 78999999999999999999999998765
No 59
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=288.56 Aligned_cols=209 Identities=37% Similarity=0.629 Sum_probs=179.3
Q ss_pred cCCCCCCCCCC-CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCC
Q psy15524 386 LFAPTSYEEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK 464 (930)
Q Consensus 386 ~~~~~~f~~l~-~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~ 464 (930)
.+...+|++++ .+++.+++.+.+ +||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+..... ...
T Consensus 48 ~~~~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~--~~~ 124 (262)
T 3ly5_A 48 AFEDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF--MPR 124 (262)
T ss_dssp BSGGGCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC--CGG
T ss_pred ccccCChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc--ccc
Confidence 34456788882 389999999985 89999999999999999999999999999999999999999998876321 123
Q ss_pred CCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccce
Q psy15524 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVE 544 (930)
Q Consensus 465 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~ 544 (930)
.+.++||++||++||.|+++.+++++...+ .....++||.....+...+..+++|+|+|||++.+++.....+.+++++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~ 203 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHV-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQ 203 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCC-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCC
Confidence 477899999999999999999999987654 4567788888888888888888999999999999999876667789999
Q ss_pred EEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCC
Q psy15524 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601 (930)
Q Consensus 545 ~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~ 601 (930)
++|+||||+++++||...+..++..++. .+|+++||||+++.+.++++..++++
T Consensus 204 ~lViDEah~l~~~~~~~~l~~i~~~~~~---~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 204 CLVIDEADRILDVGFEEELKQIIKLLPT---RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHHSCS---SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred EEEEcChHHHhhhhHHHHHHHHHHhCCC---CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999887754 78999999999999999999888754
No 60
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.6e-32 Score=307.08 Aligned_cols=250 Identities=30% Similarity=0.444 Sum_probs=207.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|||+|+++||.+++|+|++++||||||||++|++|+++.+...... ....++++|||+||++|+.|++++++++
T Consensus 74 ~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998764322 1234678999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+..++||.....+...+..+++|+|+||++|.+++.+ ..+.+.++++||+||||+|++++|++++..++..
T Consensus 153 ~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 153 AFESY-LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp TTTSS-CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred hccCC-cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 86544 677788999988888888888999999999999999876 5567899999999999999999999988887764
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+.. . +.+|+++||||++.
T Consensus 231 ~~~-~-------------------------------------------------------------~~~q~l~~SAT~~~ 248 (434)
T 2db3_A 231 VTM-R-------------------------------------------------------------PEHQTLMFSATFPE 248 (434)
T ss_dssp TTS-C-------------------------------------------------------------SSCEEEEEESCCCH
T ss_pred cCC-C-------------------------------------------------------------CCceEEEEeccCCH
Confidence 421 1 12377777888878
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+..++..++.++..+...... .....+.+.+..+....|...|..++.. . ..++||||++++
T Consensus 249 ~~~~~~~~~l~~~~~i~~~~~~---------~~~~~i~~~~~~~~~~~k~~~l~~~l~~-------~-~~~~lVF~~t~~ 311 (434)
T 2db3_A 249 EIQRMAGEFLKNYVFVAIGIVG---------GACSDVKQTIYEVNKYAKRSKLIEILSE-------Q-ADGTIVFVETKR 311 (434)
T ss_dssp HHHHHHHTTCSSCEEEEESSTT---------CCCTTEEEEEEECCGGGHHHHHHHHHHH-------C-CTTEEEECSSHH
T ss_pred HHHHHHHHhccCCEEEEecccc---------ccccccceEEEEeCcHHHHHHHHHHHHh-------C-CCCEEEEEeCcH
Confidence 8888888888888777654432 2245688888888888899999988843 2 234999999999
Q ss_pred chhhhHHHHhhh
Q psy15524 321 MADYHTELLSTK 332 (930)
Q Consensus 321 ~~~~l~~~L~~~ 332 (930)
.|+.++..|+..
T Consensus 312 ~a~~l~~~L~~~ 323 (434)
T 2db3_A 312 GADFLASFLSEK 323 (434)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.7e-32 Score=281.27 Aligned_cols=204 Identities=23% Similarity=0.332 Sum_probs=178.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+ +||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+.. ...+.++
T Consensus 24 ~~f~~l-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------~~~~~~~ 95 (230)
T 2oxc_A 24 ADFESL-LLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ENLSTQI 95 (230)
T ss_dssp CCGGGG-TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCceE
Confidence 579999 899999999975 89999999999999999999999999999999999999999988754 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.++++........+..+.||.....+... ..+++|+|+|||++.+++.. ..+.+.+++++|+|
T Consensus 96 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViD 173 (230)
T 2oxc_A 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR-LKKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILD 173 (230)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH-TTSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh-ccCCCEEEECHHHHHHHHhc-CCcccccCCEEEeC
Confidence 99999999999999999998876655667778888776555443 35799999999999998875 45667899999999
Q ss_pred cchhhhhcC-cHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 550 EADRILDQG-YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 550 Eah~l~~~g-~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
|||+++++| |...+..++..++. ..|++++|||+++.+.+++..++.+|..+.+
T Consensus 174 Eah~~~~~~~~~~~~~~i~~~~~~---~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 174 EADKLLEEGSFQEQINWIYSSLPA---SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SHHHHHSTTSSHHHHHHHHHHSCS---SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CchHhhcCcchHHHHHHHHHhCCC---CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999999998 99999888877753 7899999999999999999999999988764
No 62
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=5.6e-31 Score=303.52 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=116.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH
Q psy15524 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481 (930)
Q Consensus 402 ~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q 481 (930)
+.++-...+|+ .|+++|..++|.+++|+ +++|+||||||++|.+|++..... |..++|++||++||.|
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Q 135 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARR 135 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHH
Confidence 34455556899 99999999999999998 999999999999999999755432 5679999999999999
Q ss_pred HHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhH-HHhhhccC-----Ccccc---cceEEEEecch
Q psy15524 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHTE-----TLKFS---KVEHLVLDEAD 552 (930)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl-~~~l~~~~-----~~~~~---~l~~lVlDEah 552 (930)
.++.+..++..++ +.+++++||.+. +.++...+++|+|+|||+| .++++..- .+.++ ++.++|+||||
T Consensus 136 dae~m~~l~~~lG-Lsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 136 DAEWMGPVYRGLG-LSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp HHHHHHHHHHTTT-CCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred HHHHHHHHHHhcC-CeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 9999999998765 567788998764 3344556899999999999 88887642 34577 89999999999
Q ss_pred hhh
Q psy15524 553 RIL 555 (930)
Q Consensus 553 ~l~ 555 (930)
+++
T Consensus 213 smL 215 (997)
T 2ipc_A 213 SIL 215 (997)
T ss_dssp HHT
T ss_pred HHH
Confidence 987
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-32 Score=281.26 Aligned_cols=207 Identities=29% Similarity=0.487 Sum_probs=178.3
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+++|.++++.+++|+|++++||||||||++|++|+++.+.. ...+.++
T Consensus 4 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~ 75 (219)
T 1q0u_A 4 TQFTRF-PFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQA 75 (219)
T ss_dssp CCGGGS-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CCHhhC-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceE
Confidence 569999 899999999975 89999999999999999999999999999999999999999988754 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCC---CcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFT---WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~---~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
||++||++|+.|+++.+.++..... ......+.||.........+..+++|+|+|||++.+++.+ ....+.+++++
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~l 154 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHIL 154 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEE
Confidence 9999999999999999999886552 3456677888765554444456789999999999998876 45668899999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccC
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~ 608 (930)
|+||||++.+++|...+..++..++ +..|++++|||+++.+.++++.++.+|..+.+..
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~---~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMP---KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSC---TTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEcCchHHhhhChHHHHHHHHHhCC---cccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999999999999988888877664 3789999999999999999999999999887643
No 64
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.98 E-value=9.7e-32 Score=283.51 Aligned_cols=216 Identities=32% Similarity=0.465 Sum_probs=182.6
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcc---cCCCCC
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---ISRKDG 466 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~---~~~~~~ 466 (930)
.+|+++ ++++.+.++|. .+||..|+|+|.++++.+++|+|++++||||||||++|++|+++.+...... .....+
T Consensus 23 ~~f~~l-~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 23 ENFDEL-KLDPTIRNNIL-LASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CSSGGG-SCCCSTTTTTT-TTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred CCHhhC-CCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 469999 89999999997 5899999999999999999999999999999999999999999988753211 112345
Q ss_pred eeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEE
Q psy15524 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546 (930)
Q Consensus 467 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~l 546 (930)
+++||++||++|+.|+++.+.++....+ .....+.||.....+...+..+++|+|+||++|.+++.. ....+++++++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~l 178 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYI 178 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEE
Confidence 7899999999999999999999876543 455677888888877778888899999999999999876 44568899999
Q ss_pred EEecchhhhhcCcHHHHHHHHHHHhhc-CccceEEEEccccCHHHHHHHhhhcCCCEEEEccCC
Q psy15524 547 VLDEADRILDQGYERDIAEFLEILKKQ-KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADS 609 (930)
Q Consensus 547 VlDEah~l~~~g~~~~l~~i~~~l~~~-~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 609 (930)
|+||||++++++|...+..++..+... ....|+++||||+++.+.++++.++.+|..+.+...
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 999999999999999999888754321 126799999999999999999999999999877543
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.98 E-value=2.1e-31 Score=277.90 Aligned_cols=209 Identities=40% Similarity=0.604 Sum_probs=179.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+ +||..|+++|.++++.+++|+|++++||||||||++|++|+++.+..... ....+.++
T Consensus 25 ~~f~~~-~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~~ 100 (236)
T 2pl3_A 25 TRFSDF-PLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGLGV 100 (236)
T ss_dssp SBGGGS-CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCCCE
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCceE
Confidence 469999 899999999985 89999999999999999999999999999999999999999998875321 12357789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+++++...+ ..+..++||.....+...+ .+++|+|+|||++.+++.....+.+.+++++|+|
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHD-FSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSS-CCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCC-eeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 9999999999999999999876543 4566778887766555544 5799999999999998877555678899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
|||++.+++|...+..++..++ +.+|++++|||+++.+.++++.++.+|..+.+.
T Consensus 179 Eah~~~~~~~~~~~~~i~~~~~---~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 179 EADRILDMGFADTMNAVIENLP---KKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp THHHHHHTTTHHHHHHHHHTSC---TTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ChHHHhcCCcHHHHHHHHHhCC---CCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999998888877765 378999999999999999999999999988764
No 66
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.98 E-value=1.1e-31 Score=279.75 Aligned_cols=205 Identities=28% Similarity=0.477 Sum_probs=168.2
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+++|.++++.+++|+|++++||||||||++|++|+++.+.. ...+.++
T Consensus 30 ~~f~~l-~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~~~ 101 (237)
T 3bor_A 30 DNFDDM-NLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKETQA 101 (237)
T ss_dssp CSGGGS-CCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSCCE
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCceE
Confidence 569999 899999999974 89999999999999999999999999999999999999999988753 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcC-CcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
||++||++|+.|+++.+++++...+ .....+.||.....+...+..+ ++|+|+|||++.+++.+ ....+.+++++|+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lVi 179 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVL 179 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEE
T ss_pred EEEECcHHHHHHHHHHHHHHhhhcC-ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEE
Confidence 9999999999999999999876544 3456677887766666666555 89999999999998876 4456788999999
Q ss_pred ecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEcc
Q psy15524 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607 (930)
Q Consensus 549 DEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~ 607 (930)
||||++++++|...+..++..++ +..|++++|||+++.+.+++..++.+|..+.+.
T Consensus 180 DEah~~~~~~~~~~l~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 180 DEADEMLSRGFKDQIYEIFQKLN---TSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHSC---TTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCchHhhccCcHHHHHHHHHhCC---CCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999988888877764 478999999999999999999999999888653
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=3.9e-31 Score=270.05 Aligned_cols=204 Identities=34% Similarity=0.555 Sum_probs=178.9
Q ss_pred CCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEE
Q psy15524 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470 (930)
Q Consensus 391 ~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~l 470 (930)
+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.+|||||||++|++|+++.+.... ....+.++|
T Consensus 2 ~f~~~-~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~---~~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDF-PLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRAL 76 (207)
T ss_dssp CGGGS-CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC---CTTCCCSEE
T ss_pred Chhhc-CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc---ccCCCCcEE
Confidence 58999 899999999985 8999999999999999999999999999999999999999998875421 124578899
Q ss_pred EEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEec
Q psy15524 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 550 (930)
Q Consensus 471 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDE 550 (930)
|++||++|+.|+++.+.+++.. .....+.||.........+..+++|+|+||+++.+++.. ....+.+++++|+||
T Consensus 77 il~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDE 152 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEES
T ss_pred EEECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEC
Confidence 9999999999999999998754 345677888887777777778999999999999998876 456688999999999
Q ss_pred chhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEc
Q psy15524 551 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606 (930)
Q Consensus 551 ah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~ 606 (930)
||++.+++|...+..++..++ +..|++++|||+++.+.++++.++.+|..+.+
T Consensus 153 ah~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSATP---PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTSC---TTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhHhhccchHHHHHHHHHhCC---ccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999998888876654 47899999999999999999999999988765
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=8.1e-31 Score=270.33 Aligned_cols=204 Identities=25% Similarity=0.480 Sum_probs=175.5
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.|.+ +||..|+|+|.++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++
T Consensus 14 ~~f~~~-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~ 85 (220)
T 1t6n_A 14 SGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSV 85 (220)
T ss_dssp CCSTTS-CCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCE
T ss_pred CCHhhc-CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEE
Confidence 469999 999999999985 89999999999999999999999999999999999999999987643 1345689
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhc-CCcEEEECchhHHHhhhccCCcccccceEEEE
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVL 548 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~-~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVl 548 (930)
||++||++|+.|+++.++++....+...+..+.||.........+.. .++|+|+||+++.+++.+ ....+.+++++|+
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lVi 164 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFIL 164 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEE
Confidence 99999999999999999999876655677788888877666665554 479999999999998876 4556889999999
Q ss_pred ecchhhhh-cCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEE
Q psy15524 549 DEADRILD-QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605 (930)
Q Consensus 549 DEah~l~~-~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~ 605 (930)
||||++++ .+|...+..++..++ ...|++++|||+++.+.++++.++.+|..+.
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTP---HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSC---SSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCC---CcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999987 577777777765543 4789999999999999999999999998775
No 69
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=1.5e-30 Score=269.28 Aligned_cols=205 Identities=28% Similarity=0.511 Sum_probs=169.1
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeE
Q psy15524 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469 (930)
Q Consensus 390 ~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~ 469 (930)
.+|+++ ++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.+|||||||++|++|+++.+.. ...+.++
T Consensus 14 ~~f~~l-~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~~ 85 (224)
T 1qde_A 14 YKFDDM-ELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQA 85 (224)
T ss_dssp CCGGGG-TCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCE
T ss_pred CChhhc-CCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCceE
Confidence 469999 899999999985 79999999999999999999999999999999999999999988754 2346789
Q ss_pred EEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEe
Q psy15524 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549 (930)
Q Consensus 470 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlD 549 (930)
||++||++|+.|+++.+.++....+ .....+.||.........+ ..++|+|+||+++.+++.+ ....+.+++++|+|
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViD 162 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILD 162 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECC----------C-TTCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHhcC-CCCCEEEECHHHHHHHHHh-CCcchhhCcEEEEc
Confidence 9999999999999999999876543 4456677776655444433 3489999999999988876 45668899999999
Q ss_pred cchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccC
Q psy15524 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608 (930)
Q Consensus 550 Eah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~ 608 (930)
|||++.+++|...+..++..++ +..|++++|||+++.+.++++.++.+|..+.+..
T Consensus 163 Eah~~~~~~~~~~l~~i~~~~~---~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 163 EADEMLSSGFKEQIYQIFTLLP---PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp THHHHHHTTCHHHHHHHHHHSC---TTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred ChhHHhhhhhHHHHHHHHHhCC---ccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999998888877764 4789999999999999999999999999887643
No 70
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=3.2e-30 Score=318.91 Aligned_cols=329 Identities=18% Similarity=0.176 Sum_probs=220.7
Q ss_pred CCCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 413 TQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..|+|+|.+++..++.. .+++++++||+|||++++..+...+.. +...++|||||+ .|+.||.+.+.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 47899999999988864 479999999999999988777766643 334579999999 99999999997766
Q ss_pred ccCCCcceEEEeCCCchHHHHH---HHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcH-HHHHHH
Q psy15524 491 KSFTWIVPSWLTGGEKMKSEKA---RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEF 566 (930)
Q Consensus 491 ~~~~~~~~~~~~gg~~~~~~~~---~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~-~~l~~i 566 (930)
. .....+ ++........ ......+|+|+|++.+.........+...++++||+||||++.+.+.. ......
T Consensus 224 ~----l~v~v~-~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 224 N----LRFALF-DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp C----CCCEEC-CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred C----CCEEEE-ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 3 122222 3322211111 111247899999998864432222244567999999999999765422 112333
Q ss_pred HHHHhhcCccceEEEEccccCH-H---HHHHHhh----------------------------hcCCCEEEEccCCCCccc
Q psy15524 567 LEILKKQKPQFQSILLSATLTP-A---VQRLAGM----------------------------TLQNPIQIDAADSTDIHN 614 (930)
Q Consensus 567 ~~~l~~~~~~~q~vl~SAT~~~-~---~~~l~~~----------------------------~~~~~~~i~~~~~~~~~~ 614 (930)
+..+.. ...+++++|||+.. . +..+... .... .............
T Consensus 299 l~~L~~--~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~-~~~~~~~~~~L~~ 375 (968)
T 3dmq_A 299 IEQLAE--HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAG-NKLSNDELNMLGE 375 (968)
T ss_dssp HHHHHT--TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTS-CCCCGGGTTSSTT
T ss_pred HHHHhh--cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhcc-CCCCHHHHHHHHH
Confidence 344432 24468999999842 0 1111110 0000 0000000000000
Q ss_pred ----------------------------------------------CccceecCCCceEEE-------------------
Q psy15524 615 ----------------------------------------------TTDSLVIPDSLKQHF------------------- 629 (930)
Q Consensus 615 ----------------------------------------------~~~~~~~~~~~~~~~------------------- 629 (930)
.......|......+
T Consensus 376 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~ 455 (968)
T 3dmq_A 376 MIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMG 455 (968)
T ss_dssp TTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTT
T ss_pred HhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhh
Confidence 000000011001111
Q ss_pred ---------------------------EEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcC
Q psy15524 630 ---------------------------IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682 (930)
Q Consensus 630 ---------------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~ 682 (930)
..+....|...+..++.. ..+.++||||++++.++.+++.|....
T Consensus 456 ~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-------~~~~k~iVF~~~~~~~~~l~~~L~~~~- 527 (968)
T 3dmq_A 456 ARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-------HRSQKVLVICAKAATALQLEQVLRERE- 527 (968)
T ss_dssp CCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-------TSSSCCCEECSSTHHHHHHHHHHHTTT-
T ss_pred hhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-------CCCCCEEEEeCcHHHHHHHHHHHHHHc-
Confidence 112233456666666654 127899999999999999999998532
Q ss_pred CCceEEEecCCCCHHHHHHHHHHhhcCC--CcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceE
Q psy15524 683 ENIAFFKLHGSMSQSERTEVFKTFRSVK--SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760 (930)
Q Consensus 683 ~~~~~~~lhg~~~~~~R~~v~~~F~~~~--~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~ 760 (930)
|+.+..+||+|++.+|..+++.|++|+ .+|||||+++++|+|+|++++||++|+|.++..|+||+||+||.|+.|.+
T Consensus 528 -g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v 606 (968)
T 3dmq_A 528 -GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDI 606 (968)
T ss_dssp -CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCC
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceE
Confidence 788899999999999999999999998 99999999999999999999999999999999999999999999999977
Q ss_pred EEEeCc
Q psy15524 761 LLFLIP 766 (930)
Q Consensus 761 ~~~~~~ 766 (930)
+++...
T Consensus 607 ~v~~~~ 612 (968)
T 3dmq_A 607 QIHVPY 612 (968)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 766543
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=272.31 Aligned_cols=209 Identities=27% Similarity=0.452 Sum_probs=168.2
Q ss_pred CCCCCC---CCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCe
Q psy15524 391 SYEEFP---GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467 (930)
Q Consensus 391 ~f~~l~---~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 467 (930)
+|+++. ++++.+.+.+.+ +||..|+|+|.++++.+++|+|+++.||||||||++|++|+++.+... ...+.
T Consensus 26 ~f~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~~ 99 (245)
T 3dkp_A 26 TFQQLDQEYKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-----ANKGF 99 (245)
T ss_dssp SHHHHHHHHCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----CSSSC
T ss_pred CHHHhhhccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----ccCCc
Confidence 455542 799999999985 899999999999999999999999999999999999999999888541 23577
Q ss_pred eEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHH-HHHHhcCCcEEEECchhHHHhhhccC-CcccccceE
Q psy15524 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE-KARIRKGISILVATPGRLLDHCKHTE-TLKFSKVEH 545 (930)
Q Consensus 468 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~-~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~~~~~l~~ 545 (930)
++||++||++|+.|+++.+.+++...+. ....+.|+...... ......+++|+|+|||++.+++.... .+.+.++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGTGF-RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCC-CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCc-eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 8999999999999999999998875543 33334443221111 11123568999999999999987643 467889999
Q ss_pred EEEecchhhhhc---CcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHhhhcCCCEEEEccC
Q psy15524 546 LVLDEADRILDQ---GYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608 (930)
Q Consensus 546 lVlDEah~l~~~---g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~~~i~~~~ 608 (930)
+|+||||+++++ +|...+..++..+. .+..|+++||||+++.+.++++.++.+|+.+.+..
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACT--SHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCC--CTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcC--CCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999984 67777776655443 24789999999999999999999999999988754
No 72
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=285.77 Aligned_cols=254 Identities=30% Similarity=0.401 Sum_probs=199.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc------------CCCCCCeEEEEEcccHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK------------ISRKDGIYAVIILPTRE 68 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~------------~~~~~~~~~lvl~P~~~ 68 (930)
+||..|+|+|+++++.++.|+|++++||||+|||++|++|+++.+...... .....++++||++||++
T Consensus 33 ~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 489999999999999999999999999999999999999999988654321 01123467999999999
Q ss_pred HHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc
Q psy15524 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 148 (930)
Q Consensus 69 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~ 148 (930)
|+.|+++.+++++...+ +.+..++|+.....+...+..+++|+|+||++|.+++.. ..+.+.++++|||||||++.++
T Consensus 113 L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iViDEah~~~~~ 190 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDM 190 (417)
T ss_dssp HHHHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEESSHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CCcChhhCcEEEEEChhHhhcc
Confidence 99999999999876544 677788899888888888888899999999999998876 5567899999999999999999
Q ss_pred CcHHHHHHHHHHHhhc-CCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCc
Q psy15524 149 GYERDIAEFLEILKKQ-KPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 227 (930)
Q Consensus 149 ~~~~~~~~i~~~l~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (930)
+|...+..++...... ....
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~----------------------------------------------------------- 211 (417)
T 2i4i_A 191 GFEPQIRRIVEQDTMPPKGVR----------------------------------------------------------- 211 (417)
T ss_dssp TCHHHHHHHHTSSSCCCBTTB-----------------------------------------------------------
T ss_pred CcHHHHHHHHHhccCCCcCCc-----------------------------------------------------------
Confidence 9988887776532111 1123
Q ss_pred CceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccC
Q psy15524 228 QFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNED 307 (930)
Q Consensus 228 ~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 307 (930)
|.+++|||++..+..+...++.++..+...... ..+.++.+.+..++...|...+..++.. ..
T Consensus 212 --~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~l~~~l~~------~~ 274 (417)
T 2i4i_A 212 --HTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG---------STSENITQKVVWVEESDKRSFLLDLLNA------TG 274 (417)
T ss_dssp --EEEEEESCCCHHHHHHHHHHCSSCEEEEEC-------------CCSSEEEEEEECCGGGHHHHHHHHHHT------CC
T ss_pred --EEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC---------CCccCceEEEEEeccHhHHHHHHHHHHh------cC
Confidence 555555555555556666666666655443322 2346788888888888899988888843 23
Q ss_pred CcceEEEEEecccchhhhHHHHhhh
Q psy15524 308 EESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 308 ~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.++||||++++.++.++..|+..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~ 299 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE 299 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC
Confidence 5679999999999999999999764
No 73
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=2.6e-29 Score=262.84 Aligned_cols=193 Identities=33% Similarity=0.519 Sum_probs=164.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++.++.|+|+++++|||||||++|++|++..+...... ....++++||++||++|+.|+++.++++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-ERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-CTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-ccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998753321 2234678999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+..++|+.....+...+..+++|+|+||+++.+++.. ....+.++++|||||||++++++|+..+..++..
T Consensus 126 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 126 CRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHHTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred HhhcC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 87665 677888899888888888888899999999999999875 5567899999999999999999999888877654
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. ..|+++||||+++
T Consensus 204 ~~~----------------------------------------------------------------~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 204 IRP----------------------------------------------------------------DRQTLMWSATWPK 219 (242)
T ss_dssp SCS----------------------------------------------------------------SCEEEEEESCCCH
T ss_pred CCc----------------------------------------------------------------cceEEEEEeecCH
Confidence 422 2277777777778
Q ss_pred HHHHhhhccccCCeeeccCC
Q psy15524 241 AVQRLAGMTLQNPIQIDAAD 260 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~ 260 (930)
.+..++..++.+|+.+.+..
T Consensus 220 ~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 220 EVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHHHHCCCCEEEEecC
Confidence 88888888999998887654
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=8.6e-29 Score=288.41 Aligned_cols=318 Identities=16% Similarity=0.205 Sum_probs=207.8
Q ss_pred CCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..|+|+|.++++.+. .++++++.++||+|||++++..+ ..+.. .....++|||+|+ +|+.||.+++.+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~------~~~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKK------ENELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHH------TTCCSSEEEEECS-TTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHh------cCCCCCEEEEccH-HHHHHHHHHHHH
Confidence 379999999998764 57889999999999999965444 44433 1335679999995 699999999998
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHH
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~ 568 (930)
++.. ..+..+.|+... ....+.+|+|+||+.+..... +....+++||+||||++.+.+.. ....+.
T Consensus 108 ~~~~---~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~~--~~~~l~ 173 (500)
T 1z63_A 108 FAPH---LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQTK--IFKAVK 173 (500)
T ss_dssp HCTT---SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTSH--HHHHHH
T ss_pred HCCC---ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhHH--HHHHHH
Confidence 8643 233444444321 112457999999999865432 33456899999999999765421 223333
Q ss_pred HHhhcCccceEEEEccccCHH-HHHH---Hhhhc--------------------------------CCCEEEEccCCCCc
Q psy15524 569 ILKKQKPQFQSILLSATLTPA-VQRL---AGMTL--------------------------------QNPIQIDAADSTDI 612 (930)
Q Consensus 569 ~l~~~~~~~q~vl~SAT~~~~-~~~l---~~~~~--------------------------------~~~~~i~~~~~~~~ 612 (930)
.++ ..+.+++|||+... ..++ ..... -.|..+.......
T Consensus 174 ~l~----~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~- 248 (500)
T 1z63_A 174 ELK----SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK- 248 (500)
T ss_dssp TSC----EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH-
T ss_pred hhc----cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc-
Confidence 332 45679999998432 2211 11100 0111111110000
Q ss_pred ccCccceecCCCceEEEEEc--------------------------------------------------------Cchh
Q psy15524 613 HNTTDSLVIPDSLKQHFIVT--------------------------------------------------------PPKL 636 (930)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------~~~~ 636 (930)
......|.......... ....
T Consensus 249 ---~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~ 325 (500)
T 1z63_A 249 ---AIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSG 325 (500)
T ss_dssp ---HHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCH
T ss_pred ---chhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcch
Confidence 00001122211111111 1112
Q ss_pred hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC-CCc-EE
Q psy15524 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV-KSG-VL 714 (930)
Q Consensus 637 ~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~-~~~-vL 714 (930)
|...+...+..... .+.++||||.+.+.++.+.+.|.... +..+..+||++++.+|..++++|+++ ... +|
T Consensus 326 K~~~l~~~l~~~~~-----~~~k~lvF~~~~~~~~~l~~~l~~~~--~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil 398 (500)
T 1z63_A 326 KMIRTMEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKEL--NTEVPFLYGELSKKERDDIISKFQNNPSVKFIV 398 (500)
T ss_dssp HHHHHHHHHHHHHT-----TTCCEEEECSCHHHHHHHHHHHHHHH--TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCE
T ss_pred hHHHHHHHHHHHHc-----cCCcEEEEEehHHHHHHHHHHHHHhh--CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 33333333333221 36799999999999999999998743 45667789999999999999999998 454 79
Q ss_pred EeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEE--EeCcc
Q psy15524 715 ICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL--FLIPS 767 (930)
Q Consensus 715 v~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~--~~~~~ 767 (930)
+||+++++|+|+|++++||++|+|+++..|.||+||++|.|+.+.+.+ ++...
T Consensus 399 ~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 399 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999999999999999999999876643 44443
No 75
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=6.3e-29 Score=282.25 Aligned_cols=244 Identities=27% Similarity=0.452 Sum_probs=191.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++||++||++|+.|+++.++++
T Consensus 55 ~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------QVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh------ccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999987743 123567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+..+.|+.....+...+..+++|+|+||+++.+++.. ..+.+.++++||+||||++.+++|...+..++..
T Consensus 129 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~ 206 (410)
T 2j0s_A 129 GDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY 206 (410)
T ss_dssp TTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTT
T ss_pred hccCC-eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHh
Confidence 86554 677788899888888777878899999999999999876 5667889999999999999999988777665543
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+ ++..|++++|||+ +.
T Consensus 207 ~---~~~~~~i~~SAT~-------------------------------------------------------------~~ 222 (410)
T 2j0s_A 207 L---PPATQVVLISATL-------------------------------------------------------------PH 222 (410)
T ss_dssp S---CTTCEEEEEESCC-------------------------------------------------------------CH
T ss_pred C---ccCceEEEEEcCC-------------------------------------------------------------CH
Confidence 3 2334555555554 44
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcc-hhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.+..+...++.++..+...... .....+.+.+..++.. .|...+..++.. ....++||||+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~-------~~~~~~lVf~~~~ 286 (410)
T 2j0s_A 223 EILEMTNKFMTDPIRILVKRDE---------LTLEGIKQFFVAVEREEWKFDTLCDLYDT-------LTITQAVIFCNTK 286 (410)
T ss_dssp HHHTTGGGTCSSCEEECCCGGG---------CSCTTEEEEEEEESSTTHHHHHHHHHHHH-------HTSSEEEEECSSH
T ss_pred HHHHHHHHHcCCCEEEEecCcc---------ccCCCceEEEEEeCcHHhHHHHHHHHHHh-------cCCCcEEEEEcCH
Confidence 4555555666666665443322 2345677777776654 488888887733 3456999999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.++.++..|...
T Consensus 287 ~~~~~l~~~L~~~ 299 (410)
T 2j0s_A 287 RKVDWLTEKMREA 299 (410)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999764
No 76
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=2.1e-28 Score=299.29 Aligned_cols=330 Identities=14% Similarity=0.146 Sum_probs=214.9
Q ss_pred CCCCHHHHHhHHhhhc--------------CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 413 TQVTTVQQLSIQPILD--------------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~--------------~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
..|+|+|..|++.++. +++.++.++||||||+++ ++++..+.. .....++|||+|+++|
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL 342 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDL 342 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHH
Confidence 3599999999999876 368999999999999997 677655432 1234689999999999
Q ss_pred HHHHHHHHHHhhccCCCcceEEEeCCCchHHHHHHHh-cCCcEEEECchhHHHhhhccCC-cccccceEEEEecchhhhh
Q psy15524 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTET-LKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 479 a~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~-~~~~Ilv~Tp~rl~~~l~~~~~-~~~~~l~~lVlDEah~l~~ 556 (930)
+.|+.+.+..+... .+.++.+.......+. .+.+|+|+||++|..++..... ..+....+||+||||++..
T Consensus 343 ~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 343 DYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 99999999886542 1234555555555553 4689999999999987764321 2456789999999999764
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCHH--------HHHHHh-------------hhcCCCEEEEccCCCC-ccc
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTPA--------VQRLAG-------------MTLQNPIQIDAADSTD-IHN 614 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~--------~~~l~~-------------~~~~~~~~i~~~~~~~-~~~ 614 (930)
. .....|...+ +..++++||||+... ...+.+ ....-|..+....... ...
T Consensus 416 ~---~~~~~I~~~~----p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~ 488 (1038)
T 2w00_A 416 G---EAQKNLKKKF----KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKS 488 (1038)
T ss_dssp H---HHHHHHHHHC----SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHH
T ss_pred h---HHHHHHHHhC----CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhh
Confidence 3 2344454444 367999999998742 222221 1111122221111000 000
Q ss_pred -Ccc-ceecCCCceEEEEEcCchhhHHHHHHHHHhhccCC-----CcCCCceEEEEecchhhHHHHHHHHhhhcC-----
Q psy15524 615 -TTD-SLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV-----NEDEESKMLVFMATQDMADYHTELLSTVLG----- 682 (930)
Q Consensus 615 -~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~----- 682 (930)
..+ .......+.+... .....+...++..+..+.... ....+.++||||+|++.|..+++.|.+...
T Consensus 489 ~~~e~d~~~~~~i~~~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~ 567 (1038)
T 2w00_A 489 LETETDEKKLSAAENQQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANK 567 (1038)
T ss_dssp HHTCCCHHHHHHTCSTTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccc
Confidence 000 0000000000000 112334444444443322110 001246899999999999999999987641
Q ss_pred ----CCceE-EEecCC----------C----------CH-----------------------------HHHHHHHHHhhc
Q psy15524 683 ----ENIAF-FKLHGS----------M----------SQ-----------------------------SERTEVFKTFRS 708 (930)
Q Consensus 683 ----~~~~~-~~lhg~----------~----------~~-----------------------------~~R~~v~~~F~~ 708 (930)
.+..+ ..+||+ + ++ ..|..+.++|++
T Consensus 568 ~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~ 647 (1038)
T 2w00_A 568 SATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN 647 (1038)
T ss_dssp SSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT
T ss_pred ccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc
Confidence 12333 455653 2 22 148889999999
Q ss_pred CCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCC----ceEEEEeC
Q psy15524 709 VKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE----GSSLLFLI 765 (930)
Q Consensus 709 ~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~----g~~~~~~~ 765 (930)
|+.+|||+|+++.+|+|+|.+ .++.+|.|.+...|+|++||++|.+.. |..+.|+.
T Consensus 648 g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 648 QDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999999999 678899999999999999999999764 55554443
No 77
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=256.61 Aligned_cols=158 Identities=32% Similarity=0.487 Sum_probs=127.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|++..+...........+.++||++||++|+.|++++++++
T Consensus 38 ~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999998864332222235778999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
.. ....+..++|+.....+...+..+++|+|+||+++.+++.. ....+.++++|||||||++.+++|+..+..++..
T Consensus 118 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 118 SY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp CC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred cc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 62 33667778888887777777888899999999999998775 5567899999999999999999999988887765
Q ss_pred H
Q psy15524 161 L 161 (930)
Q Consensus 161 l 161 (930)
+
T Consensus 195 ~ 195 (228)
T 3iuy_A 195 V 195 (228)
T ss_dssp S
T ss_pred C
Confidence 5
No 78
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.96 E-value=5.3e-29 Score=267.86 Aligned_cols=186 Identities=25% Similarity=0.435 Sum_probs=155.4
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..||++|+++||.++.| +|++++||||||||++|++|+++.+.. ...++++|||+||++|+.|+++.++
T Consensus 110 ~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~------~~~~~~~lil~PtreLa~Q~~~~~~ 183 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYPQCLCLSPTYELALQTGKVIE 183 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc------cCCCceEEEEcCcHHHHHHHHHHHH
Confidence 68999999999999999987 999999999999999999999998754 2345679999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~i 157 (930)
.++..+..+.+....|+....... ..+++|+||||++|++++.+.+.+.++++++|||||||+|++ .+|...+..+
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i 260 (300)
T 3fmo_B 184 QMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260 (300)
T ss_dssp HHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHH
T ss_pred HHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHH
Confidence 998876667777788776544322 456899999999999999776777889999999999999998 6787777666
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
+..++. ..|+++||||
T Consensus 261 ~~~~~~----------------------------------------------------------------~~q~i~~SAT 276 (300)
T 3fmo_B 261 QRMLPR----------------------------------------------------------------NCQMLLFSAT 276 (300)
T ss_dssp HTTSCT----------------------------------------------------------------TCEEEEEESC
T ss_pred HHhCCC----------------------------------------------------------------CCEEEEEecc
Confidence 544321 2378888888
Q ss_pred cchHHHHhhhccccCCeeeccC
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAA 259 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~ 259 (930)
++..+..++..++.+|..|.+.
T Consensus 277 ~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 277 FEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCHHHHHHHHHHCCCCeEEEec
Confidence 8888889999999999887653
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=253.86 Aligned_cols=187 Identities=36% Similarity=0.586 Sum_probs=159.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+... ..+.++||++||++|+.|+++.++++
T Consensus 61 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET------PQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------CCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC------CCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988762 23567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+..+.|+.....+...+..+++|+|+||+++.+.+.+...+.+.++++||+||||++.+++|+..+..++..
T Consensus 135 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~ 213 (249)
T 3ber_A 135 GSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKV 213 (249)
T ss_dssp HGGGT-CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHS
T ss_pred hccCC-eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHh
Confidence 87655 67778888888777777778889999999999999987656667899999999999999999998888777654
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. ..|.++||||++.
T Consensus 214 ~~~----------------------------------------------------------------~~~~l~~SAT~~~ 229 (249)
T 3ber_A 214 IPR----------------------------------------------------------------DRKTFLFSATMTK 229 (249)
T ss_dssp SCS----------------------------------------------------------------SSEEEEEESSCCH
T ss_pred CCC----------------------------------------------------------------CCeEEEEeccCCH
Confidence 421 1267777777777
Q ss_pred HHHHhhhccccCCeeecc
Q psy15524 241 AVQRLAGMTLQNPIQIDA 258 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~ 258 (930)
.++.+++.++.+|..+.+
T Consensus 230 ~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 230 KVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHCCCCEEEEe
Confidence 788888888888887754
No 80
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=256.98 Aligned_cols=171 Identities=40% Similarity=0.692 Sum_probs=143.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+++|+++++.++.|+|++++||||||||++|++|+++.+...+.. ...+.++||++||++|+.|+++.++++
T Consensus 72 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998763321 124677999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ ..+..+.|+.........+..+++|+|+||+++.+++.....+.+.++++|||||||++++++|+..+..++..
T Consensus 150 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 150 MTHHV-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TTTCC-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred HhhcC-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 87655 66777888888877777777789999999999999888766677899999999999999999999998888776
Q ss_pred HhhcCCCceEEEEEeec
Q psy15524 161 LKKQKPQFQSILLSATL 177 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~ 177 (930)
++. .+|+++||||+
T Consensus 229 ~~~---~~q~l~~SAT~ 242 (262)
T 3ly5_A 229 LPT---RRQTMLFSATQ 242 (262)
T ss_dssp SCS---SSEEEEECSSC
T ss_pred CCC---CCeEEEEEecC
Confidence 642 23444444444
No 81
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=1.1e-27 Score=283.32 Aligned_cols=266 Identities=29% Similarity=0.431 Sum_probs=191.2
Q ss_pred CCCccCcHHHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~--~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||.+|+|+|+++++.++ .|+|++++||||+|||++|++|+++.+...... ...++++|||+||++|+.|+++.++
T Consensus 39 ~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lvl~Ptr~La~Q~~~~~~ 116 (579)
T 3sqw_A 39 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTRDLALQIEAEVK 116 (579)
T ss_dssp TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--ccCCCeEEEEcchHHHHHHHHHHHH
Confidence 689999999999999999 788999999999999999999999998774322 2345689999999999999999999
Q ss_pred HHhhh---cCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH
Q psy15524 79 KLCKS---FTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 79 ~~~~~---~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
+++.. .....+....|+.....+...+. .+++|+|+||++|.+++.......++.+++|||||||++++++|++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~ 196 (579)
T 3sqw_A 117 KIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDL 196 (579)
T ss_dssp HHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHH
Confidence 98642 23355667778877766665553 479999999999999887543455789999999999999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEE
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 234 (930)
..++..++..... .....|+++|
T Consensus 197 ~~i~~~l~~~~~~---------------------------------------------------------~~~~~~~l~~ 219 (579)
T 3sqw_A 197 ETISGILNEKNSK---------------------------------------------------------SADNIKTLLF 219 (579)
T ss_dssp HHHHHHHHHHCSS---------------------------------------------------------CTTCCEEEEE
T ss_pred HHHHHHhhhhhcc---------------------------------------------------------cccCceEEEE
Confidence 9998888654310 0012255555
Q ss_pred ecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEE
Q psy15524 235 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKML 313 (930)
Q Consensus 235 sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~i 313 (930)
|||+++.+..++..++.++..+........ .......+.+.+..++. ..+...+...+..... ....+.++|
T Consensus 220 SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~i 292 (579)
T 3sqw_A 220 SATLDDKVQKLANNIMNKKECLFLDTVDKN-----EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIK--ERDSNYKAI 292 (579)
T ss_dssp ESSCCTHHHHHTTTTCCSSEEEEEESSCSS-----SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHH--HTTTCCEEE
T ss_pred eccCChHHHHHHHHHcCCCceEEEeecCcc-----ccccccccceEEEEecchhhhHHHHHHHHHHHHh--hcCCCCcEE
Confidence 555555666666666666554433221110 01123456666665553 2333333333321101 124567999
Q ss_pred EEEecccchhhhHHHHhhh
Q psy15524 314 VFMATQDMADYHTELLSTK 332 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~ 332 (930)
|||+|+..|+.++..|+..
T Consensus 293 VF~~t~~~~~~l~~~L~~~ 311 (579)
T 3sqw_A 293 IFAPTVKFTSFLCSILKNE 311 (579)
T ss_dssp EECSSHHHHHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHHHHh
Confidence 9999999999999999865
No 82
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=9.8e-28 Score=272.86 Aligned_cols=244 Identities=27% Similarity=0.451 Sum_probs=190.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.++.|+|+++++|||+|||++|++|+++.+.. ...+.++||++|+++|+.|+.+.++++
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh------cCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988754 123567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+...+ ..+....|+.........+. .+++|+|+||+++.+.+.. ..+.+.++++||+||||++.++++...+..++.
T Consensus 132 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 209 (414)
T 3eiq_A 132 GDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209 (414)
T ss_dssp GGGSC-CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHT
T ss_pred hcccC-ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHHhhccCcHHHHHHHHH
Confidence 87655 56666777777666665555 6789999999999998876 566788899999999999999998877766654
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++ ++. |++++|||++
T Consensus 210 ~~~---~~~-------------------------------------------------------------~~i~~SAT~~ 225 (414)
T 3eiq_A 210 KLN---SNT-------------------------------------------------------------QVVLLSATMP 225 (414)
T ss_dssp TSC---TTC-------------------------------------------------------------EEEEECSCCC
T ss_pred hCC---CCC-------------------------------------------------------------eEEEEEEecC
Confidence 432 233 4445555555
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
..+..+...++.++..+...... .....+.+.+..+.. ..+...+..++. .....++||||++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~lvf~~~ 289 (414)
T 3eiq_A 226 SDVLEVTKKFMRDPIRILVKKEE---------LTLEGIRQFYINVEREEWKLDTLCDLYE-------TLTITQAVIFINT 289 (414)
T ss_dssp HHHHHHHTTTCSSCEEECCCCCC---------CCTTSCCEEEEECSSSTTHHHHHHHHHH-------SSCCSSCEEECSC
T ss_pred HHHHHHHHHHcCCCEEEEecCCc---------cCCCCceEEEEEeChHHhHHHHHHHHHH-------hCCCCcEEEEeCC
Confidence 55555666667777666544332 234556777776654 447888888873 3456799999999
Q ss_pred ccchhhhHHHHhhh
Q psy15524 319 QDMADYHTELLSTK 332 (930)
Q Consensus 319 ~~~~~~l~~~L~~~ 332 (930)
++.++.+++.|...
T Consensus 290 ~~~~~~l~~~l~~~ 303 (414)
T 3eiq_A 290 RRKVDWLTEKMHAR 303 (414)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999764
No 83
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=9e-28 Score=244.80 Aligned_cols=167 Identities=37% Similarity=0.577 Sum_probs=140.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+|+++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+++.++++
T Consensus 21 ~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT------TSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc------cCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988743 234567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+...+..+.|+.....+...+..+++|+|+||+++.+.+.+ +...+.+++++|+||||++.+++|...+..++..
T Consensus 95 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 95 SKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp TTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred HhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHh
Confidence 877656788888999888777777788899999999999998875 5566889999999999999999998888777765
Q ss_pred HhhcCCCceEEEEEeec
Q psy15524 161 LKKQKPQFQSILLSATL 177 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~ 177 (930)
++. +.|++++|||+
T Consensus 174 ~~~---~~~~l~~SAT~ 187 (206)
T 1vec_A 174 LPK---NRQILLYSATF 187 (206)
T ss_dssp SCT---TCEEEEEESCC
T ss_pred CCc---cceEEEEEeeC
Confidence 532 23444444444
No 84
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.96 E-value=1.1e-27 Score=270.25 Aligned_cols=246 Identities=24% Similarity=0.410 Sum_probs=189.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++.++.|+++++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+.+.++++
T Consensus 26 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC------CTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc------cCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988743 123557999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~ 158 (930)
....+...+..+.|+.....+...+.. .++|+|+||+++...+.. ....+.++++||+||||++.++ ++...+..++
T Consensus 100 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~ 178 (391)
T 1xti_A 100 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178 (391)
T ss_dssp TTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHH
T ss_pred HhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHHHHhhccchHHHHHHHH
Confidence 877656788888998887766665554 489999999999998875 5566889999999999999875 5655555544
Q ss_pred HHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEeccc
Q psy15524 159 EILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATL 238 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~ 238 (930)
.. .++..|++++|||+++
T Consensus 179 ~~---~~~~~~~i~~SAT~~~----------------------------------------------------------- 196 (391)
T 1xti_A 179 RM---TPHEKQVMMFSATLSK----------------------------------------------------------- 196 (391)
T ss_dssp HT---SCSSSEEEEEESSCCS-----------------------------------------------------------
T ss_pred hh---CCCCceEEEEEeeCCH-----------------------------------------------------------
Confidence 32 2334567777777653
Q ss_pred chHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEec
Q psy15524 239 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT 318 (930)
Q Consensus 239 ~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s 318 (930)
.+..+...++.++..+....... .....+.+.+..+....|...+..++. .....++||||++
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~lvf~~~ 259 (391)
T 1xti_A 197 --EIRPVCRKFMQDPMEIFVDDETK--------LTLHGLQQYYVKLKDNEKNRKLFDLLD-------VLEFNQVVIFVKS 259 (391)
T ss_dssp --THHHHHHHHCSSCEEEECCCCCC--------CCCTTCEEEEEECCGGGHHHHHHHHHH-------HSCCSEEEEECSC
T ss_pred --HHHHHHHHHcCCCeEEEecCccc--------cCcccceEEEEEcCchhHHHHHHHHHH-------hcCCCcEEEEeCc
Confidence 23333334444555444332211 123557778888888888888888883 3466799999999
Q ss_pred ccchhhhHHHHhhh
Q psy15524 319 QDMADYHTELLSTK 332 (930)
Q Consensus 319 ~~~~~~l~~~L~~~ 332 (930)
++.++.++..|+..
T Consensus 260 ~~~~~~l~~~L~~~ 273 (391)
T 1xti_A 260 VQRCIALAQLLVEQ 273 (391)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
No 85
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.95 E-value=1.5e-27 Score=269.97 Aligned_cols=243 Identities=27% Similarity=0.485 Sum_probs=188.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+|+|+++++.+++|+++++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+++.++++
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------KLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh------ccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988743 123567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ +.+....|+.....+...+..+++|+|+||+++.+.+.. ....+.++++||+||||++.+.+|...+..++..
T Consensus 113 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~ 190 (400)
T 1s2m_A 113 GKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 190 (400)
T ss_dssp TTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTT
T ss_pred hcccC-ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHh
Confidence 87654 667778888877777677777899999999999988765 5566889999999999999887777666555433
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
+ ++..+++++|||++ .
T Consensus 191 ~---~~~~~~i~lSAT~~-------------------------------------------------------------~ 206 (400)
T 1s2m_A 191 L---PPTHQSLLFSATFP-------------------------------------------------------------L 206 (400)
T ss_dssp S---CSSCEEEEEESCCC-------------------------------------------------------------H
T ss_pred C---CcCceEEEEEecCC-------------------------------------------------------------H
Confidence 3 23345666666653 3
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEeccc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~ 320 (930)
.+.......+.++..+..... .....+.+.+..+....|...+..++. .....++||||++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~k~~~l~~~~~-------~~~~~~~lVf~~~~~ 269 (400)
T 1s2m_A 207 TVKEFMVKHLHKPYEINLMEE----------LTLKGITQYYAFVEERQKLHCLNTLFS-------KLQINQAIIFCNSTN 269 (400)
T ss_dssp HHHHHHHHHCSSCEEESCCSS----------CBCTTEEEEEEECCGGGHHHHHHHHHH-------HSCCSEEEEECSSHH
T ss_pred HHHHHHHHHcCCCeEEEeccc----------cccCCceeEEEEechhhHHHHHHHHHh-------hcCCCcEEEEEecHH
Confidence 333333344444544433221 123557778888877888888888883 345679999999999
Q ss_pred chhhhHHHHhhh
Q psy15524 321 MADYHTELLSTK 332 (930)
Q Consensus 321 ~~~~l~~~L~~~ 332 (930)
.++.++..|+..
T Consensus 270 ~~~~l~~~L~~~ 281 (400)
T 1s2m_A 270 RVELLAKKITDL 281 (400)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999764
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=9.4e-28 Score=252.97 Aligned_cols=199 Identities=33% Similarity=0.458 Sum_probs=161.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCc---CCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---ISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~---~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+...... .....++++||++||++|+.|+++++
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998753321 01123568999999999999999999
Q ss_pred HHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
++++...+ ..+..+.|+.....+...+..+++|+|+||+++.+.+.. ....+.++++||+||||++++++|+..+..+
T Consensus 121 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 198 (253)
T 1wrb_A 121 QKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIVLDEADRMLDMGFEPQIRKI 198 (253)
T ss_dssp HHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHhccCC-ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEEEEeCHHHHHhCchHHHHHHH
Confidence 99886544 667778888888878778888899999999999998876 5567899999999999999999999988887
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
+..+.... ....|.++||||
T Consensus 199 ~~~~~~~~------------------------------------------------------------~~~~q~l~~SAT 218 (253)
T 1wrb_A 199 IEESNMPS------------------------------------------------------------GINRQTLMFSAT 218 (253)
T ss_dssp HHSSCCCC------------------------------------------------------------GGGCEEEEEESS
T ss_pred HhhccCCC------------------------------------------------------------CCCcEEEEEEEe
Confidence 76432110 002377888888
Q ss_pred cchHHHHhhhccccCCeeeccCCc
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADS 261 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~ 261 (930)
++..+..++..++.+|..+.+...
T Consensus 219 ~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 219 FPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp CCHHHHHHHHHHCSSCEEEEEC--
T ss_pred CCHHHHHHHHHHcCCCEEEEECCC
Confidence 888888888889988888866543
No 87
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=1.6e-27 Score=281.89 Aligned_cols=266 Identities=29% Similarity=0.434 Sum_probs=189.2
Q ss_pred CCCccCcHHHHHHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~--~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..|+|+|+++++.++ .|+|++++||||||||++|++|+++.+...... ...++++|||+||++|+.|++++++
T Consensus 90 ~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~Ptr~La~Q~~~~~~ 167 (563)
T 3i5x_A 90 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTRDLALQIEAEVK 167 (563)
T ss_dssp TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcCcHHHHHHHHHHHH
Confidence 589999999999999999 678999999999999999999999999774432 2235679999999999999999999
Q ss_pred HHhhh---cCCceeEEeeCCCchHHHHHHh-cCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH
Q psy15524 79 KLCKS---FTWIVPSWLTGGEKMKSEKARI-RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 154 (930)
Q Consensus 79 ~~~~~---~~~~~~~~~~g~~~~~~~~~~l-~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~ 154 (930)
++... .....+..+.|+.....+...+ ..+++|+|+||+++.+++.+.....++++++|||||||++++++|++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~ 247 (563)
T 3i5x_A 168 KIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDL 247 (563)
T ss_dssp HHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHH
Confidence 98653 2234566677887766665555 4579999999999999887543445788999999999999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEE
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 234 (930)
..++..++..... ..+..|+++|
T Consensus 248 ~~i~~~l~~~~~~---------------------------------------------------------~~~~~~~l~~ 270 (563)
T 3i5x_A 248 ETISGILNEKNSK---------------------------------------------------------SADNIKTLLF 270 (563)
T ss_dssp HHHHHHHHHHCSS---------------------------------------------------------CTTCCEEEEE
T ss_pred HHHHHhhhhcccc---------------------------------------------------------CccCceEEEE
Confidence 9998888654310 0011255555
Q ss_pred ecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEE
Q psy15524 235 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKML 313 (930)
Q Consensus 235 sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~i 313 (930)
|||++..+..++..++.++..+........ .......+.+.+...+. ..+...+...+..... ....+.++|
T Consensus 271 SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~i 343 (563)
T 3i5x_A 271 SATLDDKVQKLANNIMNKKECLFLDTVDKN-----EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIK--ERDSNYKAI 343 (563)
T ss_dssp ESSCCTHHHHHTTTTCCSSEEEEEESSCSS-----SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHH--HTTTCCEEE
T ss_pred EccCCHHHHHHHHHhcCCCceEEEeccCCC-----CccccccCceEEEECchhHhhHHHHHHHHHHHHh--hcCCCCcEE
Confidence 555555555666666666544433221110 01123446666665543 2333333333321101 124567999
Q ss_pred EEEecccchhhhHHHHhhh
Q psy15524 314 VFMATQDMADYHTELLSTK 332 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~ 332 (930)
|||+|++.|+.++..|+..
T Consensus 344 VF~~s~~~~~~l~~~L~~~ 362 (563)
T 3i5x_A 344 IFAPTVKFTSFLCSILKNE 362 (563)
T ss_dssp EECSCHHHHHHHHHHHHHH
T ss_pred EEcCcHHHHHHHHHHHHHh
Confidence 9999999999999999865
No 88
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=1.1e-27 Score=248.27 Aligned_cols=154 Identities=25% Similarity=0.398 Sum_probs=132.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|++..+.. ...+.++||++||++|+.|++++++++
T Consensus 42 ~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988754 123567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~ 159 (930)
+.....+.+..+.|+.....+...+ .+++|+|+||+++.+.+.. ..+.+.++++||+||||++++++ |...+..++.
T Consensus 116 ~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~ 193 (230)
T 2oxc_A 116 GIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 193 (230)
T ss_dssp TTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHH
T ss_pred hcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCchHhhcCcchHHHHHHHHH
Confidence 8766457788888888776665554 4689999999999998875 55667899999999999999997 8888877776
Q ss_pred HHh
Q psy15524 160 ILK 162 (930)
Q Consensus 160 ~l~ 162 (930)
.++
T Consensus 194 ~~~ 196 (230)
T 2oxc_A 194 SLP 196 (230)
T ss_dssp HSC
T ss_pred hCC
Confidence 553
No 89
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=2.1e-27 Score=269.87 Aligned_cols=243 Identities=23% Similarity=0.391 Sum_probs=184.9
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..|+|+|+++++.+++| +++++++|||+|||++|++|+++.+.. ...+.++||++|+++|+.|+++.++
T Consensus 43 ~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~ 116 (412)
T 3fht_A 43 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYPQCLCLSPTYELALQTGKVIE 116 (412)
T ss_dssp TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh------cCCCCCEEEECCCHHHHHHHHHHHH
Confidence 58999999999999999987 899999999999999999999988754 2335579999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~i 157 (930)
++....+...+....++....... ...++|+|+||+++.+++.+...+.+.++++|||||||++.+ +++...+..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~ 193 (412)
T 3fht_A 117 QMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 193 (412)
T ss_dssp HHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHH
T ss_pred HHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHH
Confidence 998776667777777776543221 345799999999999998776777789999999999999987 5676665555
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
...+ .+++|++++|||+
T Consensus 194 ~~~~---~~~~~~i~~SAT~------------------------------------------------------------ 210 (412)
T 3fht_A 194 QRML---PRNCQMLLFSATF------------------------------------------------------------ 210 (412)
T ss_dssp HHTS---CTTCEEEEEESCC------------------------------------------------------------
T ss_pred HhhC---CCCceEEEEEeec------------------------------------------------------------
Confidence 4433 2334555555555
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEE
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFM 316 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~ 316 (930)
+..+..+...++.++..+...... .....+.+.+..+.. ..+...+..++. .....++||||
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~lvf~ 273 (412)
T 3fht_A 211 -EDSVWKFAQKVVPDPNVIKLKREE---------ETLDTIKQYYVLCSSRDEKFQALCNLYG-------AITIAQAMIFC 273 (412)
T ss_dssp -CHHHHHHHHHHSSSCEEECCCGGG---------SSCTTEEEEEEECSSHHHHHHHHHHHHH-------HHSSSEEEEEC
T ss_pred -CHHHHHHHHHhcCCCeEEeecccc---------ccccCceEEEEEcCChHHHHHHHHHHHh-------hcCCCCEEEEe
Confidence 444445555556666655544332 234567777776654 567777777773 33567999999
Q ss_pred ecccchhhhHHHHhhh
Q psy15524 317 ATQDMADYHTELLSTK 332 (930)
Q Consensus 317 ~s~~~~~~l~~~L~~~ 332 (930)
++++.++.++..|+..
T Consensus 274 ~~~~~~~~l~~~L~~~ 289 (412)
T 3fht_A 274 HTRKTASWLAAELSKE 289 (412)
T ss_dssp SSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999864
No 90
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=282.23 Aligned_cols=243 Identities=23% Similarity=0.392 Sum_probs=142.4
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..|+|+|+++++.+++| ++++++||||||||++|++|++..+.. ...++++|||+||++|+.|+++.++
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~------~~~~~~~lil~Pt~~La~Q~~~~~~ 183 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYPQCLCLSPTYELALQTGKVIE 183 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT------TSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh------cCCCCcEEEEeChHHHHHHHHHHHH
Confidence 68999999999999999987 899999999999999999999987754 2235579999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~i 157 (930)
++........+....++...... ....++|+|+||+++.+++.+...+.+.++++|||||+|++++ +++...+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i 260 (479)
T 3fmp_B 184 QMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRI 260 (479)
T ss_dssp HHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHH
T ss_pred HHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHH
Confidence 99877666677777776654322 1345799999999999999776777889999999999999987 5666655544
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
...+ .+++|++++|||+
T Consensus 261 ~~~~---~~~~~~i~~SAT~------------------------------------------------------------ 277 (479)
T 3fmp_B 261 QRML---PRNCQMLLFSATF------------------------------------------------------------ 277 (479)
T ss_dssp HTTS---CTTSEEEEEESCC------------------------------------------------------------
T ss_pred HhhC---CccceEEEEeCCC------------------------------------------------------------
Confidence 4332 2334555555554
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEE
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFM 316 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~ 316 (930)
+..+..++..++.++..+...... .....+.+.+..+.. ..+...+..++ ......++||||
T Consensus 278 -~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~lvF~ 340 (479)
T 3fmp_B 278 -EDSVWKFAQKVVPDPNVIKLKREE---------ETLDTIKQYYVLCSSRDEKFQALCNLY-------GAITIAQAMIFC 340 (479)
T ss_dssp -CHHHHHHHHHHSSSEEEEEEC----------------------------------------------------------
T ss_pred -CHHHHHHHHHHcCCCeEEeccccc---------cCcCCceEEEEEeCCHHHHHHHHHHHH-------hhccCCceEEEe
Confidence 444445555556666555444332 123456666666554 45666666666 334567999999
Q ss_pred ecccchhhhHHHHhhh
Q psy15524 317 ATQDMADYHTELLSTK 332 (930)
Q Consensus 317 ~s~~~~~~l~~~L~~~ 332 (930)
++++.|+.++..|...
T Consensus 341 ~s~~~~~~l~~~L~~~ 356 (479)
T 3fmp_B 341 HTRKTASWLAAELSKE 356 (479)
T ss_dssp ----------------
T ss_pred CcHHHHHHHHHHHHhC
Confidence 9999999999999864
No 91
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=246.59 Aligned_cols=191 Identities=41% Similarity=0.622 Sum_probs=154.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+...... ...+.++||++||++|+.|+++.++++
T Consensus 43 ~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT--STDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc--ccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988653221 124667999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ ..+..+.|+.....+...+ .+++|+|+||+++.+.+.....+.+.++++||+||||++.+++|...+..++..
T Consensus 121 ~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 121 GKNHD-FSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TTTSS-CCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred hCCCC-eeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 76544 6677788887766655555 578999999999999887655667889999999999999999998887776655
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++. . .|.++||||+++
T Consensus 199 ~~~---~-------------------------------------------------------------~~~l~~SAT~~~ 214 (236)
T 2pl3_A 199 LPK---K-------------------------------------------------------------RQTLLFSATQTK 214 (236)
T ss_dssp SCT---T-------------------------------------------------------------SEEEEEESSCCH
T ss_pred CCC---C-------------------------------------------------------------CeEEEEEeeCCH
Confidence 432 1 266777777777
Q ss_pred HHHHhhhccccCCeeeccC
Q psy15524 241 AVQRLAGMTLQNPIQIDAA 259 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~ 259 (930)
.+..+++.++.+|..+.+.
T Consensus 215 ~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 215 SVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHHHSCSSCEEEECC
T ss_pred HHHHHHHHhCCCCEEEEeC
Confidence 7888888888888877654
No 92
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.95 E-value=7.4e-28 Score=247.78 Aligned_cols=167 Identities=33% Similarity=0.502 Sum_probs=136.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++||++||++|+.|+++.++++
T Consensus 22 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP------ERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh------CcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988754 223567999999999999999999999
Q ss_pred hhhcC---CceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 81 CKSFT---WIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 81 ~~~~~---~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
....+ ...+..+.|+.........+..+++|+|+||+++.+.+.. +...+.+++++||||||++.+++|...+..+
T Consensus 96 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 174 (219)
T 1q0u_A 96 TKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQI 174 (219)
T ss_dssp HTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred hhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHH
Confidence 87553 3667778888776665555666799999999999998875 5566889999999999999999998887777
Q ss_pred HHHHhhcCCCceEEEEEeec
Q psy15524 158 LEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~ 177 (930)
+..++ +++|++++|||+
T Consensus 175 ~~~~~---~~~~~l~~SAT~ 191 (219)
T 1q0u_A 175 AARMP---KDLQMLVFSATI 191 (219)
T ss_dssp HHTSC---TTCEEEEEESCC
T ss_pred HHhCC---cccEEEEEecCC
Confidence 65543 233444444444
No 93
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=1.5e-27 Score=248.49 Aligned_cols=186 Identities=32% Similarity=0.493 Sum_probs=144.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++||++||++|+.|+++.++++
T Consensus 48 ~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------cCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988753 123567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCC-CcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+...+ ..+....|+.....+...+..+ ++|+|+||+++.+.+.. ..+.+.++++||+||||++.+++|...+..++.
T Consensus 122 ~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 199 (237)
T 3bor_A 122 GDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 199 (237)
T ss_dssp TTTTT-CCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred hhhcC-ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCchHhhccCcHHHHHHHHH
Confidence 86554 5566677777766665555555 89999999999998875 556788999999999999999999888777665
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.++. . .|++++|||++
T Consensus 200 ~~~~---~-------------------------------------------------------------~~~i~~SAT~~ 215 (237)
T 3bor_A 200 KLNT---S-------------------------------------------------------------IQVVLLSATMP 215 (237)
T ss_dssp HSCT---T-------------------------------------------------------------CEEEEECSSCC
T ss_pred hCCC---C-------------------------------------------------------------CeEEEEEEecC
Confidence 5421 1 26677777777
Q ss_pred hHHHHhhhccccCCeeecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDA 258 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~ 258 (930)
+.+..++..++.+|..+.+
T Consensus 216 ~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 216 TDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHHHHHHHCSSCEEEC-
T ss_pred HHHHHHHHHHCCCCEEEEe
Confidence 7778888888888877754
No 94
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=2.3e-27 Score=267.91 Aligned_cols=243 Identities=27% Similarity=0.475 Sum_probs=145.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+++++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+.+.+.++
T Consensus 39 ~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc------cCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988754 123567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
....+ ..+..+.|+.........+. +++|+|+||+++.+.+.. ....+.++++||+||||++.++++...+..++..
T Consensus 113 ~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 113 AFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp TTTSC-CCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred hccCC-eeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHh
Confidence 76654 66777888877665555444 589999999999998876 5566789999999999999999998887777665
Q ss_pred HhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccch
Q psy15524 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP 240 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~~ 240 (930)
++ +..+++++|||+++
T Consensus 190 ~~---~~~~~i~~SAT~~~------------------------------------------------------------- 205 (394)
T 1fuu_A 190 LP---PTTQVVLLSATMPN------------------------------------------------------------- 205 (394)
T ss_dssp SC---TTCEEEEECSSCCH-------------------------------------------------------------
T ss_pred CC---CCceEEEEEEecCH-------------------------------------------------------------
Confidence 43 34567777777642
Q ss_pred HHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcc-hhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 241 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK-LRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 241 ~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
.+..+...++.++..+...... ..+..+.+.+..+... .+...+..++ ......++||||+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~lVf~~~~ 269 (394)
T 1fuu_A 206 DVLEVTTKFMRNPVRILVKKDE---------LTLEGIKQFYVNVEEEEYKYECLTDLY-------DSISVTQAVIFCNTR 269 (394)
T ss_dssp HHHHHHHHHCCSCEEEEECC------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCeEEEecCcc---------ccCCCceEEEEEcCchhhHHHHHHHHH-------hcCCCCcEEEEECCH
Confidence 2223333334444443332211 1123344444444333 3566666666 233567999999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.++.+++.|+..
T Consensus 270 ~~~~~l~~~L~~~ 282 (394)
T 1fuu_A 270 RKVEELTTKLRND 282 (394)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999764
No 95
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.4e-25 Score=266.78 Aligned_cols=327 Identities=16% Similarity=0.216 Sum_probs=213.5
Q ss_pred CCCHHHHHhHHhhh---------cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPIL---------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 414 ~~~~iQ~~~i~~il---------~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
.++|+|.+++..+. .+...|+..+||+|||+.++..+...+... +. .+....++|||+|+ +|+.||.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~-~~-~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS-PD-CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-TT-SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC-cc-ccCCCCcEEEEecH-HHHHHHHH
Confidence 68999999998874 345699999999999999777666554431 11 11124569999996 89999999
Q ss_pred HHHHhhccCCCcceEEEeCCCchHHH--HHHHhc------CCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 485 IFTKLCKSFTWIVPSWLTGGEKMKSE--KARIRK------GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~~~~------~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
++.+++.. ...+..+.||...... ...... ..+|+|+|++.+..... .+....+++||+||||++-+
T Consensus 132 E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCC
Confidence 99998754 1233445555432211 111111 37899999999876543 23345789999999999965
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCHH-------HHH------------HHhhhc-------------------
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTPA-------VQR------------LAGMTL------------------- 598 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~-------~~~------------l~~~~~------------------- 598 (930)
.. ......+..+. ....+++|||+-.+ +-+ +...+.
T Consensus 207 ~~--~~~~~al~~l~----~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 207 SD--NQTYLALNSMN----AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp TC--HHHHHHHHHHC----CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred hh--hHHHHHHHhcc----cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 43 22233333443 34679999997421 000 000000
Q ss_pred ----------CCCEEEEccCCCCcccCccceecCCCceEEEEEcC-----------------------------------
Q psy15524 599 ----------QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP----------------------------------- 633 (930)
Q Consensus 599 ----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 633 (930)
-.|..+...... .....|...........
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~------v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~ 354 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDI------LSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSIT 354 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGG------GGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHh------HhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHH
Confidence 000001000000 00011211111111100
Q ss_pred ------------------------------------------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHH
Q psy15524 634 ------------------------------------------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMAD 671 (930)
Q Consensus 634 ------------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~ 671 (930)
...|+..+..++.... ...+.++|||+.+...++
T Consensus 355 ~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~----~~~~~k~lIFs~~~~~~~ 430 (644)
T 1z3i_X 355 SLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTR----TTTSDKVVLVSNYTQTLD 430 (644)
T ss_dssp HHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHH----HHCCCEEEEEESCHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHh----hcCCCEEEEEEccHHHHH
Confidence 1112222222222110 012679999999999999
Q ss_pred HHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc---EEEeccccccccCCCCccEEEEecCCCChhhHHhhh
Q psy15524 672 YHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG---VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748 (930)
Q Consensus 672 ~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~---vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~ 748 (930)
.+.+.|... ++.+..+||++++.+|..++++|+++... +|++|+++++|+|++++++||++|+|+++..|.|++
T Consensus 431 ~l~~~l~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~ 507 (644)
T 1z3i_X 431 LFEKLCRNR---RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 507 (644)
T ss_dssp HHHHHHHHH---TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHH
T ss_pred HHHHHHHHC---CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHH
Confidence 999999875 78899999999999999999999998764 899999999999999999999999999999999999
Q ss_pred cccccCCCCceEEE--EeCcc
Q psy15524 749 GRTARVGHEGSSLL--FLIPS 767 (930)
Q Consensus 749 GRagR~g~~g~~~~--~~~~~ 767 (930)
||++|.|+...+.+ |+...
T Consensus 508 gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 508 ARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp TTSSSTTCCSCEEEEEEEETT
T ss_pred HhhhhcCCCCceEEEEEEECC
Confidence 99999998765544 44444
No 96
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.94 E-value=1.1e-26 Score=237.11 Aligned_cols=154 Identities=35% Similarity=0.551 Sum_probs=131.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+|+++++|||+|||++|++|+++.+..... ...+.++||++|+++|+.|+++.++++
T Consensus 19 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE---RGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC---TTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988754211 234677999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.. ..+..+.|+.....+...+..+++|+|+||+++.+.+.. ....+.+++++|+||||++.+++|...+..++..
T Consensus 96 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~ 171 (207)
T 2gxq_A 96 APH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSA 171 (207)
T ss_dssp CTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHT
T ss_pred hhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhccchHHHHHHHHHh
Confidence 754 566778888887777777777899999999999998876 5667899999999999999999998877776544
Q ss_pred H
Q psy15524 161 L 161 (930)
Q Consensus 161 l 161 (930)
+
T Consensus 172 ~ 172 (207)
T 2gxq_A 172 T 172 (207)
T ss_dssp S
T ss_pred C
Confidence 3
No 97
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.94 E-value=1e-26 Score=240.41 Aligned_cols=152 Identities=31% Similarity=0.568 Sum_probs=123.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+++|+++++.+++|+|+++++|||+|||++|++|+++.+.. ...+.++||++|+++|+.|+++.++++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------SVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------cCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999988754 223567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ ..+..+.|+.....+...+.. ++|+|+||+++.+.+.+ ....+.++++||+||||++.+++|...+..++..
T Consensus 106 ~~~~~-~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~ 182 (224)
T 1qde_A 106 AFHMD-IKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 182 (224)
T ss_dssp TTTSC-CCEEEECC----------CTT-CSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred hcccC-ceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHh
Confidence 76554 667777887766655554444 89999999999998876 5666889999999999999999998887777655
Q ss_pred H
Q psy15524 161 L 161 (930)
Q Consensus 161 l 161 (930)
+
T Consensus 183 ~ 183 (224)
T 1qde_A 183 L 183 (224)
T ss_dssp S
T ss_pred C
Confidence 4
No 98
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=3e-25 Score=263.38 Aligned_cols=136 Identities=21% Similarity=0.305 Sum_probs=117.7
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
+...+...+...+..... .+.++||||+|+..++.+++.|.+. ++.+..+||+|++.+|..+++.|+.|+.+
T Consensus 420 ~~~~~~~~Ll~~l~~~~~-----~~~~vlVf~~t~~~ae~L~~~L~~~---gi~~~~lh~~~~~~~R~~~~~~f~~g~~~ 491 (664)
T 1c4o_A 420 PTENQILDLMEGIRERAA-----RGERTLVTVLTVRMAEELTSFLVEH---GIRARYLHHELDAFKRQALIRDLRLGHYD 491 (664)
T ss_dssp CSTTHHHHHHHHHHHHHH-----TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHTTSCS
T ss_pred cccchHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHHHHhc---CCCceeecCCCCHHHHHHHHHHhhcCCce
Confidence 334455555555554332 1679999999999999999999885 78888899999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecC-----CCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTA-----PSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~-----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|||||+++++|+|+|++++||++|. |.+..+|+||+|||||.| .|.+++|+.+.+..+.+.+.+
T Consensus 492 VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 492 CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred EEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999999999999999999997 889999999999999985 899999999888777666654
No 99
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=4.9e-26 Score=254.30 Aligned_cols=237 Identities=29% Similarity=0.444 Sum_probs=182.7
Q ss_pred CCCccCcHHHHHHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||..|+|+|+++++.+++| +++++++|||+|||++|++|++..+.. .++.++||++|+++|+.|+.+.+.+
T Consensus 24 ~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~~~~~~ 96 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIEAIILTPTRELAIQVADEIES 96 (367)
T ss_dssp HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCcEEEEcCCHHHHHHHHHHHHH
Confidence 48999999999999999988 699999999999999999999887643 2456799999999999999999999
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+....+ ..+....|+.....+...+. +++|+|+||+++.+.+.. ....+.++++||+||||++.++++...+..++.
T Consensus 97 ~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 173 (367)
T 1hv8_A 97 LKGNKN-LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKDVEKILN 173 (367)
T ss_dssp HHCSSC-CCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHH
T ss_pred HhCCCC-ceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchHhhhhchHHHHHHHHH
Confidence 986543 56677788877666555554 689999999999998875 556688999999999999999998777666554
Q ss_pred HHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecccc
Q psy15524 160 ILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat~~ 239 (930)
.+ .+..+++++|||+++
T Consensus 174 ~~---~~~~~~i~~SAT~~~------------------------------------------------------------ 190 (367)
T 1hv8_A 174 AC---NKDKRILLFSATMPR------------------------------------------------------------ 190 (367)
T ss_dssp TS---CSSCEEEEECSSCCH------------------------------------------------------------
T ss_pred hC---CCCceEEEEeeccCH------------------------------------------------------------
Confidence 33 345577777777643
Q ss_pred hHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecc
Q psy15524 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319 (930)
Q Consensus 240 ~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~ 319 (930)
....+...++.++..+.... ...+.+.+..+....+...+..++. ..+.++||||+++
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~l~--------~~~~~~lvf~~~~ 248 (367)
T 1hv8_A 191 -EILNLAKKYMGDYSFIKAKI-------------NANIEQSYVEVNENERFEALCRLLK--------NKEFYGLVFCKTK 248 (367)
T ss_dssp -HHHHHHHHHCCSEEEEECCS-------------SSSSEEEEEECCGGGHHHHHHHHHC--------STTCCEEEECSSH
T ss_pred -HHHHHHHHHcCCCeEEEecC-------------CCCceEEEEEeChHHHHHHHHHHHh--------cCCCcEEEEECCH
Confidence 22222223333333332211 2356677777777888888888882 4567899999999
Q ss_pred cchhhhHHHHhhh
Q psy15524 320 DMADYHTELLSTK 332 (930)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (930)
+.++.+++.|+..
T Consensus 249 ~~~~~l~~~L~~~ 261 (367)
T 1hv8_A 249 RDTKELASMLRDI 261 (367)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999764
No 100
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.5e-26 Score=238.20 Aligned_cols=168 Identities=28% Similarity=0.500 Sum_probs=136.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+.|+++|+++++.+++|+|+++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+++.++++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------VTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC------CTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc------cCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988743 123457999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc-CcHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFL 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-~~~~~~~~i~ 158 (930)
....+...+..+.|+.....+...+.. .++|+|+||+++.+.+.. ..+.+.+++++|+||||+++++ +|...+..++
T Consensus 106 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~ 184 (220)
T 1t6n_A 106 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 184 (220)
T ss_dssp TTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHH
T ss_pred HhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHH
Confidence 876655778888888877766665554 579999999999998876 5567899999999999999874 6766666555
Q ss_pred HHHhhcCCCceEEEEEeecC
Q psy15524 159 EILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~ 178 (930)
..+ +++.|++++|||++
T Consensus 185 ~~~---~~~~~~i~~SAT~~ 201 (220)
T 1t6n_A 185 RMT---PHEKQVMMFSATLS 201 (220)
T ss_dssp HTS---CSSSEEEEEESCCC
T ss_pred HhC---CCcCeEEEEEeecC
Confidence 433 22345555555554
No 101
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.9e-27 Score=245.60 Aligned_cols=191 Identities=29% Similarity=0.455 Sum_probs=147.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+|+++++|||+|||++|++|++..+... ...+.++||++||++|+.|+++.++++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-----ANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----CSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----ccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988531 234667999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHH-HHHhcCCCcEEEEChHHHHHHHhcCC-CccCCCccEEEEccccccccc---CcHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSE-KARIRKGISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADRILDQ---GYERDIA 155 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~Ilv~Tp~~l~~~l~~~~-~~~l~~l~~vViDE~h~~~~~---~~~~~~~ 155 (930)
+...+ ..+..+.|+...... ......+++|+|+||+++.+++.... .+.+.++++|||||||+++++ +|...+.
T Consensus 122 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 200 (245)
T 3dkp_A 122 SEGTG-FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 200 (245)
T ss_dssp TTTSC-CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHH
T ss_pred hcccC-ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHH
Confidence 87654 444444444322211 12234568999999999999987643 567899999999999999985 4555555
Q ss_pred HHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEe
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLS 235 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~s 235 (930)
.++..+.. ...|.++||
T Consensus 201 ~i~~~~~~---------------------------------------------------------------~~~~~~~~S 217 (245)
T 3dkp_A 201 SIFLACTS---------------------------------------------------------------HKVRRAMFS 217 (245)
T ss_dssp HHHHHCCC---------------------------------------------------------------TTCEEEEEE
T ss_pred HHHHhcCC---------------------------------------------------------------CCcEEEEEe
Confidence 55433211 123777777
Q ss_pred cccchHHHHhhhccccCCeeeccCC
Q psy15524 236 ATLTPAVQRLAGMTLQNPIQIDAAD 260 (930)
Q Consensus 236 at~~~~~~~l~~~~l~~~~~i~~~~ 260 (930)
||++..+..++..++.+|..+.+..
T Consensus 218 AT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 218 ATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp SSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 7777888888888888888886654
No 102
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.94 E-value=4.6e-26 Score=257.26 Aligned_cols=240 Identities=25% Similarity=0.389 Sum_probs=176.1
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
+||..|+|+|+++++.++.| +++++++|||+|||++|++|++..+.. ...+.++||++|+++|+.|+++.++
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~ 96 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP------EDASPQAICLAPSRELARQTLEVVQ 96 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT------TCCSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc------CCCCccEEEECCCHHHHHHHHHHHH
Confidence 58999999999999999988 899999999999999999999988753 2245679999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~i 157 (930)
+++...+ .......++..... ...+++|+|+||+++.+.+.+ ....+.++++||+||||++.+ +++...+..+
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 170 (395)
T 3pey_A 97 EMGKFTK-ITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170 (395)
T ss_dssp HHTTTSC-CCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHH
T ss_pred HHhcccC-eeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHH
Confidence 9876544 45555555543221 133689999999999998875 566789999999999999987 5666665555
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
...+ +++.|++++|||++
T Consensus 171 ~~~~---~~~~~~i~~SAT~~----------------------------------------------------------- 188 (395)
T 3pey_A 171 KRFL---PKDTQLVLFSATFA----------------------------------------------------------- 188 (395)
T ss_dssp HHTS---CTTCEEEEEESCCC-----------------------------------------------------------
T ss_pred HHhC---CCCcEEEEEEecCC-----------------------------------------------------------
Confidence 4433 23345666666653
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEE
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFM 316 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~ 316 (930)
..+..+...++.++..+...... .....+.+.+..+.. ..+...+..++ ......++||||
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~lvf~ 250 (395)
T 3pey_A 189 --DAVRQYAKKIVPNANTLELQTNE---------VNVDAIKQLYMDCKNEADKFDVLTELY-------GLMTIGSSIIFV 250 (395)
T ss_dssp --HHHHHHHHHHSCSCEEECCCGGG---------CSCTTEEEEEEECSSHHHHHHHHHHHH-------TTTTSSEEEEEC
T ss_pred --HHHHHHHHHhCCCCeEEEccccc---------cccccccEEEEEcCchHHHHHHHHHHH-------HhccCCCEEEEe
Confidence 33444444444555444333222 123456666666543 45666666666 344668999999
Q ss_pred ecccchhhhHHHHhhh
Q psy15524 317 ATQDMADYHTELLSTK 332 (930)
Q Consensus 317 ~s~~~~~~l~~~L~~~ 332 (930)
++++.++.++..|+..
T Consensus 251 ~~~~~~~~l~~~l~~~ 266 (395)
T 3pey_A 251 ATKKTANVLYGKLKSE 266 (395)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999764
No 103
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-25 Score=273.23 Aligned_cols=332 Identities=18% Similarity=0.254 Sum_probs=221.4
Q ss_pred CCCCHHHHHhHHhhh----cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 413 TQVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il----~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..++|+|.+++..++ .++++|+..+||+|||+.++..+...+... .....+||||| ..|+.||.+.+.+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~------~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR------RQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH------SCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc------CCCCCEEEEEC-chHHHHHHHHHHH
Confidence 378999999998766 688999999999999999766665544332 23455899999 6899999999998
Q ss_pred hhccCCCcceEEEeCCCchHHHHHHH------------hcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhh
Q psy15524 489 LCKSFTWIVPSWLTGGEKMKSEKARI------------RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 489 ~~~~~~~~~~~~~~gg~~~~~~~~~~------------~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~ 556 (930)
++. ...+....|+.......... ....+|+|+|++.+...... +....+++||+||||++-+
T Consensus 308 ~~p---~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 308 WAP---DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp HST---TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCC
T ss_pred HCC---CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcC
Confidence 864 33445555554433332221 13478999999999765432 2233688999999999954
Q ss_pred cCcHHHHHHHHHHHhhcCccceEEEEccccCH----HHHHHHhhhcCC-----------------------------CEE
Q psy15524 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTP----AVQRLAGMTLQN-----------------------------PIQ 603 (930)
Q Consensus 557 ~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~----~~~~l~~~~~~~-----------------------------~~~ 603 (930)
.+- .....+..+. ....+++|||+-. ++..+....... |..
T Consensus 382 ~~s--~~~~~l~~l~----~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 455 (800)
T 3mwy_W 382 AES--SLYESLNSFK----VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFI 455 (800)
T ss_dssp SSS--HHHHHHTTSE----EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGE
T ss_pred chh--HHHHHHHHhh----hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHH
Confidence 432 2233333332 4456899999831 222222222111 111
Q ss_pred EEccCCCCcccCccceecCCCceEEEEEcC--------------------------------------------------
Q psy15524 604 IDAADSTDIHNTTDSLVIPDSLKQHFIVTP-------------------------------------------------- 633 (930)
Q Consensus 604 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 633 (930)
+........ ...|........+..
T Consensus 456 lRR~k~dv~------~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~ 529 (800)
T 3mwy_W 456 LRRLKKDVE------KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNA 529 (800)
T ss_dssp EECCGGGGT------TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSH
T ss_pred hhhhHHhhh------hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcch
Confidence 110000000 001111111111000
Q ss_pred ------------------------chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEE
Q psy15524 634 ------------------------PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFK 689 (930)
Q Consensus 634 ------------------------~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~ 689 (930)
...|+..+..++..... .+.++|||+.....++.+...|... |+.+..
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~-----~g~kvLIFsq~~~~ld~L~~~L~~~---g~~~~~ 601 (800)
T 3mwy_W 530 EERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK-----DGHRVLIFSQMVRMLDILGDYLSIK---GINFQR 601 (800)
T ss_dssp HHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT-----TTCCEEEEESCHHHHHHHHHHHHHH---TCCCEE
T ss_pred HHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhh-----CCCeEEEEechHHHHHHHHHHHHhC---CCCEEE
Confidence 12234444444443221 2679999999999999999999875 788899
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCc---EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEE--EEe
Q psy15524 690 LHGSMSQSERTEVFKTFRSVKSG---VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL--LFL 764 (930)
Q Consensus 690 lhg~~~~~~R~~v~~~F~~~~~~---vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~--~~~ 764 (930)
+||+++..+|..+++.|+++... +|++|++++.|+|++.+++||++|+|+++..++|++||+.|.|+...+. -|+
T Consensus 602 i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv 681 (800)
T 3mwy_W 602 LDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLV 681 (800)
T ss_dssp ESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEe
Confidence 99999999999999999986654 8999999999999999999999999999999999999999999876554 355
Q ss_pred Ccc--cHHHHHHHHh
Q psy15524 765 IPS--EVKLVEELQN 777 (930)
Q Consensus 765 ~~~--e~~~~~~l~~ 777 (930)
+.. |...++.+..
T Consensus 682 ~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 682 SKDTVEEEVLERARK 696 (800)
T ss_dssp ETTSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 544 4445554443
No 104
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=1.6e-26 Score=262.42 Aligned_cols=241 Identities=19% Similarity=0.196 Sum_probs=175.3
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|| +|+|+|+++++.+++|+|+++++|||||||++|++|++..+. .+.++||++||++|+.|+++++++++
T Consensus 19 ~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 19 GK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQTLERLQKLA 88 (414)
T ss_dssp SS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 66 699999999999999999999999999999999999887662 25679999999999999999999987
Q ss_pred hhcCCceeEEeeCCCch---HHHHHHhcCC-CcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 157 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i 157 (930)
. ..+.+..++|+... ..+...+..+ ++|+|+||+++.+++.. +.+.++++|||||||++.+|+..
T Consensus 89 ~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~------ 157 (414)
T 3oiy_A 89 D--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN------ 157 (414)
T ss_dssp C--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHH------
T ss_pred c--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccch------
Confidence 6 34778888898876 4445555555 99999999999888763 55779999999999998775432
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhh-ccchhh-HHHHHHHHhh--------cCc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILD-QGYERD-IAEFLEILKK--------QKP 227 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~-~~~~~~-~~~~~~~~~~--------~~~ 227 (930)
.+++++ .+|..+ +..++..++. ...
T Consensus 158 ---------------------------------------------~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 192 (414)
T 3oiy_A 158 ---------------------------------------------IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLK 192 (414)
T ss_dssp ---------------------------------------------HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCC
T ss_pred ---------------------------------------------hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCC
Confidence 133344 444444 4455554440 113
Q ss_pred CceEEEEecc-cchHHH-HhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccc
Q psy15524 228 QFQSVLLSAT-LTPAVQ-RLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 305 (930)
Q Consensus 228 ~~q~~~~sat-~~~~~~-~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 305 (930)
..|.+++||| .+..+. .+...++ .+...... ..+.++.+.+..+ .+...+..++..
T Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~~~~----~~~~~~~~---------~~~~~i~~~~~~~---~~~~~l~~~l~~------ 250 (414)
T 3oiy_A 193 PGILVVSSATAKPRGIRPLLFRDLL----NFTVGRLV---------SVARNITHVRISS---RSKEKLVELLEI------ 250 (414)
T ss_dssp CCEEEESSCCSSCCSSTTHHHHHHH----SCCSSCCC---------CCCCSEEEEEESS---CCHHHHHHHHHH------
T ss_pred CceEEEEecCCCcchhHHHHHHHhh----ccCcCccc---------cccccchheeecc---CHHHHHHHHHHH------
Confidence 4599999999 554433 2222221 12111111 2345677777655 455666666632
Q ss_pred cCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 306 EDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 306 ~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.++||||++++.|+.++..|+..
T Consensus 251 --~~~~~lVF~~~~~~~~~l~~~L~~~ 275 (414)
T 3oiy_A 251 --FRDGILIFAQTEEEGKELYEYLKRF 275 (414)
T ss_dssp --HCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred --cCCCEEEEECCHHHHHHHHHHHHHc
Confidence 2479999999999999999999865
No 105
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=1e-25 Score=248.50 Aligned_cols=160 Identities=36% Similarity=0.548 Sum_probs=132.2
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||..|+|+|+++++.+++|+++++++|||+|||++|++|++.. +.++||++|+++|+.|+++.++++
T Consensus 12 ~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999998863 345999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+...+ ..+..+.|+.....+...+. .++|+|+||+++.+.+.. ..+.+.++++||+||||++.++++...+..++..
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~ 156 (337)
T 2z0m_A 80 GRYMD-TKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ 156 (337)
T ss_dssp TTTSC-CCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcC-CcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHHHHHHhh
Confidence 76554 56777788877666655554 489999999999998765 5566788999999999999999998877776655
Q ss_pred HhhcCCCceEEEEEeecC
Q psy15524 161 LKKQKPQFQSILLSATLT 178 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~ 178 (930)
++ ...+++++|||++
T Consensus 157 ~~---~~~~~~~~SAT~~ 171 (337)
T 2z0m_A 157 TS---NRKITGLFSATIP 171 (337)
T ss_dssp CT---TCSEEEEEESCCC
T ss_pred CC---cccEEEEEeCcCC
Confidence 43 2345556666654
No 106
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=3.6e-24 Score=254.00 Aligned_cols=136 Identities=24% Similarity=0.359 Sum_probs=117.9
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCc
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~ 712 (930)
+...+...+...+..... .+.++||||+|+..++.+++.|.+. |+.+..+||++++.+|..++++|++|+.+
T Consensus 426 ~~~~~~~~Ll~~l~~~~~-----~~~~vlVf~~t~~~ae~L~~~L~~~---gi~~~~lh~~~~~~~R~~~l~~f~~g~~~ 497 (661)
T 2d7d_A 426 PIEGQIDDLIGEIQARIE-----RNERVLVTTLTKKMSEDLTDYLKEI---GIKVNYLHSEIKTLERIEIIRDLRLGKYD 497 (661)
T ss_dssp CSTTHHHHHHHHHHHHHT-----TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHHTSCS
T ss_pred cccchHHHHHHHHHHHHh-----cCCeEEEEECCHHHHHHHHHHHHhc---CCCeEEEeCCCCHHHHHHHHHHHhcCCeE
Confidence 334455555555554332 1679999999999999999999985 78888899999999999999999999999
Q ss_pred EEEeccccccccCCCCccEEEEecC-----CCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 713 VLICTDVAARGLDLPLVDWIVQYTA-----PSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 713 vLv~T~~~~~GlDip~v~~VI~~~~-----p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
|||||+++++|+|+|++++||++|. |.+..+|+||+|||||. ..|.+++|+.+.+..+.+.+.+
T Consensus 498 VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 498 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp EEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHH
T ss_pred EEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHH
Confidence 9999999999999999999999997 99999999999999998 7899999999988777666553
No 107
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.93 E-value=1.6e-25 Score=278.30 Aligned_cols=244 Identities=19% Similarity=0.215 Sum_probs=177.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|| +|+|+|++|++.+++|+|++++||||||||++|+++++..+. .+.++|||+||++|+.|++++++++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 477 599999999999999999999999999999998888887762 3567999999999999999999997
Q ss_pred hhhcCCceeEEeeCCCch---HHHHHHhcCC-CcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKM---KSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 156 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~ 156 (930)
+ . ..+.+..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.+++..
T Consensus 145 ~-~-~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~----- 214 (1104)
T 4ddu_A 145 A-D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN----- 214 (1104)
T ss_dssp S-C-TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHH-----
T ss_pred h-C-CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCcccccccc-----
Confidence 6 3 34788889999877 5566666665 99999999999888763 56789999999999987753321
Q ss_pred HHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhh-ccchhh-HHHHHHHHh--------hcC
Q psy15524 157 FLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILD-QGYERD-IAEFLEILK--------KQK 226 (930)
Q Consensus 157 i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~-~~~~~~-~~~~~~~~~--------~~~ 226 (930)
.|++++ .+|..+ +..+++.++ ...
T Consensus 215 ----------------------------------------------~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~ 248 (1104)
T 4ddu_A 215 ----------------------------------------------IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNL 248 (1104)
T ss_dssp ----------------------------------------------HHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSC
T ss_pred ----------------------------------------------chhhhHhcCCCHHHHHHHHHhcccchhhhhhccC
Confidence 133444 444444 444444444 011
Q ss_pred cCceEEEEecc-cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccc
Q psy15524 227 PQFQSVLLSAT-LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 305 (930)
Q Consensus 227 ~~~q~~~~sat-~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 305 (930)
...|+++|||| .+..+... ++.++..+.+.... ..+.++.+.+..+ .|...|..++..
T Consensus 249 ~~~q~ll~SAT~~p~~~~~~---~~~~~l~i~v~~~~---------~~~~~i~~~~~~~---~k~~~L~~ll~~------ 307 (1104)
T 4ddu_A 249 KPGILVVSSATAKPRGIRPL---LFRDLLNFTVGRLV---------SVARNITHVRISS---RSKEKLVELLEI------ 307 (1104)
T ss_dssp CCCEEEEECBSSCCCSSTTH---HHHHHTCCCCCBCC---------CCCCCEEEEEESC---CCHHHHHHHHHH------
T ss_pred CCceEEEEcCCCCcHHHHHH---HhhcceeEEeccCC---------CCcCCceeEEEec---CHHHHHHHHHHh------
Confidence 34599999999 55443321 11222222222211 2356677887765 456666777732
Q ss_pred cCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 306 EDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 306 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
.+.++||||++++.|+.++..|+..|
T Consensus 308 --~~~~~LVF~~s~~~a~~l~~~L~~~g 333 (1104)
T 4ddu_A 308 --FRDGILIFAQTEEEGKELYEYLKRFK 333 (1104)
T ss_dssp --HCSSEEEEESSSHHHHHHHHHHHHTT
T ss_pred --cCCCEEEEECcHHHHHHHHHHHHhCC
Confidence 24799999999999999999998764
No 108
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.93 E-value=6.3e-25 Score=266.67 Aligned_cols=174 Identities=18% Similarity=0.215 Sum_probs=136.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||.+|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+.+.++++
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999998865321 12357999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~ 159 (930)
+...+ +.+..++|+.........+..+++|+|+||++|.+.+.......+.++++|||||||++.++. +...+...+.
T Consensus 85 ~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~ 163 (696)
T 2ykg_A 85 FERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD 163 (696)
T ss_dssp TTTTT-CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred hccCC-ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHH
Confidence 86444 677788888766555555666799999999999999876333368899999999999998665 2222222222
Q ss_pred H-Hh-hcCCCceEEEEEeecCC
Q psy15524 160 I-LK-KQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~-l~-~~~~~~~~i~lSAT~~~ 179 (930)
. +. ...+.+++++||||+..
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~ 185 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGV 185 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCC
T ss_pred HhhcccCCCCCeEEEEeCcccc
Confidence 2 11 12467899999999974
No 109
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.93 E-value=2.8e-25 Score=257.82 Aligned_cols=240 Identities=22% Similarity=0.327 Sum_probs=166.1
Q ss_pred CCCccCcHHHHHHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g--~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.||..|+++|++|++.+++| +++++++|||||||++|+++++..+... ..+.++||++|+++|+.|++++++
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~------~~~~~vLvl~P~~~L~~Q~~~~~~ 210 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS------VPKPQAICLAPSRELARQIMDVVT 210 (508)
T ss_dssp --CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT------CCSCCEEEECSCHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC------CCCceEEEEECcHHHHHHHHHHHH
Confidence 37888999999999999998 9999999999999999999999987542 235579999999999999999999
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc-cCcHHHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEF 157 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~-~~~~~~~~~i 157 (930)
+++.... .......++.... ....+++|+|+||+++.+.+.. ..+.+.++++|||||||++.+ +++...+..+
T Consensus 211 ~~~~~~~-~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i 284 (508)
T 3fho_A 211 EMGKYTE-VKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNMLDQQGLGDQSMRI 284 (508)
T ss_dssp HHSTTSS-CCEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHTTC--CHHHHHHH
T ss_pred HhCCccC-eeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhhcccCCcHHHHHHH
Confidence 9976544 2333233332211 1234689999999999998876 556789999999999999987 5777777666
Q ss_pred HHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEEEecc
Q psy15524 158 LEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSAT 237 (930)
Q Consensus 158 ~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~sat 237 (930)
...++ +++|++++|||+++
T Consensus 285 ~~~~~---~~~~~i~lSAT~~~---------------------------------------------------------- 303 (508)
T 3fho_A 285 KHLLP---RNTQIVLFSATFSE---------------------------------------------------------- 303 (508)
T ss_dssp HHHSC---TTCEEEEEESCCST----------------------------------------------------------
T ss_pred HHhCC---cCCeEEEEeCCCCH----------------------------------------------------------
Confidence 65543 34577777777643
Q ss_pred cchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcC-cchhHHHHHHHHhhhccccccCCcceEEEEE
Q psy15524 238 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP-PKLRLVALASFILGKCQNVNEDEESKMLVFM 316 (930)
Q Consensus 238 ~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~ 316 (930)
.+..+...++.++..+...... .....+.+.+..+. ...+...+..++ ......++||||
T Consensus 304 ---~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~k~~~l~~ll-------~~~~~~~~LVF~ 364 (508)
T 3fho_A 304 ---RVEKYAERFAPNANEIRLKTEE---------LSVEGIKQLYMDCQSEEHKYNVLVELY-------GLLTIGQSIIFC 364 (508)
T ss_dssp ---HHHHHHHHHSTTCEEECCCCCC-------------CCCCEEEEC--CHHHHHHHHHHH-------C---CCCEEEBC
T ss_pred ---HHHHHHHHhcCCCeEEEecccc---------CCcccceEEEEECCchHHHHHHHHHHH-------HhcCCCcEEEEE
Confidence 2333333444444444333222 12234555555553 355677777777 344668999999
Q ss_pred ecccchhhhHHHHhhh
Q psy15524 317 ATQDMADYHTELLSTK 332 (930)
Q Consensus 317 ~s~~~~~~l~~~L~~~ 332 (930)
++++.|+.++..|...
T Consensus 365 ~s~~~a~~l~~~L~~~ 380 (508)
T 3fho_A 365 KKKDTAEEIARRMTAD 380 (508)
T ss_dssp SSTTTTTHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999764
No 110
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.92 E-value=5.3e-25 Score=255.27 Aligned_cols=160 Identities=24% Similarity=0.311 Sum_probs=124.8
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. +..+||++|+++|+.|+++.++++
T Consensus 21 ~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~lvi~P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 21 FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTVVVSPLISLMKDQVDQLQAN 88 (523)
T ss_dssp TCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEEEECSCHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEEEECChHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999742 245999999999999999999876
Q ss_pred hhhcCCceeEEeeCCCchHHHH----HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC--cHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEK----ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG--YERDI 154 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~----~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~--~~~~~ 154 (930)
+ +....+.++....... ....+.++|+|+||+++...... ..+...++++|||||||++.+|| |++.+
T Consensus 89 g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEaH~i~~~g~~fr~~~ 162 (523)
T 1oyw_A 89 G-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEY 162 (523)
T ss_dssp T-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHH
T ss_pred C-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCccccCcCCCccHHHH
Confidence 3 4566667766544332 22345689999999998532111 12334789999999999999998 77777
Q ss_pred HHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 155 AEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 155 ~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+... ....++++++++|||+++
T Consensus 163 ~~l~~l-~~~~~~~~~i~lSAT~~~ 186 (523)
T 1oyw_A 163 AALGQL-RQRFPTLPFMALTATADD 186 (523)
T ss_dssp HGGGGH-HHHCTTSCEEEEESCCCH
T ss_pred HHHHHH-HHhCCCCCEEEEeCCCCH
Confidence 665433 333456789999999864
No 111
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.92 E-value=1.2e-24 Score=254.56 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=124.7
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|||..|+|+|+++|+.+++|+|+++++|||+|||+||++|++.. ++++|||+|+++|+.|+++.+.++
T Consensus 40 fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------~g~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 40 FKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------DGFTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp SCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------SSEEEEECSCHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------CCcEEEEeCHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999742 346999999999999999999887
Q ss_pred hhhcCCceeEEeeCCCchHHHHHH---h---cCCCcEEEEChHHHHH---HHhc-CCCccCCCccEEEEcccccccccC-
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKAR---I---RKGISILVATPGRLLD---HCKH-TETLKFSKVEHLVLDEADRILDQG- 149 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~---l---~~~~~Ilv~Tp~~l~~---~l~~-~~~~~l~~l~~vViDE~h~~~~~~- 149 (930)
+ +.+..++|+......... + ...++|+|+||++|.. ++.. .....+.++++|||||||++.+||
T Consensus 108 g-----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~ 182 (591)
T 2v1x_A 108 G-----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGH 182 (591)
T ss_dssp T-----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCT
T ss_pred C-----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccc
Confidence 3 556777777765544322 2 3568999999998742 2211 023346789999999999999998
Q ss_pred -cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 150 -YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 150 -~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
|++.+..+ ..+....+++++++||||+++
T Consensus 183 dfr~~~~~l-~~l~~~~~~~~ii~lSAT~~~ 212 (591)
T 2v1x_A 183 DFRPDYKAL-GILKRQFPNASLIGLTATATN 212 (591)
T ss_dssp TCCGGGGGG-GHHHHHCTTSEEEEEESSCCH
T ss_pred ccHHHHHHH-HHHHHhCCCCcEEEEecCCCH
Confidence 77776542 233333456778888888753
No 112
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=2.9e-24 Score=209.27 Aligned_cols=146 Identities=25% Similarity=0.507 Sum_probs=136.3
Q ss_pred CCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 622 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
+..+.+.+..++.+.|...|..++... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE-------NPDSCIIFCRTKEHVNQLTDELDDL---GYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH-------CCSSEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHH
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc-------CCCcEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHH
Confidence 456899999999999999999888753 1569999999999999999999875 788999999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+++.|++|+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+.+.+..+++.+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 152 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 152 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888875
No 113
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=215.67 Aligned_cols=163 Identities=25% Similarity=0.393 Sum_probs=128.5
Q ss_pred hhhcCCCEEEEccCCCCcccCccceecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHH
Q psy15524 595 GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 674 (930)
Q Consensus 595 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~ 674 (930)
+.++.+|..|.+.... ..+..+.+.+..++...|...|..++... +.++||||++++.++.++
T Consensus 9 ~~~~~~p~~i~v~~~~---------~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--------~~~~lVF~~~~~~~~~l~ 71 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG---------AASLDVIQEVEYVKEEAKMVYLLECLQKT--------PPPVLIFAEKKADVDAIH 71 (191)
T ss_dssp ----------------------------CCSEEEEEECCGGGHHHHHHHHHTTS--------CSCEEEECSCHHHHHHHH
T ss_pred ccccCCCEEEEECCCC---------CCCcCceEEEEEcChHHHHHHHHHHHHhC--------CCCEEEEECCHHHHHHHH
Confidence 3466778777664332 23467889999999999999988887642 468999999999999999
Q ss_pred HHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccC
Q psy15524 675 ELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754 (930)
Q Consensus 675 ~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 754 (930)
+.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.
T Consensus 72 ~~L~~~---g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~ 148 (191)
T 2p6n_A 72 EYLLLK---GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCS 148 (191)
T ss_dssp HHHHHH---TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC-
T ss_pred HHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccC
Confidence 999875 78889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCcc-cHHHHHHHHh
Q psy15524 755 GHEGSSLLFLIPS-EVKLVEELQN 777 (930)
Q Consensus 755 g~~g~~~~~~~~~-e~~~~~~l~~ 777 (930)
|+.|.+++|+.+. +..+++.+.+
T Consensus 149 g~~g~~i~l~~~~~~~~~~~~l~~ 172 (191)
T 2p6n_A 149 GNTGIATTFINKACDESVLMDLKA 172 (191)
T ss_dssp --CCEEEEEECTTSCHHHHHHHHH
T ss_pred CCCcEEEEEEcCchhHHHHHHHHH
Confidence 9999999999986 6666666543
No 114
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.4e-24 Score=265.57 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=132.8
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
+..|+|+|++|++.++.|++++++||||||||++|.+|++..+.. +.++||++||++|++|+++.+.+++.
T Consensus 182 ~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 346999999999999999999999999999999999999988743 56799999999999999999999875
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.++.+.|+... ..+++|+|+||++|.+++.+ ....+.++++|||||||++.+++|+..+..++..++
T Consensus 253 -----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~ 319 (1108)
T 3l9o_A 253 -----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 319 (1108)
T ss_dssp -----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC
T ss_pred -----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhhhhhccccchHHHHHHHHHhcC
Confidence 45667777652 34689999999999999876 445578999999999999999999999988887664
Q ss_pred hcCCCceEEEEEeecCCC
Q psy15524 163 KQKPQFQSILLSATLTPA 180 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~ 180 (930)
+++|+++||||+++.
T Consensus 320 ---~~~qvl~lSATipn~ 334 (1108)
T 3l9o_A 320 ---DKVRYVFLSATIPNA 334 (1108)
T ss_dssp ---TTSEEEEEECSCSSC
T ss_pred ---CCceEEEEcCCCCCH
Confidence 567999999998763
No 115
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=4.1e-24 Score=209.82 Aligned_cols=154 Identities=24% Similarity=0.457 Sum_probs=136.4
Q ss_pred CCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 622 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
+..+.|.|+.++...|...+..++... ...++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCIALAQLLVEQ---NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-------CCSSEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-------CCCcEEEEECCHHHHHHHHHHHHhc---CCCEEEEECCCCHHHHHH
Confidence 467899999999999999999888753 2579999999999999999999875 788899999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcc-cHHHHHHHHhc-C
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQNR-R 779 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~-e~~~~~~l~~~-~ 779 (930)
+++.|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+.+. +..+++.+.+. +
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999976 45677777653 4
Q ss_pred Cccchh
Q psy15524 780 IRIEEI 785 (930)
Q Consensus 780 ~~~~~~ 785 (930)
+++++.
T Consensus 153 ~~~~~~ 158 (172)
T 1t5i_A 153 VNISEL 158 (172)
T ss_dssp CCEEEC
T ss_pred cchhhC
Confidence 555444
No 116
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.91 E-value=2.3e-23 Score=246.41 Aligned_cols=175 Identities=17% Similarity=0.210 Sum_probs=132.5
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|+..+|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+.+.++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999998865321 22567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHH-HHHH-
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI-AEFL- 158 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~-~~i~- 158 (930)
+...+ +.+..++|+.........+..+++|+|+||+++.+.+.......+.++++|||||||++.+++....+ ...+
T Consensus 79 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 79 FERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp HGGGT-CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred hcccC-ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHH
Confidence 87654 67778888887666666666679999999999999987633337899999999999999988753333 1222
Q ss_pred HHHhhcCCCceEEEEEeecCCC
Q psy15524 159 EILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 159 ~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
..+....+.+++++||||++..
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~ 179 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVG 179 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCT
T ss_pred hhhcccCCCCeEEEEeCCcccC
Confidence 2222335678999999999653
No 117
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=8.9e-24 Score=208.53 Aligned_cols=154 Identities=24% Similarity=0.421 Sum_probs=133.3
Q ss_pred cCCCceEEEEEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHH
Q psy15524 621 IPDSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 621 ~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R 699 (930)
.+..+.|.|+.++... |...+..++... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-------TIGQAIIFCQTRRNAKWLTVEMIQD---GHQVSLLSGELTVEQR 73 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-------CCSEEEEECSCHHHHHHHHHHHHTT---TCCEEEECSSCCHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHH
Confidence 3567899999998766 888888777542 2579999999999999999999875 7889999999999999
Q ss_pred HHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCC------CChhhHHhhhcccccCCCCceEEEEeCcccHHHHH
Q psy15524 700 TEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAP------SSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVE 773 (930)
Q Consensus 700 ~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p------~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~ 773 (930)
..+++.|++|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+.+..+++
T Consensus 74 ~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 153 (175)
T 2rb4_A 74 ASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLM 153 (175)
T ss_dssp HHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHH
T ss_pred HHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHH
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999988888
Q ss_pred HHHhc-CCccch
Q psy15524 774 ELQNR-RIRIEE 784 (930)
Q Consensus 774 ~l~~~-~~~~~~ 784 (930)
.+.+. +.++++
T Consensus 154 ~i~~~~~~~~~~ 165 (175)
T 2rb4_A 154 KIQDHFNSSIKQ 165 (175)
T ss_dssp HHHHHHTCCCEE
T ss_pred HHHHHhcCcccc
Confidence 88664 444433
No 118
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=8.3e-24 Score=210.07 Aligned_cols=149 Identities=32% Similarity=0.497 Sum_probs=121.8
Q ss_pred ecCCCceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHH
Q psy15524 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER 699 (930)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R 699 (930)
..+..+.|.+..++...|...|..++.... .+.++||||++++.++.+++.|... ++.+..+||+|++.+|
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~------~~~k~lVF~~~~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHE---GYACTSIHGDRSQRDR 85 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHHT---TCCEEEEC--------
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHc---CCceEEEeCCCCHHHH
Confidence 346789999999999999999998887632 2679999999999999999999875 7889999999999999
Q ss_pred HHHHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 700 TEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 700 ~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
..+++.|++|+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+.+.+..+++.+.+
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877666654
No 119
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=1.5e-23 Score=204.71 Aligned_cols=145 Identities=26% Similarity=0.490 Sum_probs=127.2
Q ss_pred CCceEEEEEcCchh-hHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHH
Q psy15524 623 DSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701 (930)
Q Consensus 623 ~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~ 701 (930)
..+.|.|..++... |...+..++... ..+++||||++++.++.+++.|... ++.+..+||+|++.+|..
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-------SVTQAVIFCNTRRKVEELTTKLRND---KFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-------TCSCEEEEESSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-------CCCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHH
Confidence 35788888888777 999888888753 2579999999999999999999875 778889999999999999
Q ss_pred HHHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 702 v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
+++.|++|+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+.+.+..+++.+.+
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 147 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 147 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888765
No 120
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.90 E-value=2.2e-23 Score=212.01 Aligned_cols=145 Identities=34% Similarity=0.537 Sum_probs=131.2
Q ss_pred CceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHH
Q psy15524 624 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVF 703 (930)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~ 703 (930)
.+.+.++.++...|+..+..++... .++++||||++++.++.+++.|... ++.+..+||+|++.+|..++
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~-------~~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~ 74 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVA-------SPDRAMVFTRTKAETEEIAQGLLRL---GHPAQALHGDLSQGERERVL 74 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHH-------CCSCEEEECSSHHHHHHHHHHHHHH---TCCEEEECSSSCHHHHHHHH
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHH
Confidence 4556777888899999999888643 1679999999999999999999875 78899999999999999999
Q ss_pred HHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 704 ~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
+.|++|+.+|||||+++++|+|+|++++||++|+|.++..|+||+|||||.|+.|.|++|+++.+..+++.+.+.
T Consensus 75 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~ 149 (212)
T 3eaq_A 75 GAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 149 (212)
T ss_dssp HHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888888653
No 121
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.90 E-value=3.1e-24 Score=267.29 Aligned_cols=238 Identities=18% Similarity=0.276 Sum_probs=170.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||. | ++|+++|+.++.|+|++++||||||||+ |.+|++..+.. .+.++|||+||++|+.|+++.++++
T Consensus 54 ~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred cCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 6898 9 9999999999999999999999999998 99999888754 2567999999999999999999999
Q ss_pred hhhcCCc----eeEEeeCCCchHHH---HHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHH
Q psy15524 81 CKSFTWI----VPSWLTGGEKMKSE---KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD 153 (930)
Q Consensus 81 ~~~~~~~----~~~~~~g~~~~~~~---~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~ 153 (930)
+...+ + .+..++|+.....+ ...+.. ++|+|+||++|.+++.+ ++++++|||||||+|++ ++.+
T Consensus 123 ~~~~~-i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~~ 193 (1054)
T 1gku_B 123 AEKAG-VGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASKN 193 (1054)
T ss_dssp HTTTC-CSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STHH
T ss_pred HhhcC-CCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--cccc
Confidence 87665 4 67888888876653 344555 99999999999998764 67999999999999998 4567
Q ss_pred HHHHHHHHhhcCCCceEEEEEeecCCCccccccccccccccccchhhhhhhhhhhccchhhHHHHHHHHhhcCcCceEEE
Q psy15524 154 IAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVL 233 (930)
Q Consensus 154 ~~~i~~~l~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 233 (930)
+..++..+... ..... ...+...|.++
T Consensus 194 ~~~i~~~lgf~----------~~~~~-------------------------------------------~~~~~~~q~~l 220 (1054)
T 1gku_B 194 VDKLLHLLGFH----------YDLKT-------------------------------------------KSWVGEARGCL 220 (1054)
T ss_dssp HHHHHHHTTEE----------EETTT-------------------------------------------TEEEECCSSEE
T ss_pred HHHHHHHhCcc----------hhhhh-------------------------------------------hhcccCCceEE
Confidence 77777666321 00000 00001124555
Q ss_pred EecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEE
Q psy15524 234 LSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKML 313 (930)
Q Consensus 234 ~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~i 313 (930)
||||++.. ..+...++.++..+.+.... ....++.+.+. ...|...|..++.. .+.++|
T Consensus 221 ~SAT~t~~-~~~~~~~~~~~~~i~v~~~~---------~~~~~i~~~~~---~~~k~~~L~~ll~~--------~~~~~L 279 (1054)
T 1gku_B 221 MVSTATAK-KGKKAELFRQLLNFDIGSSR---------ITVRNVEDVAV---NDESISTLSSILEK--------LGTGGI 279 (1054)
T ss_dssp EECCCCSC-CCTTHHHHHHHHCCCCSCCE---------ECCCCEEEEEE---SCCCTTTTHHHHTT--------SCSCEE
T ss_pred EEecCCCc-hhHHHHHhhcceEEEccCcc---------cCcCCceEEEe---chhHHHHHHHHHhh--------cCCCEE
Confidence 55555444 33333333333333222211 22345666665 35566667777732 257899
Q ss_pred EEEecccchhhhHHHHhhh
Q psy15524 314 VFMATQDMADYHTELLSTK 332 (930)
Q Consensus 314 VF~~s~~~~~~l~~~L~~~ 332 (930)
|||++++.|+.++..|+..
T Consensus 280 VF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 280 IYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp EEESSHHHHHHHHHTTTTS
T ss_pred EEEcCHHHHHHHHHHHhhc
Confidence 9999999999999999865
No 122
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.90 E-value=1.1e-22 Score=240.63 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=137.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+.+.+++++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 6999999999999999999999999999999999999998876321 225679999999999999999999998765
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccC-cHHHHHHHHHHHhh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-YERDIAEFLEILKK 163 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i~~~l~~ 163 (930)
+ +.+..++|+.........+..+++|+|+||+++.+.+.......+.++++|||||||++.+.+ +...+...+.....
T Consensus 80 ~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 G-YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp T-CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred C-cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 4 678888888876666666666799999999999999876443368899999999999998875 22222222222211
Q ss_pred --cCCCceEEEEEeecCCC
Q psy15524 164 --QKPQFQSILLSATLTPA 180 (930)
Q Consensus 164 --~~~~~~~i~lSAT~~~~ 180 (930)
..+.+++++||||+...
T Consensus 159 ~~~~~~~~~l~lSAT~~~~ 177 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVG 177 (555)
T ss_dssp SCCSCCCEEEEEESCCCCT
T ss_pred cccCCCCeEEEEecCcccC
Confidence 13668999999999753
No 123
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=1.4e-23 Score=253.72 Aligned_cols=164 Identities=20% Similarity=0.257 Sum_probs=136.9
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||++|+|+|+++++.+.+|+|+++++|||||||++|.+|+++.+.. +.+++|++|+++|+.|++++++.+
T Consensus 21 ~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcEEEEeCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999988753 456999999999999999999644
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
. ..+ ..+....|+...... ....++|+|+|||++...+.+ ....++++++|||||+|++.+++++..+..++..
T Consensus 92 ~-~~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~ 165 (702)
T 2p6r_A 92 E-KIG-LRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165 (702)
T ss_dssp T-TTT-CCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHH
T ss_pred H-hcC-CEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHH
Confidence 3 233 667777777654322 123689999999999998876 4444789999999999999999999999999999
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
++...+++|++++|||+++
T Consensus 166 l~~~~~~~~ii~lSATl~n 184 (702)
T 2p6r_A 166 MRRMNKALRVIGLSATAPN 184 (702)
T ss_dssp HHHHCTTCEEEEEECCCTT
T ss_pred HHhcCcCceEEEECCCcCC
Confidence 9877788999999999975
No 124
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.90 E-value=1.9e-22 Score=247.10 Aligned_cols=174 Identities=17% Similarity=0.205 Sum_probs=134.3
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+..... ..+.++|||+|+++|+.|+++.++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999999998876321 22567999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHH-HHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD-IAEFLE 159 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~-~~~i~~ 159 (930)
+...+ +.+..++|+.........+..+++|+|+||+++.+.+.......+.++++|||||||++.+.+.... +..++.
T Consensus 320 ~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 320 FERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HGGGT-CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred cccCC-ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 87654 6788888888776666667778999999999999998763333688999999999999987653222 222222
Q ss_pred -HHhhcCCCceEEEEEeecCC
Q psy15524 160 -ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 -~l~~~~~~~~~i~lSAT~~~ 179 (930)
.+....+.+++++||||+..
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~ 419 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGV 419 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCC
T ss_pred HhhccCCCCCeEEEEcCCccc
Confidence 12223567899999999964
No 125
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.90 E-value=1.7e-23 Score=243.96 Aligned_cols=302 Identities=16% Similarity=0.172 Sum_probs=193.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|| .|+|+|..++|.++.|+ ++.++||+|||++|.+|++..... |..++||+||++||.|.++.+..+
T Consensus 80 lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 488 89999999999999998 999999999999999999854322 446999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-ccC----
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG---- 149 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~---- 149 (930)
+..++ +.+.+++||.+.... ....++||+||||++| .+++... ..+.++.+.++||||||.|+ |.+
T Consensus 148 ~~~lg-l~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 148 FEFLG-LTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHTT-CCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HhhcC-CeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 98776 788889998765433 3334699999999999 5554431 24567899999999999998 664
Q ss_pred -----------cHHHHHHHHHHHhhc------CCCceEE-----------------EEEeecCCCcccccc---cccccc
Q psy15524 150 -----------YERDIAEFLEILKKQ------KPQFQSI-----------------LLSATLTPATCWCKH---TETLKF 192 (930)
Q Consensus 150 -----------~~~~~~~i~~~l~~~------~~~~~~i-----------------~lSAT~~~~~~~~~~---~~~~~~ 192 (930)
|..++..++..++.. ..+.|++ ++|||.+....+... ...+.-
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 567777777777520 1234555 778875421100000 000000
Q ss_pred ccccch-------hhhhh-hhhh-hccchhhHHHHHHHHhhc------------------CcCceEEEEecccchHHHHh
Q psy15524 193 SKVEHL-------VLDEA-DRIL-DQGYERDIAEFLEILKKQ------------------KPQFQSVLLSATLTPAVQRL 245 (930)
Q Consensus 193 ~~~~~~-------~~de~-~~~~-~~~~~~~~~~~~~~~~~~------------------~~~~q~~~~sat~~~~~~~l 245 (930)
.++.++ ++||. .+++ +..+.+.+...++.-... ........++.|.......+
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 011111 12221 1111 112222222222110000 00114566788887777777
Q ss_pred hhccccCCeeeccCCcccccCCCcccccCCCce-eEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhh
Q psy15524 246 AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK-QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADY 324 (930)
Q Consensus 246 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~ 324 (930)
...|.-+.+.+ ..... ..... +.++.+...+|..++...+.. ....+.++||||+|+..++.
T Consensus 385 ~~iY~l~vv~I--Ptn~p----------~~r~d~~d~v~~~~~~K~~al~~~i~~-----~~~~~~pvLVft~s~~~se~ 447 (844)
T 1tf5_A 385 RNIYNMQVVTI--PTNRP----------VVRDDRPDLIYRTMEGKFKAVAEDVAQ-----RYMTGQPVLVGTVAVETSEL 447 (844)
T ss_dssp HHHHCCCEEEC--CCSSC----------CCCEECCCEEESSHHHHHHHHHHHHHH-----HHHHTCCEEEEESCHHHHHH
T ss_pred HHHhCCceEEe--cCCCC----------cccccCCcEEEeCHHHHHHHHHHHHHH-----HHhcCCcEEEEECCHHHHHH
Confidence 66663332222 11110 01111 224556778899999888843 12346789999999999999
Q ss_pred hHHHHhhhhh
Q psy15524 325 HTELLSTKKK 334 (930)
Q Consensus 325 l~~~L~~~~~ 334 (930)
++..|+..|-
T Consensus 448 Ls~~L~~~gi 457 (844)
T 1tf5_A 448 ISKLLKNKGI 457 (844)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHCCC
Confidence 9999987653
No 126
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6e-23 Score=253.19 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=132.4
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+||+ |+|+|.+|++.+.+|+++++++|||||||++|.++++..+.. +.++||++|+++|++|+++.+.+.
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHHHH
Confidence 4675 999999999999999999999999999999999999887743 567999999999999999999998
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+. .++.++|+.... .+++|+|+||++|.+++.+ ....+.++++|||||+|++.+++++..+..++..
T Consensus 153 ~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~ 219 (1010)
T 2xgj_A 153 FG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL 219 (1010)
T ss_dssp HS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH
T ss_pred hC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHHh
Confidence 75 456677776543 3579999999999998875 4556789999999999999999999888888776
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
++ +++++++||||+++
T Consensus 220 l~---~~~~il~LSATi~n 235 (1010)
T 2xgj_A 220 LP---DKVRYVFLSATIPN 235 (1010)
T ss_dssp SC---TTCEEEEEECCCTT
T ss_pred cC---CCCeEEEEcCCCCC
Confidence 64 56799999999876
No 127
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.1e-22 Score=246.79 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=135.4
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||++|+|+|.++++. +.+|++++++||||||||++|.+++++.+.. .+.+++|++|+++|+.|++++++.
T Consensus 26 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~il~i~P~r~La~q~~~~~~~ 97 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGKAIYVTPLRALTNEKYLTFKD 97 (715)
T ss_dssp TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSEEEEECSCHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 4899999999999999 7889999999999999999999999988764 246799999999999999999954
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+. ..+ ..+....|+...... .+ ..++|+|+|||++...+.+ ....++++++|||||+|++.+++++..+..++.
T Consensus 98 ~~-~~g-~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~ 171 (715)
T 2va8_A 98 WE-LIG-FKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHYLNDPERGPVVESVTI 171 (715)
T ss_dssp GG-GGT-CCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHH
T ss_pred hh-cCC-CEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhhcCCcccchHHHHHHH
Confidence 43 333 567777777654332 12 3689999999999998876 444478999999999999998899999999988
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.++ ++|++++|||+++
T Consensus 172 ~~~----~~~ii~lSATl~n 187 (715)
T 2va8_A 172 RAK----RRNLLALSATISN 187 (715)
T ss_dssp HHH----TSEEEEEESCCTT
T ss_pred hcc----cCcEEEEcCCCCC
Confidence 887 6799999999975
No 128
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.90 E-value=3.2e-23 Score=240.79 Aligned_cols=301 Identities=16% Similarity=0.130 Sum_probs=168.4
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|+|+|..+++.++.|+ ++.++||+|||++|.+|++..... +.+++||+||++||.|.++.+..++
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 54 69999999999999997 999999999999999999865432 4569999999999999999999999
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-ccC-----
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQG----- 149 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~~----- 149 (930)
..++ +.+.+++||.+.. .+.+..++||+||||+++ .+++... ..+.++++.++||||||.|+ +.+
T Consensus 140 ~~lg-l~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 140 EFLG-LTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 8876 7888899997754 333444699999999999 6776642 13557899999999999998 543
Q ss_pred ----------cHHHHHHHHHHHhhcC-----------------CCceEE------------------------EEEeecC
Q psy15524 150 ----------YERDIAEFLEILKKQK-----------------PQFQSI------------------------LLSATLT 178 (930)
Q Consensus 150 ----------~~~~~~~i~~~l~~~~-----------------~~~~~i------------------------~lSAT~~ 178 (930)
|...+..++..++... .+.|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 5677788888776410 122332 7888865
Q ss_pred CCcccccc---ccccccccccchh-------hhhh-hhhhh-ccchhhHHHHHH---HHhhc---------------CcC
Q psy15524 179 PATCWCKH---TETLKFSKVEHLV-------LDEA-DRILD-QGYERDIAEFLE---ILKKQ---------------KPQ 228 (930)
Q Consensus 179 ~~~~~~~~---~~~~~~~~~~~~~-------~de~-~~~~~-~~~~~~~~~~~~---~~~~~---------------~~~ 228 (930)
....+... ...+.-.++.+++ +||. .+++. ..+.+.+...++ .+.-. ...
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 42222110 0111111222222 2221 11111 111111111100 00000 001
Q ss_pred ceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCc-eeEEEEcCcchhHHHHHHHHhhhccccccC
Q psy15524 229 FQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL-KQHFIVTPPKLRLVALASFILGKCQNVNED 307 (930)
Q Consensus 229 ~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 307 (930)
.....++.|.......+...|--+ .+.+.... . .... ...++.+....|..++...+.. ...
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~--vv~IPtn~---------p-~~R~d~~d~v~~~~~~K~~al~~~i~~-----~~~ 439 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLD--TVVVPTNR---------P-MIRKDLPDLVYMTEAEKIQAIIEDIKE-----RTA 439 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCE--EEECCCSS---------C-CCCEECCCEEESSHHHHHHHHHHHHHH-----HHT
T ss_pred hhhhcCCCCchhHHHHHHHHhCCc--EEEcCCCC---------C-ceeecCCcEEEeCHHHHHHHHHHHHHH-----Hhc
Confidence 145566777766666666665322 22222211 0 0111 1234566778899999988843 234
Q ss_pred CcceEEEEEecccchhhhHHHHhhhhh
Q psy15524 308 EESKMLVFMATQDMADYHTELLSTKKK 334 (930)
Q Consensus 308 ~~~~~iVF~~s~~~~~~l~~~L~~~~~ 334 (930)
.+.|+||||+|+..++.++..|+..|-
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~gi 466 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKAGI 466 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCC
Confidence 568999999999999999999988654
No 129
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=6.6e-23 Score=248.64 Aligned_cols=162 Identities=27% Similarity=0.297 Sum_probs=137.2
Q ss_pred CCCccCcHHHHHHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
+||++|+|+|.++++. +.+|+|+++++|||||||++|.+|+++.+... +.+++|++|+++|+.|+++++++
T Consensus 19 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEEEEEcCcHHHHHHHHHHHHH
Confidence 4899999999999998 88999999999999999999999999888642 46799999999999999999965
Q ss_pred HhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHH
Q psy15524 80 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 159 (930)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~ 159 (930)
+.. .+ +.+..++|+...... ....++|+|+||+++...+.+ ....++++++|||||+|++.+++++..+..++.
T Consensus 91 l~~-~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~ 164 (720)
T 2zj8_A 91 WEK-IG-LRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIGSRDRGATLEVILA 164 (720)
T ss_dssp GGG-GT-CCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HHh-cC-CEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccCCCcccHHHHHHHH
Confidence 443 33 677778886554322 124689999999999988776 444478999999999999999999999999999
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.++. ++|++++|||+++
T Consensus 165 ~l~~---~~~ii~lSATl~n 181 (720)
T 2zj8_A 165 HMLG---KAQIIGLSATIGN 181 (720)
T ss_dssp HHBT---TBEEEEEECCCSC
T ss_pred Hhhc---CCeEEEEcCCcCC
Confidence 9874 6899999999976
No 130
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=3.8e-23 Score=255.03 Aligned_cols=157 Identities=21% Similarity=0.237 Sum_probs=132.6
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|| +|+|+|.++++.+++|+|+++++|||||||++|++++...+.. +.++||++|+++|+.|+++++++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 456 4899999999999999999999999999999999999876543 567999999999999999999887
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+. ...+..++|+.... ..++|+|+||++|.+++.. ....+.++++|||||||++.+++|+..+..++..
T Consensus 106 ~~---~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 106 FD---DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp C-----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred cC---CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 53 36677788876532 4579999999999998875 4455789999999999999999999888888776
Q ss_pred HhhcCCCceEEEEEeecCCCc
Q psy15524 161 LKKQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~~~ 181 (930)
++ +++++++||||+++..
T Consensus 175 l~---~~v~iIlLSAT~~n~~ 192 (997)
T 4a4z_A 175 LP---QHVKFILLSATVPNTY 192 (997)
T ss_dssp SC---TTCEEEEEECCCTTHH
T ss_pred cc---cCCCEEEEcCCCCChH
Confidence 64 5679999999998643
No 131
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=1.3e-22 Score=215.85 Aligned_cols=144 Identities=35% Similarity=0.540 Sum_probs=128.8
Q ss_pred ceEEEEEcCchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHH
Q psy15524 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704 (930)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~ 704 (930)
+.+.++.++...|+..+..++.... ++++||||++++.++.+++.|... ++.+..+||+|++.+|..+++
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-------~~~~LVF~~t~~~~~~l~~~L~~~---g~~~~~lhg~l~~~~r~~~~~ 72 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRL---GHPAQALHGDMSQGERERVMG 72 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHTT---TCCEEEECSCCCTHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-------CCCEEEEECCHHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHH
Confidence 5778889999999999998886542 679999999999999999999874 788999999999999999999
Q ss_pred HhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHhc
Q psy15524 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778 (930)
Q Consensus 705 ~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~~ 778 (930)
.|++|+.+|||||+++++|+|+|++++||+||.|.+...|+||+|||||.|++|.|++|+++.+..+++.+.+.
T Consensus 73 ~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~ 146 (300)
T 3i32_A 73 AFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 146 (300)
T ss_dssp HHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHH
T ss_pred HhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888653
No 132
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.88 E-value=2.1e-22 Score=234.06 Aligned_cols=302 Identities=15% Similarity=0.201 Sum_probs=197.0
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+ .|+++|..+++.++.|+ ++.++||+|||++|.+|++..... |.+++||+||++||.|.++.+..+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 477 79999999999999997 999999999999999999754432 345999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCCCccEEEEccccccc-cc-----
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFSKVEHLVLDEADRIL-DQ----- 148 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~~l~~vViDE~h~~~-~~----- 148 (930)
+..++ +.+++++||.+.... ....++||+||||++| .+++... ..+.++.+.++||||||.|+ |.
T Consensus 176 ~~~lG-Lsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 176 HRFLG-LQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHTT-CCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HhhcC-CeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 98876 888889998765433 3334689999999999 6666542 24567899999999999998 43
Q ss_pred ----------CcHHHHHHHHHHHhhc------CCCceEE-----------------EEEeecCCCcccccc---cccccc
Q psy15524 149 ----------GYERDIAEFLEILKKQ------KPQFQSI-----------------LLSATLTPATCWCKH---TETLKF 192 (930)
Q Consensus 149 ----------~~~~~~~~i~~~l~~~------~~~~~~i-----------------~lSAT~~~~~~~~~~---~~~~~~ 192 (930)
+|...+..++..++.. ..+.|++ ++|||.+....+... ...+..
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 4778888888888621 1345777 788887542111100 000000
Q ss_pred ccccch-------hhhhh-hhhh-hccchhhHHHHHHHHhhc------------------CcCceEEEEecccchHHHHh
Q psy15524 193 SKVEHL-------VLDEA-DRIL-DQGYERDIAEFLEILKKQ------------------KPQFQSVLLSATLTPAVQRL 245 (930)
Q Consensus 193 ~~~~~~-------~~de~-~~~~-~~~~~~~~~~~~~~~~~~------------------~~~~q~~~~sat~~~~~~~l 245 (930)
.++.++ ++||. .+++ +..+.+.+...++.-... .-......++.|.......+
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 111111 12221 1111 111222222222110000 00115666778887777677
Q ss_pred hhccccCCeeeccCCcccccCCCcccccCCCc-eeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhh
Q psy15524 246 AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL-KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADY 324 (930)
Q Consensus 246 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~ 324 (930)
...|--+. +.+..... .... ...++.+....|..++...+.. ....+.|+||||+|+..++.
T Consensus 413 ~~iY~l~v--v~IPtn~p----------~~R~d~~d~v~~t~~~K~~al~~~i~~-----~~~~gqpvLVft~Sie~sE~ 475 (922)
T 1nkt_A 413 HEIYKLGV--VSIPTNMP----------MIREDQSDLIYKTEEAKYIAVVDDVAE-----RYAKGQPVLIGTTSVERSEY 475 (922)
T ss_dssp HHHHCCEE--EECCCSSC----------CCCEECCCEEESCHHHHHHHHHHHHHH-----HHHTTCCEEEEESCHHHHHH
T ss_pred HHHhCCCe--EEeCCCCC----------cccccCCcEEEeCHHHHHHHHHHHHHH-----HHhcCCcEEEEECCHHHHHH
Confidence 66663322 22222110 0111 1234556678899999888843 12356799999999999999
Q ss_pred hHHHHhhhhh
Q psy15524 325 HTELLSTKKK 334 (930)
Q Consensus 325 l~~~L~~~~~ 334 (930)
++..|+..|-
T Consensus 476 Ls~~L~~~Gi 485 (922)
T 1nkt_A 476 LSRQFTKRRI 485 (922)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 9999998764
No 133
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.88 E-value=1.4e-21 Score=241.70 Aligned_cols=173 Identities=17% Similarity=0.206 Sum_probs=132.3
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|+.+|+|+|.++++.++.|+|+++++|||+|||++|++|++..+.... ...+.++|||+|+++|+.|+++++++++
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 577899999999999999999999999999999999999998775421 1225679999999999999999999998
Q ss_pred hhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc-HHHHHHHHHH
Q psy15524 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY-ERDIAEFLEI 160 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~-~~~~~~i~~~ 160 (930)
...+ +.+..++|+.....+...+..+++|+|+||++|.+.+.......+.++++|||||||++...+. ...+..++..
T Consensus 321 ~~~~-~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 321 ERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HTTT-CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred cccC-ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 7554 7788888888666555555567899999999999998864443688999999999999987653 2222222222
Q ss_pred -HhhcCCCceEEEEEeecCC
Q psy15524 161 -LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 -l~~~~~~~~~i~lSAT~~~ 179 (930)
+....+.+++++||||+..
T Consensus 400 ~~~~~~~~~~~l~LSATp~~ 419 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGV 419 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCC
T ss_pred hhccCCCcCeEEEecCCccc
Confidence 2223567899999999964
No 134
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=4.3e-22 Score=204.32 Aligned_cols=172 Identities=21% Similarity=0.253 Sum_probs=121.1
Q ss_pred cCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHH-HHHHHH
Q psy15524 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ-TLEIFT 487 (930)
Q Consensus 409 ~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q-~~~~~~ 487 (930)
......|+++|.++++.+++++++++.+|||+|||++|++++++.+..... ...+.++||++|+++|+.| +.+.+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH---TTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc---ccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 345568999999999999999999999999999999999999987765321 1246789999999999999 777888
Q ss_pred HhhccCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCC-----cccccceEEEEecchhhhhcCcHHH
Q psy15524 488 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-----LKFSKVEHLVLDEADRILDQGYERD 562 (930)
Q Consensus 488 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~-----~~~~~l~~lVlDEah~l~~~g~~~~ 562 (930)
++... ...+..+.|+.........+..+++|+|+||+++...+..... ..+.++++||+||||++.+.++...
T Consensus 105 ~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 105 PFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp HHHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHH
T ss_pred HHhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHH
Confidence 77653 3345566676654444444455799999999999988876432 5578899999999999988765544
Q ss_pred H-HHHHHHH-hhc---------CccceEEEEccc
Q psy15524 563 I-AEFLEIL-KKQ---------KPQFQSILLSAT 585 (930)
Q Consensus 563 l-~~i~~~l-~~~---------~~~~q~vl~SAT 585 (930)
+ ..++... ... .+..+++++|||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3 3332221 111 146899999998
No 135
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.77 E-value=1.5e-23 Score=205.64 Aligned_cols=144 Identities=27% Similarity=0.484 Sum_probs=129.3
Q ss_pred CceEEEEEcCc-hhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHH
Q psy15524 624 SLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702 (930)
Q Consensus 624 ~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v 702 (930)
.+.+.|..++. ..|...+..++... .+.++||||++++.++.+++.|... ++.+..+||+|++.+|..+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-------~~~~~iVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~ 72 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-------EATRSIVFVRKRERVHELANWLREA---GINNCYLEGEMVQGKRNEA 72 (170)
Confidence 45677777777 77888777776532 2579999999999999999999875 7788899999999999999
Q ss_pred HHHhhcCCCcEEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceEEEEeCcccHHHHHHHHh
Q psy15524 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777 (930)
Q Consensus 703 ~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~~~~~~~~e~~~~~~l~~ 777 (930)
++.|++|+.+|||||+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|+.+.+..+++.+.+
T Consensus 73 ~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 73 IKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999999998888877765
No 136
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=200.65 Aligned_cols=168 Identities=22% Similarity=0.286 Sum_probs=119.1
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHH-HHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ-TLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q-~~~~~~~~~~ 82 (930)
..|+++|+++++.++.++++++++|||+|||++|+++++..+...... ..+.++||++|+++|+.| +.+.+.++..
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT---TCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc---cCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999999999887653211 235679999999999999 6777888765
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCC-----ccCCCccEEEEcccccccccCcHHHH-HH
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET-----LKFSKVEHLVLDEADRILDQGYERDI-AE 156 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-----~~l~~l~~vViDE~h~~~~~~~~~~~-~~ 156 (930)
. ...+..+.|+.........+..+++|+|+||+++...+..... ..+.++++|||||||++.+.++...+ ..
T Consensus 109 ~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 109 K--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp T--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred c--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 3 3566667777655544444445689999999999988876322 55788999999999999877655443 23
Q ss_pred HHH-HHhhc---------CCCceEEEEEee
Q psy15524 157 FLE-ILKKQ---------KPQFQSILLSAT 176 (930)
Q Consensus 157 i~~-~l~~~---------~~~~~~i~lSAT 176 (930)
++. .++.. .+.+++++||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 222 22221 267899999998
No 137
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.85 E-value=1.1e-20 Score=220.03 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=71.8
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEE--e
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI--C 716 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv--~ 716 (930)
..+...+...+.. .+++++|||+|....+.+++.+.. ..++ .+|.. .+|..+++.|+++. .||+ |
T Consensus 370 ~~~~~~l~~~~~~----~~g~~lvff~S~~~~~~v~~~l~~-----~~~~-~q~~~--~~~~~~l~~f~~~~-~il~~V~ 436 (540)
T 2vl7_A 370 PIYSILLKRIYEN----SSKSVLVFFPSYEMLESVRIHLSG-----IPVI-EENKK--TRHEEVLELMKTGK-YLVMLVM 436 (540)
T ss_dssp HHHHHHHHHHHHT----CSSEEEEEESCHHHHHHHHTTCTT-----SCEE-ESTTT--CCHHHHHHHHHTSC-CEEEEEC
T ss_pred HHHHHHHHHHHHh----CCCCEEEEeCCHHHHHHHHHHhcc-----CceE-ecCCC--CcHHHHHHHHhcCC-eEEEEEe
Confidence 3444455444332 257999999999999988877753 3333 36654 46889999999864 6877 8
Q ss_pred ccccccccCCCC----ccEEEEecCCCCh------------------------------hhHHhhhcccccCCCCceEEE
Q psy15524 717 TDVAARGLDLPL----VDWIVQYTAPSSS------------------------------TDYVHRVGRTARVGHEGSSLL 762 (930)
Q Consensus 717 T~~~~~GlDip~----v~~VI~~~~p~s~------------------------------~~y~qr~GRagR~g~~g~~~~ 762 (930)
|+.+++|||+|+ +++||.+++|... ....|.+||.-|...+-.+++
T Consensus 437 ~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 437 RAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp ---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEE
T ss_pred cCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEE
Confidence 999999999997 8999999988521 234589999999876655555
Q ss_pred EeCc
Q psy15524 763 FLIP 766 (930)
Q Consensus 763 ~~~~ 766 (930)
++.+
T Consensus 517 llD~ 520 (540)
T 2vl7_A 517 LCDS 520 (540)
T ss_dssp EESG
T ss_pred EEcc
Confidence 5544
No 138
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=238.00 Aligned_cols=171 Identities=20% Similarity=0.283 Sum_probs=130.2
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH-HHHHHHHhhh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT-LEIFTKLCKS 83 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~-~~~~~~~~~~ 83 (930)
+|+|+|.++++.+++|+|+++++|||+|||++|++|++..+..... ...+.++|||+|+++|+.|+ .+++++++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 6999999999999999999999999999999999999998876322 11235699999999999999 9999998864
Q ss_pred cCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhc-----CCCccCCCccEEEEcccccccccC-cHHHHHHH
Q psy15524 84 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH-----TETLKFSKVEHLVLDEADRILDQG-YERDIAEF 157 (930)
Q Consensus 84 ~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-----~~~~~l~~l~~vViDE~h~~~~~~-~~~~~~~i 157 (930)
.+.+..++|+.........+...++|+|+||++|.+.+.+ ...+.+.++++|||||||++...+ +...+...
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 3677788888776655556667899999999999988742 244567899999999999986644 33333322
Q ss_pred HH-HHhhcC---------CCceEEEEEeecCCC
Q psy15524 158 LE-ILKKQK---------PQFQSILLSATLTPA 180 (930)
Q Consensus 158 ~~-~l~~~~---------~~~~~i~lSAT~~~~ 180 (930)
+. .++... +.+++++||||+...
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCC
T ss_pred HHhhhcccccccccccCCCCCEEEEeccccccc
Confidence 22 222222 678999999999864
No 139
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.84 E-value=9.5e-21 Score=196.48 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=125.5
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhcc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 492 (930)
-.++++|.++++.+..|+++++.||||||||+++.+++++.+.... ...+.++++++|+++|+.|+++.+......
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----RAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----CGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----CCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3578999999999999999999999999999999999988776522 123568999999999999999988776543
Q ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhh-hhcCcH-HHHHHHHHHH
Q psy15524 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI-LDQGYE-RDIAEFLEIL 570 (930)
Q Consensus 493 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l-~~~g~~-~~l~~i~~~l 570 (930)
......+.-....... ...+++|+|+|||++.+++.. .++++++||+||||++ ++++|. ..+..++...
T Consensus 136 ~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 136 EPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp CTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred ccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 2222233222221110 113578999999999999875 3789999999999985 666665 3444444332
Q ss_pred hhcCccceEEEEccccCHHHHHHHhhhcCCC
Q psy15524 571 KKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601 (930)
Q Consensus 571 ~~~~~~~q~vl~SAT~~~~~~~l~~~~~~~~ 601 (930)
++.|+++||||++... +.+.+...|
T Consensus 207 ----~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 207 ----PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp ----TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred ----CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 4789999999999765 555444444
No 140
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.84 E-value=8.6e-21 Score=226.53 Aligned_cols=154 Identities=22% Similarity=0.376 Sum_probs=120.8
Q ss_pred CCCccCcHHHHHHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG------GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g------~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
+|| +||++|+++++.++++ +|+++++|||||||++|++|++..+.. +.+++|++||++|+.|++
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMVPTSILAIQHY 434 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEECSCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHH
Confidence 578 7999999999998875 599999999999999999999998864 567999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+.+++...+ +.+..++|+....... ..+.. .++|+|+||+.+.+ .+.+.++++|||||+|++.....
T Consensus 435 ~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~~qr 507 (780)
T 1gm5_A 435 RRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGVKQR 507 (780)
T ss_dssp HHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC-----
T ss_pred HHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhhHHHH
Confidence 99999987655 6788888887655432 33334 59999999988754 24578999999999999732211
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..+.....++++++||||+.+
T Consensus 508 --------~~l~~~~~~~~vL~mSATp~p 528 (780)
T 1gm5_A 508 --------EALMNKGKMVDTLVMSATPIP 528 (780)
T ss_dssp --------CCCCSSSSCCCEEEEESSCCC
T ss_pred --------HHHHHhCCCCCEEEEeCCCCH
Confidence 112233356788888888865
No 141
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.83 E-value=2.7e-19 Score=207.75 Aligned_cols=160 Identities=23% Similarity=0.213 Sum_probs=127.4
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+|+|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++||++|+++|+.|+.+++.+++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~- 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNL- 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCS-
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCc-
Confidence 6899999999999999 99999999999999999999888752 2456999999999999999999998632
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+...+..+.|+....... ....+++|+|+||+.+...+.. ..+.+.++++||+||||++.+...... +...+...
T Consensus 79 ~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~---~~~~~~~~ 153 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVF---IAREYKRQ 153 (494)
T ss_dssp CGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHH---HHHHHHHH
T ss_pred chhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHH---HHHHHHhc
Confidence 234677777777655433 3334689999999999988775 556788999999999999986543332 33444444
Q ss_pred CCCceEEEEEeecCC
Q psy15524 165 KPQFQSILLSATLTP 179 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~ 179 (930)
.+..++++|||||.+
T Consensus 154 ~~~~~~l~lTaTp~~ 168 (494)
T 1wp9_A 154 AKNPLVIGLTASPGS 168 (494)
T ss_dssp CSSCCEEEEESCSCS
T ss_pred CCCCeEEEEecCCCC
Confidence 567799999999973
No 142
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.83 E-value=1e-18 Score=204.20 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=96.4
Q ss_pred CCCHHHHHhHHh----hhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQP----ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~----il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+++|.|.+.+.. +..|+|++++||||+|||++|++|++. . +.+++|++||++|+.|+.+++..+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~---------~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V---------KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H---------CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C---------CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 689999987764 457899999999999999999999996 1 568999999999999999999887
Q ss_pred hccCCCcceEEEeCCCch---------------------------------HHHH------------------HHHhcCC
Q psy15524 490 CKSFTWIVPSWLTGGEKM---------------------------------KSEK------------------ARIRKGI 518 (930)
Q Consensus 490 ~~~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~~~~~~ 518 (930)
....+ .....+.|+.+. .... +....++
T Consensus 71 ~~~~~-~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~a 149 (551)
T 3crv_A 71 REKRN-ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKA 149 (551)
T ss_dssp CCSSC-CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGC
T ss_pred hhhcC-ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcC
Confidence 65432 334445543211 0111 2234578
Q ss_pred cEEEECchhHHHhhhccCCccc-ccceEEEEecchhhhh
Q psy15524 519 SILVATPGRLLDHCKHTETLKF-SKVEHLVLDEADRILD 556 (930)
Q Consensus 519 ~Ilv~Tp~rl~~~l~~~~~~~~-~~l~~lVlDEah~l~~ 556 (930)
+|||+|++.|++...+.. +.+ ....++||||||.+.+
T Consensus 150 dIVV~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp SEEEEETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG
T ss_pred CEEEeCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH
Confidence 999999999988754422 222 4678999999999876
No 143
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.82 E-value=4.1e-19 Score=222.59 Aligned_cols=154 Identities=23% Similarity=0.281 Sum_probs=118.2
Q ss_pred CCCccCcHHHHHHHHHhhc----CC--cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILD----GG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~----g~--~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~ 74 (930)
+||+ +||+|.+|++.+++ |+ |+++++|||+|||++|+++++..+.. +.+++|++||++|+.|++
T Consensus 600 f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---------g~~vlvlvPt~~La~Q~~ 669 (1151)
T 2eyq_A 600 FPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQVAVLVPTTLLAQQHY 669 (1151)
T ss_dssp CCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCEEEEECSSHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCeEEEEechHHHHHHHH
Confidence 4775 79999999999886 66 99999999999999999998876532 568999999999999999
Q ss_pred HHHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCc
Q psy15524 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 150 (930)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~ 150 (930)
+.+.+.+...+ +.+..+++........ ..+.. .++|+|+||+.+. ..+.+.++++|||||+|++.
T Consensus 670 ~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiDEaH~~g---- 738 (1151)
T 2eyq_A 670 DNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVDEEHRFG---- 738 (1151)
T ss_dssp HHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEESGGGSC----
T ss_pred HHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEechHhcC----
Confidence 99999877554 5666677665544332 33434 5999999997663 23557899999999999952
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 151 ERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 151 ~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
.....++..++ .++++++||||+.+
T Consensus 739 -~~~~~~l~~l~---~~~~vl~lSATp~p 763 (1151)
T 2eyq_A 739 -VRHKERIKAMR---ANVDILTLTATPIP 763 (1151)
T ss_dssp -HHHHHHHHHHH---TTSEEEEEESSCCC
T ss_pred -hHHHHHHHHhc---CCCCEEEEcCCCCh
Confidence 23333444333 45689999999865
No 144
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.79 E-value=4.6e-20 Score=210.25 Aligned_cols=152 Identities=15% Similarity=0.104 Sum_probs=110.7
Q ss_pred CCccCcHHHHHHHHHhhcCCcE-EEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILDGGDV-LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~-lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
|+.+++|+|+ ++|.+++|+++ ++++|||||||++|++|++..+.. .+.++||++||++|+.|+++.+...
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 8899999986 79999999887 999999999999999999987754 2467999999999999999987422
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
.+....+.... ....+..|.++|++.+...+.+. ..+.++++|||||||++ +..+......+...
T Consensus 72 -------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 72 -------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp -------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred -------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 22211111110 11234579999999998877642 45789999999999987 44443333333221
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
...+++|+++||||+++
T Consensus 137 --~~~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 137 --VEMGEAAAIFMTATPPG 153 (451)
T ss_dssp --HHTTSCEEEEECSSCTT
T ss_pred --hcCCCceEEEEccCCCc
Confidence 23456789999999865
No 145
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=1.2e-19 Score=194.09 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=117.7
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++++|.++++.++.+++.++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.+.+++..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~- 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF- 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSC-
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhccc-
Confidence 7999999999999998889999999999999998888876653 2347999999999999999999988643
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhc
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~ 573 (930)
.......+.||..... ....+.+|+|+||+++.... ...+.+++++|+||||++.+. .+..++..+
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~~----~~~~il~~~--- 249 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATGK----SISSIISGL--- 249 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCHH----HHHHHTTTC---
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCcc----cHHHHHHHh---
Confidence 2334566667654322 12246899999999875432 234678999999999999743 444444433
Q ss_pred CccceEEEEccccCHH
Q psy15524 574 KPQFQSILLSATLTPA 589 (930)
Q Consensus 574 ~~~~q~vl~SAT~~~~ 589 (930)
....+++++|||+++.
T Consensus 250 ~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 250 NNCMFKFGLSGSLRDG 265 (282)
T ss_dssp TTCCEEEEECSSCCTT
T ss_pred hcCCeEEEEeCCCCCc
Confidence 3478999999999865
No 146
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.78 E-value=7e-19 Score=205.19 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=119.5
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+|+|.+|++.+++++++++++|||+|||++|++++...+.. ...++|||+|+++|+.|++++++++...
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~- 183 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLF- 183 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSS-
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcC-
Confidence 7999999999999999999999999999999999999887754 1237999999999999999999887442
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+...+..+.|+.....+ +...++|+|+||+.+... ....+.++++|||||+|++.. ..+..++ ...
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il---~~~ 249 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSII---SGL 249 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHG---GGC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHH---Hhc
Confidence 33566667777655443 456789999999976432 334567899999999999875 2333333 334
Q ss_pred CCCceEEEEEeecCC
Q psy15524 165 KPQFQSILLSATLTP 179 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~ 179 (930)
.+..++++|||||++
T Consensus 250 ~~~~~~l~lSATp~~ 264 (510)
T 2oca_A 250 NNCMFKFGLSGSLRD 264 (510)
T ss_dssp TTCCEEEEEESCGGG
T ss_pred ccCcEEEEEEeCCCC
Confidence 456799999999964
No 147
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.78 E-value=7e-19 Score=187.99 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=117.4
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+++|.++++.++++.+.++++|||+|||+++++++...+.. .+.++||++|+++|+.|+.+++++++...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 6999999999999988899999999999999999888876653 12369999999999999999999886432
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
...+..++++..... ......+|+|+||+.+... ....+.++++||+||||++.+ +.+..++..+
T Consensus 185 -~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~--- 249 (282)
T 1rif_A 185 -HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGL--- 249 (282)
T ss_dssp -GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC---
T ss_pred -cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh---
Confidence 245566666654332 2235689999999987543 223467899999999999974 3444444433
Q ss_pred CCCceEEEEEeecCCCc
Q psy15524 165 KPQFQSILLSATLTPAT 181 (930)
Q Consensus 165 ~~~~~~i~lSAT~~~~~ 181 (930)
....++++||||+++..
T Consensus 250 ~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 250 NNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TTCCEEEEECSSCCTTS
T ss_pred hcCCeEEEEeCCCCCcc
Confidence 34679999999997643
No 148
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.78 E-value=7.4e-19 Score=202.85 Aligned_cols=138 Identities=20% Similarity=0.149 Sum_probs=111.8
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
+|+|+|+++++.++.+.++++++|||+|||++|+.++... +.++|||+|+++|+.|+.++++++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 6999999999999999999999999999999999998754 235999999999999999999883
Q ss_pred CCce-eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 85 TWIV-PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 85 ~~~~-~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
+ .. +..+.|+.. ...+|+|+||+.+...+.. ...++++|||||+|++...+|.. ++..
T Consensus 157 ~-~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~----~~~~~~liIvDEaH~~~~~~~~~----~~~~--- 215 (472)
T 2fwr_A 157 G-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQM--- 215 (472)
T ss_dssp C-GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEETGGGTTSTTTHH----HHHT---
T ss_pred C-CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH----hcCCCCEEEEECCcCCCChHHHH----HHHh---
Confidence 2 45 666776654 2478999999999776642 12469999999999999887754 2222
Q ss_pred cCCCceEEEEEeecCCC
Q psy15524 164 QKPQFQSILLSATLTPA 180 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~~ 180 (930)
.+..++++|||||.+.
T Consensus 216 -~~~~~~l~lSATp~~~ 231 (472)
T 2fwr_A 216 -SIAPFRLGLTATFERE 231 (472)
T ss_dssp -CCCSEEEEEESCCCCT
T ss_pred -cCCCeEEEEecCccCC
Confidence 2456899999999853
No 149
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=179.50 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=117.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.++++|+++++.+..|++++++||||||||.++.++++..+..... ..+.++++++|+++|+.|+.+.+.......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999887665322 124579999999999999999887665432
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccc-cccCcH-HHHHHHHHHHh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI-LDQGYE-RDIAEFLEILK 162 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~-~~~~~~-~~~~~i~~~l~ 162 (930)
....++.-.... ......+++|+|+||+++++++.. .++++++|||||||.+ ++.++. ..+..+.
T Consensus 137 ~~~~~g~~~~~~-----~~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~---- 203 (235)
T 3llm_A 137 PGKSCGYSVRFE-----SILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVV---- 203 (235)
T ss_dssp TTSSEEEEETTE-----EECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHH----
T ss_pred cCceEEEeechh-----hccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHH----
Confidence 112222111111 011124578999999999999875 3889999999999986 665554 2333333
Q ss_pred hcCCCceEEEEEeecCCCc
Q psy15524 163 KQKPQFQSILLSATLTPAT 181 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~~ 181 (930)
...++.|+++||||++...
T Consensus 204 ~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 204 QAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHCTTSEEEEEECSSCCHH
T ss_pred hhCCCCeEEEEecCCCHHH
Confidence 3346789999999998643
No 150
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.76 E-value=2.2e-19 Score=210.64 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=114.9
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
...++|+|+.+++.+++|+|++++||||||||++|++|+++.+.. .+.++||++||++|+.|+++.+...
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~PtreLa~Qi~~~l~~~-- 238 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTRVVAAEMEEALRGL-- 238 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS--
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChHHHHHHHHHHhcCC--
Confidence 356789988899999999999999999999999999999998865 2456999999999999999887622
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
.+. +.+..- . .....+..+.++|.+.+...+... ..+.++++|||||||++ +.++...+..+...++
T Consensus 239 -----~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~ 305 (618)
T 2whx_A 239 -----PIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE 305 (618)
T ss_dssp -----CEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH
T ss_pred -----cee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhc
Confidence 222 111110 0 001123457788888887766542 34789999999999998 6678778877777764
Q ss_pred hcCCCceEEEEEeecCCC
Q psy15524 163 KQKPQFQSILLSATLTPA 180 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~~ 180 (930)
. ++.|+++||||+++.
T Consensus 306 ~--~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 306 M--GEAAAIFMTATPPGS 321 (618)
T ss_dssp H--TSCEEEEECSSCTTC
T ss_pred c--cCccEEEEECCCchh
Confidence 3 456888888888653
No 151
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.74 E-value=7.2e-18 Score=195.18 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=110.1
Q ss_pred CCCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+ .|+++|..+++.++.|+ ++.++||+|||++|.+|++..... |.+++|++||++||.|.++.+..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 588 89999999999999998 999999999999999999644432 446999999999999999999999
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHH-HHHHhcC-----CCccCC---CccEEEEccccccc
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL-LDHCKHT-----ETLKFS---KVEHLVLDEADRIL 146 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-----~~~~l~---~l~~vViDE~h~~~ 146 (930)
+..++ +.+.+++||.+... .....++||+||||+++ .+++... ..+.++ ++.++||||+|.|+
T Consensus 144 ~~~lG-Lsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLG-LSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTT-CCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcC-CeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 98776 78888999877433 33344699999999999 7777653 134577 89999999999987
No 152
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.74 E-value=1.1e-18 Score=202.38 Aligned_cols=143 Identities=19% Similarity=0.153 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCc
Q psy15524 8 TVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 87 (930)
Q Consensus 8 ~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 87 (930)
+.|+++++.+..+++++++||||||||.+|.+|+++. +.++||++||++|+.|+++++.+... .
T Consensus 220 ~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~g----~ 283 (666)
T 3o8b_A 220 TDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAHG----I 283 (666)
T ss_dssp CCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHHS----C
T ss_pred HHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHhC----C
Confidence 3444445556678899999999999999999998751 44699999999999999998876653 3
Q ss_pred eeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCC
Q psy15524 88 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 167 (930)
Q Consensus 88 ~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~ 167 (930)
.+....|+.. ...+++|+|+||++|+ . ...+.++++++|||||||+ ++.+|...+..+++.++... .
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~-~ 350 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAG-A 350 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTT-C
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcC-C
Confidence 3455556543 3567899999999984 2 2566788999999999965 56778788888887776443 2
Q ss_pred ceEEEEEeecCC
Q psy15524 168 FQSILLSATLTP 179 (930)
Q Consensus 168 ~~~i~lSAT~~~ 179 (930)
..++++|||+++
T Consensus 351 ~llil~SAT~~~ 362 (666)
T 3o8b_A 351 RLVVLATATPPG 362 (666)
T ss_dssp SEEEEEESSCTT
T ss_pred ceEEEECCCCCc
Confidence 236667888865
No 153
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.72 E-value=4.7e-18 Score=201.58 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=90.1
Q ss_pred cCcHHHHHHHHHhhc----C-CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHH-HHHH
Q psy15524 5 QVTTVQQLSIQPILD----G-GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL-EIFT 78 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g-~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~-~~~~ 78 (930)
.|+|+|.++++.+++ | +++++++|||+|||++++..+...+...-.......+.++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999876 4 569999999999999966555444332111111124567999999999999999 6666
Q ss_pred HHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcC---CCccCCCccEEEEcccccccccCcHHHHH
Q psy15524 79 KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT---ETLKFSKVEHLVLDEADRILDQGYERDIA 155 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~---~~~~l~~l~~vViDE~h~~~~~~~~~~~~ 155 (930)
.+.. ....+.++ ....+.+|+|+||+++....... ..+...++++|||||||++...+ ...+.
T Consensus 258 ~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 258 PFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred hcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 5432 22222222 12356899999999998765421 23446789999999999987642 13345
Q ss_pred HHHHHHhhcCCCceEEEEEeecCC
Q psy15524 156 EFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 156 ~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
.++..++ ..++++|||||..
T Consensus 324 ~il~~~~----~~~~l~lTATP~~ 343 (590)
T 3h1t_A 324 EILEYFE----PAFQIGMTATPLR 343 (590)
T ss_dssp HHHHHST----TSEEEEEESSCSC
T ss_pred HHHHhCC----cceEEEecccccc
Confidence 5555543 4689999999975
No 154
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.71 E-value=2.6e-16 Score=184.94 Aligned_cols=118 Identities=17% Similarity=0.273 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEecc
Q psy15524 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718 (930)
Q Consensus 639 ~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~ 718 (930)
..+...+...+... +++++|||+|....+.+++.+... +.. ..-+++..+|..+++.|+ +...||+||.
T Consensus 434 ~~~~~~i~~l~~~~----~g~~lvlF~Sy~~l~~v~~~l~~~---~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~ 502 (620)
T 4a15_A 434 DRMATVIEDIILKV----KKNTIVYFPSYSLMDRVENRVSFE---HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVS 502 (620)
T ss_dssp HHHHHHHHHHHHHH----CSCEEEEESCHHHHHHHTSSCCSC---CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEET
T ss_pred HHHHHHHHHHHHhC----CCCEEEEeCCHHHHHHHHHHHHhc---chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEe
Confidence 34444444443321 578999999999988888776521 222 455666678999999999 8888999985
Q ss_pred --ccccccCCCC--ccEEEEecCCCCh-----------------------------hhHHhhhcccccCCCCceEEEEeC
Q psy15524 719 --VAARGLDLPL--VDWIVQYTAPSSS-----------------------------TDYVHRVGRTARVGHEGSSLLFLI 765 (930)
Q Consensus 719 --~~~~GlDip~--v~~VI~~~~p~s~-----------------------------~~y~qr~GRagR~g~~g~~~~~~~ 765 (930)
.+++|||+|+ .+.||...+|... ....|-+||.-|...+-.+++++.
T Consensus 503 ~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 503 GGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp TSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred cCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 9999999985 5689988877521 112589999999877655566554
Q ss_pred cc
Q psy15524 766 PS 767 (930)
Q Consensus 766 ~~ 767 (930)
+.
T Consensus 583 ~R 584 (620)
T 4a15_A 583 KR 584 (620)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 155
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.71 E-value=1.9e-18 Score=203.97 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=98.3
Q ss_pred cCcHHHH-----HHHHHhh------cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHH
Q psy15524 5 QVTTVQQ-----LSIQPIL------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQT 73 (930)
Q Consensus 5 ~l~~~Q~-----~ai~~~~------~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~ 73 (930)
.||++|+ ++|+.++ +|+|++++||||||||++|++|+++.+.. .+.++||++||++|+.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHH
Confidence 8999999 9999988 89999999999999999999999988764 246799999999999999
Q ss_pred HHHHHHHhhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHH
Q psy15524 74 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD 153 (930)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~ 153 (930)
++.+..+. +....+... .....+.-+-+.+.+.+...+.. ...+.++++|||||+|++ +..+...
T Consensus 287 ~~~l~~~~-------i~~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~~-~~~~~~~ 351 (673)
T 2wv9_A 287 AEALRGLP-------VRYLTPAVQ-----REHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHFT-DPASIAA 351 (673)
T ss_dssp HHHTTTSC-------CEECCC--------CCCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTCC-CHHHHHH
T ss_pred HHHHhcCC-------eeeeccccc-----ccCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCccc-CccHHHH
Confidence 99886442 111111000 00001112334444544444433 245889999999999998 2222233
Q ss_pred HHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 154 IAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 154 ~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+..+...++ ..++|+++||||+++
T Consensus 352 ~~~l~~~~~--~~~~~vl~~SAT~~~ 375 (673)
T 2wv9_A 352 RGYIATRVE--AGEAAAIFMTATPPG 375 (673)
T ss_dssp HHHHHHHHH--TTSCEEEEECSSCTT
T ss_pred HHHHHHhcc--ccCCcEEEEcCCCCh
Confidence 333333332 245788888888865
No 156
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=6.7e-17 Score=167.08 Aligned_cols=139 Identities=19% Similarity=0.133 Sum_probs=108.7
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhcc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 492 (930)
..++++|.++++.++.++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~--- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF--- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG---
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC---
Confidence 37899999999999999999999999999999988877632 456999999999999999998873
Q ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 493 FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 493 ~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
+...+..+.|+.. ...+|+|+||+.+...... ...++++||+||||++.+.++.. ++..+
T Consensus 157 -~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~~----i~~~~-- 216 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-- 216 (237)
T ss_dssp -CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHHH----HHHTC--
T ss_pred -CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHHH----HHHhc--
Confidence 2222566666654 2579999999998766543 12468999999999998776543 33333
Q ss_pred cCccceEEEEccccCH
Q psy15524 573 QKPQFQSILLSATLTP 588 (930)
Q Consensus 573 ~~~~~q~vl~SAT~~~ 588 (930)
+..+++++|||++.
T Consensus 217 --~~~~~l~LSATp~r 230 (237)
T 2fz4_A 217 --IAPFRLGLTATFER 230 (237)
T ss_dssp --CCSEEEEEEESCC-
T ss_pred --cCCEEEEEecCCCC
Confidence 25688999999975
No 157
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.70 E-value=2.8e-18 Score=194.57 Aligned_cols=133 Identities=19% Similarity=0.214 Sum_probs=91.6
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCC
Q psy15524 16 PILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGG 95 (930)
Q Consensus 16 ~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~ 95 (930)
.+++|+|+++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+..+. +....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~~-------v~~~~~~ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD-------VKFHTQA 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC-------EEEESSC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcCC-------eEEeccc
Confidence 46789999999999999999999999998764 24579999999999999999886432 2211111
Q ss_pred CchHHHHHHhcCCCcEEEEChHHHHHHHhc-------CCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCc
Q psy15524 96 EKMKSEKARIRKGISILVATPGRLLDHCKH-------TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 168 (930)
Q Consensus 96 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-------~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~ 168 (930)
.. .++||+++.+++.. .....+.++++|||||+|++ +.++...+..+...+. ..++
T Consensus 69 ~~--------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~--~~~~ 131 (440)
T 1yks_A 69 FS--------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR--ANES 131 (440)
T ss_dssp CC--------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--TTSC
T ss_pred ce--------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--cCCc
Confidence 00 25666555433221 02234789999999999998 4444444333333332 3457
Q ss_pred eEEEEEeecCCC
Q psy15524 169 QSILLSATLTPA 180 (930)
Q Consensus 169 ~~i~lSAT~~~~ 180 (930)
|+++||||+++.
T Consensus 132 ~~l~~SAT~~~~ 143 (440)
T 1yks_A 132 ATILMTATPPGT 143 (440)
T ss_dssp EEEEECSSCTTC
T ss_pred eEEEEeCCCCch
Confidence 888888888764
No 158
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.69 E-value=7.9e-17 Score=182.26 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=93.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
+|+++++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+.. ..+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~~-------~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALRG-------EPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-------SCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhCC-------CeEEEEecCccc
Confidence 47899999999999999999999977654 245799999999999999987751 334444443211
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 99 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 99 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
.-..+.-+.+.|.+.+...+.. ...+.++++|||||+|++ +.++......+.... ..+++++++||||++
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~ 135 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRV--SMGDAGAIFMTATPP 135 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH--HTTSCEEEEEESSCT
T ss_pred -----cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHh--hCCCCcEEEEeCCCC
Confidence 1112345677888888766554 345789999999999997 433333333333332 235689999999997
Q ss_pred C
Q psy15524 179 P 179 (930)
Q Consensus 179 ~ 179 (930)
+
T Consensus 136 ~ 136 (431)
T 2v6i_A 136 G 136 (431)
T ss_dssp T
T ss_pred c
Confidence 6
No 159
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.68 E-value=1.6e-16 Score=164.20 Aligned_cols=138 Identities=20% Similarity=0.143 Sum_probs=108.3
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+++|+++++.++++.++++++|||+|||.+++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 6899999999999999999999999999999998887642 235999999999999999998873
Q ss_pred CCce-eEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 85 TWIV-PSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 85 ~~~~-~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
+ .. +..+.|+.. ...+|+|+||+.+...... ....+++|||||+|++.+..+.. ++..+
T Consensus 157 ~-~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~~----i~~~~-- 216 (237)
T 2fz4_A 157 G-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-- 216 (237)
T ss_dssp C-GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHHH----HHHTC--
T ss_pred C-CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHHH----HHHhc--
Confidence 2 44 666666653 2578999999998776542 12568999999999998776543 33222
Q ss_pred cCCCceEEEEEeecCCC
Q psy15524 164 QKPQFQSILLSATLTPA 180 (930)
Q Consensus 164 ~~~~~~~i~lSAT~~~~ 180 (930)
+..++++|||||.+.
T Consensus 217 --~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 --IAPFRLGLTATFERE 231 (237)
T ss_dssp --CCSEEEEEEESCC--
T ss_pred --cCCEEEEEecCCCCC
Confidence 356899999999763
No 160
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.68 E-value=3e-17 Score=187.26 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=91.4
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeC
Q psy15524 15 QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG 94 (930)
Q Consensus 15 ~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g 94 (930)
..+.+|+++++++|||||||++|++|+++.+.. .+.++||++||++|+.|+++++... .+....+
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~~ 80 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL-------PVRYQTS 80 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS-------CEEECC-
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc-------eEeEEec
Confidence 345678899999999999999999999988764 2456999999999999999988622 1221111
Q ss_pred CCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccc-----cccCcHHHHHHHHHHHhhcCCCce
Q psy15524 95 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI-----LDQGYERDIAEFLEILKKQKPQFQ 169 (930)
Q Consensus 95 ~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~-----~~~~~~~~~~~i~~~l~~~~~~~~ 169 (930)
.... .-..+..+.++|.+.+...+.. ...++++++|||||||++ +..++... .. ..+++|
T Consensus 81 ~~~~-----~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~------~~--~~~~~~ 145 (459)
T 2z83_A 81 AVQR-----EHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIAT------KV--ELGEAA 145 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHH------HH--HTTSCE
T ss_pred cccc-----CCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHH------Hh--ccCCcc
Confidence 1110 0122345778888888776654 245789999999999984 33332211 11 124678
Q ss_pred EEEEEeecCC
Q psy15524 170 SILLSATLTP 179 (930)
Q Consensus 170 ~i~lSAT~~~ 179 (930)
+++||||++.
T Consensus 146 ~il~SAT~~~ 155 (459)
T 2z83_A 146 AIFMTATPPG 155 (459)
T ss_dssp EEEECSSCTT
T ss_pred EEEEEcCCCc
Confidence 8888888865
No 161
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.67 E-value=5.4e-16 Score=186.66 Aligned_cols=158 Identities=21% Similarity=0.246 Sum_probs=103.1
Q ss_pred ccCcHHHHHHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPILD-GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~-g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
..|++.|+++|+.++. |++++++||||||||. ++|++-.... .. ...+.++++++|+++|+.|+++++.....
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~-~~---~~~g~~ilvl~P~r~La~q~~~~l~~~~~ 165 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE-MP---HLENTQVACTQPRRVAAMSVAQRVAEEMD 165 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH-CG---GGGTCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc-cc---cCCCceEEecCchHHHHHHHHHHHHHHhC
Confidence 3588899999998774 5689999999999999 5665522211 00 11256799999999999999988766543
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccc-ccccCcHHHHHHHHHHH
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADR-ILDQGYERDIAEFLEIL 161 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~-~~~~~~~~~~~~i~~~l 161 (930)
......++....... ....+.+|+++||+++.+.+... ..+.++++|||||+|. .++..+ +..++..+
T Consensus 166 ~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah~R~ld~d~---~~~~l~~l 234 (773)
T 2xau_A 166 VKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAHERTLATDI---LMGLLKQV 234 (773)
T ss_dssp CCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGGGCCHHHHH---HHHHHHHH
T ss_pred Cchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCccccccchHH---HHHHHHHH
Confidence 111112221111111 11245789999999999877642 3588999999999995 554322 22233333
Q ss_pred hhcCCCceEEEEEeecC
Q psy15524 162 KKQKPQFQSILLSATLT 178 (930)
Q Consensus 162 ~~~~~~~~~i~lSAT~~ 178 (930)
....++.+++++|||++
T Consensus 235 ~~~~~~~~iIl~SAT~~ 251 (773)
T 2xau_A 235 VKRRPDLKIIIMSATLD 251 (773)
T ss_dssp HHHCTTCEEEEEESCSC
T ss_pred HHhCCCceEEEEecccc
Confidence 33345667777777774
No 162
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.67 E-value=1.4e-16 Score=195.22 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=114.0
Q ss_pred cCcHHHHHHHHHhhc--------------CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHH
Q psy15524 5 QVTTVQQLSIQPILD--------------GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 70 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~--------------g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~ 70 (930)
.|+|+|.+|++.+++ +++.+++++||||||+++ ++++..+.. .....++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~------~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE------LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT------CTTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh------cCCCceEEEEeCcHHHH
Confidence 599999999999875 368999999999999997 666655432 12235799999999999
Q ss_pred HHHHHHHHHHhhhcCCceeEEeeCCCchHHHHHHhc-CCCcEEEEChHHHHHHHhcCC-CccCCCccEEEEccccccccc
Q psy15524 71 LQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADRILDQ 148 (930)
Q Consensus 71 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~-~~~l~~l~~vViDE~h~~~~~ 148 (930)
.|+.+.+..+... .+.++.+.......+. .+++|+|+||+++...+.... ...+....+||+||||++...
T Consensus 344 ~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~ 416 (1038)
T 2w00_A 344 YQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG 416 (1038)
T ss_dssp HHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH
T ss_pred HHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch
Confidence 9999999887542 1234445555555553 568999999999998775432 223567899999999997642
Q ss_pred CcHHHHHHHHHHHhhcCCCceEEEEEeecCCC
Q psy15524 149 GYERDIAEFLEILKKQKPQFQSILLSATLTPA 180 (930)
Q Consensus 149 ~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~~ 180 (930)
+ .+..+...+ ++.+++||||||...
T Consensus 417 ~---~~~~I~~~~----p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 417 E---AQKNLKKKF----KRYYQFGFTGTPIFP 441 (1038)
T ss_dssp H---HHHHHHHHC----SSEEEEEEESSCCCS
T ss_pred H---HHHHHHHhC----CcccEEEEeCCcccc
Confidence 2 233444333 457999999999753
No 163
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.65 E-value=5.8e-16 Score=162.69 Aligned_cols=128 Identities=15% Similarity=0.247 Sum_probs=96.4
Q ss_pred CchhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcC-CC
Q psy15524 633 PPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV-KS 711 (930)
Q Consensus 633 ~~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~-~~ 711 (930)
....|+..+..++..... .+.++||||.+...++.+...|.... |+.+..+||++++.+|..++++|+++ ..
T Consensus 93 ~~s~K~~~L~~ll~~~~~-----~~~kvlIFs~~~~~~~~l~~~L~~~~--g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKEL--NTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHHHHHH--CSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHHh-----CCCeEEEEeccHHHHHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 456788888888876532 26799999999999999999997632 56777889999999999999999998 66
Q ss_pred c-EEEeccccccccCCCCccEEEEecCCCChhhHHhhhcccccCCCCceE--EEEeCcc
Q psy15524 712 G-VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS--LLFLIPS 767 (930)
Q Consensus 712 ~-vLv~T~~~~~GlDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~g~~--~~~~~~~ 767 (930)
. +|+||+++++|+|++++++||+||+|+++..|.||+||++|.|+.+.+ +.|++..
T Consensus 166 ~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred CEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 6 789999999999999999999999999999999999999999998765 3445544
No 164
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.52 E-value=1.3e-13 Score=159.99 Aligned_cols=149 Identities=19% Similarity=0.147 Sum_probs=105.0
Q ss_pred cCcHHHHHHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPI----LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~----~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
.|+|+|.++++.+ ..|.+++++.+||+|||++++..+...... ....++|||+| .+|+.|+.++++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-------~~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-------NELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-------TCCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-------CCCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 6999999999876 357899999999999999976555443322 22345999999 56999999999988
Q ss_pred hhhcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHH
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~ 160 (930)
+.. ..+..+.|+... .....++|+|+||+.+..... +....+++||+||||++...+. .....+..
T Consensus 109 ~~~---~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~ 174 (500)
T 1z63_A 109 APH---LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKE 174 (500)
T ss_dssp CTT---SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHT
T ss_pred CCC---ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHh
Confidence 643 445555555421 112357999999999865432 3345789999999999975542 12223333
Q ss_pred HhhcCCCceEEEEEeecCC
Q psy15524 161 LKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 161 l~~~~~~~~~i~lSAT~~~ 179 (930)
+ +..++++|||||..
T Consensus 175 l----~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 175 L----KSKYRIALTGTPIE 189 (500)
T ss_dssp S----CEEEEEEECSSCST
T ss_pred h----ccCcEEEEecCCCC
Confidence 3 23478999999954
No 165
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.51 E-value=6.1e-14 Score=173.59 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=109.3
Q ss_pred cCcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILD--GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~--g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
+|+|+|.+++..++. +.++|++++||+|||++++..+...+.. ....++|||+|+ +|+.|+.+.+.+.+.
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-------g~~~rvLIVvP~-sLl~Qw~~E~~~~f~ 224 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-------GAAERVLIIVPE-TLQHQWLVEMLRRFN 224 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-------SSCCCEEEECCT-TTHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-------CCCCeEEEEeCH-HHHHHHHHHHHHHhC
Confidence 689999999998876 4589999999999999998887766643 223359999999 999999999987762
Q ss_pred hcCCceeEEeeCCCchHHHHH--HhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcH-HHHHHHHH
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKA--RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLE 159 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~--~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~-~~~~~i~~ 159 (930)
..+..+.++........ ......+|+|+|++.+.........+...++++|||||||++...+.. ......+.
T Consensus 225 ----l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 225 ----LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp ----CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred ----CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 34444433322111111 112347999999998864322212234568999999999999755422 12233344
Q ss_pred HHhhcCCCceEEEEEeecCC
Q psy15524 160 ILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 160 ~l~~~~~~~~~i~lSAT~~~ 179 (930)
.+.. ...++++|||||.+
T Consensus 301 ~L~~--~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 301 QLAE--HVPGVLLLTATPEQ 318 (968)
T ss_dssp HHHT--TCSSEEESCSSCSS
T ss_pred HHhh--cCCcEEEEEcCCcc
Confidence 4432 23469999999954
No 166
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.49 E-value=1.8e-14 Score=169.35 Aligned_cols=132 Identities=21% Similarity=0.098 Sum_probs=95.2
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeC
Q psy15524 15 QPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG 94 (930)
Q Consensus 15 ~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g 94 (930)
...+.|++++++||||||||+ +++..+... ..++|++||++||.|+++++++.+ ..+..++|
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~~---------~~gl~l~PtR~LA~Qi~~~l~~~g-----~~v~lltG 211 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---------KSGVYCGPLKLLAHEIFEKSNAAG-----VPCDLVTG 211 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHHS---------SSEEEEESSHHHHHHHHHHHHHTT-----CCEEEECS
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------CCeEEEeCHHHHHHHHHHHHHhcC-----CcEEEEEC
Confidence 345688999999999999998 444444431 125999999999999999998763 56777778
Q ss_pred CCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 95 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 95 ~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
+...... .-....+++++|++.+. ....+++|||||+|++++.+|+..+..++..++. ...+++++|
T Consensus 212 ~~~~iv~--TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~--~~i~il~~S 278 (677)
T 3rc3_A 212 EERVTVQ--PNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA--EEVHLCGEP 278 (677)
T ss_dssp SCEECCS--TTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE--EEEEEEECG
T ss_pred CeeEEec--CCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCc--cceEEEecc
Confidence 7654100 00112678888876431 2467899999999999999999988887776652 345677777
Q ss_pred eec
Q psy15524 175 ATL 177 (930)
Q Consensus 175 AT~ 177 (930)
||.
T Consensus 279 AT~ 281 (677)
T 3rc3_A 279 AAI 281 (677)
T ss_dssp GGH
T ss_pred chH
Confidence 773
No 167
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.44 E-value=3e-13 Score=157.99 Aligned_cols=132 Identities=17% Similarity=0.061 Sum_probs=98.1
Q ss_pred CCccCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQP----ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 77 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~----~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~ 77 (930)
|| +++|.|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHH
Confidence 56 699999997765 4578999999999999999999999971 457999999999999999988
Q ss_pred HHHhhhcCCceeEEeeCCCch---------------------------------HHH------------------HHHhc
Q psy15524 78 TKLCKSFTWIVPSWLTGGEKM---------------------------------KSE------------------KARIR 106 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~g~~~~---------------------------------~~~------------------~~~l~ 106 (930)
..+....+ +.+..+.|..+. ... .....
T Consensus 68 ~~l~~~~~-~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 68 TKIREKRN-ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TTCCCSSC-CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHhhhcC-ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 88755433 444444442210 011 12234
Q ss_pred CCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 107 KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 107 ~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
..+||||+|+..|.+...+...........+||||||.+.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 56899999999998875443321224678999999999987
No 168
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.39 E-value=1.6e-11 Score=145.90 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=108.3
Q ss_pred cCcHHHHHHHHHhh---------cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL---------DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~---------~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
.|+|+|.+++..+. .+.+.|++.+||.|||+.++..+...+...... .....++|||+|+ +|+.|+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~--~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC--KPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS--SCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc--cCCCCcEEEEecH-HHHHHHHH
Confidence 68999999998863 456799999999999999877776554432110 1123458999997 89999999
Q ss_pred HHHHHhhhcCCceeEEeeCCCchHHHH---HHhcC-----CCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 76 IFTKLCKSFTWIVPSWLTGGEKMKSEK---ARIRK-----GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-----~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
++.+++.. ......+.++....... ..... ..+|+|+|++.+.... ..+....+++||+||||++-.
T Consensus 132 E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---EVLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---TTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH---HHhhcCCccEEEEECceecCC
Confidence 99999754 23344455554332211 11211 3789999999987653 233445789999999999864
Q ss_pred cCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 148 QGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 148 ~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
... .....+..++ ..+.++|||||-.
T Consensus 207 ~~~--~~~~al~~l~----~~~rl~LTgTPiq 232 (644)
T 1z3i_X 207 SDN--QTYLALNSMN----AQRRVLISGTPIQ 232 (644)
T ss_dssp TCH--HHHHHHHHHC----CSEEEEECSSCSG
T ss_pred hhh--HHHHHHHhcc----cCcEEEEecCccc
Confidence 331 2223333332 3478999999954
No 169
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=4.5e-12 Score=154.64 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=108.5
Q ss_pred cCcHHHHHHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPIL----DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~----~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+|+|.+++..+. .+.+.|++.+||.|||+.++..+...+..... ...+|||+| .+|+.|+.+++.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~------~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ------NGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC------CSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC------CCCEEEEEC-chHHHHHHHHHHHH
Confidence 68999999998665 78899999999999999977766555443221 234899999 78999999999988
Q ss_pred hhhcCCceeEEeeCCCchHHHHHH------------hcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccccc
Q psy15524 81 CKSFTWIVPSWLTGGEKMKSEKAR------------IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ 148 (930)
Q Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~------------l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~ 148 (930)
+. ...+..+.|+......... ....++|+|+|++.+...... +....+++|||||||++-..
T Consensus 309 ~p---~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 309 AP---DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp ST---TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCS
T ss_pred CC---CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCc
Confidence 64 3566666666554433222 123478999999999765332 22336789999999998543
Q ss_pred CcHHHHHHHHHHHhhcCCCceEEEEEeecC
Q psy15524 149 GYERDIAEFLEILKKQKPQFQSILLSATLT 178 (930)
Q Consensus 149 ~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~ 178 (930)
.- .....+..+ .....++|||||-
T Consensus 383 ~s--~~~~~l~~l----~~~~rl~LTgTPi 406 (800)
T 3mwy_W 383 ES--SLYESLNSF----KVANRMLITGTPL 406 (800)
T ss_dssp SS--HHHHHHTTS----EEEEEEEECSCCC
T ss_pred hh--HHHHHHHHh----hhccEEEeeCCcC
Confidence 21 222223223 2346799999994
No 170
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.30 E-value=2.2e-12 Score=150.00 Aligned_cols=128 Identities=17% Similarity=0.152 Sum_probs=85.4
Q ss_pred CCCccCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQP----ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~----~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 76 (930)
+|| +|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHH
Confidence 477 799999998754 4578999999999999999999998753 35699999999999999988
Q ss_pred HHHHhhhcCCceeEEeeCCCc--------hH---------------------------------------HHHHHhcCCC
Q psy15524 77 FTKLCKSFTWIVPSWLTGGEK--------MK---------------------------------------SEKARIRKGI 109 (930)
Q Consensus 77 ~~~~~~~~~~~~~~~~~g~~~--------~~---------------------------------------~~~~~l~~~~ 109 (930)
+..+. ..+..+.|... .. ...+.....+
T Consensus 71 ~~~l~-----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 71 AKLLG-----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HGGGT-----CCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHhcC-----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 87642 22222222110 00 0001112357
Q ss_pred cEEEEChHHHHHHHhcCCCc------cCCCccEEEEccccccc
Q psy15524 110 SILVATPGRLLDHCKHTETL------KFSKVEHLVLDEADRIL 146 (930)
Q Consensus 110 ~Ilv~Tp~~l~~~l~~~~~~------~l~~l~~vViDE~h~~~ 146 (930)
+|+|+|+..+.+........ .+.....+||||||.+.
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999999998754331111 23567899999999993
No 171
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.26 E-value=2.1e-10 Score=130.95 Aligned_cols=301 Identities=15% Similarity=0.107 Sum_probs=172.5
Q ss_pred CCccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
|. .|++.|.-..-.+..|+ +..+.||+|||+++.+|++-..+. |..+.|++|+..||.|-++.+..+.
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 44 47899998888888886 999999999999999999754433 4559999999999999999999999
Q ss_pred hhcCCceeEEeeCCC-------------------------------------------------chHHHHHHhcCCCcEE
Q psy15524 82 KSFTWIVPSWLTGGE-------------------------------------------------KMKSEKARIRKGISIL 112 (930)
Q Consensus 82 ~~~~~~~~~~~~g~~-------------------------------------------------~~~~~~~~l~~~~~Il 112 (930)
..++ +.+++..... ......+. .-.|||.
T Consensus 141 ~~Lg-lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~-aY~~DIt 218 (822)
T 3jux_A 141 LFLG-LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE-AYLCDVT 218 (822)
T ss_dssp HHTT-CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH-HHHSSEE
T ss_pred HHhC-CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH-HhcCCCE
Confidence 8877 6777666620 00011111 1237999
Q ss_pred EEChHHHH-HHHhc-----CCCccCCCccEEEEccccccc-ccCcH-----------HH-HHHHHHHHhhcC--------
Q psy15524 113 VATPGRLL-DHCKH-----TETLKFSKVEHLVLDEADRIL-DQGYE-----------RD-IAEFLEILKKQK-------- 165 (930)
Q Consensus 113 v~Tp~~l~-~~l~~-----~~~~~l~~l~~vViDE~h~~~-~~~~~-----------~~-~~~i~~~l~~~~-------- 165 (930)
+||..-+- +.|+. ......+.+.+.||||+|.++ |..+- .. +..+-...+...
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 99998763 33332 122335789999999999864 43321 11 112111112111
Q ss_pred CCceEEEEEeec--------CCCccccccc-------------cccccccccchhh-------hhh-hhh-hhccchhhH
Q psy15524 166 PQFQSILLSATL--------TPATCWCKHT-------------ETLKFSKVEHLVL-------DEA-DRI-LDQGYERDI 215 (930)
Q Consensus 166 ~~~~~i~lSAT~--------~~~~~~~~~~-------------~~~~~~~~~~~~~-------de~-~~~-~~~~~~~~~ 215 (930)
..-+.+.||..- .-.+.+-... ..+...++.++|. ||. .++ -+..+.+.+
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 112233333210 0000110000 0001111222222 221 111 112233333
Q ss_pred HHHHHHHhhc---C---------------cCceEEEEecccchHHHHhhhccccCCeeeccCCcccccCCCcccccCCCc
Q psy15524 216 AEFLEILKKQ---K---------------PQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 277 (930)
Q Consensus 216 ~~~~~~~~~~---~---------------~~~q~~~~sat~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i 277 (930)
...++.-... + .......+|+|.......+...|--+.+. +.... ....+
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~--IPtnk----------p~~R~ 446 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVV--IPTHK----------PMIRK 446 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEE--CCCSS----------CCCCE
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEE--ECCCC----------Cccee
Confidence 3333321110 0 11257778899988877777776433222 22211 01122
Q ss_pred ee-EEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhhh
Q psy15524 278 KQ-HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKK 333 (930)
Q Consensus 278 ~~-~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~ 333 (930)
.+ .++......|..+++..+.. ....+.|+||||+|++.++.++..|+..|
T Consensus 447 d~~d~vy~t~~eK~~al~~~I~~-----~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G 498 (822)
T 3jux_A 447 DHDDLVFRTQKEKYEKIVEEIEK-----RYKKGQPVLVGTTSIEKSELLSSMLKKKG 498 (822)
T ss_dssp ECCCEEESSHHHHHHHHHHHHHH-----HHHHTCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred ecCcEEEecHHHHHHHHHHHHHH-----HhhCCCCEEEEECCHHHHHHHHHHHHHCC
Confidence 22 34556778899999988854 12356799999999999999999998654
No 172
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.00 E-value=8e-10 Score=129.83 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=60.7
Q ss_pred cCcHHHHHHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQP----ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 5 ~l~~~Q~~ai~~----~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+|+|.|.+.+.. +.+|+++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--------~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--------RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--------HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--------cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 589999999864 4579999999999999999999999998764 2457999999999999999999888
Q ss_pred hhh
Q psy15524 81 CKS 83 (930)
Q Consensus 81 ~~~ 83 (930)
...
T Consensus 75 ~~~ 77 (620)
T 4a15_A 75 SST 77 (620)
T ss_dssp HHH
T ss_pred hhc
Confidence 653
No 173
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.66 E-value=5.2e-08 Score=114.40 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=86.2
Q ss_pred CHHHHHhHHhhhcCCcEEEEccCCCchh--HHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 416 TTVQQLSIQPILDGGDVLVRSQTGSGKT--LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 416 ~~iQ~~~i~~il~~~d~lv~a~TGsGKT--l~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
+++|+.+++.++.++++++.+++||||| ++++++.+..+.. ..+.++++++||.++|.++.+.+.......
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999 6667777654321 246789999999999999988877655433
Q ss_pred CCcceEEEeCCCchHHHHHHHhcCC-cEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhh
Q psy15524 494 TWIVPSWLTGGEKMKSEKARIRKGI-SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572 (930)
Q Consensus 494 ~~~~~~~~~gg~~~~~~~~~~~~~~-~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~ 572 (930)
+... ... .+... . .... .++-.+|+... +.... .....++++|||||+++ + ...+..++..++
T Consensus 224 ~l~~-~~~-~~~~~--~----~~Tih~ll~~~~~~~~--~~~~~-~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~- 287 (608)
T 1w36_D 224 PLTD-EQK-KRIPE--D----ASTLHRLLGAQPGSQR--LRHHA-GNPLHLDVLVVDEASMI-D---LPMMSRLIDALP- 287 (608)
T ss_dssp SCCS-CCC-CSCSC--C----CBTTTSCC-------------CT-TSCCSCSEEEECSGGGC-B---HHHHHHHHHTCC-
T ss_pred CCCH-HHH-hccch--h----hhhhHhhhccCCCchH--HHhcc-CCCCCCCEEEEechhhC-C---HHHHHHHHHhCC-
Confidence 2100 000 00000 0 0000 11222333210 11111 11237899999999954 3 344555655553
Q ss_pred cCccceEEEEccc
Q psy15524 573 QKPQFQSILLSAT 585 (930)
Q Consensus 573 ~~~~~q~vl~SAT 585 (930)
...|++++.-.
T Consensus 288 --~~~~liLvGD~ 298 (608)
T 1w36_D 288 --DHARVIFLGDR 298 (608)
T ss_dssp --TTCEEEEEECT
T ss_pred --CCCEEEEEcch
Confidence 47788887543
No 174
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.40 E-value=3.7e-07 Score=107.12 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=85.1
Q ss_pred cHHHHHHHHHhhcCCcEEEEcCCCChHH--HHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 7 TTVQQLSIQPILDGGDVLVRSQTGSGKT--LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~~~lv~apTGsGKT--~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
++.|+.|++.++.++.+++.||+|+||| ++++++.+..+.. ..+.++++++||..++.++.+.+.......
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999 5677777665421 224569999999999999998887766543
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCc-EEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGIS-ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 163 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~-Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~ 163 (930)
+ +..... .+... .....+ ++-.+|+.. .+ .. .......+++|||||+++ ++ .+.+..++..+
T Consensus 224 ~-l~~~~~-~~~~~------~~~Tih~ll~~~~~~~-~~-~~-~~~~~l~~d~lIIDEAsm-l~---~~~~~~Ll~~l-- 286 (608)
T 1w36_D 224 P-LTDEQK-KRIPE------DASTLHRLLGAQPGSQ-RL-RH-HAGNPLHLDVLVVDEASM-ID---LPMMSRLIDAL-- 286 (608)
T ss_dssp S-CCSCCC-CSCSC------CCBTTTSCC--------------CTTSCCSCSEEEECSGGG-CB---HHHHHHHHHTC--
T ss_pred C-CCHHHH-hccch------hhhhhHhhhccCCCch-HH-Hh-ccCCCCCCCEEEEechhh-CC---HHHHHHHHHhC--
Confidence 3 110000 00000 001111 222233221 11 11 111123789999999994 44 34556665544
Q ss_pred cCCCceEEEEEe
Q psy15524 164 QKPQFQSILLSA 175 (930)
Q Consensus 164 ~~~~~~~i~lSA 175 (930)
+...|++++--
T Consensus 287 -~~~~~liLvGD 297 (608)
T 1w36_D 287 -PDHARVIFLGD 297 (608)
T ss_dssp -CTTCEEEEEEC
T ss_pred -CCCCEEEEEcc
Confidence 34456666543
No 175
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.25 E-value=2.4e-06 Score=101.28 Aligned_cols=68 Identities=28% Similarity=0.311 Sum_probs=52.8
Q ss_pred CCccCcHHHHHHHHHhhc----CC-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHH
Q psy15524 2 NITQVTTVQQLSIQPILD----GG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76 (930)
Q Consensus 2 g~~~l~~~Q~~ai~~~~~----g~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 76 (930)
|| .|++.|.+++..+.+ |. ..++.+.||||||+++.-.+ .... ..+|||+|+..+|.|+++.
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~~-----------~~~lvv~~~~~~A~ql~~e 72 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EALG-----------RPALVLAPNKILAAQLAAE 72 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHT-----------CCEEEEESSHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHhC-----------CCEEEEecCHHHHHHHHHH
Confidence 56 799999999987653 33 46788999999999755333 3321 1299999999999999999
Q ss_pred HHHHhh
Q psy15524 77 FTKLCK 82 (930)
Q Consensus 77 ~~~~~~ 82 (930)
|+.++.
T Consensus 73 l~~~~~ 78 (664)
T 1c4o_A 73 FRELFP 78 (664)
T ss_dssp HHHHCT
T ss_pred HHHHCC
Confidence 999964
No 176
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.07 E-value=1.9e-05 Score=93.48 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=50.3
Q ss_pred cCcHHHHHHHHHhhc----CC-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILD----GG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~----g~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
.|+..|..++..+.+ |. ..++.+.||||||++..-.+ .... ..+|||+|+..+|.|+++.|+.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~-~~~~-----------~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI-KEVN-----------KPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHC-----------CCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH-HHhC-----------CCEEEEECCHHHHHHHHHHHHH
Confidence 588999999886553 43 47788999999998654322 2221 1289999999999999999999
Q ss_pred Hhh
Q psy15524 80 LCK 82 (930)
Q Consensus 80 ~~~ 82 (930)
++.
T Consensus 80 ~~~ 82 (661)
T 2d7d_A 80 FFP 82 (661)
T ss_dssp HCT
T ss_pred HcC
Confidence 964
No 177
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.77 E-value=7.8e-05 Score=88.50 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=53.5
Q ss_pred CCCHHHHHhHHhhhcCCc-EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 414 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d-~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
.+++-|.+|+..++..++ .+|+||.|||||.+..- ++..+.. .+.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~--------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK--------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH--------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh--------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 577889999999998877 78999999999988444 3333433 2568999999999999998887654
No 178
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.74 E-value=0.00012 Score=83.14 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=52.0
Q ss_pred CCCCCCCHHHHHhHHhhhcC----C-cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHH
Q psy15524 410 MNITQVTTVQQLSIQPILDG----G-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 484 (930)
Q Consensus 410 ~~~~~~~~iQ~~~i~~il~~----~-d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 484 (930)
+.|..+++-|++++..++.. + .+++.|+.|||||.+ +..++..+... ....+++++||...|..+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALIST-------GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCCEEEEESSHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhc-------CCceEEEecCcHHHHHHHHh
Confidence 67888999999999887643 3 799999999999975 44555555541 12468999999988876665
Q ss_pred HH
Q psy15524 485 IF 486 (930)
Q Consensus 485 ~~ 486 (930)
.+
T Consensus 93 ~~ 94 (459)
T 3upu_A 93 LS 94 (459)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 179
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.72 E-value=0.00022 Score=84.10 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=55.7
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+..+++.|.+|+..++.+.-.++.||+|+|||.+. ..++..+.. ..+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 34678899999999887777899999999999873 444444443 24668999999999999999887654
No 180
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.69 E-value=9.9e-05 Score=85.56 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=51.0
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.+++.|.+++..++.++.+++.++.|+|||.+ +..++..+.. .+.++++++||...+.++.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES--------LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhh
Confidence 56788999999999888899999999999976 4445544443 3677999999999988776543
No 181
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.69 E-value=7e-05 Score=88.89 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=54.6
Q ss_pred ccCcHHHHHHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~-~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
..|++.|++|+..++..++ .||+||.|+|||.+..-.+.+.+.. +.++|+++||..=+.++.+++...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3589999999999987665 7999999999998855555444432 456999999999999999888654
No 182
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.56 E-value=0.00034 Score=79.24 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCCccCcHHHHHHHHHhhcC----C-cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHH
Q psy15524 1 MNITQVTTVQQLSIQPILDG----G-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLE 75 (930)
Q Consensus 1 ~g~~~l~~~Q~~ai~~~~~g----~-~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~ 75 (930)
+.|..|++-|++|+..++.. . .+++.||.|+|||.+. ..++..+.... ...+++++||...+..+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-------~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-------ETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-------CCCEEEEESSHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-------CceEEEecCcHHHHHHHHh
Confidence 45788999999999976532 3 8999999999999754 34444554321 1248999999998877665
Q ss_pred HH
Q psy15524 76 IF 77 (930)
Q Consensus 76 ~~ 77 (930)
.+
T Consensus 93 ~~ 94 (459)
T 3upu_A 93 LS 94 (459)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 183
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.54 E-value=0.00044 Score=81.48 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=54.9
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
..+++.|.+|+..++.+.-++|.||+|+|||.+... ++..+.. ..+.++|+++||..-+.++.+++.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT-------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH-------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 468999999999998877899999999999987543 3344432 12456999999999999999888654
No 184
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.52 E-value=0.00047 Score=82.91 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=56.0
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
...+++.|.+|+..++.+.-.++.||.|+|||.+ +..++..+.. ..+.++++++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~-------~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLAR-------QGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHT-------TCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4467899999999998877789999999999987 4445555543 13668999999999999998887654
No 185
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00079 Score=81.06 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=55.7
Q ss_pred CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHh
Q psy15524 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 489 (930)
Q Consensus 412 ~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 489 (930)
+..+++.|.+|+..++.+.-.+|.||.|||||.+. ..++..+... .+.++++++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45688999999999987767899999999999874 3344444331 2567999999999999999988765
No 186
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00075 Score=81.30 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=55.4
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
+..|++.|++|+..++.+.-++|.||.|+|||.+..--+ ..+... .+.++|+++||..-+.++.+++.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 346899999999999887779999999999998754433 333321 1345999999999999999998775
No 187
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.37 E-value=0.00086 Score=77.68 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=49.6
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHH
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~ 76 (930)
.+++.|++|+..++.+..+++.+|.|+|||... ..++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhh
Confidence 589999999999999899999999999999763 334444433 245599999999988876654
No 188
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.32 E-value=0.00099 Score=80.14 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=54.7
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKL 80 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~ 80 (930)
..+++.|.+|+..++.+.-++|.||+|+|||.+.. .++..+... .+.++++++||..-+.++.+++.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 46899999999999888789999999999998744 334444331 2456999999999999998887654
No 189
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.10 E-value=0.003 Score=68.64 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=59.7
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..+.. .++..+++++|+.+-|..+++.++.+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 5899999999877555668999999999999877766654433 235679999999999999999888887655
Q ss_pred C
Q psy15524 85 T 85 (930)
Q Consensus 85 ~ 85 (930)
+
T Consensus 236 P 236 (385)
T 2o0j_A 236 P 236 (385)
T ss_dssp C
T ss_pred h
Confidence 4
No 190
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.90 E-value=0.0031 Score=68.61 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=58.2
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. .++..+++++||++-|..+++.+..+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 6899999999876555668999999999999866655544432 346789999999999999988888777654
Q ss_pred C
Q psy15524 494 T 494 (930)
Q Consensus 494 ~ 494 (930)
+
T Consensus 236 P 236 (385)
T 2o0j_A 236 P 236 (385)
T ss_dssp C
T ss_pred h
Confidence 4
No 191
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.49 E-value=0.0099 Score=69.40 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=59.9
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.|+|+|+..+..+...+..++..+-|+|||.+....++..+.. .++..+++++|+.+.+..+++.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 4899999999877556779999999999999877665555543 235579999999999999999898887765
Q ss_pred C
Q psy15524 85 T 85 (930)
Q Consensus 85 ~ 85 (930)
+
T Consensus 236 p 236 (592)
T 3cpe_A 236 P 236 (592)
T ss_dssp C
T ss_pred h
Confidence 4
No 192
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.46 E-value=0.008 Score=70.21 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=58.8
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccC
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 493 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 493 (930)
.++|+|...+..+-..+-+++..+-|+|||.+...-++..+.. .++..+++++|+++.|..+++.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 5899999999877556779999999999999866555544432 346689999999999999998888887655
Q ss_pred C
Q psy15524 494 T 494 (930)
Q Consensus 494 ~ 494 (930)
+
T Consensus 236 p 236 (592)
T 3cpe_A 236 P 236 (592)
T ss_dssp C
T ss_pred h
Confidence 4
No 193
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=96.42 E-value=0.0029 Score=62.06 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=43.8
Q ss_pred hccccCCeeeccCCcccccCCCcccccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhH
Q psy15524 247 GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 326 (930)
Q Consensus 247 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~ 326 (930)
..|+.+|..+.+.... ..+.++.+.+..++...|...|..++.. .+.++||||+++..++.++
T Consensus 9 ~~~~~~p~~i~v~~~~---------~~~~~i~q~~~~~~~~~K~~~L~~~l~~--------~~~~~lVF~~~~~~~~~l~ 71 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG---------AASLDVIQEVEYVKEEAKMVYLLECLQK--------TPPPVLIFAEKKADVDAIH 71 (191)
T ss_dssp ----------------------------CCSEEEEEECCGGGHHHHHHHHHTT--------SCSCEEEECSCHHHHHHHH
T ss_pred ccccCCCEEEEECCCC---------CCCcCceEEEEEcChHHHHHHHHHHHHh--------CCCCEEEEECCHHHHHHHH
Confidence 3567788777665443 2357899999999999999999999832 3468999999999999999
Q ss_pred HHHhhh
Q psy15524 327 ELLSTK 332 (930)
Q Consensus 327 ~~L~~~ 332 (930)
..|+..
T Consensus 72 ~~L~~~ 77 (191)
T 2p6n_A 72 EYLLLK 77 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999764
No 194
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.36 E-value=0.015 Score=60.84 Aligned_cols=124 Identities=9% Similarity=0.068 Sum_probs=84.6
Q ss_pred chhhHHHHHHHHHhhccCCCcCCCceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcE
Q psy15524 634 PKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713 (930)
Q Consensus 634 ~~~~~~~l~~~l~~~~~~~~~~~~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~v 713 (930)
...|+..|..++..... .+.+++||+......+.+..++.. +++.+..+.|.....++. . .++...+
T Consensus 107 ~SGKf~~L~~LL~~l~~-----~~~kVLIfsq~t~~LDilE~~l~~---~~~~y~RlDG~~~~~~~k-~----~~~~~~i 173 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQE-----YETETAIVCRPGRTMDLLEALLLG---NKVHIKRYDGHSIKSAAA-A----NDFSCTV 173 (328)
T ss_dssp TCHHHHHHHHHHHHHTT-----SCEEEEEEECSTHHHHHHHHHHTT---SSCEEEESSSCCC------------CCSEEE
T ss_pred cCccHHHHHHHHHHHHh-----CCCEEEEEECChhHHHHHHHHHhc---CCCceEeCCCCchhhhhh-c----ccCCceE
Confidence 56788888877766533 278999999999999999888875 489999999986543221 1 2344455
Q ss_pred EEeccccccccC-----CCCccEEEEecCCCChhhH-HhhhcccccCC----CCceEEEEeCcccHH
Q psy15524 714 LICTDVAARGLD-----LPLVDWIVQYTAPSSSTDY-VHRVGRTARVG----HEGSSLLFLIPSEVK 770 (930)
Q Consensus 714 Lv~T~~~~~GlD-----ip~v~~VI~~~~p~s~~~y-~qr~GRagR~g----~~g~~~~~~~~~e~~ 770 (930)
.+.|...+-|+| +...+.||-||..+++..- +|.+-|+.|.| +.-..+-+++....+
T Consensus 174 ~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 174 HLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp EEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred EEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 455666666676 6789999999999998875 89888888863 344566666655443
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.89 E-value=0.06 Score=51.88 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.6
Q ss_pred cHHHHHHHHHhh---------cCCcEEEEcCCCChHHHHHH
Q psy15524 7 TTVQQLSIQPIL---------DGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 7 ~~~Q~~ai~~~~---------~g~~~lv~apTGsGKT~~~~ 38 (930)
.+.|++++..+. .|+.+++.+|+|+|||....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 567888887654 46789999999999998644
No 196
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.84 E-value=0.019 Score=53.54 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=25.4
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
.+.+++|+||++.+.+.. ...+..+++.+... ...++++|...
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~--g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNS--GKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHH--TCCEEEEEESS
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHc--CCcEEEEECCC
Confidence 356899999999865443 55555666555432 23324445553
No 197
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.58 E-value=0.076 Score=51.11 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHH
Q psy15524 428 DGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~ 445 (930)
.|+.+++.+|+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367899999999999975
No 198
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.47 E-value=0.023 Score=67.48 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=54.7
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... .+..++|++++|+..+.++.+.+.+...
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3689999999973 3567999999999999985544444443211 1235799999999999999999988754
No 199
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.46 E-value=0.025 Score=67.11 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=55.7
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~ 81 (930)
..|++.|++|+.. .+..++|.|+.|||||.+.+.-+...+.... .+..++|++++|+..+.++.+++.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4699999999973 3557999999999999986666655554311 123459999999999999999998875
No 200
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.44 E-value=0.011 Score=56.77 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=44.3
Q ss_pred CCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 274 PDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 274 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
+.++.|+|..++...|...|..++. .....++||||+++..++.++..|...
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~-------~~~~~~~lVF~~~~~~~~~l~~~L~~~ 54 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLD-------VLEFNQVVIFVKSVQRCIALAQLLVEQ 54 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHH-------HSCCSSEEEECSSHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHH-------hCCCCcEEEEECCHHHHHHHHHHHHhc
Confidence 4679999999999999999999994 335679999999999999999999765
No 201
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.43 E-value=0.01 Score=56.34 Aligned_cols=53 Identities=11% Similarity=0.242 Sum_probs=46.0
Q ss_pred cCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 273 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 273 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.++.|.+..++...|...|..++.. ..+.++||||++++.++.++..|...
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~-------~~~~~~lVF~~~~~~~~~l~~~L~~~ 58 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMT-------ENPDSCIIFCRTKEHVNQLTDELDDL 58 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHH-------HCCSSEEEECSSHHHHHHHHHHHHHT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHh-------cCCCcEEEEECCHHHHHHHHHHHHHc
Confidence 356799999999999999999999943 35679999999999999999999764
No 202
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.34 E-value=0.016 Score=55.85 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=45.0
Q ss_pred cCCCceeEEEEcCcch-hHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 273 IPDSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 273 ~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.++.|+|+.++... |...|..++ ......++||||+++..++.++..|...
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll-------~~~~~~~~lVF~~~~~~~~~l~~~L~~~ 57 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIY-------GSITIGQAIIFCQTRRNAKWLTVEMIQD 57 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHH-------TTSCCSEEEEECSCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHH-------HhCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 3578999999998765 999999988 3345679999999999999999999864
No 203
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.11 Score=54.85 Aligned_cols=43 Identities=9% Similarity=0.267 Sum_probs=27.0
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEccccC
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~ 587 (930)
..-++++||+|.+. + ...+..+++.........-+++.++|+.
T Consensus 132 ~~~ii~lDE~d~l~--~-q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLL--S-EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSC--C-THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhh--c-chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 45689999999997 2 3445555554332223455677788863
No 204
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.096 Score=55.27 Aligned_cols=45 Identities=9% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
...-.|++||+|.+.+ ...+..++++.......+-+|+.++|+..
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCccc
Confidence 3456899999999982 33445555544334445678888888754
No 205
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=94.98 E-value=0.027 Score=54.66 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=46.3
Q ss_pred ccCCCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 272 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 272 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
..+.++.|.+..++...|...|..++.. ...+.++||||+++..++.++..|...
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~------~~~~~k~lVF~~~~~~~~~l~~~L~~~ 69 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNA------TGKDSLTLVFVETKKGADSLEDFLYHE 69 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHH------C-CCSCEEEEESCHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHh------cCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 3467899999999999999999999953 225679999999999999999999764
No 206
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.96 E-value=0.019 Score=54.62 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=42.2
Q ss_pred CCceeEEEEcCcch-hHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 275 DSLKQHFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 275 ~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.++.|+|..++..+ |...|..++. ...+.++||||++++.++.++..|...
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~-------~~~~~~~lVF~~~~~~~~~l~~~L~~~ 53 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYD-------SISVTQAVIFCNTRRKVEELTTKLRND 53 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHH-------HTTCSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCcchhHHHHHHHHHH-------hCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 46889999888777 9999999984 335679999999999999999999764
No 207
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.72 E-value=0.057 Score=64.63 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=56.3
Q ss_pred ccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 4 ~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
..|++.|++|+... +..++|.|+.|||||.+...-+...+.... .+..++|+|+.|+..+.++.+++.++..
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 56999999999763 458999999999999987666665554311 1234599999999999999999988753
No 208
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.60 E-value=0.064 Score=58.94 Aligned_cols=83 Identities=20% Similarity=0.137 Sum_probs=50.5
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 511 (930)
.++.|+.|+|||... .+.+ . ....+|++||++++..+.+.+.+....
T Consensus 164 ~~I~G~aGsGKTt~I----~~~~-~---------~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEI----LSRV-N---------FEEDLILVPGRQAAEMIRRRANASGII------------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHH----HHHC-C---------TTTCEEEESCHHHHHHHHHHHTTTSCC-------------------
T ss_pred EEEEcCCCCCHHHHH----HHHh-c---------cCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------
Confidence 689999999999862 2221 1 123699999999998887776432100
Q ss_pred HHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhh
Q psy15524 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI 554 (930)
Q Consensus 512 ~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l 554 (930)
...+.-|.|-++++- +.........+++|+|||-.+
T Consensus 211 ----~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp ----CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGGS
T ss_pred ----ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcccC
Confidence 011122666555432 211122234889999999854
No 209
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.52 E-value=0.024 Score=54.94 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|+=.++.+|.|+|||...+ -++..+.. .|.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll-~~~~~~~~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL-SFVEIYKL--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH-HHHHHHHH--------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHHH--------CCCeEEEEeecc
Confidence 4457889999999998743 33333332 256789998883
No 210
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.40 E-value=0.074 Score=63.65 Aligned_cols=72 Identities=22% Similarity=0.196 Sum_probs=54.5
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... -+...+|+|+.|+..|.++.+.+.++..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999976 3567999999999999985544554444211 1235699999999999999988877653
No 211
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.27 E-value=0.048 Score=54.42 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=50.3
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~ 508 (930)
|.=.++.+++|+|||.+. +-++.++.. .|.+++++.|...- . . ...+.... |- .
T Consensus 12 G~i~litG~mGsGKTT~l-l~~~~r~~~--------~g~kVli~~~~~d~--r-~--~~~i~srl---------G~-~-- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL-IRRLHRLEY--------ADVKYLVFKPKIDT--R-S--IRNIQSRT---------GT-S-- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHH--------TTCCEEEEEECCCG--G-G--CSSCCCCC---------CC-S--
T ss_pred cEEEEEECCCCCcHHHHH-HHHHHHHHh--------cCCEEEEEEeccCc--h-H--HHHHHHhc---------CC-C--
Confidence 444788999999999874 333433332 36678999886421 0 0 00111111 10 0
Q ss_pred HHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhh
Q psy15524 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555 (930)
Q Consensus 509 ~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~ 555 (930)
-..+-+.+...+.+.+... ..-.+.++|||||++.+.
T Consensus 66 --------~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 --------LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp --------SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSC
T ss_pred --------ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccCc
Confidence 0123345556666665542 122457999999999653
No 212
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.24 E-value=0.069 Score=63.51 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=54.4
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+++-|.+++... +..++|.|+.|||||.+..--+...+.... .+..++|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999763 567999999999999985544554444311 1245699999999999999999887754
No 213
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.17 E-value=0.079 Score=62.96 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=55.5
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.|++-|++|+... +..++|.|+.|||||.+..--+...+.... .+..++|+|+.|+..+.++.+++.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4899999999853 568999999999999987666655554421 1234599999999999999999987743
No 214
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.91 E-value=0.065 Score=49.84 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=27.4
Q ss_pred CccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 133 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 133 ~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
+.+++||||.+.+.... ...+..++..+.... ..++.+|...++
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g--~~~iiits~~~p 126 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSG--KGFLLLGSEYTP 126 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHT--CCEEEEEESSCT
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcC--CcEEEEECCCCH
Confidence 46899999999865544 555666666665443 133555555443
No 215
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.90 E-value=0.08 Score=67.33 Aligned_cols=73 Identities=23% Similarity=0.194 Sum_probs=55.9
Q ss_pred CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhh
Q psy15524 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490 (930)
Q Consensus 413 ~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 490 (930)
..+|+-|.++|..- +++++|.|..|||||.+.+--++..+..... ..+..+++++++|+..|.++.+.+...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~---~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN---PIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS---CCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC---CCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 36899999999764 7899999999999999865555655543111 1134579999999999999998887754
No 216
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.88 E-value=0.25 Score=52.55 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=25.7
Q ss_pred ceEEEEecchhhhhcC-------cHHHHHHHHHHHhhcC-ccceEEEEcccc
Q psy15524 543 VEHLVLDEADRILDQG-------YERDIAEFLEILKKQK-PQFQSILLSATL 586 (930)
Q Consensus 543 l~~lVlDEah~l~~~g-------~~~~l~~i~~~l~~~~-~~~q~vl~SAT~ 586 (930)
-.+|+|||+|.+.... .......++..+.... ....++++.||-
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecC
Confidence 4689999999986422 2344555666665331 233455665654
No 217
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.78 E-value=0.28 Score=52.21 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
+..+++.+|+|+|||... -.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 357999999999999763 3334444
No 218
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.66 E-value=0.093 Score=66.72 Aligned_cols=108 Identities=17% Similarity=0.048 Sum_probs=71.8
Q ss_pred cCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.+|+-|.++|..- +.+++|.|+-|||||.+.+--++..+...... .+..++|++++|++.+.++.+++.......
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~---~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENP---IDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC---CCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC---CCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 5899999999764 77999999999999998777677666542211 123469999999999999999998865321
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHh
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~ 124 (930)
... ... .......+..-..+-|+|-..+...+.
T Consensus 85 ~~~------~~~-~~~~~~~~~~~~~~~i~T~hsf~~~~l 117 (1232)
T 3u4q_A 85 LVQ------RPG-SLHIRRQLSLLNRASISTLHSFCLQVL 117 (1232)
T ss_dssp HHH------STT-CHHHHHHHHHTTTSEEECHHHHHHHHH
T ss_pred hhc------Ccc-hHHHHHHHhccCCCeEEeHHHHHHHHH
Confidence 100 001 112222222224578899877654443
No 219
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.62 E-value=0.24 Score=48.04 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|+=.++.+|+|||||.+. +-++.++.. .|.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~~--------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAKI--------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHH--------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH--------CCCEEEEEEecc
Confidence 344788999999999874 344444432 367899999983
No 220
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.55 E-value=0.07 Score=53.20 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=51.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
.|.=.++.+|+|+|||...+-.+...... +.+++++.|...- . .. ..+.... |-.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---------g~kVli~~~~~d~--r-~~--~~i~srl---------G~~-- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---------DVKYLVFKPKIDT--R-SI--RNIQSRT---------GTS-- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEEECCCG--G-GC--SSCCCCC---------CCS--
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---------CCEEEEEEeccCc--h-HH--HHHHHhc---------CCC--
Confidence 34558889999999998755554443322 4458888876631 0 00 0001110 100
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEccccccc
Q psy15524 99 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 146 (930)
Q Consensus 99 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~ 146 (930)
...+-+.+.+.+...+... ..-...++|||||++.+.
T Consensus 66 ---------~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ---------LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ---------SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSC
T ss_pred ---------ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccCc
Confidence 0123355666676666531 223458999999999753
No 221
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.37 E-value=0.11 Score=60.24 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=70.7
Q ss_pred CCCHHHHHhHHhhhcC--CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 414 QVTTVQQLSIQPILDG--GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~--~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+|.-|.+++..++.- .-.++.|+-|.|||.+..+.+-. +. ..++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-----------~~~~vtAP~~~a~~~l~~~~~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-----------GRAIVTAPAKASTDVLAQFAGE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-----------SCEEEECSSCCSCHHHHHHHGG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-----------hCcEEECCCHHHHHHHHHHhhC---
Confidence 5688899999888763 33789999999999664444432 21 1269999998877654433211
Q ss_pred cCCCcceEEEeCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHh
Q psy15524 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571 (930)
Q Consensus 492 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~ 571 (930)
.|-+..|..+.. .....+++|||||=.+. -..+..++ .
T Consensus 240 ---------------------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaIp----~pll~~ll---~ 277 (671)
T 2zpa_A 240 ---------------------------KFRFIAPDALLA--------SDEQADWLVVDEAAAIP----APLLHQLV---S 277 (671)
T ss_dssp ---------------------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGSC----HHHHHHHH---T
T ss_pred ---------------------------CeEEeCchhhhh--------CcccCCEEEEEchhcCC----HHHHHHHH---h
Confidence 023445544321 12358999999999775 12233322 2
Q ss_pred hcCccceEEEEccccC
Q psy15524 572 KQKPQFQSILLSATLT 587 (930)
Q Consensus 572 ~~~~~~q~vl~SAT~~ 587 (930)
....++||.|+.
T Consensus 278 ----~~~~v~~~tTv~ 289 (671)
T 2zpa_A 278 ----RFPRTLLTTTVQ 289 (671)
T ss_dssp ----TSSEEEEEEEBS
T ss_pred ----hCCeEEEEecCC
Confidence 334578888875
No 222
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.37 E-value=0.58 Score=49.66 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=22.2
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...+++|||+|.+.... ....++..+.......++++.+
T Consensus 105 ~~~vliiDEi~~l~~~~---~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE---SQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHH---HHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCcHH---HHHHHHHHHHhCCCCcEEEEEe
Confidence 57899999999886221 2233334343333355666533
No 223
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.32 E-value=0.68 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=17.8
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
+.+++.+|+|+|||..+ -.+...+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999863 3344444
No 224
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.18 E-value=0.46 Score=50.77 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHhh----cCC---cEEEEcCCCChHHHHHHHHH
Q psy15524 6 VTTVQQLSIQPIL----DGG---DVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 6 l~~~Q~~ai~~~~----~g~---~~lv~apTGsGKT~~~~l~~ 41 (930)
++|+|.+++..+. +|+ .+++.||.|+|||.....-+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 5789998887654 343 38999999999998654433
No 225
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.16 E-value=0.55 Score=49.90 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
..++++||+|+|||...-
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999998643
No 226
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.13 E-value=1.1 Score=43.92 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEe
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSA 175 (930)
..-.+|||||+|.+... ....+...+.....+..+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~----~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD----AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH----HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999988542 23344444444445556666553
No 227
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.99 E-value=0.47 Score=49.30 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.++.+++.+|+|+|||...
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3567999999999999853
No 228
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.92 E-value=0.82 Score=45.78 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.+..+++.+|+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999853
No 229
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.82 E-value=0.19 Score=49.38 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=25.0
Q ss_pred EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH
Q psy15524 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre 477 (930)
.++.++.|||||.+.+--+. +... .|.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~-r~~~--------~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVR-RTQF--------AKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHH-HHHH--------TTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHH-HHHH--------CCCEEEEEEeccC
Confidence 56899999999987443333 3332 3778999999753
No 230
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.79 E-value=0.081 Score=58.13 Aligned_cols=83 Identities=20% Similarity=0.123 Sum_probs=51.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchHHHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 102 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 102 (930)
.++.|+.|+|||....-- + .. ...+|++||++++.++.+.+.+... .
T Consensus 164 ~~I~G~aGsGKTt~I~~~----~-~~---------~~~lVlTpT~~aa~~l~~kl~~~~~-------------~------ 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSR----V-NF---------EEDLILVPGRQAAEMIRRRANASGI-------------I------ 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHH----C-CT---------TTCEEEESCHHHHHHHHHHHTTTSC-------------C------
T ss_pred EEEEcCCCCCHHHHHHHH----h-cc---------CCeEEEeCCHHHHHHHHHHhhhcCc-------------c------
Confidence 789999999999864322 1 10 1269999999999988877633210 0
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccc
Q psy15524 103 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRI 145 (930)
Q Consensus 103 ~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~ 145 (930)
.....-+.|-+.++.. .........+.|||||+-.+
T Consensus 211 ----~~~~~~V~T~dsfL~~---~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLMN---YGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp ----CCCTTTEEEHHHHHHT---TTSSCCCCCSEEEEETGGGS
T ss_pred ----ccccceEEEeHHhhcC---CCCCCCCcCCEEEEeCcccC
Confidence 0112335677665432 12222235899999999854
No 231
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.69 E-value=0.25 Score=47.69 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 67 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~ 67 (930)
.|+=.++.+|.|+|||...+--+...... +.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~---------g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG---------KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT---------TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeecc
Confidence 35567899999999998755444333322 44688888885
No 232
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.60 E-value=0.41 Score=52.13 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q psy15524 429 GGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~ 445 (930)
+..+++.+|+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45799999999999986
No 233
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.52 E-value=0.65 Score=48.73 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.++.+++.+|+|+|||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 3567999999999999863
No 234
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.21 E-value=0.48 Score=45.87 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 67 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~ 67 (930)
|+=.++.+|.|+|||...+--+.+.... +.+++++-|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---------g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---------KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEecc
Confidence 4447889999999998755444443322 45699998884
No 235
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.17 E-value=0.48 Score=50.61 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=26.0
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SA 584 (930)
...+++||||||.+... ....+++.+...++...+++.|.
T Consensus 107 ~~~kvviIdead~l~~~----a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDA----AANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp SSCEEEEESCGGGBCHH----HHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCcEEEEECchhhcCHH----HHHHHHHHhcCCCCCeEEEEEeC
Confidence 46789999999988643 34566777765443444555443
No 236
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.12 E-value=1.3 Score=45.51 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=26.7
Q ss_pred cceEEEEecchhhhhc------CcHHHHHHHHHHHhhcC-ccceEEEEccccCH
Q psy15524 542 KVEHLVLDEADRILDQ------GYERDIAEFLEILKKQK-PQFQSILLSATLTP 588 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~------g~~~~l~~i~~~l~~~~-~~~q~vl~SAT~~~ 588 (930)
.-.+|+|||+|.+... .-...+..+...+.... ...+++++.+|-.+
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 177 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh
Confidence 3578999999998432 12333444444444321 24466666666554
No 237
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.09 E-value=0.26 Score=51.97 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=24.8
Q ss_pred eEEEEecchhhhhcC-----cHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 544 EHLVLDEADRILDQG-----YERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 544 ~~lVlDEah~l~~~g-----~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+|+|||+|.+.... -...+..++..+........+++.+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 589999999885321 3455566677776544444444433
No 238
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.06 E-value=0.15 Score=53.88 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=26.6
Q ss_pred cEEEEcccccccccC-----cHHHHHHHHHHHhhcCCCceEEEEEee
Q psy15524 135 EHLVLDEADRILDQG-----YERDIAEFLEILKKQKPQFQSILLSAT 176 (930)
Q Consensus 135 ~~vViDE~h~~~~~~-----~~~~~~~i~~~l~~~~~~~~~i~lSAT 176 (930)
++|+|||+|.+.... -...+..++..+.....++.+|+.+.+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 599999999986332 234445566666655556666665544
No 239
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=91.29 E-value=0.028 Score=53.74 Aligned_cols=50 Identities=12% Similarity=0.270 Sum_probs=42.0
Q ss_pred CceeEEEEcCc-chhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 276 SLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 276 ~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
++.|.+..++. ..|...|..++ ....+.++||||+++..++.++..|+..
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll-------~~~~~~~~iVF~~~~~~~~~l~~~L~~~ 53 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLL-------KQPEATRSIVFVRKRERVHELANWLREA 53 (170)
Confidence 57788888887 88999988888 3345679999999999999999999765
No 240
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.00 E-value=1.6 Score=42.89 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=23.6
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SA 584 (930)
..-.++||||+|.+... ....+...+........+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~----~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD----AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH----HHHHHHHHHHhcCCCCeEEEEeC
Confidence 44678999999987542 23444445544334555555443
No 241
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.00 E-value=0.48 Score=51.88 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
.+.+++.+|+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999863
No 242
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.86 E-value=0.6 Score=44.98 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccC
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 475 (930)
|+=.++.+|.|||||.- ++-.+.+... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~--------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQI--------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHH--------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHH--------cCCeEEEEccc
Confidence 44478899999999965 4444444332 25779999887
No 243
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.71 E-value=1 Score=50.11 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+..++++||+|+|||....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999998644
No 244
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.68 E-value=0.33 Score=56.22 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=72.1
Q ss_pred cCcHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhh
Q psy15524 5 QVTTVQQLSIQPILD--GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82 (930)
Q Consensus 5 ~l~~~Q~~ai~~~~~--g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 82 (930)
.+|.-|++++..++. ..-.++.|+-|.|||.+.-+.+.. +. ..++|.+|+.+=+..+++. ..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-----------~~~~vtAP~~~a~~~l~~~----~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-----------GRAIVTAPAKASTDVLAQF----AG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-----------SCEEEECSSCCSCHHHHHH----HG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-----------hCcEEECCCHHHHHHHHHH----hh
Confidence 578999999988775 234799999999999654444432 21 1269999998866544332 11
Q ss_pred hcCCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHh
Q psy15524 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 162 (930)
Q Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~ 162 (930)
. .|=+..|..+... ..+.++||||||=.+. -+.+..++.
T Consensus 239 ~--------------------------~i~~~~Pd~~~~~--------~~~~dlliVDEAAaIp----~pll~~ll~--- 277 (671)
T 2zpa_A 239 E--------------------------KFRFIAPDALLAS--------DEQADWLVVDEAAAIP----APLLHQLVS--- 277 (671)
T ss_dssp G--------------------------GCCBCCHHHHHHS--------CCCCSEEEEETGGGSC----HHHHHHHHT---
T ss_pred C--------------------------CeEEeCchhhhhC--------cccCCEEEEEchhcCC----HHHHHHHHh---
Confidence 0 0223357554321 3458999999998774 233333332
Q ss_pred hcCCCceEEEEEeecCC
Q psy15524 163 KQKPQFQSILLSATLTP 179 (930)
Q Consensus 163 ~~~~~~~~i~lSAT~~~ 179 (930)
....+.||.|...
T Consensus 278 ----~~~~v~~~tTv~G 290 (671)
T 2zpa_A 278 ----RFPRTLLTTTVQG 290 (671)
T ss_dssp ----TSSEEEEEEEBSS
T ss_pred ----hCCeEEEEecCCc
Confidence 1246888999865
No 245
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.64 E-value=0.38 Score=47.66 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|+=.++.++.|||||.+.+--+. +.. ..|.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~-r~~--------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVR-RFQ--------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-HHH--------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHH-HHH--------HCCCeEEEEeecC
Confidence 44467899999999987443333 332 3477899999875
No 246
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.38 E-value=1.2 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
...+++.||+|+|||..+ -.+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 356999999999999863 3333444
No 247
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.21 E-value=0.12 Score=51.22 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=42.7
Q ss_pred CCceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 275 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 275 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
..+.+.++.++...|...|..++. ...++++||||+++..++.++..|...
T Consensus 4 i~~~~~~~~~~~~~k~~~l~~ll~-------~~~~~~~lVF~~~~~~~~~l~~~L~~~ 54 (212)
T 3eaq_A 4 VTYEEEAVPAPVRGRLEVLSDLLY-------VASPDRAMVFTRTKAETEEIAQGLLRL 54 (212)
T ss_dssp CCBCCEEEECCTTSHHHHHHHHHH-------HHCCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred cceeeeEEeCCHHHHHHHHHHHHH-------hCCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 346677777888999999999994 345679999999999999999999865
No 248
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.11 E-value=1.6 Score=48.82 Aligned_cols=144 Identities=15% Similarity=0.079 Sum_probs=71.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
.|.-+++.|++|+|||...+--+...... .|..++|++.... ..|+..++........... ...|.-..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~--l~~g~l~~ 270 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSLEMS-AQQLVMRMLCAEGNINAQN--LRTGKLTP 270 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEESSSC-HHHHHHHHHHHHHTCCHHH--HHTSCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECCCC-HHHHHHHHHHHHcCCCHHH--HhcCCCCH
Confidence 45569999999999997544444333321 1334788774432 2344444322111111000 01121121
Q ss_pred HHHH------HHhcCCCcEEEE-----ChHHHHHHHhcCCCccCCCccEEEEccccccccc-----CcHHHHHHHHHHHh
Q psy15524 99 KSEK------ARIRKGISILVA-----TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-----GYERDIAEFLEILK 162 (930)
Q Consensus 99 ~~~~------~~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-----~~~~~~~~i~~~l~ 162 (930)
..+. ..+. ..++.+- |++.+...+.. ...-.++++||||+.+.+... +....+..+.+.|+
T Consensus 271 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~--l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk 347 (454)
T 2r6a_A 271 EDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRR--LKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK 347 (454)
T ss_dssp HHHHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHH--HHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 2111 1122 2345553 44455443332 111246899999999998743 24455666666665
Q ss_pred hc--CCCceEEEEEee
Q psy15524 163 KQ--KPQFQSILLSAT 176 (930)
Q Consensus 163 ~~--~~~~~~i~lSAT 176 (930)
.. ..++.++++|-.
T Consensus 348 ~lAke~~i~vi~~sql 363 (454)
T 2r6a_A 348 ALARELEVPVIALSQL 363 (454)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHHhCCeEEEEecC
Confidence 32 235667777653
No 249
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.11 E-value=0.26 Score=48.22 Aligned_cols=39 Identities=18% Similarity=0.064 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptr 476 (930)
|.=.++.++.|||||.. ++-.+.+... .+.+++++.|..
T Consensus 28 G~I~vitG~M~sGKTT~-Llr~~~r~~~--------~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE-LIRRLRRGIY--------AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHH--------TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHH-HHHHHHHHHH--------cCCceEEEEecc
Confidence 33468899999999975 4444444433 356789999974
No 250
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.10 E-value=6.2 Score=38.98 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=23.1
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.-.+|||||+|.+.. .....++..+........+++.|
T Consensus 126 ~~~vlviDe~~~l~~----~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSCH----HHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECcccccH----HHHHHHHHHHhcCCCceEEEEEe
Confidence 456899999998743 34455566665443344444444
No 251
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.07 E-value=0.12 Score=54.12 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=42.9
Q ss_pred CceeEEEEcCcchhHHHHHHHHhhhccccccCCcceEEEEEecccchhhhHHHHhhh
Q psy15524 276 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTK 332 (930)
Q Consensus 276 ~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 332 (930)
.+.+.++.++...|...|..++.. ..+.++||||++++.++.++..|...
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~-------~~~~~~LVF~~t~~~~~~l~~~L~~~ 51 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYV-------ASPDRAMVFTRTKAETEEIAQGLLRL 51 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHH-------HCCSSEEEECSSHHHHHHHHHHHHTT
T ss_pred ceEEEEEECCHHHHHHHHHHHHHh-------cCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 367888889999999999999943 34789999999999999999999764
No 252
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.06 E-value=0.79 Score=49.84 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+.+++++||+|+|||...-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 253
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.86 E-value=2 Score=46.59 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCC--CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMN--ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~--~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+|+++.|+ ...++.|.+..- +..|--++...++ -.+.+++.+|+|+|||+.
T Consensus 144 ~v~~~dIgGl-~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 144 DSTYDMVGGL-TKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCCGGGSCSC-HHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHH
T ss_pred CCCHHHhCCH-HHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHH
Confidence 4679999666 445555544211 1112112221111 237799999999999986
No 254
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.78 E-value=0.49 Score=45.72 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=72.3
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHH-HHHHHHHHHHHhhccCCCcceE--EEeCCCc
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE-LALQTLEIFTKLCKSFTWIVPS--WLTGGEK 506 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Ptre-La~Q~~~~~~~~~~~~~~~~~~--~~~gg~~ 506 (930)
..+++..++|.|||.+++--++..+.. |.+|+|+.=.+. .-.-=.+.+..+. ..+...+ +......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQN 97 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCC
Confidence 469999999999999987777777643 778888842221 0000001122221 1100000 0000000
Q ss_pred hHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 507 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 507 ~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
...+.... ...++.... .+.-..+++||+||+=..+..|+-. ...+++.+...+...-+|+.+--.
T Consensus 98 ~~~~~~~a-----------~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~-~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 98 READTAAC-----------MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLP-LEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHH-----------HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSC-HHHHHHHHHTSCTTCEEEEECSSC
T ss_pred cHHHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCC-HHHHHHHHHhCcCCCEEEEECCCC
Confidence 01111110 111111111 1122568999999998766666432 234566666655566667777777
Q ss_pred CHHHHHHHh
Q psy15524 587 TPAVQRLAG 595 (930)
Q Consensus 587 ~~~~~~l~~ 595 (930)
|+++.+++.
T Consensus 164 p~~l~e~AD 172 (196)
T 1g5t_A 164 HRDILDLAD 172 (196)
T ss_dssp CHHHHHHCS
T ss_pred cHHHHHhCc
Confidence 777776654
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.56 E-value=0.58 Score=45.18 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=29.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcc
Q psy15524 21 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P 65 (930)
..+++..++|.|||.+++--++..+.. |.+++|+.-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQF 64 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQF 64 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEES
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEEe
Confidence 379999999999999988888887755 566888853
No 256
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.51 E-value=1.3 Score=48.84 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=32.6
Q ss_pred ccceEEEEecchhhh---hcCcHHHHHHHHHHHhhcCccceEEEEccccCHHHHHHHh
Q psy15524 541 SKVEHLVLDEADRIL---DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595 (930)
Q Consensus 541 ~~l~~lVlDEah~l~---~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~~~~~l~~ 595 (930)
...+++|+|++-++. +..+...+..+...+. +..-++.++|+........+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~---pd~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK---PDDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC---CSEEEEEEEGGGGGGGHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC---CcceEEEEeCccchHHHHHHH
Confidence 468899999998753 3334455555555553 455667788887654444443
No 257
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.45 E-value=1.1 Score=49.20 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCHHHHHHHHhcC--CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGM--NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~--~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+|+++.|+ +..++.|.+.. .+..|--++...++ -.+.+++.+|+|+|||+.
T Consensus 177 ~~t~~digGl-~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 177 TETYSDVGGL-DKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCCGGGSCSC-HHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCChHhcCcH-HHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 4579999444 55566655321 11222222222221 146799999999999986
No 258
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.36 E-value=0.65 Score=46.54 Aligned_cols=19 Identities=16% Similarity=0.129 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+..++++||+|+|||....
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999998643
No 259
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.35 E-value=2.2 Score=44.97 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=23.9
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
.+-.++|+||+|.+... ....++..+........+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~----~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD----AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH----HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999988542 3344555555444455555543
No 260
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.23 E-value=1.2 Score=45.27 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
.+.+++.+|+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999853
No 261
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.97 E-value=0.5 Score=49.09 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~ 38 (930)
.+.++++++|+|+|||...-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 35679999999999998643
No 262
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.96 E-value=1.4 Score=47.07 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=23.1
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...++++||+|.+... ....++..+........+++.+
T Consensus 133 ~~~vliiDE~~~l~~~----~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD----AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHH----HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHH----HHHHHHHHHHhcCCCceEEEEe
Confidence 4579999999988642 2344455555443455555544
No 263
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.73 E-value=1.6 Score=47.19 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
+..+++.+|+|+|||... -.+...+
T Consensus 45 ~~~vli~G~~G~GKTtl~-~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV-KFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 456999999999999863 2344433
No 264
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.73 E-value=2.5 Score=44.89 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
..+++.+|+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999863
No 265
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.68 E-value=1.5 Score=47.65 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.3
Q ss_pred cEEEEccCCCchhHHh
Q psy15524 431 DVLVRSQTGSGKTLAY 446 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~ 446 (930)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999863
No 266
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.50 E-value=1.1 Score=47.26 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=18.8
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQ 455 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~ 455 (930)
++.+++.+|+|+|||..+. .+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5789999999999998643 3444443
No 267
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.49 E-value=1.5 Score=47.10 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 387 FAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 387 ~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
+.+.+|+++ --++.+.+.+.+... . .-....+++.+|+|+|||..
T Consensus 8 yrP~~~~~~-vg~~~~~~~l~~~~~-~------------~~~~~~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 8 YRPKSLNAL-SHNEELTNFLKSLSD-Q------------PRDLPHLLLYGPNGTGKKTR 52 (354)
T ss_dssp TCCCSGGGC-CSCHHHHHHHHTTTT-C------------TTCCCCEEEECSTTSSHHHH
T ss_pred cCCCCHHHh-cCCHHHHHHHHHHHh-h------------CCCCCeEEEECCCCCCHHHH
Confidence 345667777 446666666653210 0 00123499999999999985
No 268
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.44 E-value=0.55 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
..+++.+|+|+|||... -.+.+.+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 45999999999999863 3344444
No 269
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.34 E-value=0.64 Score=45.57 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 23 ~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
.++.+|-|+|||...+--+.+.... +.+++++-|.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~---------g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA---------KQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEeccC
Confidence 5678888999998766555554433 456999999874
No 270
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.22 E-value=1.9 Score=44.20 Aligned_cols=19 Identities=37% Similarity=0.281 Sum_probs=15.9
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l 39 (930)
.++++++|+|+|||..+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4699999999999986543
No 271
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.20 E-value=1.8 Score=43.54 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=30.6
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 487 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 487 (930)
.|.-+++.+|+|+|||...+--+...+. .+..++++.-. +-..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 4566899999999999864433333332 24557777643 33455555554
No 272
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.96 E-value=0.72 Score=50.19 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+..+++++|+|+|||....
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3469999999999998643
No 273
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.89 E-value=0.81 Score=45.60 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l 39 (930)
.|.-+++.+|+|+|||.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456799999999999975433
No 274
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.86 E-value=1.1 Score=49.84 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
.+.+++.+|+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999863
No 275
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.83 E-value=2.1 Score=43.41 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+.+++++|+|+|||...-
T Consensus 40 ~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998643
No 276
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.76 E-value=3.4 Score=45.86 Aligned_cols=143 Identities=17% Similarity=0.110 Sum_probs=67.6
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 507 (930)
.|.=+++.|++|+|||... +-+...+.. ..|..+++++.- .-..|+...+........... ...| .-.
T Consensus 199 ~G~l~ii~G~pg~GKT~la-l~ia~~~a~-------~~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~--l~~g-~l~ 266 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFA-LTIAQNAAL-------KEGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNR--VRLG-QLT 266 (444)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHH-------TTCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTT--CCGG-GCC
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHH-------hCCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH--HhCC-CCC
Confidence 4555899999999999754 444333332 125567887653 223344444332221111100 0111 111
Q ss_pred HHHHHHH------hcCCcEEEEC-----chhHHHhhhccCCcccccceEEEEecchhhhhc--C-----cHHHHHHHHHH
Q psy15524 508 KSEKARI------RKGISILVAT-----PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ--G-----YERDIAEFLEI 569 (930)
Q Consensus 508 ~~~~~~~------~~~~~Ilv~T-----p~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~--g-----~~~~l~~i~~~ 569 (930)
..++.++ .....+.+-. ++.+...++.. ..-..+++||||..+.+... + ....+..+.+.
T Consensus 267 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l--~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~ 344 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRL--VSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRG 344 (444)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHH--HHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHH
Confidence 2222221 1234566542 33343333321 11135899999999988643 2 22344555555
Q ss_pred HhhcC--ccceEEEEcc
Q psy15524 570 LKKQK--PQFQSILLSA 584 (930)
Q Consensus 570 l~~~~--~~~q~vl~SA 584 (930)
|+... -++.++++|-
T Consensus 345 Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 345 LKALARELGIPIIALSQ 361 (444)
T ss_dssp HHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHhCCeEEEEec
Confidence 54321 1455566553
No 277
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.75 E-value=1.3 Score=42.75 Aligned_cols=38 Identities=13% Similarity=0.020 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEccc
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~ 66 (930)
|+=.++.+|.|+|||.-.+-.+-+...+ +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEccc
Confidence 4558899999999996544444444332 3458999887
No 278
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.64 E-value=3.4 Score=46.08 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=67.0
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCch
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~ 507 (930)
.|.=+++.|++|+|||...+--+...... .|..++|++.-.. ..|+...+.......... ....|.-.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--------~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~--~l~~g~l~- 269 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--------TNENVAIFSLEMS-AQQLVMRMLCAEGNINAQ--NLRTGKLT- 269 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--------SSCCEEEEESSSC-HHHHHHHHHHHHHTCCHH--HHHTSCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECCCC-HHHHHHHHHHHHcCCCHH--HHhcCCCC-
Confidence 45568999999999997544333333221 2456788774321 234444332111011100 00111111
Q ss_pred HHHHHHH------hcCCcEEEECc-----hhHHHhhhccCCcccccceEEEEecchhhhhcC-----cHHHHHHHHHHHh
Q psy15524 508 KSEKARI------RKGISILVATP-----GRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-----YERDIAEFLEILK 571 (930)
Q Consensus 508 ~~~~~~~------~~~~~Ilv~Tp-----~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g-----~~~~l~~i~~~l~ 571 (930)
..++.++ ....++.+..+ +.+...++.. ..-..+++||||+.+.+...+ ....+..+.+.|+
T Consensus 270 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l--~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk 347 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRL--KQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK 347 (454)
T ss_dssp HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHH--HTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 1222211 12345666433 3343333321 111358999999999887432 3345555555554
Q ss_pred hcC--ccceEEEEcc
Q psy15524 572 KQK--PQFQSILLSA 584 (930)
Q Consensus 572 ~~~--~~~q~vl~SA 584 (930)
... .++.++++|-
T Consensus 348 ~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 348 ALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHTCCEEEEEC
T ss_pred HHHHHhCCeEEEEec
Confidence 321 1445555543
No 279
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.60 E-value=1.3 Score=49.24 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 99 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 99 (930)
|.-+++.|++|+|||...+--+. .+... .+..+++++.... ..|+..++........... ...|.-...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~-~~a~~-------~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~--l~~g~l~~~ 268 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQ-NAALK-------EGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNR--VRLGQLTDR 268 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHH-HHHHT-------TCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTT--CCGGGCCHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH-HHHHh-------CCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHH--HhCCCCCHH
Confidence 44589999999999975444333 33321 1334787775422 3345555433222211111 111222222
Q ss_pred HHHH------HhcCCCcEEEE-----ChHHHHHHHhcCCCccCCCccEEEEccccccccc-------CcHHHHHHHHHHH
Q psy15524 100 SEKA------RIRKGISILVA-----TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-------GYERDIAEFLEIL 161 (930)
Q Consensus 100 ~~~~------~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~-------~~~~~~~~i~~~l 161 (930)
.+.. .+.. .++.+- |++.+...+.. ...-.++++||||..+.+... .....+..+...|
T Consensus 269 ~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~--l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~L 345 (444)
T 2q6t_A 269 DFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARR--LVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGL 345 (444)
T ss_dssp HHHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHH--HHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence 2111 1222 345553 44555443332 111136899999999998753 2234556666666
Q ss_pred hhc--CCCceEEEEEee
Q psy15524 162 KKQ--KPQFQSILLSAT 176 (930)
Q Consensus 162 ~~~--~~~~~~i~lSAT 176 (930)
+.. ..++.++++|-.
T Consensus 346 k~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 346 KALARELGIPIIALSQL 362 (444)
T ss_dssp HHHHHHHTSCEEEEEEC
T ss_pred HHHHHHhCCeEEEEecC
Confidence 542 235678877754
No 280
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.59 E-value=0.87 Score=45.38 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.|.-+++.+|+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4566889999999999753
No 281
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.42 E-value=1.9 Score=45.53 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+++|+++|+|+|||...-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 469999999999998643
No 282
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.23 E-value=0.49 Score=50.31 Aligned_cols=144 Identities=13% Similarity=0.018 Sum_probs=71.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCch
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 98 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 98 (930)
.|.=+++.|++|+|||...+--+. .+.. .+..++|++.... ..|+..++.......+... ...|.-..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~-~~a~--------~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~--l~~g~Ls~ 112 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVL-SALN--------DDRGVAVFSLEMS-AEQLALRALSDLTSINMHD--LESGRLDD 112 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHH-HHHH--------TTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHH--HHHTCCCH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHH--------cCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHH--HhcCCCCH
Confidence 344599999999999975444333 3332 1445788775432 3445555433322211000 01122222
Q ss_pred HHHHH------HhcCCCcEEE-EC----hHHHHHHHhcCCCccCC-CccEEEEcccccccccC----cHHHHHHHHHHHh
Q psy15524 99 KSEKA------RIRKGISILV-AT----PGRLLDHCKHTETLKFS-KVEHLVLDEADRILDQG----YERDIAEFLEILK 162 (930)
Q Consensus 99 ~~~~~------~l~~~~~Ilv-~T----p~~l~~~l~~~~~~~l~-~l~~vViDE~h~~~~~~----~~~~~~~i~~~l~ 162 (930)
.++.. .+. ..++.| -+ +..+...+.+. ..-. .+++||||-.+.|...+ ....+..+.+.|+
T Consensus 113 ~e~~~l~~a~~~l~-~~~l~I~d~~~~si~~i~~~ir~l--~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK 189 (338)
T 4a1f_A 113 DQWENLAKCFDHLS-QKKLFFYDKSYVRIEQIRLQLRKL--KSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELK 189 (338)
T ss_dssp HHHHHHHHHHHHHH-HSCEEEECCTTCCHHHHHHHHHHH--HHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCeEEeCCCCCcHHHHHHHHHHH--HHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHH
Confidence 21111 111 234444 33 34444433320 1112 69999999999886432 2234555665555
Q ss_pred hc--CCCceEEEEEeec
Q psy15524 163 KQ--KPQFQSILLSATL 177 (930)
Q Consensus 163 ~~--~~~~~~i~lSAT~ 177 (930)
.. ..++.++++|-.-
T Consensus 190 ~lAkel~vpVi~lsQl~ 206 (338)
T 4a1f_A 190 TLARELEIPIIALVQLN 206 (338)
T ss_dssp HHHHHHTSCEEEEEECC
T ss_pred HHHHHcCCeEEEEEecC
Confidence 32 2357788887653
No 283
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.19 E-value=1.1 Score=44.40 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
|+=.++.+|-|+|||...+--+.+.... +.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---------g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---------TCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCeEEEEeecCC
Confidence 4446778888999998765555544432 556899888764
No 284
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.19 E-value=5.1 Score=39.63 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=23.9
Q ss_pred CccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEe
Q psy15524 133 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175 (930)
Q Consensus 133 ~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSA 175 (930)
.-.+|||||+|.+.. .....++..+......+.+|+.|.
T Consensus 126 ~~~vlviDe~~~l~~----~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCH----HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccH----HHHHHHHHHHhcCCCceEEEEEeC
Confidence 457899999998743 234455555554444555555553
No 285
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.98 E-value=1.5 Score=41.69 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
...+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 456999999999999753
No 286
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.94 E-value=0.58 Score=49.40 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 388 ~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
.+.+|+++ .-++...+.+.+... . -....+++.||+|+|||..
T Consensus 12 ~p~~~~~~-~g~~~~~~~l~~~l~--~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 12 RPRTLDEV-VGQDEVIQRLKGYVE--R------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SCSSGGGS-CSCHHHHHHHHTTTT--T------------TCCCCEEEESSSSSSHHHH
T ss_pred CCCCHHHH-hCCHHHHHHHHHHHh--C------------CCCCeEEEECcCCcCHHHH
Confidence 34567777 345556666653211 0 0112499999999999975
No 287
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.77 E-value=3.3 Score=45.43 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=27.3
Q ss_pred ceEEEEecchhhhhcC----------cHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 543 VEHLVLDEADRILDQG----------YERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 543 l~~lVlDEah~l~~~g----------~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
-.++++||+|.+.... ....+..++..+........++++-||-
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 3579999999886321 1245666666666544444566666663
No 288
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.50 E-value=2.3 Score=42.69 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFT 78 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~ 78 (930)
.|.-+++.+|+|+|||...+--+...... +..++++.-.. -..++.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---------~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---------GEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEEccC-CHHHHHHHHH
Confidence 56679999999999998644433333321 33477776432 2345555544
No 289
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.46 E-value=7.6 Score=41.63 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=23.9
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
..-.++||||+|.+.. .....++..+...+....+++.|
T Consensus 118 ~~~~vliiDe~~~l~~----~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCH----HHHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcH----HHHHHHHHHHhcCCCceEEEEEe
Confidence 4567999999998853 33455566665543344444443
No 290
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.23 E-value=2.6 Score=45.56 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+..+++.||+|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 291
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.15 E-value=1.5 Score=46.20 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=23.4
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
+-.++||||+|.+... ....++..+....+...+++.|
T Consensus 107 ~~~viiiDe~~~l~~~----~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG----AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH----HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH----HHHHHHHHHhccCCCceEEEEe
Confidence 3679999999988642 2344455554434455555554
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.59 E-value=2.4 Score=44.63 Aligned_cols=144 Identities=13% Similarity=0.044 Sum_probs=71.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCC--ceeEE--eeC
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW--IVPSW--LTG 94 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~--~~~~~--~~g 94 (930)
.|.-+++.|++|+|||...+--+.+.... +..+++++-. .-..|+..++.......+. +.... +.+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~---------g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~ 136 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFAS 136 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT---------TCEEEEEESS-SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCH
Confidence 45569999999999997544433333221 2457887744 3345555555443222110 00000 111
Q ss_pred CCchHH---HHHHhcCCCcEEEE-----ChHHHHHHHhcCCCccCCCcc--EEEEccccccccc----CcHHHHHHHHHH
Q psy15524 95 GEKMKS---EKARIRKGISILVA-----TPGRLLDHCKHTETLKFSKVE--HLVLDEADRILDQ----GYERDIAEFLEI 160 (930)
Q Consensus 95 ~~~~~~---~~~~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~l~--~vViDE~h~~~~~----~~~~~~~~i~~~ 160 (930)
+. +.. ....+. ..++.+- |++.+...+.. ...-..++ +||||-...+... .....+..+...
T Consensus 137 ~~-~~~l~~a~~~l~-~~~i~i~d~~~~~~~~i~~~i~~--l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~ 212 (315)
T 3bh0_A 137 ED-WGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQ--TKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRD 212 (315)
T ss_dssp SC-HHHHHHHHHHHH-TSCEEEECCSCCBHHHHHHHHHH--HHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHH--HHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHH
Confidence 11 111 111222 2345543 44555444432 11123588 9999999988632 223455666666
Q ss_pred Hhhc--CCCceEEEEEee
Q psy15524 161 LKKQ--KPQFQSILLSAT 176 (930)
Q Consensus 161 l~~~--~~~~~~i~lSAT 176 (930)
|+.. ..++.++++|-.
T Consensus 213 Lk~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 213 LKKMARELDVVVIALSQL 230 (315)
T ss_dssp HHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHhCCeEEEEeec
Confidence 6532 234667766653
No 293
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.47 E-value=2.2 Score=46.27 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.9
Q ss_pred cEEEEcCCCChHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~ 38 (930)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998643
No 294
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.08 E-value=5.5 Score=41.74 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=24.1
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
.+-.++||||+|.+... ....+...+.....++.+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~----~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD----AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH----HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH----HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998542 2334445554444555666543
No 295
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.07 E-value=2.3 Score=41.82 Aligned_cols=21 Identities=29% Similarity=0.067 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCchhHHhhH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAI 448 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~l 448 (930)
.|.-+++.+|+|+|||.....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 455689999999999976443
No 296
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.04 E-value=5 Score=42.62 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=23.3
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...+++|+||+|.+... ....++..+........+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~----~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA----AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH----HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH----HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999988542 2334445554434455555443
No 297
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.88 E-value=1.9 Score=47.51 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCC--CCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNI--TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~--~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+|+++.|+ ..+++.|.+..-+ ..+--++..- +--.+.+++.+|.|+|||+.
T Consensus 205 ~vt~~DIgGl-~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 205 DVTYSDVGGC-KDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCCCSSCTTC-HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCHHHhccH-HHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 4689999555 4566666542211 1111111111 11246799999999999986
No 298
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=85.70 E-value=1.6 Score=41.26 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=45.3
Q ss_pred CCHHHHHhHHhhhcCCc--EEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHH
Q psy15524 415 VTTVQQLSIQPILDGGD--VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 483 (930)
Q Consensus 415 ~~~iQ~~~i~~il~~~d--~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~ 483 (930)
..+-|..++..++...+ .++.++-|++||-..+.-++.... ..|..+.+|+|+..-+....
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--------~~Gr~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--------EQGREVQIIAADRRSQMNMK 97 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--------HTTCCEEEECSTTHHHHHHS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--------hcCeEEEEEcCchHHHHHHH
Confidence 34668999999987655 778999999999886544444333 35889999999977665443
No 299
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=85.33 E-value=2.4 Score=44.77 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
...++++|||+|.+...... ..+...+.....+.++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~---~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQ---RHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHH---HHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHH---HHHHHHHHhCCCCcEEEEEe
Confidence 36789999999998622222 23333333333445666633
No 300
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=85.31 E-value=11 Score=41.42 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=29.1
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc--cCHHHHHHHHHHHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFT 487 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~--PtreLa~Q~~~~~~ 487 (930)
.-+++.+++|+|||.+..- +...+.. .|.+++++. |.|.-+.++...+.
T Consensus 101 ~vIlivG~~G~GKTTt~~k-LA~~l~~--------~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK-LARYFQK--------RGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH-HHHHHHH--------CCCeEEEEeCCCcchhHHHHHHHHH
Confidence 3478899999999987432 2233332 355666666 55655544444433
No 301
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=85.09 E-value=3.6 Score=44.75 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
++++|+++|+|+|||.+.-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998643
No 302
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.03 E-value=1.5 Score=47.09 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
+.+++.+|+|+|||..+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999863
No 303
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.00 E-value=1.4 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCchhHHhh
Q psy15524 427 LDGGDVLVRSQTGSGKTLAYA 447 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~~ 447 (930)
..|.=+++.||+|+|||....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 346668899999999997543
No 304
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=84.86 E-value=3.6 Score=45.00 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=18.7
Q ss_pred ceEEEEecchhhhhc--CcHHHHHHHHHHHhh
Q psy15524 543 VEHLVLDEADRILDQ--GYERDIAEFLEILKK 572 (930)
Q Consensus 543 l~~lVlDEah~l~~~--g~~~~l~~i~~~l~~ 572 (930)
--+|||||+|.+... +-...+..++..+..
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 458999999998653 123445555555543
No 305
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.60 E-value=4.1 Score=44.11 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=27.2
Q ss_pred cEEEEcccccccccC----------cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 135 EHLVLDEADRILDQG----------YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 135 ~~vViDE~h~~~~~~----------~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..|.|||+|.+.... ....+..++..+........++.+-||-.+
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrp 297 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRL 297 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCS
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCCh
Confidence 578899999986421 112344555555544445566667777654
No 306
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.42 E-value=4.3 Score=43.08 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
.++++.+|+|+|||...-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 479999999999998643
No 307
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.17 E-value=1.8 Score=47.20 Aligned_cols=53 Identities=23% Similarity=0.426 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCHHHHHHHHhcC--CCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGM--NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~--~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+|+++.|+. ..++.|.+.. .+..+--++...++ -.+.+++.+|.|+|||+.
T Consensus 178 ~v~~~DIgGld-~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 178 TESYSDIGGLE-SQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCGGGTCSCH-HHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCcceecCcHH-HHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 45799996664 4444454321 11222222222211 136799999999999986
No 308
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.15 E-value=1.4 Score=48.40 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCC--CCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHh
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMN--ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~--~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~ 446 (930)
..+|+++.|+. ..++.|.+..- +..|--++...+ --.+.+++.+|+|+|||+.+
T Consensus 177 ~v~~~digGl~-~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLT-EQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCH-HHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChH-HHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 45799995554 44555543111 111111111111 11367999999999999863
No 309
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=83.87 E-value=2 Score=46.21 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+.+|+++|+|+|||...-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999998644
No 310
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.47 E-value=1.2 Score=47.29 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=29.4
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
.|.=+++.|++|+|||...+ -+...+.. .+..++|++.- .-..|+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~--------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALN--------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH--------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH--------cCCeEEEEeCC-CCHHHHHHHH
Confidence 44558999999999997543 33333322 25668887743 2234444444
No 311
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.17 E-value=4.1 Score=42.83 Aligned_cols=52 Identities=10% Similarity=-0.072 Sum_probs=30.7
Q ss_pred hcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 427 LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
..|.=+++.|++|+|||...+--+..... .+..+++++-- +-..|+...+..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSD---------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 34555899999999999754333333322 24567887743 334444444443
No 312
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.17 E-value=3.9 Score=43.90 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
|.-+++.+|+|+|||...+- ++..+.. .+..++|+.....
T Consensus 74 G~li~I~G~pGsGKTtlal~-la~~~~~--------~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALA-IVAQAQK--------AGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCCEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHH-HHHHHHH--------CCCeEEEEECCCC
Confidence 45689999999999975443 4333332 1335788875543
No 313
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.12 E-value=7 Score=41.51 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.1
Q ss_pred hhcC--CcEEEEcCCCChHHHHHH
Q psy15524 17 ILDG--GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 17 ~~~g--~~~lv~apTGsGKT~~~~ 38 (930)
+..| .++++.||+|+|||...-
T Consensus 53 l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 53 LKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp TTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HhcCCCCEEEEECCCCCCHHHHHH
Confidence 3445 469999999999998643
No 314
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.96 E-value=2.7 Score=42.30 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=28.9
Q ss_pred ccceEEEEecchhhhh-----cCcHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 541 SKVEHLVLDEADRILD-----QGYERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~-----~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+.+++|+||.-..++ ......+..++..+.+. + .+++++.....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~--g-~tii~vtH~~~ 183 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM--G-VTTILTTEAPD 183 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH--C-CEEEEEECCC-
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC--C-CeEEEEECCCC
Confidence 4678999999998886 44555577777776542 3 34555554443
No 315
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.94 E-value=1.9 Score=48.49 Aligned_cols=45 Identities=24% Similarity=0.390 Sum_probs=28.4
Q ss_pred eEEEEecchhhhhcC-------cHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 544 EHLVLDEADRILDQG-------YERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 544 ~~lVlDEah~l~~~g-------~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
.+|+|||+|.+.... -......++..+........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 589999999987532 113445566666554445566777777543
No 316
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.80 E-value=1.3 Score=57.65 Aligned_cols=43 Identities=23% Similarity=0.165 Sum_probs=31.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 71 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 71 (930)
|+++++++|+|+|||..+...+.+... .|.+++|+...-.+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTTSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEcccccCH
Confidence 679999999999999986655544332 2556888886654433
No 317
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=82.42 E-value=2.5 Score=47.48 Aligned_cols=45 Identities=24% Similarity=0.390 Sum_probs=27.6
Q ss_pred cEEEEcccccccccC-------cHHHHHHHHHHHhhcCCCceEEEEEeecCC
Q psy15524 135 EHLVLDEADRILDQG-------YERDIAEFLEILKKQKPQFQSILLSATLTP 179 (930)
Q Consensus 135 ~~vViDE~h~~~~~~-------~~~~~~~i~~~l~~~~~~~~~i~lSAT~~~ 179 (930)
..|+|||+|.+.... -......++..+........++.+.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 589999999987532 112334455555544445567777777544
No 318
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.59 E-value=0.98 Score=41.37 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=18.3
Q ss_pred hhcCCcEEEEcCCCChHHHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~ 38 (930)
...+.++++.+|+|+|||.++-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3467789999999999998653
No 319
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=81.54 E-value=6 Score=41.53 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
..+++++|+|+|||...-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 320
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.44 E-value=6.7 Score=38.31 Aligned_cols=23 Identities=26% Similarity=-0.002 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~ 41 (930)
.|.-+++.+|+|+|||.....-+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45669999999999998654433
No 321
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.23 E-value=8.5 Score=42.18 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=26.4
Q ss_pred CCccEEEEccccccc---ccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 132 SKVEHLVLDEADRIL---DQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 132 ~~l~~vViDE~h~~~---~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.+.+++|||++-+.. +..+...+..+...+ .++.-++.++|+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~---~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL---KPDDVILVIDASI 223 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH---CCSEEEEEEEGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh---CCcceEEEEeCcc
Confidence 468999999997653 333444444444443 4555667777765
No 322
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.63 E-value=0.91 Score=41.51 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.6
Q ss_pred HhhcCCcEEEEcCCCChHHHH
Q psy15524 16 PILDGGDVLVRSQTGSGKTLA 36 (930)
Q Consensus 16 ~~~~g~~~lv~apTGsGKT~~ 36 (930)
.+..+.++++.+|+|+|||.+
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 344677899999999999975
No 323
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=80.63 E-value=7.4 Score=39.90 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=18.4
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHH
Q psy15524 18 LDGGDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 18 ~~g~~~lv~apTGsGKT~~~~l~~ 41 (930)
..|.-+++.+|+|+|||.....-+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 356679999999999998654433
No 324
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.31 E-value=2.7 Score=54.84 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=29.8
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
++.+++.+|+|+|||..+...+.+... .|.+++++..-..+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEccccc
Confidence 578999999999999976555554432 36678888876443
No 325
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=80.31 E-value=6.5 Score=41.03 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=26.1
Q ss_pred ccceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEc
Q psy15524 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583 (930)
Q Consensus 541 ~~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~S 583 (930)
...+++||||||++... ....+++.+...++...+++.+
T Consensus 81 ~~~kvviIdead~lt~~----a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ----AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHH----HHHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHH----HHHHHHHHHhCCCCCeEEEEEE
Confidence 46789999999988643 3456777776644455555544
No 326
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.05 E-value=3.3 Score=43.48 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=23.6
Q ss_pred CccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 133 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 133 ~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
.-.+|||||+|.+.... ...+...+....++..+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~----~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA----QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH----HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH----HHHHHHHHhccCCCceEEEEe
Confidence 36799999999986432 333444444444555666654
No 327
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.01 E-value=2.7 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=18.0
Q ss_pred hhcCCcEEEEcCCCChHHHHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~l 39 (930)
+..|.-+++.||+|+|||.....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 34567799999999999985443
No 328
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=79.82 E-value=2.3 Score=47.20 Aligned_cols=142 Identities=13% Similarity=0.024 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeC-----
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG----- 94 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g----- 94 (930)
|.-+++.|++|+|||...+--+.+.... +..++|++-.. -..|+..++............ ..|
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~---------g~~vl~fSlEm-s~~ql~~R~~~~~~~i~~~~l--~~g~~~l~ 264 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLEM-GKKENIKRLIVTAGSINAQKI--KAARRDFA 264 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT---------TCEEEEECSSS-CTTHHHHHHHHHHSCCCHHHH--HHTGGGTC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc---------CCEEEEEECCC-CHHHHHHHHHHHHcCCCHHHH--hcccCCCC
Confidence 4459999999999997644444433321 34588887442 233444444332211110000 011
Q ss_pred CCchHH---HHHHhcCCCcEEEE-----ChHHHHHHHhcCCCccCCCcc--EEEEccccccccc----CcHHHHHHHHHH
Q psy15524 95 GEKMKS---EKARIRKGISILVA-----TPGRLLDHCKHTETLKFSKVE--HLVLDEADRILDQ----GYERDIAEFLEI 160 (930)
Q Consensus 95 ~~~~~~---~~~~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~~l~~l~--~vViDE~h~~~~~----~~~~~~~~i~~~ 160 (930)
...+.. ....+. ..++.|- |++.+...+... ..-.+++ +||||-...|... +....+..+...
T Consensus 265 ~~~~~~l~~a~~~l~-~~~l~i~d~~~~s~~~i~~~ir~l--~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~ 341 (444)
T 3bgw_A 265 SEDWGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQT--KRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRD 341 (444)
T ss_dssp CSCHHHHHHHHHHHH-TSCEEEECCSSCBHHHHHHHHHHH--HHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHH
Confidence 111111 111222 2345542 455555444321 1113688 9999999988643 233456666666
Q ss_pred Hhhc--CCCceEEEEEee
Q psy15524 161 LKKQ--KPQFQSILLSAT 176 (930)
Q Consensus 161 l~~~--~~~~~~i~lSAT 176 (930)
|+.. ..++.++++|-.
T Consensus 342 Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 342 LKKMARELDVVVIALSQL 359 (444)
T ss_dssp HHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHhCCeEEEEecC
Confidence 6532 235677877764
No 329
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.66 E-value=14 Score=38.28 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCchhHHhh
Q psy15524 428 DGGDVLVRSQTGSGKTLAYA 447 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~ 447 (930)
.++-+.+.+++|+|||.+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568889999999998643
No 330
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.20 E-value=4.5 Score=42.27 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~ 38 (930)
+++++||+|+|||....
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999998643
No 331
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=79.10 E-value=6.4 Score=42.91 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.6
Q ss_pred CcEEE--EcCCCChHHHHHH
Q psy15524 21 GDVLV--RSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv--~apTGsGKT~~~~ 38 (930)
..+++ +||.|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 35888 8999999998644
No 332
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=79.04 E-value=1.3 Score=43.22 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
|.=.++.+|-|+|||...+--+ .+... .+.+++++-|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~~--------~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGIY--------AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHHH--------TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHHH--------cCCceEEEEeccC
Confidence 3447888999999997654444 33332 1345899998775
No 333
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.98 E-value=1 Score=41.18 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=16.8
Q ss_pred hhcCCcEEEEccCCCchhHH
Q psy15524 426 ILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 426 il~~~d~lv~a~TGsGKTl~ 445 (930)
...+.++++.+|+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34567899999999999975
No 334
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=78.78 E-value=1.2 Score=40.88 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.9
Q ss_pred hcCCcEEEEccCCCchhHHh
Q psy15524 427 LDGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~ 446 (930)
..+.++++.+|+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45678999999999999864
No 335
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.52 E-value=4.8 Score=40.10 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCchhHHhhHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPI 450 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~ 450 (930)
.|.-+.+.+|+|+|||.....-+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45668999999999998644333
No 336
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=78.36 E-value=3.9 Score=41.05 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCccEEEEcccccccc-----cCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILD-----QGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~-----~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
.+.+++|+||.-.+++ ......+..++..++... ..+++.|
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g--~tii~vt 179 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMG--VTTILTT 179 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHC--CEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCC--CeEEEEE
Confidence 4678999999998876 445555777777776543 3344444
No 337
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=78.35 E-value=14 Score=38.49 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=26.2
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
..-+.+||||+|.|.... ...++..+..-+++..+|+.+
T Consensus 81 ~~~kvviIdead~lt~~a----~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA----ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH----HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH----HHHHHHHHhCCCCCeEEEEEE
Confidence 467899999999986433 345666665555555666555
No 338
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.20 E-value=3.8 Score=45.43 Aligned_cols=38 Identities=13% Similarity=-0.044 Sum_probs=25.4
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEcc
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 474 (930)
.|.=+++.|++|+|||...+--+...... |..++|++-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---------g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---------TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---------CCEEEEEEC
Confidence 45558999999999997644334433321 566888874
No 339
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.11 E-value=11 Score=40.03 Aligned_cols=42 Identities=12% Similarity=0.350 Sum_probs=24.4
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEEeec
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lSAT~ 177 (930)
.+-+++|+||+|.+ +.... ..++..+....++..+|+.|..+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~---~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQ---AALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHH---HHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHH---HHHHHHHHhhcCCCEEEEEeCCH
Confidence 46789999999994 43333 33444444444455666655443
No 340
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=78.05 E-value=12 Score=38.22 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=19.1
Q ss_pred hhcCCcEEEEccCCCchhHHhhHHH
Q psy15524 426 ILDGGDVLVRSQTGSGKTLAYAIPI 450 (930)
Q Consensus 426 il~~~d~lv~a~TGsGKTl~~~lp~ 450 (930)
+..|.-+++.+|+|+|||.....-+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4466779999999999998644433
No 341
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.81 E-value=13 Score=39.39 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=23.3
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
...+++||||+|.+.... ...+...+........+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~----~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA----QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH----HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH----HHHHHHHHhcCCCCeEEEEEe
Confidence 357899999999886432 233444444444455565543
No 342
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=77.45 E-value=1.9 Score=49.27 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhHH
Q psy15524 428 DGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~ 445 (930)
.|..+++.+|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467799999999999985
No 343
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=77.36 E-value=23 Score=37.72 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=23.8
Q ss_pred CCccEEEEcccccccccCcHHHHHHHHHHHhhcCCCceEEEEE
Q psy15524 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174 (930)
Q Consensus 132 ~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~~~~~~~i~lS 174 (930)
..-.+|||||+|.+... ....++..+...+.++.+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~----~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH----SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH----HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH----HHHHHHHHHhcCCCceEEEEEe
Confidence 45679999999988542 3344555555444444455544
No 344
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=77.23 E-value=2 Score=48.00 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=27.0
Q ss_pred ceEEEEecchhhhhcC----------cHHHHHHHHHHHhhcCccceEEEEccccCH
Q psy15524 543 VEHLVLDEADRILDQG----------YERDIAEFLEILKKQKPQFQSILLSATLTP 588 (930)
Q Consensus 543 l~~lVlDEah~l~~~g----------~~~~l~~i~~~l~~~~~~~q~vl~SAT~~~ 588 (930)
-.+|+|||+|.+.... ....+..++..+........++++.||-.+
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 4689999999885421 123456666666533333455666666443
No 345
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.17 E-value=4.7 Score=40.40 Aligned_cols=52 Identities=29% Similarity=0.255 Sum_probs=30.9
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~ 488 (930)
.|.-+++.|++|+|||...+--+.+.+.. .+..+++++-. +-..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeeccc-CCHHHHHHHHHH
Confidence 35568999999999997544334443332 24457777643 334555555544
No 346
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.76 E-value=4.9 Score=51.76 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCceeEEeeCCCchH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 99 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 99 (930)
|+-+.+.+|.|||||...+..+.+... .|..++++.+..+|.... +++++-+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~---------~g~~~~~i~~e~~~~~~~---~~~~Gv~~~-------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHALDPIY---ARKLGVDID-------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEECTTSCCCHHH---HHHTTCCGG--------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCeEEEEecCCCCCHHH---HHHcCCCHH--------------
Confidence 356999999999999875554443322 366799999998887765 444443222
Q ss_pred HHHHHhcCCCcEEEECh---HHHHHHHhcCCCccCCCccEEEEcccccccc
Q psy15524 100 SEKARIRKGISILVATP---GRLLDHCKHTETLKFSKVEHLVLDEADRILD 147 (930)
Q Consensus 100 ~~~~~l~~~~~Ilv~Tp---~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~ 147 (930)
++++.-| |..+..+.. .+.-..++.||||.+..+..
T Consensus 1485 ----------~l~~~~p~~~e~~l~~~~~--~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ----------NLLCSQPDTGEQALEICDA--LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----------GCEEECCSSHHHHHHHHHH--HHHHTCCSEEEESCSTTCCC
T ss_pred ----------HeEEeCCCcHHHHHHHHHH--HHHcCCCCEEEEccHHhCCc
Confidence 1455555 333333321 12224588999999988764
No 347
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.61 E-value=3 Score=47.70 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~ 38 (930)
.|..+++.+|+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999998543
No 348
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=76.29 E-value=4.7 Score=41.98 Aligned_cols=43 Identities=5% Similarity=-0.095 Sum_probs=29.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 71 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 71 (930)
-+++.+|+|+|||...+-.+.+.... ..+.+++|+.....+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-------g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-------YPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-------CTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEeccchhhH
Confidence 58999999999998655444433321 12567999987766643
No 349
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=75.81 E-value=2.4 Score=47.09 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=32.8
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 480 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~ 480 (930)
...++++.|+||||||.. +-+++..+.. .|..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 357899999999999997 4445554443 2567889999988864
No 350
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.29 E-value=4.2 Score=42.98 Aligned_cols=56 Identities=16% Similarity=-0.065 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHH-HHHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL-ALQTLEIFT 78 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L-~~q~~~~~~ 78 (930)
|.-+++.+|+|+|||...+--+.... . .......+.+++|+.-...+ ..++.+.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~-~--~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~ 163 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQ-L--PPEKGGLSGKAVYIDTEGTFRWERIENMAK 163 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT-S--CGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHh-c--ccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 45699999999999986544433321 1 00000114568888755432 333433333
No 351
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=74.98 E-value=8.2 Score=38.33 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPI 41 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~ 41 (930)
.|.-+++.+|+|+|||.....-+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45679999999999998655443
No 352
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=74.08 E-value=4.3 Score=42.32 Aligned_cols=42 Identities=5% Similarity=-0.079 Sum_probs=27.9
Q ss_pred cEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHH
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELA 479 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa 479 (930)
-+.+.+|.|+|||...+-.+.+.... ..+.+++++..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-------g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-------YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-------CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEeccchhh
Confidence 47899999999998644444433321 2356789988765554
No 353
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.95 E-value=15 Score=43.73 Aligned_cols=155 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcC-----------CcE
Q psy15524 364 LFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDG-----------GDV 432 (930)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~-----------~d~ 432 (930)
+...+..+.-..........+......+|+++.|+...+... ++.+.-.+... +.+
T Consensus 175 ~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l-------------~e~v~~pl~~p~~f~~~g~~~p~GI 241 (806)
T 3cf2_A 175 IVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQI-------------KEMVELPLRHPALFKAIGVKPPRGI 241 (806)
T ss_dssp ECCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHH-------------HHHHHHHHHCCGGGTSCCCCCCCEE
T ss_pred EECCCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHH-------------HHHHHHHccCHHHHhhcCCCCCCeE
Q ss_pred EEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHHHHH
Q psy15524 433 LVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA 512 (930)
Q Consensus 433 lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 512 (930)
++.+|.|+|||+. .-.+...+.. -++.+..-++.......-.+...
T Consensus 242 LL~GPPGTGKT~L-AraiA~elg~------------~~~~v~~~~l~sk~~gese~~lr--------------------- 287 (806)
T 3cf2_A 242 LLYGPPGTGKTLI-ARAVANETGA------------FFFLINGPEIMSKLAGESESNLR--------------------- 287 (806)
T ss_dssp EEECCTTSCHHHH-HHHHHTTTTC------------EEEEEEHHHHHSSCTTHHHHHHH---------------------
T ss_pred EEECCCCCCHHHH-HHHHHHHhCC------------eEEEEEhHHhhcccchHHHHHHH---------------------
Q ss_pred HHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcC-------cHHHHHHHHHHHhhcCccceEEEEccc
Q psy15524 513 RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG-------YERDIAEFLEILKKQKPQFQSILLSAT 585 (930)
Q Consensus 513 ~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g-------~~~~l~~i~~~l~~~~~~~q~vl~SAT 585 (930)
.+.+.... ..-.+|+|||+|.+.... -...+..++..+.......+++.+-||
T Consensus 288 --------------~lF~~A~~------~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 288 --------------KAFEEAEK------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp --------------HHHHHHTT------SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred --------------HHHHHHHH------cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
No 354
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=73.91 E-value=8.4 Score=40.56 Aligned_cols=58 Identities=16% Similarity=-0.048 Sum_probs=31.1
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH-HHHHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL-ALQTLEIFTK 488 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL-a~Q~~~~~~~ 488 (930)
.|.-+++.+|+|+|||...+--+...... ..+ ...+.+++++.-...+ ..++.+.+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~--~~~-gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLP--PEK-GGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSC--GGG-TCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcc--ccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45668999999999998644333321111 000 1124578888754322 3444444433
No 355
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=73.15 E-value=10 Score=42.34 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=45.5
Q ss_pred CceEEEEecchhhHHHHHHHHhhhcCCCceEEEecCCCCHHHHHHHHHHhhcCCCcEEEeccccccccCCCCccEEEEec
Q psy15524 657 ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT 736 (930)
Q Consensus 657 ~~k~iVF~~s~~~~~~~~~~l~~~~~~~~~~~~lhg~~~~~~R~~v~~~F~~~~~~vLv~T~~~~~GlDip~v~~VI~~~ 736 (930)
+.++++.+.|...++.+.+.|.+. ++....... .. .+..| .|.++..-+..|+-+|+..++|..+
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~---~i~~~~~~~-~~---------~~~~g--~v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARI---KIAPQRIMR-LD---------EASDR--GRYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGG---TCCCEECSC-GG---------GCCTT--CEEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCeEEEEeCChHHHHHHHHHHHHc---CCCceecCc-hh---------hcCCC--cEEEEEcccccCcccCCCCEEEEEc
Confidence 468999999999999999999875 454332211 10 12334 4677777889999999888777654
No 356
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.12 E-value=5 Score=42.00 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l 39 (930)
+.++++.||+|+|||.....
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999986543
No 357
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=71.72 E-value=6.2 Score=41.54 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPII 42 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l 42 (930)
|.-+++.+|+|+|||...+--+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999986544443
No 358
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=71.46 E-value=6.5 Score=42.02 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
.+.-+++.+|||||||.. +-.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 344689999999999975 33344443
No 359
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=70.77 E-value=2.4 Score=45.21 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=20.8
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| +++-++||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566778888 788999999999884
No 360
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=70.31 E-value=4.1 Score=43.46 Aligned_cols=41 Identities=34% Similarity=0.286 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L 69 (930)
|.-+++.+|+|+|||.. ++.++..+.. .+..++++.....+
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~--------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK--------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH--------TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh--------cCCeEEEEeccccc
Confidence 44689999999999975 4444443332 13458888765444
No 361
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.95 E-value=7.9 Score=46.31 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=15.3
Q ss_pred cEEEEcCCCChHHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l 39 (930)
++++++|||+|||..+-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 499999999999986543
No 362
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=69.01 E-value=6.7 Score=37.83 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
.++++++|+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999998643
No 363
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=68.95 E-value=2.9 Score=43.96 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=20.4
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4555678888 788999999999984
No 364
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=67.79 E-value=3.4 Score=43.90 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=21.8
Q ss_pred HhHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 421 LSIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 421 ~~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
..+..++.|.| ++.-++||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 36677888988 788999999999984
No 365
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=67.67 E-value=3.3 Score=44.06 Aligned_cols=26 Identities=42% Similarity=0.574 Sum_probs=22.0
Q ss_pred HhHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 421 LSIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 421 ~~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
..+..++.|.| +++-++||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36777889988 778999999999985
No 366
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=67.45 E-value=3.1 Score=44.17 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=20.2
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3455678888 788999999999984
No 367
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=67.32 E-value=9.5 Score=43.01 Aligned_cols=147 Identities=12% Similarity=0.063 Sum_probs=69.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhcCCc-----eeEEee
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI-----VPSWLT 93 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~-----~~~~~~ 93 (930)
.|.-+++.|++|+|||...+--+.+ +.. ..+..+++++-... ..|+..++.......+.. ....+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~-~a~-------~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~ 311 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ-WGT-------AMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIE 311 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH-HTT-------TSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH-HHH-------hcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCC
Confidence 4556999999999999854444433 322 11344777764332 345555543322211100 000000
Q ss_pred CCCchHHHHHHhcCCCcEEEE------ChHHHHHHHhcCCCccCCCccEEEEccccccccc----CcHHHHHHHHHHHhh
Q psy15524 94 GGEKMKSEKARIRKGISILVA------TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ----GYERDIAEFLEILKK 163 (930)
Q Consensus 94 g~~~~~~~~~~l~~~~~Ilv~------Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~----~~~~~~~~i~~~l~~ 163 (930)
..........+....++.+. |++.+...+.. ...-.++++||||=...+... .....+..++..|+.
T Consensus 312 -~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~--~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~ 388 (503)
T 1q57_A 312 -NGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAY--MRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKG 388 (503)
T ss_dssp -TSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHH--HHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHH--HHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 00111111111112234443 34444443332 111236899999999877532 233455556655543
Q ss_pred c--CCCceEEEEEeec
Q psy15524 164 Q--KPQFQSILLSATL 177 (930)
Q Consensus 164 ~--~~~~~~i~lSAT~ 177 (930)
. ..++.+++++-.-
T Consensus 389 lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 389 FAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHTCEEEEEEECC
T ss_pred HHHHHCCeEEEEEcCC
Confidence 2 2356677666553
No 368
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=67.30 E-value=5.2 Score=44.22 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=30.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL 71 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~ 71 (930)
..++++.|+||||||... .+++..+.. .+..++|+=|--++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 458999999999999974 344444433 1445888888888753
No 369
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=67.27 E-value=3.2 Score=44.48 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=20.3
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4556778888 788999999999884
No 370
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=67.23 E-value=3.3 Score=43.64 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=21.2
Q ss_pred HhHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 421 LSIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 421 ~~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
..+..++.|.| ++.-++||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566778888 788999999999884
No 371
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=67.17 E-value=48 Score=36.30 Aligned_cols=42 Identities=26% Similarity=0.215 Sum_probs=25.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEc--ccHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL--PTRELALQ 72 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~--P~~~L~~q 72 (930)
-+++++++|+|||....--+ ..+.. .|.+++++. |.+.-+.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~--------~G~kVllv~~D~~R~aa~e 145 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK--------RGYKVGVVCSDTWRPGAYH 145 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT--------TTCCEEEEECCCSSTHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH--------CCCeEEEEeCCCcchhHHH
Confidence 48899999999998754333 23322 234466665 44554433
No 372
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=67.11 E-value=3.3 Score=43.98 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=20.0
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3455678887 788999999999884
No 373
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=66.76 E-value=3.3 Score=44.93 Aligned_cols=25 Identities=44% Similarity=0.690 Sum_probs=20.1
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.+ +++-++||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455678887 788999999999884
No 374
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=66.74 E-value=3.4 Score=44.05 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=20.1
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3445678888 788999999999874
No 375
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=66.68 E-value=3.4 Score=44.17 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=20.3
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4455678888 788999999999984
No 376
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=66.66 E-value=3.4 Score=43.98 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=20.3
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.+ ++.-++||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4555678888 788999999999884
No 377
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=66.59 E-value=3.4 Score=44.11 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=20.8
Q ss_pred HhHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 421 LSIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 421 ~~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
..+..++.|.| ++.-++||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34556678888 778999999999884
No 378
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=66.57 E-value=3.4 Score=44.10 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=21.0
Q ss_pred HhHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 421 LSIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 421 ~~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
..+..++.|.| ++.-++||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 34566778988 788999999999984
No 379
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=66.51 E-value=12 Score=35.24 Aligned_cols=121 Identities=13% Similarity=0.192 Sum_probs=72.4
Q ss_pred cHHHHHHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHHHhhhc
Q psy15524 7 TTVQQLSIQPILDGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF 84 (930)
Q Consensus 7 ~~~Q~~ai~~~~~g~--~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 84 (930)
.+.|..++..++... =.++.++-|++|+-..+..++..... .|.++.+|+|+..-.....+..
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--------~Gr~V~vLAp~~~s~~~l~~~~------- 100 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--------QGREVQIIAADRRSQMNMKQDE------- 100 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--------TTCCEEEECSTTHHHHHHSCTT-------
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--------cCeEEEEEcCchHHHHHHHhhc-------
Confidence 467889998887543 37888999999998865555444332 4666999999988655443321
Q ss_pred CCceeEEeeCCCchHHHHHHhcCCCcEEEEChHHHHHHHhcCCCccCCCccEEEEcccccccccCcHHHHHHHHHHHhhc
Q psy15524 85 TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 164 (930)
Q Consensus 85 ~~~~~~~~~g~~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~~l~~l~~vViDE~h~~~~~~~~~~~~~i~~~l~~~ 164 (930)
+ .. |. ++ |- ..+.. ....|..=+.+|||||-.|. ..++..+++..+..
T Consensus 101 ~-l~-----~~---------------t~--t~----~~ll~-~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~ 148 (189)
T 2l8b_A 101 R-LS-----GE---------------LI--TG----RRQLL-EGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARH 148 (189)
T ss_dssp T-CS-----SC---------------SS--ST----TTTTT-TSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHT
T ss_pred C-cC-----cc---------------ee--eh----hhhhc-CCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhc
Confidence 1 00 00 00 10 01111 22223334589999999886 34566667666655
Q ss_pred CCCceEEEEEee
Q psy15524 165 KPQFQSILLSAT 176 (930)
Q Consensus 165 ~~~~~~i~lSAT 176 (930)
+ .|+|++=-+
T Consensus 149 n--aqvvll~~~ 158 (189)
T 2l8b_A 149 N--VQVLITDSG 158 (189)
T ss_dssp T--CCEEEEESS
T ss_pred C--CEEEEeCCc
Confidence 4 577766544
No 380
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=66.42 E-value=3.2 Score=44.34 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=20.9
Q ss_pred HhHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 421 LSIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 421 ~~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
..+..++.|.+ +++-++||||||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34556778888 788999999999874
No 381
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=66.38 E-value=3.5 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=20.2
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4555678888 788999999999874
No 382
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=66.22 E-value=3.5 Score=43.97 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=20.3
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4555678888 788999999999984
No 383
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.10 E-value=3.7 Score=44.66 Aligned_cols=25 Identities=44% Similarity=0.644 Sum_probs=21.5
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 6677888988 778999999999985
No 384
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.38 E-value=4.4 Score=43.23 Aligned_cols=42 Identities=33% Similarity=0.277 Sum_probs=27.4
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
.|.-+++.+|+|+|||.. ++.++..+.. .+..++++..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~~--------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQK--------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHHH--------TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh--------cCCeEEEEeccccc
Confidence 456689999999999975 4444444432 24567887764333
No 385
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.16 E-value=26 Score=41.93 Aligned_cols=99 Identities=22% Similarity=0.284 Sum_probs=0.0
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEc-------cCHHHHHHHHHHHHHhhccCCCcceEEE
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-------PTRELALQTLEIFTKLCKSFTWIVPSWL 501 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~-------PtreLa~Q~~~~~~~~~~~~~~~~~~~~ 501 (930)
++.+++.+|+|+|||..+-.-+- .-+...+.+. ...+....+...+.......
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~------------~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-------- 297 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVAN------------ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-------- 297 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHH------------TTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCeEEEECcCCCCHHHHHHHHHH------------HcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcC--------
Q ss_pred eCCCchHHHHHHHhcCCcEEEECchhHHHhhhccCCcccccceEEEEecchhhhhcCc-------HHHHHHHHHHHhhcC
Q psy15524 502 TGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY-------ERDIAEFLEILKKQK 574 (930)
Q Consensus 502 ~gg~~~~~~~~~~~~~~~Ilv~Tp~rl~~~l~~~~~~~~~~l~~lVlDEah~l~~~g~-------~~~l~~i~~~l~~~~ 574 (930)
..++++||+|.+....- ......++..+....
T Consensus 298 -----------------------------------------p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 298 -----------------------------------------PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp -----------------------------------------SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC
T ss_pred -----------------------------------------CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc
Q ss_pred ccceEEEEccccCH
Q psy15524 575 PQFQSILLSATLTP 588 (930)
Q Consensus 575 ~~~q~vl~SAT~~~ 588 (930)
....++++.||-++
T Consensus 337 ~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 337 QRAHVIVMAATNRP 350 (806)
T ss_dssp TTSCCEEEEECSCT
T ss_pred ccccEEEecccCCc
No 386
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.12 E-value=3.5 Score=44.26 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=20.7
Q ss_pred HhHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 421 LSIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 421 ~~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
..+..++.|.| ++.-++||||||.+.
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 34556778888 788999999999873
No 387
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=65.10 E-value=3.4 Score=44.47 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=19.4
Q ss_pred HHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 423 IQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 423 i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
+..++.|.| ++.-++||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345667888 778999999999884
No 388
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=64.93 E-value=6.3 Score=40.05 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhHH
Q psy15524 428 DGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~ 445 (930)
.+..+++.+|+|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 457799999999999975
No 389
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=64.90 E-value=3.9 Score=43.41 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=20.3
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4556678888 788999999999984
No 390
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=64.80 E-value=3.3 Score=44.39 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=20.7
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778888 778999999999884
No 391
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=64.78 E-value=66 Score=33.00 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
++-+.+.+++|+|||...
T Consensus 98 ~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SEEEEEECCTTTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455677799999999753
No 392
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=64.42 E-value=4.2 Score=43.65 Aligned_cols=25 Identities=44% Similarity=0.619 Sum_probs=21.3
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| +++-++||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5677888988 788999999999884
No 393
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=64.20 E-value=6.6 Score=47.66 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.7
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
.++++.+|+|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 46999999999999853
No 394
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=63.97 E-value=4 Score=43.93 Aligned_cols=25 Identities=44% Similarity=0.690 Sum_probs=20.3
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.+ +++-++||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4455678887 788999999999984
No 395
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.95 E-value=9.8 Score=41.59 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCchhHH
Q psy15524 429 GGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~ 445 (930)
|.-+++.+|||||||..
T Consensus 167 ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34488999999999985
No 396
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.80 E-value=3.8 Score=44.65 Aligned_cols=26 Identities=46% Similarity=0.589 Sum_probs=21.6
Q ss_pred HhHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 421 LSIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 421 ~~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
..+..++.|.| ++.-++||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677788988 788999999999984
No 397
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=63.60 E-value=1.8 Score=44.62 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCHHHHHHHHhcCCCCCCCHHH-HHhHHhhh--cCCcEEEEccCCCchhHH
Q psy15524 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQ-QLSIQPIL--DGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 389 ~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ-~~~i~~il--~~~d~lv~a~TGsGKTl~ 445 (930)
..+|+++ +-.+.+.+.|.+..- .|+. ..++..+- -.+.+++.+|.|+|||..
T Consensus 6 ~~~~~di-~g~~~~~~~l~~~i~----~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADI-GALEDIREELTMAIL----APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------C-CHHHHHHHHHHHHHT----HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHh-CCHHHHHHHHHHHHH----HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 3578888 555566666654211 1111 11222111 124499999999999985
No 398
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=63.33 E-value=8 Score=43.17 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=38.9
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhc
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~ 491 (930)
.+....+.+-||||||++. ..+++. .+..+|||+|+...|.|+++.++.++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~-a~l~~~-----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV-AEIAER-----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH-HHHHHH-----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHH-HHHHHH-----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 3456889999999999852 222221 133489999999999999999998764
No 399
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=63.27 E-value=4.3 Score=44.68 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.5
Q ss_pred hHHhhhcCCc--EEEEccCCCchhHHh
Q psy15524 422 SIQPILDGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 422 ~i~~il~~~d--~lv~a~TGsGKTl~~ 446 (930)
.+..++.|.| ++.-++||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4555678888 788999999999984
No 400
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=62.34 E-value=5.3 Score=43.42 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=28.7
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreL 478 (930)
.+.++++.++||||||...-. ++..+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~--------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM--------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH--------CCCEEEEEeCCcCH
Confidence 467899999999999976433 3333322 25667888887654
No 401
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=61.33 E-value=31 Score=37.33 Aligned_cols=45 Identities=11% Similarity=-0.058 Sum_probs=25.7
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccC
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 475 (930)
.|.-+.+.+|+|+|||.....-++..+. +......+..++++.-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~---p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQI---PLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTS---CGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhcc---CcccCCCCCcEEEEeCC
Confidence 4566899999999999864432322221 11011134567777643
No 402
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=61.29 E-value=4.9 Score=42.85 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=19.7
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3445678887 788999999999864
No 403
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=61.16 E-value=6.3 Score=44.44 Aligned_cols=31 Identities=23% Similarity=0.083 Sum_probs=22.0
Q ss_pred CCHHHHHhHHhh-hcCCcEEEEccCCCchhHH
Q psy15524 415 VTTVQQLSIQPI-LDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 415 ~~~iQ~~~i~~i-l~~~d~lv~a~TGsGKTl~ 445 (930)
+++.+..-+... -.|..+++.+|||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 444454444443 3577899999999999975
No 404
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=60.89 E-value=6.2 Score=40.09 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy15524 18 LDGGDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 18 ~~g~~~lv~apTGsGKT~~~ 37 (930)
..+.++++.+|+|+|||...
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35678999999999999854
No 405
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=60.67 E-value=6.8 Score=44.19 Aligned_cols=31 Identities=26% Similarity=0.134 Sum_probs=21.9
Q ss_pred CcHHHHHHHHH-hhcCCcEEEEcCCCChHHHH
Q psy15524 6 VTTVQQLSIQP-ILDGGDVLVRSQTGSGKTLA 36 (930)
Q Consensus 6 l~~~Q~~ai~~-~~~g~~~lv~apTGsGKT~~ 36 (930)
+++.+..-+.. +..|.++++++|||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444443433 45788999999999999974
No 406
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=60.54 E-value=8.6 Score=37.51 Aligned_cols=32 Identities=28% Similarity=0.177 Sum_probs=25.8
Q ss_pred CCCHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 414 ~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
.-+.-|..++..+..|.-+.+.+|.|||||..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 33445777888887888899999999999985
No 407
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=59.89 E-value=5.7 Score=41.72 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=19.4
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..++||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344668887 788999999999874
No 408
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=59.28 E-value=7.9 Score=37.77 Aligned_cols=35 Identities=29% Similarity=0.177 Sum_probs=28.6
Q ss_pred CccCcHHHHHHHHHhhcCCcEEEEcCCCChHHHHH
Q psy15524 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 3 ~~~l~~~Q~~ai~~~~~g~~~lv~apTGsGKT~~~ 37 (930)
++.-+.-|..++..+..|.-+.+.+|.|+|||..+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33446667888888889999999999999999854
No 409
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=59.10 E-value=5 Score=42.41 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=19.3
Q ss_pred HHhhcCCcEEEEcCCCChHHHHHH
Q psy15524 15 QPILDGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 15 ~~~~~g~~~lv~apTGsGKT~~~~ 38 (930)
..+..+.++++.+|+|+|||...-
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 344568899999999999998543
No 410
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=58.97 E-value=5.2 Score=44.93 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.1
Q ss_pred HHHHhhcCCcEEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~~lv~apTGsGKT~~~ 37 (930)
+...+..|.++++.||+|+|||..+
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHhcCCeeEeecCchHHHHHHH
Confidence 3444567889999999999999853
No 411
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=58.89 E-value=8.8 Score=43.07 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=22.9
Q ss_pred CHHHHHhHHhhhcCCcEEEEccCCCchhHH
Q psy15524 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 416 ~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+=..++-.+..+.++++.+|+|+|||..
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 334445555666789999999999999985
No 412
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=58.84 E-value=5.9 Score=41.94 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=19.0
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..++||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344567887 788999999999874
No 413
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=58.09 E-value=11 Score=38.96 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
++.+++.+|+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999863
No 414
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=57.77 E-value=6.8 Score=41.62 Aligned_cols=25 Identities=44% Similarity=0.618 Sum_probs=20.6
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5566778887 788899999999875
No 415
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=57.67 E-value=9.7 Score=35.84 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
.+++++||+|+|||....
T Consensus 44 ~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999998643
No 416
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=57.64 E-value=12 Score=39.36 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.9
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
+.+++.+|+|+|||..+
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 67999999999999863
No 417
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=57.43 E-value=6.5 Score=42.58 Aligned_cols=24 Identities=46% Similarity=0.747 Sum_probs=19.0
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..+.||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344567887 788999999999874
No 418
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=57.36 E-value=7.1 Score=41.45 Aligned_cols=25 Identities=44% Similarity=0.644 Sum_probs=20.2
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4455678887 788999999999875
No 419
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=57.34 E-value=7 Score=41.48 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=18.7
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 15 QPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 15 ~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
..++.|.| ++..++||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 44567887 788999999999874
No 420
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=57.21 E-value=6.7 Score=41.91 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=19.2
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..++||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 344668887 788999999999874
No 421
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=57.08 E-value=7.2 Score=41.06 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=20.3
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556778887 788999999999874
No 422
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=56.96 E-value=6.7 Score=41.77 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=18.6
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 15 QPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 15 ~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
..++.|.| ++..++||||||...
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34567887 788999999999864
No 423
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=56.90 E-value=6.8 Score=41.55 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=19.0
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..++||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 344567887 788899999999874
No 424
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=56.90 E-value=7 Score=36.74 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+.++++.+|+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4579999999999998644
No 425
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=56.49 E-value=7 Score=41.84 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=18.5
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 15 QPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 15 ~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
..++.|.| ++..++||||||...
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34567887 788999999999874
No 426
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=56.41 E-value=6.8 Score=41.71 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=19.1
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..++||||||...
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 344567887 788999999999874
No 427
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=56.23 E-value=7.5 Score=41.62 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=18.8
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..++||||||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 344567887 788999999999764
No 428
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.22 E-value=7.7 Score=42.13 Aligned_cols=25 Identities=44% Similarity=0.644 Sum_probs=20.6
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4566778987 788899999999975
No 429
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=56.21 E-value=7.1 Score=41.44 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=19.1
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..++||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 344567887 788999999999874
No 430
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=56.21 E-value=7.1 Score=41.58 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=19.4
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3445668887 788899999999874
No 431
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=56.16 E-value=7.1 Score=41.58 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=19.8
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445678887 788899999999874
No 432
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=56.07 E-value=8.1 Score=41.93 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=27.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~ 68 (930)
.+.++++.+|||+|||...-.-+.+.. . .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~--------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M--------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T--------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H--------CCCEEEEEeCCcC
Confidence 466899999999999986444333322 2 2445777777655
No 433
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=55.61 E-value=11 Score=40.48 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l 39 (930)
.+.++++++|+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999996443
No 434
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.54 E-value=20 Score=46.37 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=55.3
Q ss_pred CcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHHHHhhccCCCcceEEEeCCCchHH
Q psy15524 430 GDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~~gg~~~~~ 509 (930)
+-+.+.+|.|||||... ++++...++ .|..++++.+-.+|.... +++++-+..
T Consensus 1432 ~~iei~g~~~sGkttl~-~~~~a~~~~--------~g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLT-LQVIAAAQR--------EGKTCAFIDAEHALDPIY---ARKLGVDID--------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHHHH--------TTCCEEEECTTSCCCHHH---HHHTTCCGG---------------
T ss_pred CEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEecCCCCCHHH---HHHcCCCHH---------------
Confidence 45889999999999874 445544443 367789998877776554 444432211
Q ss_pred HHHHHhcCCcEEEECchhHHHhhhccC-CcccccceEEEEecchhhhh
Q psy15524 510 EKARIRKGISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADRILD 556 (930)
Q Consensus 510 ~~~~~~~~~~Ilv~Tp~rl~~~l~~~~-~~~~~~l~~lVlDEah~l~~ 556 (930)
++++.-|..--+++.-.. ...-..+++||+|.+..+..
T Consensus 1485 ---------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ---------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ---------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ---------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 255666644332222111 12234588999999887753
No 435
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=55.35 E-value=37 Score=36.73 Aligned_cols=44 Identities=9% Similarity=-0.120 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEccc
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~ 66 (930)
|.-+.+.+|+|+|||.....-++..+.. ......+..++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIP---LDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccC---cccCCCCCcEEEEeCC
Confidence 4569999999999998654333332211 1001124567877643
No 436
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.26 E-value=11 Score=37.86 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=14.6
Q ss_pred CcEEEEccCCCchhHHh
Q psy15524 430 GDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~~ 446 (930)
+.+++.+|+|+|||..+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999753
No 437
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=55.02 E-value=70 Score=35.49 Aligned_cols=55 Identities=16% Similarity=0.313 Sum_probs=28.0
Q ss_pred cceEEEEecchhhhh-cCcHHHHHHHHHHHhhc---CccceEEEEccccCHHHHHHHhh
Q psy15524 542 KVEHLVLDEADRILD-QGYERDIAEFLEILKKQ---KPQFQSILLSATLTPAVQRLAGM 596 (930)
Q Consensus 542 ~l~~lVlDEah~l~~-~g~~~~l~~i~~~l~~~---~~~~q~vl~SAT~~~~~~~l~~~ 596 (930)
.++++++|=+-++.. ......+..++...+.. .+..-++.++||........++.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~ 433 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL 433 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHH
Confidence 356777776655421 22223444555444422 23334667888877554444443
No 438
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=54.85 E-value=7.3 Score=41.59 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=19.1
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..++||||||...
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344668887 788999999999864
No 439
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=54.38 E-value=7.1 Score=40.74 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q psy15524 18 LDGGDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 18 ~~g~~~lv~apTGsGKT~~~ 37 (930)
..+.++++.+|+|+|||.++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34678999999999999864
No 440
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=54.38 E-value=7.6 Score=38.76 Aligned_cols=51 Identities=27% Similarity=0.238 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHHhhCCcCCCCCCeEEEEEcccHHHHHHHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 79 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~ 79 (930)
|.-+++.|++|+|||...+--+.+..... +..++|++-.. -..++.+++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--------~~~v~~~s~E~-~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--------GEPGVFVTLEE-RARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--------CCCEEEEESSS-CHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--------CCCceeecccC-CHHHHHHHHHH
Confidence 45699999999999976443343333321 22367766332 23444444433
No 441
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=54.24 E-value=8 Score=41.59 Aligned_cols=25 Identities=44% Similarity=0.724 Sum_probs=19.5
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAYA 38 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~~ 38 (930)
+..++.|.| ++..++||||||....
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEec
Confidence 344667887 7889999999998743
No 442
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.97 E-value=15 Score=38.35 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.5
Q ss_pred CcEEEEccCCCchhHH
Q psy15524 430 GDVLVRSQTGSGKTLA 445 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~ 445 (930)
..+++.+|+|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999985
No 443
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=53.77 E-value=13 Score=39.89 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
....+++.+|+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999863
No 444
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=53.73 E-value=8 Score=41.48 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=18.6
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 15 QPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 15 ~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
..++.|.| ++..++||||||...
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 34567887 788999999999864
No 445
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=53.60 E-value=7.7 Score=41.58 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLA 36 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~ 36 (930)
+..|..+++++|||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45789999999999999984
No 446
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=53.59 E-value=6.1 Score=37.45 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~ 37 (930)
.|+-+++++|+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999853
No 447
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.45 E-value=6.3 Score=40.04 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=16.3
Q ss_pred hhcCCcEEEEccCCCchhHH
Q psy15524 426 ILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 426 il~~~d~lv~a~TGsGKTl~ 445 (930)
+..|.-+.+.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 33566689999999999975
No 448
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=53.40 E-value=6 Score=37.50 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCchhHH
Q psy15524 428 DGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~ 445 (930)
.|+=+++.+|+|||||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999974
No 449
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=53.29 E-value=6 Score=37.36 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCchhHHhhHHHHHHH
Q psy15524 429 GGDVLVRSQTGSGKTLAYAIPIIQKL 454 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~lp~l~~l 454 (930)
+..+++.+|+|+|||... -.+.+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 356999999999999863 3334443
No 450
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.23 E-value=8 Score=42.05 Aligned_cols=25 Identities=48% Similarity=0.643 Sum_probs=20.5
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4566778887 788899999999874
No 451
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=53.02 E-value=7.3 Score=41.66 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=19.9
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3455678887 778899999999874
No 452
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=52.89 E-value=6.3 Score=42.27 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=16.9
Q ss_pred hhcCCcEEEEccCCCchhHH
Q psy15524 426 ILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 426 il~~~d~lv~a~TGsGKTl~ 445 (930)
+..|..+++.+|||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34678899999999999974
No 453
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.69 E-value=17 Score=41.01 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=25.7
Q ss_pred cceEEEEecchhhhhcCcHHHHHHHHHHHhhcCccceEEEEcccc
Q psy15524 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586 (930)
Q Consensus 542 ~l~~lVlDEah~l~~~g~~~~l~~i~~~l~~~~~~~q~vl~SAT~ 586 (930)
.-.+|||||+|.+..... ..+..+...+.. ...++++++++.
T Consensus 148 ~~~vliIDEid~l~~~~~-~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDR-GGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTST-THHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhH-HHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 456899999999865322 223444444443 245677777764
No 454
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=52.68 E-value=6.8 Score=41.27 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+-++|++|||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999998543
No 455
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=52.61 E-value=1.8e+02 Score=31.51 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCchhHHhh
Q psy15524 429 GGDVLVRSQTGSGKTLAYA 447 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~~ 447 (930)
++-+.+.+++|+|||.+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3446778999999998633
No 456
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=52.61 E-value=7.8 Score=41.66 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=18.0
Q ss_pred HhhcCCc--EEEEcCCCChHHHHH
Q psy15524 16 PILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 16 ~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.++.|.| ++..++||||||...
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 3567887 788999999999874
No 457
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=52.52 E-value=11 Score=41.13 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=24.9
Q ss_pred cHHHHHHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHH
Q psy15524 7 TTVQQLSIQPILD--GGDVLVRSQTGSGKTLAYAIPIIQKL 45 (930)
Q Consensus 7 ~~~Q~~ai~~~~~--g~~~lv~apTGsGKT~~~~l~~l~~l 45 (930)
.+-+..++..++. |.-+++.+|||||||.. +-.++..+
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 4556666665543 44589999999999974 33344433
No 458
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=52.51 E-value=13 Score=38.54 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
...+++.+|+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999753
No 459
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=52.44 E-value=6.1 Score=41.13 Aligned_cols=15 Identities=33% Similarity=0.275 Sum_probs=13.0
Q ss_pred cEEEEccCCCchhHH
Q psy15524 431 DVLVRSQTGSGKTLA 445 (930)
Q Consensus 431 d~lv~a~TGsGKTl~ 445 (930)
-+++.+|||||||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 378899999999975
No 460
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=52.37 E-value=6.8 Score=39.82 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=17.3
Q ss_pred hhcCCcEEEEcCCCChHHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~ 37 (930)
+..|.-+++.+|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446777999999999999853
No 461
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=52.32 E-value=9.2 Score=42.01 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=19.1
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 14 IQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 14 i~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
+..++.|.| ++..+.||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344568887 788999999999874
No 462
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=52.29 E-value=6.1 Score=41.02 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=12.6
Q ss_pred EEEEccCCCchhHH
Q psy15524 432 VLVRSQTGSGKTLA 445 (930)
Q Consensus 432 ~lv~a~TGsGKTl~ 445 (930)
+++.+|||||||..
T Consensus 13 i~i~GptgsGKt~l 26 (316)
T 3foz_A 13 IFLMGPTASGKTAL 26 (316)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 78899999999975
No 463
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=52.26 E-value=14 Score=39.41 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
.+.+++.+|+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999863
No 464
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=52.07 E-value=7 Score=40.75 Aligned_cols=18 Identities=33% Similarity=0.684 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCchhHH
Q psy15524 428 DGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~ 445 (930)
.+..+++.++||+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 456799999999999985
No 465
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=52.06 E-value=12 Score=37.92 Aligned_cols=32 Identities=9% Similarity=-0.043 Sum_probs=22.0
Q ss_pred cHHHHH-HHHHhhcCC-----cEEEEcCCCChHHHHHH
Q psy15524 7 TTVQQL-SIQPILDGG-----DVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 7 ~~~Q~~-ai~~~~~g~-----~~lv~apTGsGKT~~~~ 38 (930)
.|++-. ++..+++|+ .+++.+|.|+|||+.+.
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 85 DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344432 345566654 49999999999998655
No 466
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=51.78 E-value=7.3 Score=41.02 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.9
Q ss_pred CcEEEEccCCCchhHH
Q psy15524 430 GDVLVRSQTGSGKTLA 445 (930)
Q Consensus 430 ~d~lv~a~TGsGKTl~ 445 (930)
+-+++.+|||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999975
No 467
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=51.66 E-value=9.9 Score=40.76 Aligned_cols=25 Identities=44% Similarity=0.619 Sum_probs=20.0
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q psy15524 13 SIQPILDGGD--VLVRSQTGSGKTLAY 37 (930)
Q Consensus 13 ai~~~~~g~~--~lv~apTGsGKT~~~ 37 (930)
.+..++.|.| ++..++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4455678887 788899999999864
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=51.50 E-value=7.1 Score=37.64 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~ 37 (930)
|+-+++.+|||+|||...
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 556999999999998753
No 469
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=51.38 E-value=8.4 Score=41.05 Aligned_cols=19 Identities=42% Similarity=0.550 Sum_probs=16.2
Q ss_pred cCCc--EEEEccCCCchhHHh
Q psy15524 428 DGGD--VLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d--~lv~a~TGsGKTl~~ 446 (930)
.|.+ ++.-++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 689999999999874
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=51.35 E-value=7.8 Score=40.22 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q psy15524 22 DVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 22 ~~lv~apTGsGKT~~~~ 38 (930)
-+++++|||+|||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999998643
No 471
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=50.97 E-value=6.8 Score=41.36 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=18.3
Q ss_pred HhhhcCCcEEEEccCCCchhHH
Q psy15524 424 QPILDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 424 ~~il~~~d~lv~a~TGsGKTl~ 445 (930)
..+..+.++++.+|+|+|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3445678999999999999975
No 472
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=50.93 E-value=21 Score=40.17 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=30.0
Q ss_pred hcCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccCHHHHHHHHHHH
Q psy15524 427 LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIF 486 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 486 (930)
..|.=+++.|++|+|||...+ -+...+.. ..|..+++++-- +-..|+...+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal-~~a~~~a~-------~~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVR-QQALQWGT-------AMGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHH-HHHHHHTT-------TSCCCEEEEESS-SCHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHH-HHHHHHHH-------hcCCcEEEEecc-CCHHHHHHHH
Confidence 345568999999999997543 33333321 125567877642 2234555444
No 473
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=50.58 E-value=7.6 Score=40.38 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+-++|++|||+|||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347889999999998643
No 474
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=50.52 E-value=7 Score=36.88 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCchhHHh
Q psy15524 427 LDGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~~ 446 (930)
..++.+++.+++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35677999999999999853
No 475
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=50.44 E-value=15 Score=36.19 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=17.3
Q ss_pred cEEEEccCCCchhHHhhHHHHHH
Q psy15524 431 DVLVRSQTGSGKTLAYAIPIIQK 453 (930)
Q Consensus 431 d~lv~a~TGsGKTl~~~lp~l~~ 453 (930)
++++.++.|+|||.+.+--+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999854444433
No 476
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=50.18 E-value=8.6 Score=39.98 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~ 38 (930)
.++.+++++|+|+|||...-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 35679999999999998643
No 477
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=50.17 E-value=8.1 Score=37.24 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCchhHH
Q psy15524 429 GGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~ 445 (930)
|+-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 55689999999999864
No 478
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=50.04 E-value=6.9 Score=36.90 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=18.5
Q ss_pred hhcCCcEEEEcCCCChHHHHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~~~l 39 (930)
+..++.+++.+++|||||.+.-.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHH
Confidence 34677899999999999986443
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=49.83 E-value=12 Score=39.96 Aligned_cols=18 Identities=44% Similarity=0.641 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
++.+++.+|+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999863
No 480
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=49.64 E-value=12 Score=41.47 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCccccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHHhhhcCCcEEEEccCCCchhHHh
Q psy15524 381 PVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 381 ~~~~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~~il~~~d~lv~a~TGsGKTl~~ 446 (930)
+..+..-....|+++ .-.....+.+.. +-...-.....++.+++.+|+|+|||..+
T Consensus 25 ~l~~~~~~~~~~~~i-iG~~~~~~~l~~---------~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 25 GLDESGLAKQAASGL-VGQENAREACGV---------IVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CBCTTSCBCSEETTE-ESCHHHHHHHHH---------HHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred CCCcccChhhchhhc-cCHHHHHHHHHH---------HHHHHHhCCCCCCeEEEECCCcCCHHHHH
No 481
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=49.58 E-value=7.8 Score=37.40 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~ 38 (930)
.|+-+.+++|+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998543
No 482
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=49.53 E-value=7.3 Score=41.16 Aligned_cols=19 Identities=47% Similarity=0.520 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCchhHH
Q psy15524 427 LDGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 427 l~~~d~lv~a~TGsGKTl~ 445 (930)
..|+.+.+.+|||||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999973
No 483
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=49.22 E-value=8.5 Score=40.66 Aligned_cols=20 Identities=50% Similarity=0.561 Sum_probs=17.5
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q psy15524 17 ILDGGDVLVRSQTGSGKTLA 36 (930)
Q Consensus 17 ~~~g~~~lv~apTGsGKT~~ 36 (930)
+..|..+++.+|||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 44789999999999999983
No 484
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=48.87 E-value=7.9 Score=37.30 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.++.+++.+++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4667999999999999863
No 485
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=48.64 E-value=20 Score=40.23 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=20.2
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHH
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQ 455 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~ 455 (930)
.+.+++|.++||||||.+.-.-+...+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999874433444444
No 486
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=48.59 E-value=8.3 Score=40.01 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
+.++++++|+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999998643
No 487
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=48.53 E-value=9.3 Score=39.46 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
++.+++.||+|+|||...-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5689999999999998643
No 488
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=48.05 E-value=9.7 Score=38.62 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCHHHHHhHH--------hhhcCCcEEEEccCCCchhHHh
Q psy15524 384 EALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQ--------PILDGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 384 ~~~~~~~~f~~l~~l~~~~~~~l~~~~~~~~~~~iQ~~~i~--------~il~~~d~lv~a~TGsGKTl~~ 446 (930)
.+.....+|+++ .-.+...+.+.+ ....+. .....+.+++.+|+|+|||..+
T Consensus 2 ~~~~~~~~~~~i-~G~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 2 NAEKPNVRFKDM-AGNEEAKEEVVE----------IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCCCCCSTTS-SSCTTTHHHHHH----------HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CccCCCCCHHHh-CCcHHHHHHHHH----------HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
No 489
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=47.94 E-value=8.6 Score=36.38 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~l 39 (930)
++.+++++|+|||||.+.-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56799999999999986543
No 490
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.74 E-value=9.4 Score=41.84 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAY 37 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~ 37 (930)
+.+|++||+|+|||+.+
T Consensus 216 rGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeeEEECcCCCCHHHHH
Confidence 57999999999999863
No 491
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=47.71 E-value=11 Score=36.31 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q psy15524 19 DGGDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 19 ~g~~~lv~apTGsGKT~~~~l 39 (930)
.++.+++++|+|||||...-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 567899999999999986443
No 492
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=47.49 E-value=8.5 Score=37.14 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.3
Q ss_pred cCCcEEEEccCCCchhHH
Q psy15524 428 DGGDVLVRSQTGSGKTLA 445 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~ 445 (930)
.|+-+.+.+|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999985
No 493
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=47.01 E-value=7.9 Score=39.08 Aligned_cols=14 Identities=43% Similarity=0.330 Sum_probs=12.5
Q ss_pred EEEEccCCCchhHH
Q psy15524 432 VLVRSQTGSGKTLA 445 (930)
Q Consensus 432 ~lv~a~TGsGKTl~ 445 (930)
+++.+|||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 68899999999975
No 494
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=46.97 E-value=8.7 Score=36.34 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHh
Q psy15524 429 GGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 429 ~~d~lv~a~TGsGKTl~~ 446 (930)
++.+++.+++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 495
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=46.92 E-value=8.6 Score=38.79 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy15524 20 GGDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 20 g~~~lv~apTGsGKT~~~~ 38 (930)
.+.+++++|+|+|||...-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3579999999999998643
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=46.72 E-value=9.7 Score=40.75 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYAI 39 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~l 39 (930)
+.+++.||+|+|||...-.
T Consensus 71 ~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5799999999999986443
No 497
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=46.61 E-value=9 Score=37.27 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCchhHHh
Q psy15524 428 DGGDVLVRSQTGSGKTLAY 446 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~ 446 (930)
.|+=+++.+|+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
No 498
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=46.61 E-value=8.4 Score=35.81 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=13.0
Q ss_pred EEEEccCCCchhHHh
Q psy15524 432 VLVRSQTGSGKTLAY 446 (930)
Q Consensus 432 ~lv~a~TGsGKTl~~ 446 (930)
+++.+++|||||...
T Consensus 4 I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 4 ILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999853
No 499
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=46.60 E-value=16 Score=38.88 Aligned_cols=39 Identities=23% Similarity=0.139 Sum_probs=26.4
Q ss_pred cCCcEEEEccCCCchhHHhhHHHHHHHHhhCcccCCCCCeeEEEEccC
Q psy15524 428 DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475 (930)
Q Consensus 428 ~~~d~lv~a~TGsGKTl~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 475 (930)
.|+-+++.+++|+|||..++--+.+... .|..++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEeCC
Confidence 4567899999999999875444443332 24567887763
No 500
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=45.88 E-value=11 Score=39.66 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy15524 21 GDVLVRSQTGSGKTLAYA 38 (930)
Q Consensus 21 ~~~lv~apTGsGKT~~~~ 38 (930)
+.+++++|+|+|||...-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 579999999999998643
Done!