Your job contains 1 sequence.
>psy15524
MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA
VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL
DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA
TCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTP
AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK
CQNVNEDEESKMLVFMATQDMADYHTELLSTKKKIKKLKEYNIDPDNYEIPKKTEVKSGP
ISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQ
LSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELAL
QTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKF
SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQN
PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKM
LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA
ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRI
RIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGY
TSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGKPKNKEELKNKKMAI
NKEKSFKQRGNFSKKQMLSEFDSGLPQRKP
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15524
(930 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0027602 - symbol:CG8611 species:7227 "Drosophila m... 665 4.6e-124 4
UNIPROTKB|F1S0U0 - symbol:DDX31 "Uncharacterized protein"... 665 2.1e-110 2
ZFIN|ZDB-GENE-030131-3973 - symbol:ddx31 "DEAD (Asp-Glu-A... 751 5.0e-110 2
UNIPROTKB|F8WAJ0 - symbol:DDX31 "Probable ATP-dependent R... 691 3.1e-109 2
UNIPROTKB|F1NM06 - symbol:DDX31 "Uncharacterized protein"... 681 5.8e-109 2
UNIPROTKB|F1N5H8 - symbol:DDX31 "Uncharacterized protein"... 668 1.7e-106 2
UNIPROTKB|Q9H8H2 - symbol:DDX31 "Probable ATP-dependent R... 691 1.2e-105 2
RGD|1304895 - symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box po... 770 2.1e-105 2
DICTYBASE|DDB_G0271708 - symbol:ddx31 "DEAD/DEAH box heli... 535 1.4e-89 2
TAIR|locus:2064844 - symbol:AT2G40700 species:3702 "Arabi... 466 4.8e-88 2
POMBASE|SPBC21H7.04 - symbol:dbp7 "ATP-dependent RNA heli... 492 1.7e-82 2
ASPGD|ASPL0000056064 - symbol:AN0204 species:162425 "Emer... 461 9.3e-72 2
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi... 413 2.2e-69 2
SGD|S000001732 - symbol:DBP7 "Putative ATP-dependent RNA ... 457 5.4e-69 3
CGD|CAL0000117 - symbol:DBP7 species:5476 "Candida albica... 424 6.2e-68 2
UNIPROTKB|F1MW45 - symbol:DDX55 "ATP-dependent RNA helica... 613 1.3e-63 2
UNIPROTKB|F1P8J6 - symbol:DDX55 "Uncharacterized protein"... 606 3.3e-63 2
UNIPROTKB|Q2NL08 - symbol:DDX55 "ATP-dependent RNA helica... 607 6.6e-63 2
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 414 7.4e-63 3
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 596 2.4e-62 2
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 606 1.6e-61 2
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 408 1.8e-61 3
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 407 4.5e-61 3
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 403 5.9e-61 3
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 589 6.6e-61 2
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 404 9.7e-61 3
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 409 1.0e-60 3
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 404 1.0e-60 3
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 409 1.1e-60 3
MGI|MGI:1915098 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) bo... 588 1.1e-60 2
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 409 1.3e-60 3
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 404 1.4e-60 3
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 582 1.6e-60 2
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica... 405 2.6e-60 3
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 386 7.7e-60 3
GENEDB_PFALCIPARUM|MAL7P1.113 - symbol:MAL7P1.113 "DEAD b... 389 1.5e-59 3
UNIPROTKB|Q8IBN8 - symbol:MAL7P1.113 "DEAD box helicase, ... 389 1.5e-59 3
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 397 1.7e-59 3
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 404 1.7e-59 3
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 399 2.0e-59 3
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 399 2.0e-59 3
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 399 2.6e-59 3
UNIPROTKB|F6XWM4 - symbol:DDX55 "Uncharacterized protein"... 571 3.7e-59 2
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 410 4.6e-59 3
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 399 5.4e-59 3
ZFIN|ZDB-GENE-021212-1 - symbol:ddx55 "DEAD (Asp-Glu-Ala-... 563 3.9e-58 2
TAIR|locus:2153564 - symbol:AT5G05450 species:3702 "Arabi... 551 8.8e-57 2
UNIPROTKB|F1NJA0 - symbol:DDX55 "ATP-dependent RNA helica... 547 9.3e-57 2
UNIPROTKB|Q5ZLN8 - symbol:DDX55 "ATP-dependent RNA helica... 547 9.3e-57 2
SGD|S000003570 - symbol:HCA4 "DEAD box RNA helicase" spec... 559 1.7e-54 2
ASPGD|ASPL0000061778 - symbol:AN0589 species:162425 "Emer... 379 1.1e-53 3
TAIR|locus:2825324 - symbol:AT1G71370 species:3702 "Arabi... 527 4.7e-53 2
POMBASE|SPAC1093.05 - symbol:SPAC1093.05 "ATP-dependent R... 356 5.7e-52 2
CGD|CAL0004182 - symbol:HCA4 species:5476 "Candida albica... 389 8.6e-52 2
UNIPROTKB|E2RC35 - symbol:DDX10 "Uncharacterized protein"... 354 1.4e-50 2
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 351 1.4e-50 2
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 343 1.6e-50 3
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 343 1.6e-50 3
DICTYBASE|DDB_G0291588 - symbol:ddx55 "DEAD/DEAH box heli... 441 3.8e-50 3
ZFIN|ZDB-GENE-071022-2 - symbol:ddx10 "DEAD (Asp-Glu-Ala-... 345 5.2e-50 2
TAIR|locus:2160225 - symbol:AT5G54910 species:3702 "Arabi... 335 6.0e-50 2
UNIPROTKB|Q08DT0 - symbol:DDX10 "Uncharacterized protein"... 353 6.5e-50 2
FB|FBgn0030855 - symbol:CG5800 species:7227 "Drosophila m... 539 1.0e-49 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 352 2.0e-49 2
DICTYBASE|DDB_G0284017 - symbol:ddx10 "DEAD/DEAH box heli... 364 2.3e-49 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 357 6.6e-49 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 357 6.6e-49 2
MGI|MGI:1924841 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) bo... 345 9.9e-49 2
RGD|1308990 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box po... 345 3.3e-48 2
TAIR|locus:2159527 - symbol:STRS2 "STRESS RESPONSE SUPPRE... 488 4.1e-48 2
UNIPROTKB|A4RGU2 - symbol:DBP4 "ATP-dependent RNA helicas... 338 5.1e-48 2
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 508 7.2e-48 1
WB|WBGene00021277 - symbol:Y23H5B.6 species:6239 "Caenorh... 320 1.5e-47 2
SGD|S000002602 - symbol:MSS116 "DEAD-box protein involved... 504 2.0e-47 1
ASPGD|ASPL0000072637 - symbol:AN4903 species:162425 "Emer... 483 3.9e-47 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 301 7.1e-47 3
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 332 2.0e-46 2
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 332 2.0e-46 2
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 336 2.8e-46 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 336 2.8e-46 2
UNIPROTKB|Q2KEF1 - symbol:MGCH7_ch7g1085 "Putative unchar... 471 3.8e-46 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 326 7.0e-46 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 326 7.0e-46 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 314 7.5e-46 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 314 7.5e-46 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 331 3.0e-45 2
POMBASE|SPBC691.04 - symbol:SPBC691.04 "mitochondrial ATP... 481 6.1e-45 1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 313 6.4e-45 2
WB|WBGene00015232 - symbol:B0511.6 species:6239 "Caenorha... 435 2.0e-44 2
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po... 474 3.5e-44 1
CGD|CAL0004436 - symbol:MSS116 species:5476 "Candida albi... 483 4.8e-44 1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 321 5.9e-44 2
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 319 9.2e-44 2
TAIR|locus:2159517 - symbol:PDE340 "PIGMENT DEFECTIVE 340... 491 9.3e-44 1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 307 1.6e-43 2
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 307 1.6e-43 2
SGD|S000001212 - symbol:DBP8 "ATPase, putative RNA helica... 467 2.0e-43 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 329 2.3e-43 2
UNIPROTKB|G4MSR4 - symbol:MGG_07099 "Uncharacterized prot... 483 2.3e-43 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 488 3.0e-43 1
WARNING: Descriptions of 817 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 665 (239.2 bits), Expect = 4.6e-124, Sum P(4) = 4.6e-124
Identities = 129/240 (53%), Positives = 177/240 (73%)
Query: 377 RRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRS 436
R +KPV E +F + G+HP KNL + ++I ++T+VQQ +I +L G DVLVRS
Sbjct: 314 RAVKPVKETIFTGSKISTL-GLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRS 372
Query: 437 QTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 496
QTGSGKTLAYA+P+++ LQ+ +P+I RKDG+ A++I+PTREL +QT E+ KL K +TWI
Sbjct: 373 QTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWI 432
Query: 497 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556
VP L GGE KSEKAR+RKGI+IL+ TPGRL+DH HT + K +K++ L+LDEADR+L+
Sbjct: 433 VPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLE 492
Query: 557 QGYERDIAEFLEILKKQK--------PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608
GYERD+ + +E + KQ+ PQ Q +LLSATLT VQ+LAG+TL+NP+ ID +D
Sbjct: 493 LGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKNPLYIDNSD 552
Score = 548 (198.0 bits), Expect = 1.4e-104, Sum P(4) = 1.4e-104
Identities = 105/186 (56%), Positives = 143/186 (76%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
++I ++T+VQQ +I +L G DVLVRSQTGSGKTLAYA+P+++ LQ+ +P+I RKDG+ A
Sbjct: 346 LSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLA 405
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++I+PTREL +QT E+ KL K +TWIVP L GGE KSEKAR+RKGI+IL+ TPGRL+
Sbjct: 406 LVIVPTRELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLV 465
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK--------PQFQSIL 172
DH HT + K +K++ L+LDEADR+L+ GYERD+ + +E + KQ+ PQ Q +L
Sbjct: 466 DHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRML 525
Query: 173 LSATLT 178
LSATLT
Sbjct: 526 LSATLT 531
Score = 470 (170.5 bits), Expect = 4.6e-124, Sum P(4) = 4.6e-124
Identities = 92/197 (46%), Positives = 135/197 (68%)
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+ + FFKLHGSM+Q+ER VF+ FR S VL+ TDV RG+D+P + +VQYT P ++
Sbjct: 677 QGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTA 736
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGD 802
D+VHRVGRTAR G +G ++LFL PSE + V L+ +RIRI++ + LQ LL + D
Sbjct: 737 DFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKKRIRIQQGDMYAYLQTLLP---KDD 793
Query: 803 LSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQ 862
+R V+ AA+ LQ F++ + + LH +CK + SW++FY+++ K+L+ IFN +
Sbjct: 794 EAR----TVQEAASNLQHKFQTLLEDDRELHDKSCKAFVSWMKFYSTFPKELKPIFNVRI 849
Query: 863 IHLGHFAKSFALRDAPS 879
H+GHFAKSFAL++APS
Sbjct: 850 AHMGHFAKSFALKEAPS 866
Score = 207 (77.9 bits), Expect = 1.8e-67, Sum P(4) = 1.8e-67
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 186 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK--------PQFQSVLLSAT 237
HT + K +K++ L+LDEADR+L+ GYERD+ + +E + KQ+ PQ Q +LLSAT
Sbjct: 470 HTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSAT 529
Query: 238 LTPAVQRLAGMTLQNPIQIDAAD 260
LT VQ+LAG+TL+NP+ ID +D
Sbjct: 530 LTSQVQQLAGLTLKNPLYIDNSD 552
Score = 129 (50.5 bits), Expect = 4.6e-124, Sum P(4) = 4.6e-124
Identities = 29/89 (32%), Positives = 55/89 (61%)
Query: 597 TLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDE 656
T++ +++D + T L IP++L+ ++V PPKLRLVAL+S +L K + + +
Sbjct: 569 TIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSS-LLAKEVDASP-K 626
Query: 657 ESKMLVFMATQDMADYHTELLSTVLGENI 685
+ K +VFM+T +M ++H ++L+ L +
Sbjct: 627 QFKAIVFMSTTEMVNFHHDMLNEALTRRV 655
Score = 125 (49.1 bits), Expect = 3.6e-104, Sum P(4) = 3.6e-104
Identities = 28/82 (34%), Positives = 53/82 (64%)
Query: 249 TLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDE 308
T++ +++D + T L IP++L+ ++V PPKLRLVAL+S +L K + + +
Sbjct: 569 TIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLRLVALSS-LLAKEVDASP-K 626
Query: 309 ESKMLVFMATQDMADYHTELLS 330
+ K +VFM+T +M ++H ++L+
Sbjct: 627 QFKAIVFMSTTEMVNFHHDMLN 648
Score = 48 (22.0 bits), Expect = 4.6e-124, Sum P(4) = 4.6e-124
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 900 INKEKSFKQRGNFSKKQMLSEFDSGLP 926
+ + K G S+ +SEFDSGLP
Sbjct: 939 VGRSSFMKSLGK-SRALNMSEFDSGLP 964
Score = 40 (19.1 bits), Expect = 4.2e-50, Sum P(4) = 4.2e-50
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 282 IVTPPKL--RLVALASFILGKCQNVNEDEESKML 313
I TP +L L+ ASF L K Q + DE ++L
Sbjct: 458 IGTPGRLVDHLLHTASFKLTKLQFLILDEADRLL 491
Score = 40 (19.1 bits), Expect = 8.2e-41, Sum P(3) = 8.2e-41
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 630 IVTPPKL--RLVALASFILGKCQNVNEDEESKML 661
I TP +L L+ ASF L K Q + DE ++L
Sbjct: 458 IGTPGRLVDHLLHTASFKLTKLQFLILDEADRLL 491
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 149/345 (43%), Positives = 220/345 (63%)
Query: 355 EVKSG-PISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNIT 413
E K G SSLF+NNP+IP + +K E++F +++ +HP + +N + ++
Sbjct: 150 ERKPGVKTSSLFRNNPEIPALLRPAVKQRQESVFTSDAFQALD-LHPHLISTINTVLKMS 208
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGS-GKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472
+T++Q+ SI +L+G D LVRSQTGS GKTLAY IP++Q LQ ++PKI R DG YA+I+
Sbjct: 209 SLTSIQKQSIPVLLEGRDALVRSQTGSEGKTLAYCIPMVQSLQAVKPKIQRGDGPYALIL 268
Query: 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 532
+PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH
Sbjct: 269 VPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHI 328
Query: 533 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQR 592
K T+ ++F ++ L+LDEADR+LD G+E+DIA L + ++P+ Q++LLSATLT V R
Sbjct: 329 KSTKNMRFCRIRWLILDEADRLLDLGFEKDIALILNAVNAERPERQNVLLSATLTEGVTR 388
Query: 593 LAGMTLQNPIQIDAAD-STD-IHNTTDSLV--IPDSLKQHF--IVTPPKLR----LVA-- 640
LA ++L P++I + S D +H + +++ P + P L LV
Sbjct: 389 LADISLHEPVRISVLEGSQDQMHPKSRAILGASPPAASSELDGFAIPVGLEQHVALVPSK 448
Query: 641 --LASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL-LSTVLG 682
L S Q + + KM+VF ++ ++ ++H L L T+LG
Sbjct: 449 LRLVSLAAFILQKCKFEPDQKMIVFFSSCELVEFHHSLFLQTLLG 493
Score = 582 (209.9 bits), Expect = 2.1e-110, Sum P(2) = 2.1e-110
Identities = 131/288 (45%), Positives = 177/288 (61%)
Query: 617 DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676
D IP L+QH + P KLRLV+LA+FIL KC+ + + KM+VF ++ ++ ++H L
Sbjct: 430 DGFAIPVGLEQHVALVPSKLRLVSLAAFILQKCKF---EPDQKMIVFFSSCELVEFHHSL 486
Query: 677 -LSTVLGEN--------------IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAA 721
L T+LG + + F +LHG M Q ERT VF+ F K+GVL+CTDVAA
Sbjct: 487 FLQTLLGGSGALAPGRLPSASPPLTFLRLHGDMEQEERTAVFQEFSRSKAGVLLCTDVAA 546
Query: 722 RGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIR 781
RGLDLP V WIVQYTAPSS +YVHR+GRTAR+G +GSSLL L PSE + V L + +I+
Sbjct: 547 RGLDLPQVTWIVQYTAPSSPAEYVHRIGRTARIGFQGSSLLILAPSEAEYVNSLASHKIK 606
Query: 782 IEEIKLKDCLQNL-----LSVKMEGDLSRLADG--NVETAATALQMSFESAVLQQKILHT 834
+ E+K++D L L + G A G + AT LQ FE V + +
Sbjct: 607 VSEMKMEDILSVLTRDDCFKGRRWGSQKCRAAGPQEIRERATVLQTVFEDYVHSSERTVS 666
Query: 835 SACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVIS 882
A K S+VR YA+Y ++L+HIF+ + +HLGH AKSF LRDAP +S
Sbjct: 667 WAKKALQSFVRAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPKNLS 714
Score = 539 (194.8 bits), Expect = 2.1e-110, Sum P(2) = 2.1e-110
Identities = 103/179 (57%), Positives = 141/179 (78%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGS-GKTLAYAIPIIQKLQEMRPKISRKDGIY 59
+ ++ +T++Q+ SI +L+G D LVRSQTGS GKTLAY IP++Q LQ ++PKI R DG Y
Sbjct: 205 LKMSSLTSIQKQSIPVLLEGRDALVRSQTGSEGKTLAYCIPMVQSLQAVKPKIQRGDGPY 264
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
A+I++PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL
Sbjct: 265 ALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRL 324
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+DH K T+ ++F ++ L+LDEADR+LD G+E+DIA L + ++P+ Q++LLSATLT
Sbjct: 325 VDHIKSTKNMRFCRIRWLILDEADRLLDLGFEKDIALILNAVNAERPERQNVLLSATLT 383
Score = 193 (73.0 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 52/158 (32%), Positives = 86/158 (54%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
K T+ ++F ++ L+LDEADR+LD G+E+DIA L + ++P+ Q+VLLSATLT V R
Sbjct: 329 KSTKNMRFCRIRWLILDEADRLLDLGFEKDIALILNAVNAERPERQNVLLSATLTEGVTR 388
Query: 245 LAGMTLQNPIQIDAAD-STD-IHNTTDSLV--IPDSLKQHF--IVTPPKLR----LVA-- 292
LA ++L P++I + S D +H + +++ P + P L LV
Sbjct: 389 LADISLHEPVRISVLEGSQDQMHPKSRAILGASPPAASSELDGFAIPVGLEQHVALVPSK 448
Query: 293 --LASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 328
L S Q + + KM+VF ++ ++ ++H L
Sbjct: 449 LRLVSLAAFILQKCKFEPDQKMIVFFSSCELVEFHHSL 486
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 751 (269.4 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 147/332 (44%), Positives = 228/332 (68%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNP+IP+V + + V E +F ++EE +HP + L++ +N++ +T+VQ+
Sbjct: 126 SSLFRNNPEIPDVLSPAVNQVKEKVFTSNTFEEL-NLHPHLVATLHKVLNVSSMTSVQKQ 184
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
+I ++ G D +VRSQTGSGKTLAY IP++Q LQ ++PK+ R DG AV+I+PTRELALQ
Sbjct: 185 TIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVKRSDGPLAVVIVPTRELALQ 244
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ ++F KL + FTWIVP L GGEK K+EKAR+RKGI++L++TPGRL+DH K+T ++ FS
Sbjct: 245 SFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFS 304
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
V L+LDEADRILD G+E+D+ L L P Q++LLSAT+T + RLA +++++P
Sbjct: 305 AVRWLILDEADRILDLGFEKDLTVILNALNAAGPDRQNVLLSATITEGLSRLASISMKDP 364
Query: 602 IQIDAADSTDI----------HNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 651
+ + ++ ++ +DS +P+ L+QH +V P KL LV LA+FIL KC+
Sbjct: 365 VSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLAAFILAKCKF 424
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGE 683
++ K+++F+++ + ++ L + VL E
Sbjct: 425 ---EQRQKLIIFISSCEAVEFLLNLFTAVLCE 453
Score = 587 (211.7 bits), Expect = 5.0e-110, Sum P(2) = 5.0e-110
Identities = 139/335 (41%), Positives = 192/335 (57%)
Query: 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675
+DS +P+ L+QH +V P KL LV LA+FIL KC+ ++ K+++F+++ + ++
Sbjct: 389 SDSYAVPERLQQHVVVVPSKLHLVCLAAFILAKCKF---EQRQKLIIFISSCEAVEFLLN 445
Query: 676 LLSTVLGE---NIA--------FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGL 724
L + VL E N + F++LHG+M Q ERTEVF+ F K+G+L+CTDVAARGL
Sbjct: 446 LFTAVLCEIPSNTSSKSTSCLNFYRLHGNMRQEERTEVFQEFSQCKTGILLCTDVAARGL 505
Query: 725 DLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEE 784
DLP V WIVQY P S+ +YVHRVGRTAR+G +GSSLLFL PSE V+ L N I + E
Sbjct: 506 DLPQVTWIVQYNPPVSAAEYVHRVGRTARIGAQGSSLLFLTPSETAFVDVLANHNISLSE 565
Query: 785 IKLKDCLQNLLS-VKMEG----DLSRLADG---NVETAATALQMSFESAV-LQQKILHTS 835
+K+ D L L+ + +G D R AD V AT LQ FE+ V + L T
Sbjct: 566 MKMVDILSTLMKDERFKGRGKWDSKRSADAFEQEVRERATLLQTDFENYVHASNESLQT- 624
Query: 836 ACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGXXXXXXXXXX 895
A ++R Y +Y L+HIF+ + +HLGH AKSF LRDAP G+
Sbjct: 625 AKSALQCFLRAYTTYPSSLKHIFHIRMLHLGHAAKSFGLRDAPQ---GLASSISTNPANS 681
Query: 896 XXMAINKEKSFKQRGNFSKKQ-----MLSEFDSGL 925
K+K+ + KQ M SE+DSG+
Sbjct: 682 KHSKKAKDKAKSPPKKLTAKQRVSNLMRSEYDSGM 716
Score = 530 (191.6 bits), Expect = 5.0e-110, Sum P(2) = 5.0e-110
Identities = 100/178 (56%), Positives = 138/178 (77%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+N++ +T+VQ+ +I ++ G D +VRSQTGSGKTLAY IP++Q LQ ++PK+ R DG A
Sbjct: 173 LNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVKRSDGPLA 232
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
V+I+PTRELALQ+ ++F KL + FTWIVP L GGEK K+EKAR+RKGI++L++TPGRL+
Sbjct: 233 VVIVPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLV 292
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH K+T ++ FS V L+LDEADRILD G+E+D+ L L P Q++LLSAT+T
Sbjct: 293 DHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNALNAAGPDRQNVLLSATIT 350
Score = 260 (96.6 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 55/156 (35%), Positives = 95/156 (60%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
K+T ++ FS V L+LDEADRILD G+E+D+ L L P Q+VLLSAT+T + R
Sbjct: 296 KNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNALNAAGPDRQNVLLSATITEGLSR 355
Query: 245 LAGMTLQNPIQIDAADSTDI----------HNTTDSLVIPDSLKQHFIVTPPKLRLVALA 294
LA +++++P+ + ++ ++ +DS +P+ L+QH +V P KL LV LA
Sbjct: 356 LASISMKDPVSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLA 415
Query: 295 SFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 330
+FIL KC+ ++ K+++F+++ + ++ L +
Sbjct: 416 AFILAKCKF---EQRQKLIIFISSCEAVEFLLNLFT 448
Score = 43 (20.2 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 902 KEKSFKQRGNFSKKQMLSEFDSGLPQR 928
K++ FK RG + K+ F+ + +R
Sbjct: 577 KDERFKGRGKWDSKRSADAFEQEVRER 603
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 153/338 (45%), Positives = 212/338 (62%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNPDIP + +K V E +F ++ E G+HP + +N + ++ +T+VQ+
Sbjct: 73 SSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHEL-GLHPHLISTINTVLKMSSMTSVQKQ 131
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M KI R DG YA++++PTRELALQ
Sbjct: 132 SIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQ 191
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K T+ + FS
Sbjct: 192 SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFS 251
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
++ LV DEADRILD G+E+DI L + + + Q++LLSATLT V RLA ++L +P
Sbjct: 252 RLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDP 311
Query: 602 IQIDAAD-STDIHNTTDSLV---IP----DSLKQHFIVTPPKLRLVALASFILGKC---- 649
+ I D S D N D V P D L I K + + S + C
Sbjct: 312 VSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAF 371
Query: 650 --QNVNEDEESKMLVFMATQDMADYHTEL-LSTVLGEN 684
Q +E+ KM+VF ++ ++ ++H L L T+L +
Sbjct: 372 ILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSS 409
Score = 582 (209.9 bits), Expect = 3.1e-109, Sum P(2) = 3.1e-109
Identities = 131/290 (45%), Positives = 176/290 (60%)
Query: 617 DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676
DS IP+SLKQH V P KLRLV LA+FIL KC+ +E+ KM+VF ++ ++ ++H L
Sbjct: 344 DSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKF---EEDQKMVVFFSSCELVEFHYSL 400
Query: 677 -LSTVLGEN--------------IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAA 721
L T+L + + F +LHG M Q ERT VF+ F + GVL+CTDVAA
Sbjct: 401 FLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAA 460
Query: 722 RGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIR 781
RGLDLP V WIVQY APSS +Y+HR+GRTAR+G GSSLL L PSE + V L + +I
Sbjct: 461 RGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKIN 520
Query: 782 IEEIKLKDCL-----QNLLSVKMEGDLSRLADG--NVETAATALQMSFESAVLQQKILHT 834
+ EIK++D L + K G A G + AT LQ FE V + +
Sbjct: 521 VSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVS 580
Query: 835 SACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGI 884
A K S+++ YA+Y ++L+HIF+ + +HLGH AKSF LRDAP +S +
Sbjct: 581 WAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPRNLSAL 630
Score = 528 (190.9 bits), Expect = 3.1e-109, Sum P(2) = 3.1e-109
Identities = 103/178 (57%), Positives = 135/178 (75%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ ++ +T+VQ+ SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M KI R DG YA
Sbjct: 120 LKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYA 179
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++++PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+
Sbjct: 180 LVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLV 239
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH K T+ + FS++ LV DEADRILD G+E+DI L + + + Q++LLSATLT
Sbjct: 240 DHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLT 297
Score = 196 (74.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 56/158 (35%), Positives = 82/158 (51%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
K T+ + FS++ LV DEADRILD G+E+DI L + + + Q+VLLSATLT V R
Sbjct: 243 KSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTR 302
Query: 245 LAGMTLQNPIQIDAAD-STDIHNTTDSLV---IP----DSLKQHFIVTPPKLRLVALASF 296
LA ++L +P+ I D S D N D V P D L I K + + S
Sbjct: 303 LADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSK 362
Query: 297 ILGKC------QNVNEDEESKMLVFMATQDMADYHTEL 328
+ C Q +E+ KM+VF ++ ++ ++H L
Sbjct: 363 LRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSL 400
Score = 38 (18.4 bits), Expect = 6.2e-50, Sum P(2) = 6.2e-50
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
H K + K ++ +H + + G E DIA+ + +P + + S TP
Sbjct: 638 HVKRPDLHKKTQSKHSLAEILRSEYSSGMEADIAKVKKQNAPGEPGGRPLQHSLQPTPCF 697
Query: 591 QRLAGMTLQ 599
R G TL+
Sbjct: 698 GR--GKTLK 704
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 145/337 (43%), Positives = 210/337 (62%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNPDIP + + ++ V E +F S+ + +HP + + + I +T+VQ+
Sbjct: 68 SSLFRNNPDIPEIHRKAVQQVQENVFTTDSFSQLD-LHPHLIATITTVLKICSMTSVQKQ 126
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
+I +L G D LVRSQTGSGKTLAY IP++Q LQ M+ KI R DG YA++++PTRELALQ
Sbjct: 127 TIPVLLQGKDALVRSQTGSGKTLAYGIPLVQSLQGMQSKIQRSDGPYALVLVPTRELALQ 186
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
T + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K TE + F
Sbjct: 187 TFDTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTECIHFR 246
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
+ + L++DEADRILD G+E+D+ L L ++ Q++LLSATLT V RLA ++L +P
Sbjct: 247 RTQWLIIDEADRILDLGFEKDVTVILNALNAERETRQNVLLSATLTEGVTRLADISLNDP 306
Query: 602 IQIDAADSTD------IHNTTDSLVIPDSLKQHFIVTPPKLRL--------VALASFILG 647
I+I AD + ++ + + Q P KL+ + L +
Sbjct: 307 IRISIADEIRESLKPALQTEKEANSSSNRMDQENFAVPEKLKQYFMMVPSKLRLVTLAAF 366
Query: 648 KCQNVNEDEESKMLVFMATQDMADYHTELLSTVL-GE 683
+ +++ KM++F ++ + ++H ELL VL GE
Sbjct: 367 VLEKCKYEKQHKMIIFFSSCEQVEFHYELLVNVLSGE 403
Score = 575 (207.5 bits), Expect = 5.8e-109, Sum P(2) = 5.8e-109
Identities = 136/353 (38%), Positives = 203/353 (57%)
Query: 597 TLQNPIQIDA-ADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNED 655
+L+ +Q + A+S+ ++ +P+ LKQ+F++ P KLRLV LA+F+L KC+ +
Sbjct: 318 SLKPALQTEKEANSSSNRMDQENFAVPEKLKQYFMMVPSKLRLVTLAAFVLEKCKY---E 374
Query: 656 EESKMLVFMATQDMADYHTELLSTVL-GE--------------NIAFFKLHGSMSQSERT 700
++ KM++F ++ + ++H ELL VL GE + F +LHG+M Q ERT
Sbjct: 375 KQHKMIIFFSSCEQVEFHYELLVNVLSGELESEQPKRSSVSSVQLQFLRLHGNMEQEERT 434
Query: 701 EVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760
EVF+ F K+G+L+CTDVAARGLDLP V WIVQY AP+S +Y+HR+GRTAR+G G+S
Sbjct: 435 EVFQEFLKSKTGILLCTDVAARGLDLPQVTWIVQYNAPASPAEYIHRIGRTARIGCHGNS 494
Query: 761 LLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLS---VKMEGDLSRLADG----NVET 813
LL L PSE + V L + +I + EIK++ L +L+ ++ S+ + G V
Sbjct: 495 LLVLAPSEAEYVSLLASHKINVSEIKMEKVLSSLMKDDRFRLRRPGSKKSYGVDPQEVRE 554
Query: 814 AATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFA 873
AT LQ FE+ V + A K S++ Y +Y + L+HIF+ K IHLGH AKSF
Sbjct: 555 RATVLQTQFENYVHSSEGTIRWAKKALQSFLCAYTAYPRSLKHIFHIKSIHLGHVAKSFG 614
Query: 874 LRDAPSVISGIGXXXXXXXXXXXXMAINKEKSFKQRGNFSKKQML-SEFDSGL 925
LRDAP ++ + + K K G ++L SE+ SG+
Sbjct: 615 LRDAPQNLTTLPTANSKKKTKPRAKRSDLLK--KTHGKHRLAEILRSEYSSGM 665
Score = 533 (192.7 bits), Expect = 5.8e-109, Sum P(2) = 5.8e-109
Identities = 103/178 (57%), Positives = 134/178 (75%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ I +T+VQ+ +I +L G D LVRSQTGSGKTLAY IP++Q LQ M+ KI R DG YA
Sbjct: 115 LKICSMTSVQKQTIPVLLQGKDALVRSQTGSGKTLAYGIPLVQSLQGMQSKIQRSDGPYA 174
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++++PTRELALQT + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+
Sbjct: 175 LVLVPTRELALQTFDTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLV 234
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH K TE + F + + L++DEADRILD G+E+D+ L L ++ Q++LLSATLT
Sbjct: 235 DHIKSTECIHFRRTQWLIIDEADRILDLGFEKDVTVILNALNAERETRQNVLLSATLT 292
Score = 196 (74.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 49/159 (30%), Positives = 83/159 (52%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
K TE + F + + L++DEADRILD G+E+D+ L L ++ Q+VLLSATLT V R
Sbjct: 238 KSTECIHFRRTQWLIIDEADRILDLGFEKDVTVILNALNAERETRQNVLLSATLTEGVTR 297
Query: 245 LAGMTLQNPIQIDAADSTD------IHNTTDSLVIPDSLKQHFIVTPPKLRL-------- 290
LA ++L +PI+I AD + ++ + + Q P KL+
Sbjct: 298 LADISLNDPIRISIADEIRESLKPALQTEKEANSSSNRMDQENFAVPEKLKQYFMMVPSK 357
Query: 291 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELL 329
+ L + + +++ KM++F ++ + ++H ELL
Sbjct: 358 LRLVTLAAFVLEKCKYEKQHKMIIFFSSCEQVEFHYELL 396
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 150/353 (42%), Positives = 218/353 (61%)
Query: 355 EVKSGP-ISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNIT 413
E K G SSLF+NNP+IP +P +K V E +F +++ +HP + +N + ++
Sbjct: 96 ERKPGAKTSSLFKNNPEIPELPRPVVKQVQEKVFTSDAFQALD-LHPHLISTINTVLKMS 154
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473
+T+VQ+ SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M+ KI R DG YA+I++
Sbjct: 155 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMQSKIQRGDGPYALILV 214
Query: 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K
Sbjct: 215 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 274
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
T+ + F ++ L+LDEADRILD G+E+D+ L + + + Q++LLSATLT V RL
Sbjct: 275 STKNIHFRQIRWLILDEADRILDLGFEKDLTVILNAVNAECQERQNVLLSATLTEGVARL 334
Query: 594 AGMTLQNPIQIDAAD-STDIHNTTDSLVI----P---DSLKQHFIVTPPKLRLVALASFI 645
A ++L +P+ I D S D+ + + P D L I + +V + S +
Sbjct: 335 ADISLHDPVSISVLDESHDVSSPESEAFLEASPPQATDELDGFAIPAGLEQHVVVVPSKL 394
Query: 646 LGKC------QNVNEDEESKMLVFMATQDMADYH-TELLSTVLGENIAFFKLH 691
C Q + + K++VF ++ ++ ++H T L T+L + A H
Sbjct: 395 RLVCLAAFILQKCKFERDQKVIVFFSSCELVEFHYTLFLQTLLSGSGALAPEH 447
Score = 559 (201.8 bits), Expect = 1.7e-106, Sum P(2) = 1.7e-106
Identities = 131/331 (39%), Positives = 186/331 (56%)
Query: 617 DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYH-TE 675
D IP L+QH +V P KLRLV LA+FIL KC+ + + K++VF ++ ++ ++H T
Sbjct: 375 DGFAIPAGLEQHVVVVPSKLRLVCLAAFILQKCKF---ERDQKVIVFFSSCELVEFHYTL 431
Query: 676 LLSTVLGEN--------------IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAA 721
L T+L + + F +LH ++ Q ERT VF+ F K+G+L CTD+AA
Sbjct: 432 FLQTLLSGSGALAPEHLPSTSTPLKFLRLHSALEQEERTAVFQDFTHSKTGILFCTDIAA 491
Query: 722 RGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIR 781
RGLDLP V WIVQY APSS +Y+HR+GRTAR+G GSSLL L PSE + V L + +I
Sbjct: 492 RGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLVLAPSEAEYVNSLASHKIN 551
Query: 782 IEEIKLKDCLQNL-----LSVKMEGDLSRLADG--NVETAATALQMSFESAVLQQKILHT 834
+ E+K++D L L + G A G + AT LQ FE V + +
Sbjct: 552 VSEVKMEDILSVLTKDDCFKGRRGGSQKSRAAGPQEIRERATVLQTLFEDYVHSSEETVS 611
Query: 835 SACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGXXXXXXXXX 894
A K S++R YA+Y ++L+HIF+ + +HLGH AKSF LRDAP +
Sbjct: 612 GAKKALQSFIRAYATYPRELKHIFHIRLLHLGHMAKSFGLRDAPKNLCASAMKKKKANLK 671
Query: 895 XXXMAINKEKSFKQRGNFSKKQMLSEFDSGL 925
+ K +S KQR + + SE+ SG+
Sbjct: 672 RPDLQRKKTQS-KQR---LAEILRSEYASGM 698
Score = 527 (190.6 bits), Expect = 1.7e-106, Sum P(2) = 1.7e-106
Identities = 107/203 (52%), Positives = 144/203 (70%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ ++ +T+VQ+ SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M+ KI R DG YA
Sbjct: 151 LKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMQSKIQRGDGPYA 210
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I++PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+
Sbjct: 211 LILVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLV 270
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
DH K T+ + F ++ L+LDEADRILD G+E+D+ L + + + Q++LLSATLT
Sbjct: 271 DHIKSTKNIHFRQIRWLILDEADRILDLGFEKDLTVILNAVNAECQERQNVLLSATLTEG 330
Query: 181 TCWCKHTETLKFSKVEHLVLDEA 203
+ + V VLDE+
Sbjct: 331 VA--RLADISLHDPVSISVLDES 351
Score = 179 (68.1 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 51/162 (31%), Positives = 84/162 (51%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
K T+ + F ++ L+LDEADRILD G+E+D+ L + + + Q+VLLSATLT V R
Sbjct: 274 KSTKNIHFRQIRWLILDEADRILDLGFEKDLTVILNAVNAECQERQNVLLSATLTEGVAR 333
Query: 245 LAGMTLQNPIQIDAAD-STDIHNTTDSLVI----P---DSLKQHFIVTPPKLRLVALASF 296
LA ++L +P+ I D S D+ + + P D L I + +V + S
Sbjct: 334 LADISLHDPVSISVLDESHDVSSPESEAFLEASPPQATDELDGFAIPAGLEQHVVVVPSK 393
Query: 297 ILGKC------QNVNEDEESKMLVFMATQDMADYH-TELLST 331
+ C Q + + K++VF ++ ++ ++H T L T
Sbjct: 394 LRLVCLAAFILQKCKFERDQKVIVFFSSCELVEFHYTLFLQT 435
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 691 (248.3 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 153/338 (45%), Positives = 212/338 (62%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNPDIP + +K V E +F ++ E G+HP + +N + ++ +T+VQ+
Sbjct: 202 SSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHEL-GLHPHLISTINTVLKMSSMTSVQKQ 260
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M KI R DG YA++++PTRELALQ
Sbjct: 261 SIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQ 320
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K T+ + FS
Sbjct: 321 SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFS 380
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
++ LV DEADRILD G+E+DI L + + + Q++LLSATLT V RLA ++L +P
Sbjct: 381 RLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDP 440
Query: 602 IQIDAAD-STDIHNTTDSLV---IP----DSLKQHFIVTPPKLRLVALASFILGKC---- 649
+ I D S D N D V P D L I K + + S + C
Sbjct: 441 VSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAF 500
Query: 650 --QNVNEDEESKMLVFMATQDMADYHTEL-LSTVLGEN 684
Q +E+ KM+VF ++ ++ ++H L L T+L +
Sbjct: 501 ILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSS 538
Score = 582 (209.9 bits), Expect = 1.2e-105, Sum P(2) = 1.2e-105
Identities = 131/290 (45%), Positives = 176/290 (60%)
Query: 617 DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676
DS IP+SLKQH V P KLRLV LA+FIL KC+ +E+ KM+VF ++ ++ ++H L
Sbjct: 473 DSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKF---EEDQKMVVFFSSCELVEFHYSL 529
Query: 677 -LSTVLGEN--------------IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAA 721
L T+L + + F +LHG M Q ERT VF+ F + GVL+CTDVAA
Sbjct: 530 FLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAA 589
Query: 722 RGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIR 781
RGLDLP V WIVQY APSS +Y+HR+GRTAR+G GSSLL L PSE + V L + +I
Sbjct: 590 RGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKIN 649
Query: 782 IEEIKLKDCL-----QNLLSVKMEGDLSRLADG--NVETAATALQMSFESAVLQQKILHT 834
+ EIK++D L + K G A G + AT LQ FE V + +
Sbjct: 650 VSEIKMEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVS 709
Query: 835 SACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGI 884
A K S+++ YA+Y ++L+HIF+ + +HLGH AKSF LRDAP +S +
Sbjct: 710 WAKKALQSFIQAYATYPRELKHIFHVRSLHLGHVAKSFGLRDAPRNLSAL 759
Score = 528 (190.9 bits), Expect = 1.2e-105, Sum P(2) = 1.2e-105
Identities = 103/178 (57%), Positives = 135/178 (75%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ ++ +T+VQ+ SI +L+G D LVRSQTGSGKTLAY IP++Q LQ M KI R DG YA
Sbjct: 249 LKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYA 308
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++++PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+
Sbjct: 309 LVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLV 368
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH K T+ + FS++ LV DEADRILD G+E+DI L + + + Q++LLSATLT
Sbjct: 369 DHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLT 426
Score = 196 (74.1 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 56/158 (35%), Positives = 82/158 (51%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
K T+ + FS++ LV DEADRILD G+E+DI L + + + Q+VLLSATLT V R
Sbjct: 372 KSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTR 431
Query: 245 LAGMTLQNPIQIDAAD-STDIHNTTDSLV---IP----DSLKQHFIVTPPKLRLVALASF 296
LA ++L +P+ I D S D N D V P D L I K + + S
Sbjct: 432 LADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSK 491
Query: 297 ILGKC------QNVNEDEESKMLVFMATQDMADYHTEL 328
+ C Q +E+ KM+VF ++ ++ ++H L
Sbjct: 492 LRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSL 529
Score = 48 (22.0 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 103 ARIRKGI-SILVATPGRLLDHCKHTETL 129
+R+ +G+ V PG LL H T+T+
Sbjct: 79 SRVPRGVPGPAVCAPGSLLHHASPTQTM 106
Score = 48 (22.0 bits), Expect = 4.7e-55, Sum P(2) = 4.7e-55
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 512 ARIRKGI-SILVATPGRLLDHCKHTETL 538
+R+ +G+ V PG LL H T+T+
Sbjct: 79 SRVPRGVPGPAVCAPGSLLHHASPTQTM 106
Score = 38 (18.4 bits), Expect = 3.0e-47, Sum P(2) = 3.0e-47
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
H K + K ++ +H + + G E DIA+ + +P + + S TP
Sbjct: 767 HVKRPDLHKKTQSKHSLAEILRSEYSSGMEADIAKVKKQNAPGEPGGRPLQHSLQPTPCF 826
Query: 591 QRLAGMTLQ 599
R G TL+
Sbjct: 827 GR--GKTLK 833
>RGD|1304895 [details] [associations]
symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304895
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000075041
EMBL:CH474001 UniGene:Rn.63648 Ensembl:ENSRNOT00000064323
Uniprot:G3V9V8
Length = 682
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 159/329 (48%), Positives = 226/329 (68%)
Query: 362 SSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQL 421
SSLF+NNP+IP + +K E +F+P +++E +HP + +N + ++ +T+VQ+
Sbjct: 75 SSLFKNNPEIPELHRTVVKQAREQVFSPEAFQELD-LHPHLISTINTVLKMSSMTSVQKQ 133
Query: 422 SIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQ 481
SI +L+G D LVRSQTGSGKTLAY IP++Q LQ + KI R DG YA++++PTRELALQ
Sbjct: 134 SIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQALTSKIQRSDGPYALVLVPTRELALQ 193
Query: 482 TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFS 541
+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+DH K T+ + F+
Sbjct: 194 SFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFN 253
Query: 542 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP 601
+V LV+DEADRILD G+E+D+ L + + + Q++LLSATLT V RLA ++L NP
Sbjct: 254 RVRWLVVDEADRILDLGFEKDVTVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHNP 313
Query: 602 IQIDAAD-STDIHNTT-------DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 653
+ I D S D N DS IP+SL Q+ ++ P KLRLV LA+FIL KC+
Sbjct: 314 VSISVLDKSWDQPNPKEVASIQLDSFAIPESLDQYVVLVPSKLRLVCLAAFILKKCKF-- 371
Query: 654 EDEESKMLVFMATQDMADYHTEL-LSTVL 681
+++ KM+VF ++ ++ ++H L L T+L
Sbjct: 372 -EKDQKMIVFFSSCELVEFHYNLFLHTLL 399
Score = 552 (199.4 bits), Expect = 2.1e-105, Sum P(2) = 2.1e-105
Identities = 125/284 (44%), Positives = 173/284 (60%)
Query: 617 DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676
DS IP+SL Q+ ++ P KLRLV LA+FIL KC+ +++ KM+VF ++ ++ ++H L
Sbjct: 337 DSFAIPESLDQYVVLVPSKLRLVCLAAFILKKCKF---EKDQKMIVFFSSCELVEFHYNL 393
Query: 677 -LSTVLGEN--------------IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAA 721
L T+L + + F +LHG+M Q ERT VF F +GVL+CTDVA+
Sbjct: 394 FLHTLLCHSGTPASETLPSASWPLKFLRLHGNMKQEERTSVFHEFSHSGTGVLLCTDVAS 453
Query: 722 RGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIR 781
RGLDLP V WIVQY+APS+ +Y+HR+GRTAR+G GSSLL L PSE + V L + +I
Sbjct: 454 RGLDLPQVTWIVQYSAPSAPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKIN 513
Query: 782 IEEIKLKDCLQNL-----LSVKMEGDLSRLADG--NVETAATALQMSFESAVLQQKILHT 834
+ EIKL+ L L + G A G + AT LQ FE V + + +
Sbjct: 514 VSEIKLEGILAVLAKDDCFKRRQRGAQRSHATGPQEIRERATVLQTVFEDYVHSSQRMVS 573
Query: 835 SACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAP 878
A K S++R YA+Y K+L+ IF+ + +HLGH AKSF LRDAP
Sbjct: 574 WAKKALQSFIRAYATYPKELKSIFHVRSLHLGHVAKSFGLRDAP 617
Score = 524 (189.5 bits), Expect = 2.1e-105, Sum P(2) = 2.1e-105
Identities = 101/178 (56%), Positives = 136/178 (76%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ ++ +T+VQ+ SI +L+G D LVRSQTGSGKTLAY IP++Q LQ + KI R DG YA
Sbjct: 122 LKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQALTSKIQRSDGPYA 181
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++++PTRELALQ+ + KL K FTWIVP L GGEK KSEKAR+RKGI+IL++TPGRL+
Sbjct: 182 LVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLV 241
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH K T+ + F++V LV+DEADRILD G+E+D+ L + + + Q++LLSATLT
Sbjct: 242 DHIKSTKNIHFNRVRWLVVDEADRILDLGFEKDVTVILNAVNAECQKRQNVLLSATLT 299
Score = 286 (105.7 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 65/152 (42%), Positives = 96/152 (63%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
K T+ + F++V LV+DEADRILD G+E+D+ L + + + Q+VLLSATLT V R
Sbjct: 245 KSTKNIHFNRVRWLVVDEADRILDLGFEKDVTVILNAVNAECQKRQNVLLSATLTEGVTR 304
Query: 245 LAGMTLQNPIQIDAAD-STDIHNTT-------DSLVIPDSLKQHFIVTPPKLRLVALASF 296
LA ++L NP+ I D S D N DS IP+SL Q+ ++ P KLRLV LA+F
Sbjct: 305 LADISLHNPVSISVLDKSWDQPNPKEVASIQLDSFAIPESLDQYVVLVPSKLRLVCLAAF 364
Query: 297 ILGKCQNVNEDEESKMLVFMATQDMADYHTEL 328
IL KC+ +++ KM+VF ++ ++ ++H L
Sbjct: 365 ILKKCKF---EKDQKMIVFFSSCELVEFHYNL 393
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 535 (193.4 bits), Expect = 1.4e-89, Sum P(2) = 1.4e-89
Identities = 119/265 (44%), Positives = 166/265 (62%)
Query: 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463
+NL M + T +Q+ SI PIL G D LV++QTGSGKTL+Y IP++QKL E R ++R
Sbjct: 220 RNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQR--VTR 277
Query: 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
DG Y VII PTREL+ Q E KL K F WIVP + GGE +EKARIRKGI+ILVA
Sbjct: 278 SDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVA 337
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL--KKQKPQF--QS 579
TPGRLLDH ++T++ ++ +LDEAD++LD G+E+D+ + +L KK+ +F Q+
Sbjct: 338 TPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTTIINLLDSKKRTMKFKRQN 397
Query: 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHN--------TTDSLVIPDSLKQHFIV 631
IL+SATL+ + RLA ++L +P+ I DS + + L P L Q ++
Sbjct: 398 ILVSATLSEGISRLASLSLTSPVYI-GLDSKVLEKGENPFQAAEKEMLQAPKQLDQFYVE 456
Query: 632 TPPKLRLVALASFILGKCQNVNEDE 656
K RL +L +FI K N+ D+
Sbjct: 457 VESKERLTSLIAFIRWKTSNITIDK 481
Score = 482 (174.7 bits), Expect = 2.0e-83, Sum P(2) = 2.0e-83
Identities = 117/274 (42%), Positives = 167/274 (60%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ SI PIL G D LV++QTGSGKTL+Y IP++QKL E R ++R DG Y VII PT
Sbjct: 232 THIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQKLTEQR--VTRSDGCYCVIITPT 289
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
REL+ Q E KL K F WIVP + GGE +EKARIRKGI+ILVATPGRLLDH ++T
Sbjct: 290 RELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNT 349
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL--KKQKPQF--QSILLSATLTPATC 182
++ ++ +LDEAD++LD G+E+D+ + +L KK+ +F Q+IL+SATL+
Sbjct: 350 QSFPTDNIKWCILDEADKLLDLGFEKDVTTIINLLDSKKRTMKFKRQNILVSATLSEGI- 408
Query: 183 WCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK--KQKPQFQ-SVLLSATLT 239
+L + ++ LD ++L++G A E+L+ KQ QF V LT
Sbjct: 409 --SRLASLSLTSPVYIGLDS--KVLEKGENPFQAAEKEMLQAPKQLDQFYVEVESKERLT 464
Query: 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVI 273
+ + T + I ID D +++ +S +I
Sbjct: 465 SLIAFIRWKT--SNITIDKGDVASGNSSANSKMI 496
Score = 435 (158.2 bits), Expect = 1.4e-89, Sum P(2) = 1.4e-89
Identities = 97/277 (35%), Positives = 164/277 (59%)
Query: 653 NEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712
+E++E + + AT + +Y + ++V ++ FKLHG + Q RT+ F F++ +G
Sbjct: 577 DEEKEIEKQIKEATSN-PNYRVK--TSVF--SVPIFKLHGELDQQTRTKTFFDFKNSPNG 631
Query: 713 VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLV 772
+L+ TDV+ARGLDLP V+WIVQY S + DY+HR+GRTAR+G++G SLLFL+PSE K +
Sbjct: 632 ILLTTDVSARGLDLPSVNWIVQYDPCSDTKDYIHRIGRTARLGNQGCSLLFLLPSEKKYI 691
Query: 773 EELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGN-VETAATALQMSFESAVL-QQK 830
+ L + ++E+K+ LQ+L +G L + + + +E+ LQ+ FE ++ K
Sbjct: 692 DHLAKFNVSVKEMKVTTILQSLFYTS-DGQLKKTSKSSQLESQVHDLQLLFERFLIYDSK 750
Query: 831 ILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGXXXXX 890
+ C Y S++R YA++ D++ IF+ +HLGH +KSFALR+ P+ ++ +
Sbjct: 751 AKEMARC-AYQSFLRSYATHKADVKSIFHISYLHLGHVSKSFALRETPTELNKMSAGIKG 809
Query: 891 XXXXXXXMAINKEKSFKQRGNFSKK--QMLSEFDSGL 925
+++ KQ +F K + ++EF GL
Sbjct: 810 AKAAKKG---DEDTLQKQTADFKMKNYKSVNEFSDGL 843
Score = 194 (73.4 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 71/271 (26%), Positives = 125/271 (46%)
Query: 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 141
K+ ++++P +K+ ++ G ++ TP R L + E K K + ++
Sbjct: 258 KTLSYLIPVV----QKLTEQRVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPG 313
Query: 142 ADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVLD 201
+ G E AE I K +L AT ++T++ ++ +LD
Sbjct: 314 ----IIMGGENRSAEKARIRKGIN------ILVATPGRLLDHLQNTQSFPTDNIKWCILD 363
Query: 202 EADRILDQGYERDIAEFLEIL--KKQKPQF--QSVLLSATLTPAVQRLAGMTLQNPIQID 257
EAD++LD G+E+D+ + +L KK+ +F Q++L+SATL+ + RLA ++L +P+ I
Sbjct: 364 EADKLLDLGFEKDVTTIINLLDSKKRTMKFKRQNILVSATLSEGISRLASLSLTSPVYI- 422
Query: 258 AADSTDIHN--------TTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV----- 304
DS + + L P L Q ++ K RL +L +FI K N+
Sbjct: 423 GLDSKVLEKGENPFQAAEKEMLQAPKQLDQFYVEVESKERLTSLIAFIRWKTSNITIDKG 482
Query: 305 -----NEDEESKMLVFMATQDMADYHTELLS 330
N SKM+VF ++ D D+H + S
Sbjct: 483 DVASGNSSANSKMIVFFSSCDSVDFHHYMFS 513
Score = 80 (33.2 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 617 DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV----------NEDEESKMLVFMAT 666
+ L P L Q ++ K RL +L +FI K N+ N SKM+VF ++
Sbjct: 442 EMLQAPKQLDQFYVEVESKERLTSLIAFIRWKTSNITIDKGDVASGNSSANSKMIVFFSS 501
Query: 667 QDMADYHTELLSTV 680
D D+H + S +
Sbjct: 502 CDSVDFHHYMFSNM 515
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 466 (169.1 bits), Expect = 4.8e-88, Sum P(2) = 4.8e-88
Identities = 108/261 (41%), Positives = 151/261 (57%)
Query: 386 LFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLA 445
LFA S+ G+ + L E M T VQ +I IL G DVLV + TG+GKT+A
Sbjct: 25 LFASCSFSSL-GLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIA 83
Query: 446 YAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE 505
Y P+I LQ PK+ R G +A++I+PTREL LQ E KL F WIVP ++ GGE
Sbjct: 84 YLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGE 143
Query: 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565
K EKAR+RKGISIL+ATPGRLLDH K+T + + ++ DEAD IL+ GY ++I +
Sbjct: 144 KKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQ 203
Query: 566 FLEILKKQK----------P---QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDI 612
+++L + P Q Q++LLSATL V LA ++L +P+ I D+T +
Sbjct: 204 IIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMI-GLDNTKL 262
Query: 613 HN--TTDSLVIPDSLKQHFIV 631
+ +S PDS + ++
Sbjct: 263 QQNLSIESPAAPDSDAEDMVI 283
Score = 450 (163.5 bits), Expect = 4.8e-88, Sum P(2) = 4.8e-88
Identities = 111/280 (39%), Positives = 159/280 (56%)
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEES-KMLVFMATQDMADYHTELLST 679
IP L Q ++ P RLVAL S + +N+ E E S K++VF +T+D D+H LLS
Sbjct: 298 IPSQLVQRYLRVPCGARLVALLSVL----KNLFEREASQKVVVFFSTRDAVDFHYSLLSE 353
Query: 680 VL----------GENIAF-----FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGL 724
G F F+LHGSM Q +R F TF++ K VL+ TDVAARGL
Sbjct: 354 FQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGL 413
Query: 725 DLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEE 784
D P V I+QY P +T+YVHRVGRTAR+G +G +LLFL P E+ ++EL+ + E
Sbjct: 414 DFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKKHGASLTE 473
Query: 785 IKLKDCLQNLLSVKMEGDLSRLADG-NVETA--ATALQMSFESAVLQQKILHTSACKGYT 841
L L + G++ R+ ++E+ +LQ + ES + + + A +
Sbjct: 474 YPLMKVLDKF---PIPGNMPRIKKVLSLESHPWVISLQRALESLTYAEPKMKSLAKNAFV 530
Query: 842 SWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVI 881
SWVR YA++ +L+ IF K++HLGH AKSFALR+ PS++
Sbjct: 531 SWVRGYAAHKGELKSIFVVKKLHLGHVAKSFALREQPSLV 570
Score = 405 (147.6 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 80/161 (49%), Positives = 106/161 (65%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T VQ +I IL G DVLV + TG+GKT+AY P+I LQ PK+ R G +A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++I+PTREL LQ E KL F WIVP ++ GGEK EKAR+RKGISIL+ATPGRLL
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLL 167
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 161
DH K+T + + ++ DEAD IL+ GY ++I + +++L
Sbjct: 168 DHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLL 208
Score = 107 (42.7 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
Identities = 33/114 (28%), Positives = 59/114 (51%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK----------P---QFQS 231
K+T + + ++ DEAD IL+ GY ++I + +++L + P Q Q+
Sbjct: 171 KNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQN 230
Query: 232 VLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHN--TTDSLVIPDSLKQHFIV 283
+LLSATL V LA ++L +P+ I D+T + + +S PDS + ++
Sbjct: 231 LLLSATLNDKVNDLAKLSLDDPVMI-GLDNTKLQQNLSIESPAAPDSDAEDMVI 283
Score = 94 (38.1 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 273 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEES-KMLVFMATQDMADYHTELLS 330
IP L Q ++ P RLVAL S + +N+ E E S K++VF +T+D D+H LLS
Sbjct: 298 IPSQLVQRYLRVPCGARLVALLSVL----KNLFEREASQKVVVFFSTRDAVDFHYSLLS 352
>POMBASE|SPBC21H7.04 [details] [associations]
symbol:dbp7 "ATP-dependent RNA helicase Dbp7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC21H7.04
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
HOGENOM:HOG000268799 OrthoDB:EOG4W6S47 PIR:T39930
RefSeq:NP_595929.1 ProteinModelPortal:O60173 STRING:O60173
EnsemblFungi:SPBC21H7.04.1 GeneID:2540518 KEGG:spo:SPBC21H7.04
NextBio:20801645 Uniprot:O60173
Length = 709
Score = 492 (178.3 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 124/330 (37%), Positives = 184/330 (55%)
Query: 366 QNNPD--IPNVPTRRLKPVSEALFAPTSYEEFPGIH--PFMKKNLNEGMNITQVTTVQQL 421
QN D I N+ T + EA AP F G+ + +LN MNI+ T +Q
Sbjct: 114 QNLEDNQISNIGTTK-----EASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSC 168
Query: 422 SIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDGIYAVIILPTREL 478
+ +L D D + +QTGSGKTLAY +PI+Q+L + + +R GIYAVI+ PTREL
Sbjct: 169 CLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTREL 228
Query: 479 ALQTLEIFTKLCKS--FTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE 536
Q + KL + WIV + GGEK KSEKARIRKG++IL+ TPGRL DH ++TE
Sbjct: 229 CQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTE 288
Query: 537 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK---------PQFQ-SILLSATL 586
L S+V +VLDE DR++D G+E + + L L+ Q P + ++L SAT+
Sbjct: 289 ALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATM 348
Query: 587 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV-IPDSLKQHFIVTPPKLRLVALASFI 645
V+RL+ L++ + + S+ + T D P+ L Q ++V PPKLRLV+L + +
Sbjct: 349 KDTVKRLSDSALKDALYLK---SSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALL 405
Query: 646 LGKCQNVNEDEESKMLVFMATQDMADYHTE 675
++ K+++F++ D D+H E
Sbjct: 406 RSHVRSYK-----KIIIFLSCSDSVDFHFE 430
Score = 401 (146.2 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 86/199 (43%), Positives = 124/199 (62%)
Query: 688 FKLHGSMSQSERTEVFKTFRSVK-SG--VLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
++LHGS+SQ RT F S + SG +L+CTDVAARGLDLP VD +VQY AP S+ DY
Sbjct: 471 YRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDY 530
Query: 745 VHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLS 804
+HR+GRTAR GH G++++FL+P E + + L++ + ++ + LLS +
Sbjct: 531 LHRIGRTARAGHNGAAIMFLLPKESEYINLLKSS-VSANILEQPNGPSGLLSAGFSQGKT 589
Query: 805 RLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIH 864
D + AT Q+ E +L+ + + A + +TS+VR YA++ R IFN + +H
Sbjct: 590 NTNDW--QDRATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLH 647
Query: 865 LGHFAKSFALRDAPSVISG 883
LGH AKSFALR+AP ISG
Sbjct: 648 LGHIAKSFALREAPGKISG 666
Score = 392 (143.0 bits), Expect = 2.0e-70, Sum P(2) = 2.0e-70
Identities = 102/277 (36%), Positives = 147/277 (53%)
Query: 1 MNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI-SRKDG 57
MNI+ T +Q + +L D D + +QTGSGKTLAY +PI+Q+L + + +R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 58 IYAVIILPTRELALQTLEIFTKLCKS--FTWIVPSWLTGGEKMKSEKARIRKGISILVAT 115
IYAVI+ PTREL Q + KL + WIV + GGEK KSEKARIRKG++IL+ T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 116 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175
PGRL DH ++TE L S+V +VLDE DR++D G+E + + L L+ Q + L S
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDL-SI 335
Query: 176 TLTPATCWCKHTETLKFSKVEHLVLDEA----DRILDQ---GYERDIAEFLEILKKQKPQ 228
T C T ++ L +A I+++ GY + + L+ P+
Sbjct: 336 PSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYVVVPPK 395
Query: 229 FQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIH 265
+ V L A L V+ + I + +DS D H
Sbjct: 396 LRLVSLVALLRSHVRSYKKII----IFLSCSDSVDFH 428
Score = 184 (69.8 bits), Expect = 1.6e-48, Sum P(2) = 1.6e-48
Identities = 47/154 (30%), Positives = 83/154 (53%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK---------PQFQ-SVLL 234
++TE L S+V +VLDE DR++D G+E + + L L+ Q P + ++L
Sbjct: 285 ENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLC 344
Query: 235 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV-IPDSLKQHFIVTPPKLRLVAL 293
SAT+ V+RL+ L++ + + S+ + T D P+ L Q ++V PPKLRLV+L
Sbjct: 345 SATMKDTVKRLSDSALKDALYLK---SSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSL 401
Query: 294 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 327
+ + ++ K+++F++ D D+H E
Sbjct: 402 VALLRSHVRSYK-----KIIIFLSCSDSVDFHFE 430
>ASPGD|ASPL0000056064 [details] [associations]
symbol:AN0204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AACD01000005
InterPro:IPR025313 Pfam:PF13959 KO:K14806 RefSeq:XP_657808.1
ProteinModelPortal:Q5BGX6 STRING:Q5BGX6
EnsemblFungi:CADANIAT00002528 GeneID:2875981 KEGG:ani:AN0204.2
HOGENOM:HOG000268799 OMA:RAYATHI OrthoDB:EOG4W6S47 Uniprot:Q5BGX6
Length = 778
Score = 461 (167.3 bits), Expect = 9.3e-72, Sum P(2) = 9.3e-72
Identities = 117/339 (34%), Positives = 186/339 (54%)
Query: 375 PTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPIL-DGGDVL 433
P KP + L G+ P + +L + + T +Q+ SI +L + D
Sbjct: 135 PMEDAKPTNAPLIDGLDTFTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETDAF 194
Query: 434 VRSQTGSGKTLAYAIPIIQKLQEM-RPK----------ISRKDGIYAVIILPTRELALQT 482
++++TGSGKTLAY +P++Q++ + R K + R G++A+I+ PTREL Q
Sbjct: 195 IQAETGSGKTLAYLLPLVQRIMALSRAKNEGDAKGDTSVHRDSGLFAIILAPTRELCKQI 254
Query: 483 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSK 542
+ L + WIV + GGEK KSEKAR+RKG++ILVATPGRL DH ++T+ L S
Sbjct: 255 SVVLEGLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTQALDVSN 314
Query: 543 VEHLVLDEADRILDQGYERDIAEFLEILK-KQKP--------QFQSILLSATLTPAVQRL 593
V LVLDE DR+++ G+E+++ E + L +Q+P + +IL SATL VQ+L
Sbjct: 315 VRWLVLDEGDRLMELGFEKELQEIISKLDARQRPSRIPGVPAKRATILCSATLKMNVQKL 374
Query: 594 AGMTLQNPIQI--DAADSTDIHNTT-----DSLVIPDSLKQHFIVTPPKLRLVALASFIL 646
++L++ + I D AD D T D+ +P LKQ + + KLRLV L +F+
Sbjct: 375 GEISLKDAVHIKADPADE-DGEKTAEDKDGDAFRVPAQLKQSYAIVAAKLRLVTLTAFM- 432
Query: 647 GKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685
K + + K ++F++ D ++H E+ + L E +
Sbjct: 433 -KRTFMRKGSVMKAIIFVSCADSVNFHFEVFTRKLAEQL 470
Score = 368 (134.6 bits), Expect = 4.0e-61, Sum P(2) = 4.0e-61
Identities = 98/286 (34%), Positives = 152/286 (53%)
Query: 7 TTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEM-RPK----------ISR 54
T +Q+ SI +L + D ++++TGSGKTLAY +P++Q++ + R K + R
Sbjct: 176 TAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPLVQRIMALSRAKNEGDAKGDTSVHR 235
Query: 55 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 114
G++A+I+ PTREL Q + L + WIV + GGEK KSEKAR+RKG++ILVA
Sbjct: 236 DSGLFAIILAPTRELCKQISVVLEGLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVA 295
Query: 115 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK-KQKPQFQSILL 173
TPGRL DH ++T+ L S V LVLDE DR+++ G+E+++ E + L +Q+P S +
Sbjct: 296 TPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFEKELQEIISKLDARQRP---SRIP 352
Query: 174 SATLTPATCWCKHTETLKFSKVE--------HLVLDEADRILDQGYERDIAEFLEILKKQ 225
AT C T + K+ H+ D AD ++ E + + +
Sbjct: 353 GVPAKRATILCSATLKMNVQKLGEISLKDAVHIKADPADEDGEKTAEDKDGDAFRVPAQL 412
Query: 226 KPQFQSV---LLSATLTPAVQRL---AGMTLQNPIQIDAADSTDIH 265
K + V L TLT ++R G ++ I + ADS + H
Sbjct: 413 KQSYAIVAAKLRLVTLTAFMKRTFMRKGSVMKAIIFVSCADSVNFH 458
Score = 342 (125.4 bits), Expect = 9.3e-72, Sum P(2) = 9.3e-72
Identities = 83/200 (41%), Positives = 116/200 (58%)
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKS-GVLICTDVAARGLDLPLVDWIVQYTAPSSSTD 743
+ +KLHGS+ Q RT +F + VLICTDVA+RGLDLP VD +V+Y S+ +
Sbjct: 514 VTMYKLHGSLPQHVRTSTLSSFAKNRDPSVLICTDVASRGLDLPNVDLVVEYDPAFSADE 573
Query: 744 YVHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGD 802
++HR+GRTAR+G +G +L+FL+P E VE L+ R R D + L +
Sbjct: 574 HLHRIGRTARLGRDGRALVFLLPGCEENYVEILK-RGYR-------DGGKALTRSTTDDI 625
Query: 803 LSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQ 862
L R GN+E+ L++ E L A + Y S +R YA++ + RHIFN K+
Sbjct: 626 LKRGFGGNIESQKWQLEL--ERWALDNPEYLEMARRAYQSHIRAYATHVANERHIFNIKE 683
Query: 863 IHLGHFAKSFALRDAPSVIS 882
+HLGH AKSFALRD P I+
Sbjct: 684 LHLGHLAKSFALRDRPGKIN 703
Score = 177 (67.4 bits), Expect = 7.2e-41, Sum P(2) = 7.2e-41
Identities = 50/162 (30%), Positives = 88/162 (54%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK-KQKP--------QFQSVLLS 235
++T+ L S V LVLDE DR+++ G+E+++ E + L +Q+P + ++L S
Sbjct: 305 ENTQALDVSNVRWLVLDEGDRLMELGFEKELQEIISKLDARQRPSRIPGVPAKRATILCS 364
Query: 236 ATLTPAVQRLAGMTLQNPIQI--DAADSTDIHNTT-----DSLVIPDSLKQHFIVTPPKL 288
ATL VQ+L ++L++ + I D AD D T D+ +P LKQ + + KL
Sbjct: 365 ATLKMNVQKLGEISLKDAVHIKADPADE-DGEKTAEDKDGDAFRVPAQLKQSYAIVAAKL 423
Query: 289 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 330
RLV L +F+ K + + K ++F++ D ++H E+ +
Sbjct: 424 RLVTLTAFM--KRTFMRKGSVMKAIIFVSCADSVNFHFEVFT 463
Score = 130 (50.8 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
Identities = 46/181 (25%), Positives = 78/181 (43%)
Query: 351 PKKTEVKSGPISSLFQNNP--------DIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFM 402
PKK + S +SSLF NP D + P KP + L G+ P +
Sbjct: 104 PKKGQGGS-VVSSLFSKNPRPRNAVEEDKNDEPMEDAKPTNAPLIDGLDTFTNLGLSPTL 162
Query: 403 KKNLNEGMNITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI 461
+L + + T +Q+ SI +L + D ++++TGSGKTLAY +P++Q++ +
Sbjct: 163 AAHLLTKLELKAPTAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPLVQRIMALSRAK 222
Query: 462 SRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPS------WLTGGEKMKSEKARIR 515
+ D + L L +LCK + ++ W+ G + EK +
Sbjct: 223 NEGDAKGDTSVHRDSGLFAIILAPTRELCKQISVVLEGLLRCAHWIVAGTVIGGEKKKSE 282
Query: 516 K 516
K
Sbjct: 283 K 283
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 413 (150.4 bits), Expect = 2.2e-69, Sum P(2) = 2.2e-69
Identities = 94/236 (39%), Positives = 146/236 (61%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
M +T +Q SIQP+L+G DVL ++TGSGKTLA+ IP ++ L + + S ++G
Sbjct: 107 MGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELL--FKERFSPRNGTGV 164
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
++I PTRELA+QT + +L K + V S + GG +SE RI G ++++ATPGRLL
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTV-SMVIGGNNRRSEAQRIASGSNLVIATPGRLL 223
Query: 530 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 589
DH ++T+ + ++ LV+DEADRIL++ +E D+ + L+IL K + Q+ L SAT T
Sbjct: 224 DHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTR---QTALFSATQTSK 280
Query: 590 VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 645
V+ LA ++L +P+ +D D T+ + L+Q + V P K RL+ L SF+
Sbjct: 281 VKDLARVSLTSPVHVDVDDGR--RKVTN-----EGLEQGYCVVPSKQRLILLISFL 329
Score = 358 (131.1 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 82/214 (38%), Positives = 131/214 (61%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M +T +Q SIQP+L+G DVL ++TGSGKTLA+ IP ++ L + + S ++G
Sbjct: 107 MGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELL--FKERFSPRNGTGV 164
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++I PTRELA+QT + +L K + V S + GG +SE RI G ++++ATPGRLL
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTV-SMVIGGNNRRSEAQRIASGSNLVIATPGRLL 223
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
DH ++T+ + ++ LV+DEADRIL++ +E D+ + L+IL K + Q+ L SAT T
Sbjct: 224 DHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTR---QTALFSATQTSK 280
Query: 181 TCWCKHTETLKFSKVEHLVLDEADR-ILDQGYER 213
K + + H+ +D+ R + ++G E+
Sbjct: 281 V---KDLARVSLTSPVHVDVDDGRRKVTNEGLEQ 311
Score = 345 (126.5 bits), Expect = 2.2e-69, Sum P(2) = 2.2e-69
Identities = 78/208 (37%), Positives = 124/208 (59%)
Query: 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST 679
V + L+Q + V P K RL+ L SF+ +N+N+ K++VF +T +HTE++
Sbjct: 304 VTNEGLEQGYCVVPSKQRLILLISFLK---KNLNK----KIMVFFSTCKSVQFHTEIMKI 356
Query: 680 VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS 739
++ +HG M Q+ RT+ F F K G+L+CTDVAARGLD+P VDWI+QY P
Sbjct: 357 ---SDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPD 413
Query: 740 SSTDYVHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDC-LQNLLSV 797
T+Y+HRVGRTAR G +G +LL LIP E++ + L+ ++ ++E++ + L N+ S
Sbjct: 414 KPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYLKAAKVPVKELEFNEKRLSNVQSA 473
Query: 798 KMEGDLSRLADGNVETAATALQMSFESA 825
+E +++ D N+ A ++ SA
Sbjct: 474 -LEKCVAK--DYNLNKLAKDAYRAYLSA 498
Score = 163 (62.4 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 40/113 (35%), Positives = 67/113 (59%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ + ++ LV+DEADRIL++ +E D+ + L+IL K + Q+ L SAT T V+
Sbjct: 227 QNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTR---QTALFSATQTSKVKD 283
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 297
LA ++L +P+ +D D T+ + L+Q + V P K RL+ L SF+
Sbjct: 284 LARVSLTSPVHVDVDDGR--RKVTN-----EGLEQGYCVVPSKQRLILLISFL 329
Score = 128 (50.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 43/145 (29%), Positives = 72/145 (49%)
Query: 186 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF-QSVLLSATLTPAVQR 244
H + K +HL D D+ E + E + + K P+ Q+ L SAT T V+
Sbjct: 225 HLQNTKAFIYKHLKCLVIDEA-DRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKD 283
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304
LA ++L +P+ +D D T+ + L+Q + V P K RL+ L SF+ +N+
Sbjct: 284 LARVSLTSPVHVDVDDGR--RKVTN-----EGLEQGYCVVPSKQRLILLISFLK---KNL 333
Query: 305 NEDEESKMLVFMATQDMADYHTELL 329
N+ K++VF +T +HTE++
Sbjct: 334 NK----KIMVFFSTCKSVQFHTEIM 354
Score = 66 (28.3 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 812 ETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKS 871
E + +Q + E V + L+ A Y +++ Y S+S L+ IFN ++ L A+S
Sbjct: 464 EKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYNSHS--LKDIFNVHRLDLLAVAES 521
Query: 872 FALRDAPSV 880
F P V
Sbjct: 522 FCFSSPPKV 530
>SGD|S000001732 [details] [associations]
symbol:DBP7 "Putative ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001732
GO:GO:0005524 GO:GO:0005730 EMBL:BK006944 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
OMA:RAYATHI OrthoDB:EOG4W6S47 EMBL:Z28249 PIR:S38093
RefSeq:NP_012949.1 ProteinModelPortal:P36120 SMR:P36120
DIP:DIP-1833N IntAct:P36120 MINT:MINT-395227 STRING:P36120
PaxDb:P36120 PeptideAtlas:P36120 EnsemblFungi:YKR024C GeneID:853894
KEGG:sce:YKR024C CYGD:YKR024c GeneTree:ENSGT00550000075041
NextBio:975207 Genevestigator:P36120 GermOnline:YKR024C
Uniprot:P36120
Length = 742
Score = 457 (165.9 bits), Expect = 5.4e-69, Sum P(3) = 5.4e-69
Identities = 115/343 (33%), Positives = 189/343 (55%)
Query: 361 ISSLFQNNPDIPNVPTRRLKPVSEALF---APTSYEEFP--GIHPFMKKNLNEGMNITQV 415
+SSLF +N +I + + A+ AP ++F G+ + +L + M I +
Sbjct: 108 VSSLFTSNREITTAVNTNIHDENVAINPSNAPLKGDQFASLGVSSLLVSHLEQKMRIKKP 167
Query: 416 TTVQQLSIQPIL-DGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472
T++Q+ +I I+ + G D + +QTGSGKTL+Y +PII + M + R G +A++I
Sbjct: 168 TSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALVI 227
Query: 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 532
PTRELA Q + + L ++VP L GGE+ KSEKAR+RKG + ++ TPGR+LDH
Sbjct: 228 APTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDHL 287
Query: 533 KHTETLK---FSKVEHLVLDEADRILDQGYERDIAEFLEI-----LKKQK-PQFQS---- 579
++T+ +K + ++VLDE D++++ G++ I+E ++I + +K P+
Sbjct: 288 QNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPHKLVH 347
Query: 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLV 639
+L SATLT V RL + L++ I D T V PD L Q + PPKLRLV
Sbjct: 348 MLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVT---VAPDQLLQRITIVPPKLRLV 404
Query: 640 ALASFILGKCQN-VNEDEESKML---VFMATQDMADYHTELLS 678
LA+ + ++ + ++SK L VF++ D ++H + S
Sbjct: 405 TLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFS 447
Score = 347 (127.2 bits), Expect = 6.4e-56, Sum P(3) = 6.4e-56
Identities = 87/284 (30%), Positives = 158/284 (55%)
Query: 1 MNITQVTTVQQLSIQPIL-DGG--DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDG 57
M I + T++Q+ +I I+ + G D + +QTGSGKTL+Y +PII + M + R G
Sbjct: 162 MRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSG 221
Query: 58 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 117
+A++I PTRELA Q + + L ++VP L GGE+ KSEKAR+RKG + ++ TPG
Sbjct: 222 AFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPG 281
Query: 118 RLLDHCKHTETLK---FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSI-LL 173
R+LDH ++T+ +K + ++VLDE D++++ G++ I+E ++I+ + L
Sbjct: 282 RVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKL 341
Query: 174 SATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERD-----IA--EFLEILKKQK 226
L C T+ + +++ ++ L + +++ G ++D +A + L+ +
Sbjct: 342 PHKLVHMLCSATLTDGV--NRLRNVALKDY-KLISNGTKKDSDIVTVAPDQLLQRITIVP 398
Query: 227 PQFQSVLLSATLTPAVQRL--AGM---TLQNPIQIDAADSTDIH 265
P+ + V L+ATL + +G TL+ + + +DS + H
Sbjct: 399 PKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFH 442
Score = 209 (78.6 bits), Expect = 5.4e-69, Sum P(3) = 5.4e-69
Identities = 44/100 (44%), Positives = 63/100 (63%)
Query: 684 NIAFFKLHGSMSQSERTEVFKTF---RSVKSG---VLICTDVAARGLDLPLVDWIVQYTA 737
++ +KLHGS+SQ RT + F G ++ CTDVA+RGLDLP V +++
Sbjct: 481 DVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDP 540
Query: 738 PSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV-KLVEELQ 776
P + D++HRVGRTAR G +G SLLFL+P E K ++ +Q
Sbjct: 541 PFAVEDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQ 580
Score = 156 (60.0 bits), Expect = 7.0e-35, Sum P(3) = 7.0e-35
Identities = 46/150 (30%), Positives = 78/150 (52%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEI-----LKKQK-PQFQS----VLLSATLTPAVQR 244
+ ++VLDE D++++ G++ I+E ++I + +K P+ +L SATLT V R
Sbjct: 301 LRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPHKLVHMLCSATLTDGVNR 360
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN- 303
L + L++ I D T V PD L Q + PPKLRLV LA+ + ++
Sbjct: 361 LRNVALKDYKLISNGTKKDSDIVT---VAPDQLLQRITIVPPKLRLVTLAATLNNITKDF 417
Query: 304 VNEDEESKML---VFMATQDMADYHTELLS 330
+ ++SK L VF++ D ++H + S
Sbjct: 418 IASGQQSKTLRTIVFVSCSDSVEFHYDAFS 447
Score = 150 (57.9 bits), Expect = 5.4e-69, Sum P(3) = 5.4e-69
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 812 ETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKS 871
+T AT ++ E V+ A KG+ S VR YA++ + FN K +HLGH AKS
Sbjct: 633 DTNATTWHLNIERRVVGDSAFKNLAVKGFISHVRAYATHISQEKKFFNVKFLHLGHLAKS 692
Query: 872 FALRDAPSVISGIGXXXXXXXXXXXXMAINKEKSFKQRGNFSKKQMLSEFD 922
F LR+ P + G+ +K K F+ ++KQ+ SEF+
Sbjct: 693 FGLRERPKAM-GLQSSKDGNSEKKPTKENSKNKMFRM-ARMAEKQIASEFN 741
>CGD|CAL0000117 [details] [associations]
symbol:DBP7 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000117 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
EMBL:AP006852 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 EMBL:AACQ01000156
RefSeq:XP_712474.1 RefSeq:XP_888745.1 ProteinModelPortal:Q59S50
STRING:Q59S50 GeneID:3645903 GeneID:3704147 KEGG:cal:CaO19.6902
KEGG:cal:CaO19_6902 KO:K14806 Uniprot:Q59S50
Length = 727
Score = 424 (154.3 bits), Expect = 6.2e-68, Sum P(2) = 6.2e-68
Identities = 113/342 (33%), Positives = 184/342 (53%)
Query: 361 ISSLFQNN-PDIPNVPTRRLK-----PVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQ 414
+SSLF NN P PT K P + + T++ G++ + +L + +
Sbjct: 100 VSSLFTNNQPTSHLAPTSTTKELTYLPSNAPMKDATNFSGL-GLNEKLSIHLTDHLRFMH 158
Query: 415 VTTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIYAVII 472
T +QQL I ++ D+ V++QTGSGKTLA+ +PI KL +E + KI+R+ G++A+I+
Sbjct: 159 PTKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVLPIFHKLMRENKFKINRESGLFAIIL 218
Query: 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 532
PTRELA Q + L + WIVP + GGEK KSEKAR+RKG +ILVATPGRL DH
Sbjct: 219 TPTRELATQIYGVLETLTRCHHWIVPGIVIGGEKKKSEKARLRKGCNILVATPGRLADHL 278
Query: 533 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL-EILKKQK-----PQFQSI------ 580
++T+TL S++ LVLDE D++++ G+E IA+ +I K ++Q +
Sbjct: 279 ENTKTLDISQLRWLVLDEGDKLMELGFEDTIAQITAKIDSNSKIADTAEKWQGLPSRRIN 338
Query: 581 -LLSATLTPAVQRLAGMTLQNP--IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
L SATL V++L + L++P I ++ A + +++ S ++ +
Sbjct: 339 MLCSATLHSNVKKLGSIVLKDPEMISVETASVAGTVSFDETIATTTSTAPDQLIQNVVVV 398
Query: 638 LVALASFILGKCQ-NVNEDEESKMLVFMATQDMADYHTELLS 678
L L +++ + +VF + D D+H ++ +
Sbjct: 399 PPKLRLVTLDALLLKISKHSAERTIVFFSCSDSVDFHFDVFT 440
Score = 382 (139.5 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 77/152 (50%), Positives = 109/152 (71%)
Query: 7 TTVQQLSIQPILDG-GDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIYAVIIL 64
T +QQL I ++ D+ V++QTGSGKTLA+ +PI KL +E + KI+R+ G++A+I+
Sbjct: 160 TKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVLPIFHKLMRENKFKINRESGLFAIILT 219
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA Q + L + WIVP + GGEK KSEKAR+RKG +ILVATPGRL DH +
Sbjct: 220 PTRELATQIYGVLETLTRCHHWIVPGIVIGGEKKKSEKARLRKGCNILVATPGRLADHLE 279
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAE 156
+T+TL S++ LVLDE D++++ G+E IA+
Sbjct: 280 NTKTLDISQLRWLVLDEGDKLMELGFEDTIAQ 311
Score = 344 (126.2 bits), Expect = 6.2e-68, Sum P(2) = 6.2e-68
Identities = 88/285 (30%), Positives = 151/285 (52%)
Query: 648 KCQNVNEDEESKM-LVFMATQDMADYHTELLSTV-LGENIAFFKLHGSMSQSERTEVFKT 705
K + V ++E ++ V ++ +D D + LL+ L +N +KLHGS+SQ R ++
Sbjct: 445 KFKKVTDEETGEVKTVLVSPED--DENDGLLTAPQLSDNTIIYKLHGSLSQQTRASTLQS 502
Query: 706 F---RSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762
F + + +L CTDVA+RGLDLP V +++Y P + D++HR+GR+AR+G+EG++ L
Sbjct: 503 FVKDNNSYNKILFCTDVASRGLDLPNVANVIEYDPPFTIDDHLHRIGRSARLGNEGNATL 562
Query: 763 FLIPS-EVKLVE-ELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLAD--GNVETAATAL 818
FL+P E V+ +L+ R +++K+ + L +G++ + G + AT
Sbjct: 563 FLLPGIEEGYVDGKLRVAHPREGNLRVKNYEKILQEGFAQGNIKSKDNKLGKWDIHATTW 622
Query: 819 QMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAP 878
+ E +L+ + H A + +TS +R YA++ R FN K +HLGH AKSF LR+ P
Sbjct: 623 HLDVERWLLEDQASHDEAVRAFTSHIRAYATHLSSEREFFNVKLLHLGHLAKSFGLRETP 682
Query: 879 SVIS-GIGXXXXXXXXXXXXMAINKEKSFKQRGNFSKKQMLSEFD 922
+ +G ++K + + K SEF+
Sbjct: 683 KKLGKSVGNNSNYSESKKGKKEDPRKKMLRM-AKMAVKSASSEFN 726
Score = 93 (37.8 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 36/162 (22%), Positives = 76/162 (46%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL-EILKKQK-----PQFQ-------S 231
++T+TL S++ LVLDE D++++ G+E IA+ +I K ++Q +
Sbjct: 279 ENTKTLDISQLRWLVLDEGDKLMELGFEDTIAQITAKIDSNSKIADTAEKWQGLPSRRIN 338
Query: 232 VLLSATLTPAVQRLAGMTLQNP--IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 289
+L SATL V++L + L++P I ++ A + +++ S ++ +
Sbjct: 339 MLCSATLHSNVKKLGSIVLKDPEMISVETASVAGTVSFDETIATTTSTAPDQLIQNVVVV 398
Query: 290 LVALASFILGKCQ-NVNEDEESKMLVFMATQDMADYHTELLS 330
L L +++ + +VF + D D+H ++ +
Sbjct: 399 PPKLRLVTLDALLLKISKHSAERTIVFFSCSDSVDFHFDVFT 440
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 613 (220.8 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 156/416 (37%), Positives = 238/416 (57%)
Query: 391 SYEEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
S+E P +HP + L E + +T VQ +I + DV + TGSGKTLA+ IP
Sbjct: 8 SWESLPVPLHPQVLSVLRE-LGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEK 506
I++ L K +K + A+II PTRELA+Q E+ FTK F+ I+ W+ GG
Sbjct: 67 IVEILLRREEKF-KKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQIL--WI-GGRN 122
Query: 507 MKSEKARIRK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYE 560
+ AR ++ G +I+VATPGRL D + E L + +E LVLDEADR+LD G+E
Sbjct: 123 PGEDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFE 182
Query: 561 RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620
I LE L KQ+ ++ L SAT T V+ L L+NP++I + ++T
Sbjct: 183 TSINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKT- 238
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
P L+ H++V + L F+ N +E K LVF +T +Y+ + L T+
Sbjct: 239 -PSRLENHYMVCKADEKFNQLVHFLR------NHKQE-KHLVFFSTCACVEYYGKALETL 290
Query: 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
+ + + +HG M +R ++F FR ++SG+L+CTDV ARG+D+P V+W++QY PS+
Sbjct: 291 V-KGVKIMCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSN 348
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIKLKDCLQNLL 795
++ +VHR GRTAR+GH GS+L+FL+P E + L N++ ++E+KL+ +LL
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPMEESYISFLAINQKCPLQEMKLQKNTADLL 404
Score = 270 (100.1 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 77/182 (42%), Positives = 105/182 (57%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T VQ +I + DV + TGSGKTLA+ IPI++ L K +K + A+II P
Sbjct: 32 MTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIVEILLRREEKF-KKSQVGAIIITP 90
Query: 66 TRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLD 121
TRELA+Q E+ FTK F+ I+ W+ GG + AR ++ G +I+VATPGRL D
Sbjct: 91 TRELAVQIEEVLSHFTKPFPQFSQIL--WI-GGRNPGEDVARFKELGGNIIVATPGRLED 147
Query: 122 HCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ E L + +E LVLDEADR+LD G+E I LE L KQ+ ++ L SAT
Sbjct: 148 MFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQR---RTGLFSAT 204
Query: 177 LT 178
T
Sbjct: 205 QT 206
Score = 160 (61.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 47/137 (34%), Positives = 70/137 (51%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+E LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP+
Sbjct: 165 LEVLVLDEADRLLDMGFETSINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPV 221
Query: 255 QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 314
+I + ++T P L+ H++V + L F+ N +E K LV
Sbjct: 222 RISVKEKGVAASSTQKT--PSRLENHYMVCKADEKFNQLVHFLR------NHKQE-KHLV 272
Query: 315 FMATQDMADYHTELLST 331
F +T +Y+ + L T
Sbjct: 273 FFSTCACVEYYGKALET 289
Score = 61 (26.5 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
++ L + + K + S+V+ YA + +L IF K + A+ FAL P +
Sbjct: 408 KAMALGDRAVFEKGMKAFVSYVQAYAKHECNL--IFRLKDLDFASLARGFALLRMPKM 463
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 606 (218.4 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 153/416 (36%), Positives = 241/416 (57%)
Query: 391 SYEEFPG-IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
S+E P +HP + L + + +T VQ +I + DV + TGSGKTLA+ IP
Sbjct: 8 SWESLPTQLHPQVLGALGQ-LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEK 506
I++ L K+ +K+ + A+II PTRELA+Q E+ FTK F+ I+ W+ GG
Sbjct: 67 ILEILLRREEKL-KKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQIL--WI-GGRN 122
Query: 507 MKSEKARIRK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYE 560
+ +R ++ G +I+VATPGRL D + E L + +E LVLDEADR+LD G+E
Sbjct: 123 PADDVSRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFE 182
Query: 561 RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620
I LE L KQ+ ++ L SAT T V+ L L+NP++I + ++T
Sbjct: 183 ASINTILEFLPKQR---RTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKT- 238
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
P L+ +++V + L F+ N +E K L+F +T +Y+ + L +
Sbjct: 239 -PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLIFFSTCACVEYYGKALEAL 290
Query: 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
+ +++ +HG M +R ++F FR ++SG+L+CTDV ARG+D+P V+W++QY PSS
Sbjct: 291 V-KSVKIMCIHGKMKH-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSS 348
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIKLKDCLQNLL 795
++ +VHR GRTAR+GH GS+L+FL+P E V L+ N++ ++E+KL+ +LL
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPMEESYVTFLEINQKCPLQEMKLQKNTGDLL 404
Score = 273 (101.2 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 76/187 (40%), Positives = 108/187 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ +T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K+ + A
Sbjct: 27 LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKNQVGA 85
Query: 61 VIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATP 116
+II PTRELA+Q E+ FTK F+ I+ W+ GG + +R ++ G +I+VATP
Sbjct: 86 IIITPTRELAIQVDEVLAHFTKSFPQFSQIL--WI-GGRNPADDVSRFKEQGGNIIVATP 142
Query: 117 GRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSI 171
GRL D + E L + +E LVLDEADR+LD G+E I LE L KQ+ ++
Sbjct: 143 GRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQR---RTG 199
Query: 172 LLSATLT 178
L SAT T
Sbjct: 200 LFSATQT 206
Score = 147 (56.8 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 44/135 (32%), Positives = 69/135 (51%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+E LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP+
Sbjct: 165 LEVLVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQTQEVESLVRAGLRNPV 221
Query: 255 QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 314
+I + ++T P L+ +++V + L F+ N +E K L+
Sbjct: 222 RISVKEKGVAASSTQKT--PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLI 272
Query: 315 FMATQDMADYHTELL 329
F +T +Y+ + L
Sbjct: 273 FFSTCACVEYYGKAL 287
Score = 65 (27.9 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+S L + + K + S+V+ YA + +L IF K + A+ FAL P +
Sbjct: 408 KSMALADRAVFEKGMKAFVSYVQAYAKHECNL--IFRLKDLDFASLARGFALLRMPKM 463
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ E LK ++V +++ + Q + E L K PQF IL PA
Sbjct: 73 RREEKLKKNQVGAIIITPTRELAIQ-----VDEVLAHFTKSFPQFSQILWIGGRNPA 124
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 607 (218.7 bits), Expect = 6.6e-63, Sum P(2) = 6.6e-63
Identities = 156/416 (37%), Positives = 237/416 (56%)
Query: 391 SYEEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
S+E P +HP + L E + +T VQ +I + DV + TGSGKTLA+ IP
Sbjct: 8 SWESLPVPLHPKVLSVLRE-LGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEK 506
I + L K +K + A+II PTRELA+Q E+ FTK F+ I+ W+ GG
Sbjct: 67 IEEILLRREEKF-KKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQIL--WI-GGRN 122
Query: 507 MKSEKARIRK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYE 560
+ AR ++ G +I+VATPGRL D + E L + +E LVLDEADR+LD G+E
Sbjct: 123 PGEDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFE 182
Query: 561 RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620
I LE L KQ+ ++ L SAT T V+ L L+NP++I + ++T
Sbjct: 183 TSINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKT- 238
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
P L+ H++V + L F+ N +E K LVF +T +Y+ + L T+
Sbjct: 239 -PSRLENHYMVCKADEKFNQLVHFLR------NHKQE-KHLVFFSTCACVEYYGKALETL 290
Query: 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
+ + + +HG M +R ++F FR ++SG+L+CTDV ARG+D+P V+W++QY PS+
Sbjct: 291 V-KGVKIMCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSN 348
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIKLKDCLQNLL 795
++ +VHR GRTAR+GH GS+L+FL+P E + L N++ ++E+KL+ +LL
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPMEESYISFLAINQKCPLQEMKLQKNTADLL 404
Score = 264 (98.0 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 77/182 (42%), Positives = 104/182 (57%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T VQ +I + DV + TGSGKTLA+ IPI + L K +K + A+II P
Sbjct: 32 MTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIEEILLRREEKF-KKSQVGAIIITP 90
Query: 66 TRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLD 121
TRELA+Q E+ FTK F+ I+ W+ GG + AR ++ G +I+VATPGRL D
Sbjct: 91 TRELAVQIEEVLSHFTKPFPQFSQIL--WI-GGRNPGEDVARFKELGGNIIVATPGRLED 147
Query: 122 HCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ E L + +E LVLDEADR+LD G+E I LE L KQ+ ++ L SAT
Sbjct: 148 MFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQR---RTGLFSAT 204
Query: 177 LT 178
T
Sbjct: 205 QT 206
Score = 160 (61.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 47/137 (34%), Positives = 70/137 (51%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+E LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP+
Sbjct: 165 LEVLVLDEADRLLDMGFETSINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPV 221
Query: 255 QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 314
+I + ++T P L+ H++V + L F+ N +E K LV
Sbjct: 222 RISVKEKGVAASSTQKT--PSRLENHYMVCKADEKFNQLVHFLR------NHKQE-KHLV 272
Query: 315 FMATQDMADYHTELLST 331
F +T +Y+ + L T
Sbjct: 273 FFSTCACVEYYGKALET 289
Score = 61 (26.5 bits), Expect = 6.6e-63, Sum P(2) = 6.6e-63
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
++ L + + K + S+V+ YA + +L IF K + A+ FAL P +
Sbjct: 408 KAMALGDRAVFEKGMKAFVSYVQAYAKHECNL--IFRLKDLDFASLARGFALLRMPKM 463
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 414 (150.8 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 102/273 (37%), Positives = 163/273 (59%)
Query: 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463
K++ E M ++T +Q +I P++ G DVL ++TGSGKTLA+ IP ++ L R K +
Sbjct: 167 KSIKE-MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLY--RVKFTP 223
Query: 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
++G ++I PTRELA+Q+ + +L K + V + GGEK K+E + KG+++LVA
Sbjct: 224 RNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGK-VIGGEKRKTEAEILAKGVNLLVA 282
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
TPGRLLDH ++T F ++ LV+DEADRIL+Q +E D+ + L +L K + Q+ L S
Sbjct: 283 TPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTR---QTSLFS 339
Query: 584 ATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALAS 643
AT + V+ LA ++L +P+ ID + T+ + L+Q + V P +RL+ L +
Sbjct: 340 ATQSAKVEDLARVSLTSPVYIDVDEGRK--EVTN-----EGLEQGYCVVPSAMRLLFLLT 392
Query: 644 FILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676
F L + Q + K++VF +T +H EL
Sbjct: 393 F-LKRFQG-----KKKIMVFFSTCKSTKFHAEL 419
Score = 347 (127.2 bits), Expect = 7.4e-63, Sum P(3) = 7.4e-63
Identities = 88/245 (35%), Positives = 142/245 (57%)
Query: 556 DQGYERDIAEFLEILKKQKPQF-QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHN 614
D+ E++ E L+ + P+ Q+ L SAT + V+ LA ++L +P+ ID +
Sbjct: 311 DRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRK--E 368
Query: 615 TTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 674
T+ + L+Q + V P +RL+ L +F L + Q + K++VF +T +H
Sbjct: 369 VTN-----EGLEQGYCVVPSAMRLLFLLTF-LKRFQG-----KKKIMVFFSTCKSTKFHA 417
Query: 675 ELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734
EL + + + ++ G + Q++RT F F ++G+L+CT+VAARGLD P VDWIVQ
Sbjct: 418 ELFRYIKFDCL---EIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQ 474
Query: 735 YTAPSSSTDYVHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQN 793
Y P + TDY+HRVGRTAR G +G +LL L P E+K ++ L+ +I +EE + ++ +
Sbjct: 475 YDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYLKAAKIPVEEHEFEE--KK 532
Query: 794 LLSVK 798
LL VK
Sbjct: 533 LLDVK 537
Score = 341 (125.1 bits), Expect = 7.4e-63, Sum P(3) = 7.4e-63
Identities = 75/176 (42%), Positives = 114/176 (64%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M ++T +Q +I P++ G DVL ++TGSGKTLA+ IP ++ L R K + ++G
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLY--RVKFTPRNGTGV 229
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++I PTRELA+Q+ + +L K + V + GGEK K+E + KG+++LVATPGRLL
Sbjct: 230 LVICPTRELAIQSYGVAKELLKYHSQTVGK-VIGGEKRKTEAEILAKGVNLLVATPGRLL 288
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
DH ++T F ++ LV+DEADRIL+Q +E D+ + L +L K + Q+ L SAT
Sbjct: 289 DHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTR---QTSLFSAT 341
Score = 168 (64.2 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 47/144 (32%), Positives = 79/144 (54%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T F ++ LV+DEADRIL+Q +E D+ + L +L K + Q+ L SAT + V+
Sbjct: 292 ENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTR---QTSLFSATQSAKVED 348
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304
LA ++L +P+ ID + T+ + L+Q + V P +RL+ L +F L + Q
Sbjct: 349 LARVSLTSPVYIDVDEGRK--EVTN-----EGLEQGYCVVPSAMRLLFLLTF-LKRFQG- 399
Query: 305 NEDEESKMLVFMATQDMADYHTEL 328
+ K++VF +T +H EL
Sbjct: 400 ----KKKIMVFFSTCKSTKFHAEL 419
Score = 78 (32.5 bits), Expect = 7.4e-63, Sum P(3) = 7.4e-63
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
E+ + + L SA + Y +++ Y S+S ++ +FN Q++L A SF D P V
Sbjct: 541 ENLISENYALKESAKEAYKTYISGYDSHS--MKDVFNVHQLNLTEVATSFGFSDPPKV 596
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 596 (214.9 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 154/416 (37%), Positives = 237/416 (56%)
Query: 391 SYEEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
S+E P +HP + L E + +T VQ +I + DV + TGSGKTLA+ IP
Sbjct: 8 SWESLPVPLHPRVLDVLQE-LGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEK 506
I++ L K+ +K + A+II PTRELA+Q E+ FTK F+ I+ W+ GG
Sbjct: 67 ILEILLRREEKL-KKSQVGAIIITPTRELAVQIDEVLSHFTKPFPQFSQIL--WI-GGRN 122
Query: 507 MKSEKARIRK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYE 560
+ AR ++ G +I+VATPGRL D + E L + ++ LVLDEADR+LD G+E
Sbjct: 123 PGEDVARFKEHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFE 182
Query: 561 RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620
I LE L KQ+ ++ L SAT T V+ L L+NP++I + ++T
Sbjct: 183 ASINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRISVKEKGAAASSTQKT- 238
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
P L+ +++V + L F+ N +E K LVF +T +Y+ + L +
Sbjct: 239 -PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLVFFSTCACVEYYGKALEAL 290
Query: 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
+ ++ +HG M +R ++F FR ++SG+L+CTDV ARG+D+P V+W++QY PSS
Sbjct: 291 V-RSVKIMCIHGKMKY-KRNKIFMEFRQLQSGILVCTDVMARGIDIPEVNWVLQYDPPSS 348
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIKLKDCLQNLL 795
++ +VHR GRTAR+GH GS+L+FL+P E V L N++ ++ +KL+ +LL
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPMEESYVNFLAINQKCPLQAMKLQKNTVDLL 404
Score = 267 (99.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 76/182 (41%), Positives = 106/182 (58%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K + A+II P
Sbjct: 32 MTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKSQVGAIIITP 90
Query: 66 TRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLD 121
TRELA+Q E+ FTK F+ I+ W+ GG + AR ++ G +I+VATPGRL D
Sbjct: 91 TRELAVQIDEVLSHFTKPFPQFSQIL--WI-GGRNPGEDVARFKEHGGNIIVATPGRLED 147
Query: 122 HCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ E L + ++ LVLDEADR+LD G+E I LE L KQ+ ++ L SAT
Sbjct: 148 MFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSAT 204
Query: 177 LT 178
T
Sbjct: 205 QT 206
Score = 147 (56.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 44/132 (33%), Positives = 67/132 (50%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID 257
LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP++I
Sbjct: 168 LVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRIS 224
Query: 258 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317
+ ++T P L+ +++V + L F+ N +E K LVF +
Sbjct: 225 VKEKGAAASSTQKT--PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLVFFS 275
Query: 318 TQDMADYHTELL 329
T +Y+ + L
Sbjct: 276 TCACVEYYGKAL 287
Score = 68 (29.0 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 20/96 (20%), Positives = 41/96 (42%)
Query: 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWV 844
+ +++ N L++ + L + ++ L +S L + + K + S+V
Sbjct: 373 LPMEESYVNFLAINQKCPLQAM---KLQKNTVDLLPKLKSMALADRAVFEKGMKAFVSYV 429
Query: 845 RFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+ YA + +L IF K + A+ FAL P +
Sbjct: 430 QAYAKHECNL--IFRLKDLDFASIARGFALLRMPKM 463
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 606 (218.4 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 153/416 (36%), Positives = 241/416 (57%)
Query: 391 SYEEFPG-IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
S+E P +HP + L + + +T VQ +I + DV + TGSGKTLA+ IP
Sbjct: 8 SWESLPTQLHPQVLGALGQ-LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIP 66
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEK 506
I++ L K+ +K+ + A+II PTRELA+Q E+ FTK F+ I+ W+ GG
Sbjct: 67 ILEILLRREEKL-KKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQIL--WI-GGRN 122
Query: 507 MKSEKARIRK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYE 560
+ +R ++ G +I+VATPGRL D + E L + +E LVLDEADR+LD G+E
Sbjct: 123 PADDVSRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFE 182
Query: 561 RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620
I LE L KQ+ ++ L SAT T V+ L L+NP++I + ++T
Sbjct: 183 ASINTILEFLPKQR---RTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKT- 238
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
P L+ +++V + L F+ N +E K L+F +T +Y+ + L +
Sbjct: 239 -PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLIFFSTCACVEYYGKALEAL 290
Query: 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
+ +++ +HG M +R ++F FR ++SG+L+CTDV ARG+D+P V+W++QY PSS
Sbjct: 291 V-KSVKIMCIHGKMKH-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSS 348
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIKLKDCLQNLL 795
++ +VHR GRTAR+GH GS+L+FL+P E V L+ N++ ++E+KL+ +LL
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPMEESYVTFLEINQKCPLQEMKLQKNTGDLL 404
Score = 273 (101.2 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
Identities = 76/187 (40%), Positives = 108/187 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ +T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K+ + A
Sbjct: 27 LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKNQVGA 85
Query: 61 VIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATP 116
+II PTRELA+Q E+ FTK F+ I+ W+ GG + +R ++ G +I+VATP
Sbjct: 86 IIITPTRELAIQVDEVLAHFTKSFPQFSQIL--WI-GGRNPADDVSRFKEQGGNIIVATP 142
Query: 117 GRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSI 171
GRL D + E L + +E LVLDEADR+LD G+E I LE L KQ+ ++
Sbjct: 143 GRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQR---RTG 199
Query: 172 LLSATLT 178
L SAT T
Sbjct: 200 LFSATQT 206
Score = 147 (56.8 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 44/135 (32%), Positives = 69/135 (51%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+E LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP+
Sbjct: 165 LEVLVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQTQEVESLVRAGLRNPV 221
Query: 255 QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 314
+I + ++T P L+ +++V + L F+ N +E K L+
Sbjct: 222 RISVKEKGVAASSTQKT--PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLI 272
Query: 315 FMATQDMADYHTELL 329
F +T +Y+ + L
Sbjct: 273 FFSTCACVEYYGKAL 287
Score = 49 (22.3 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+S L + + K + S+V+ YA + +L IF K L A+ FAL P +
Sbjct: 408 KSMALADRAVFEKGMKAFVSYVQAYAKHECNL--IFRLKAKIL---ARGFALLRMPKM 460
Score = 37 (18.1 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ E LK ++V +++ + Q + E L K PQF IL PA
Sbjct: 73 RREEKLKKNQVGAIIITPTRELAIQ-----VDEVLAHFTKSFPQFSQILWIGGRNPA 124
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 408 (148.7 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 104/301 (34%), Positives = 171/301 (56%)
Query: 381 PVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGS 440
P E +EE P +K E M T +T+VQ +I P+L G DVL ++TGS
Sbjct: 33 PEGEQTTCVEKFEELKLSQPTLKAI--EKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGS 90
Query: 441 GKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500
GKTLA+ IP I+ L + K ++G ++I PTRELALQ + +L + +
Sbjct: 91 GKTLAFLIPAIELLHSL--KFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTF-GI 147
Query: 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE 560
+ GG + E ++ KG+++L+ATPGRLLDH ++T+ F ++ L++DEADRIL+ G+E
Sbjct: 148 VIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFE 207
Query: 561 RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSL 619
++ + ++IL + Q S+L SAT T V+ LA ++L+ P+ I+ TD N+T
Sbjct: 208 DEMRQIIKILPNEDRQ--SMLFSATQTTKVEDLARISLRPGPLFINVVPETD--NST--- 260
Query: 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST 679
D L+Q ++V R + L SF+ +++ K++VF+++ + Y+ ELL+
Sbjct: 261 --ADGLEQGYVVCDSDKRFLLLFSFL-------KRNQKKKIIVFLSSCNSVKYYAELLNY 311
Query: 680 V 680
+
Sbjct: 312 I 312
Score = 329 (120.9 bits), Expect = 1.8e-61, Sum P(3) = 1.8e-61
Identities = 82/241 (34%), Positives = 134/241 (55%)
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
QS+L SAT T V+ LA ++L+ P + + N+T D L+Q ++V R
Sbjct: 223 QSMLFSATQTTKVEDLARISLR-PGPLFINVVPETDNST-----ADGLEQGYVVCDSDKR 276
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
+ L SF+ +++ K++VF+++ + Y+ ELL+ + ++ +LHG Q
Sbjct: 277 FLLLFSFL-------KRNQKKKIIVFLSSCNSVKYYAELLNYI---DLPVLELHGKQKQQ 326
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR-VGH 756
+RT F F + + G+LICTDVAARGLD+P VDWI+Q+ P DY+HRVGRTAR
Sbjct: 327 KRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKG 386
Query: 757 EGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAAT 816
+G SL+FL P+E+ + L+ ++ + E + + N ++ ++ L +L N T
Sbjct: 387 KGKSLMFLTPNELGFLRYLKASKVPLNEYEFPE---NKIA-NVQSQLEKLIKSNYYLHQT 442
Query: 817 A 817
A
Sbjct: 443 A 443
Score = 327 (120.2 bits), Expect = 1.8e-61, Sum P(3) = 1.8e-61
Identities = 72/178 (40%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T+VQ +I P+L G DVL ++TGSGKTLA+ IP I+ L + K ++G
Sbjct: 60 MGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSL--KFKPRNGTGI 117
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++I PTRELALQ + +L + + + GG + E ++ KG+++L+ATPGRLL
Sbjct: 118 IVITPTRELALQIFGVARELMEFHSQTF-GIVIGGANRRQEAEKLMKGVNMLIATPGRLL 176
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T+ F ++ L++DEADRIL+ G+E ++ + ++IL + Q S+L SAT T
Sbjct: 177 DHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQ--SMLFSATQT 232
Score = 170 (64.9 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 72/254 (28%), Positives = 129/254 (50%)
Query: 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD---HCKHTETLKF-SKVEHL 137
K+ +++P+ E + S K + R G I+V TP R L E ++F S+ +
Sbjct: 92 KTLAFLIPAI----ELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGI 147
Query: 138 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEH 197
V+ A+R R AE +++K +L AT ++T+ F ++
Sbjct: 148 VIGGANR-------RQEAE--KLMKGVN------MLIATPGRLLDHLQNTKGFVFKNLKA 192
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQ-NPIQI 256
L++DEADRIL+ G+E ++ + ++IL + Q S+L SAT T V+ LA ++L+ P+ I
Sbjct: 193 LIIDEADRILEIGFEDEMRQIIKILPNEDRQ--SMLFSATQTTKVEDLARISLRPGPLFI 250
Query: 257 DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFM 316
+ TD N+T D L+Q ++V R + L SF+ +++ K++VF+
Sbjct: 251 NVVPETD--NST-----ADGLEQGYVVCDSDKRFLLLFSFL-------KRNQKKKIIVFL 296
Query: 317 ATQDMADYHTELLS 330
++ + Y+ ELL+
Sbjct: 297 SSCNSVKYYAELLN 310
Score = 85 (35.0 bits), Expect = 1.8e-61, Sum P(3) = 1.8e-61
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 812 ETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKS 871
E +Q E + LH +A GY S+++ YAS+S L+ ++ ++ L AKS
Sbjct: 419 ENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHS--LKTVYQIDKLDLAKVAKS 476
Query: 872 FALRDAPSVISGIG 885
+ P V IG
Sbjct: 477 YGFPVPPKVNITIG 490
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 407 (148.3 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 112/338 (33%), Positives = 187/338 (55%)
Query: 344 DPDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMK 403
D + E +K VK S N PD+P+V L P + P + E G+
Sbjct: 88 DEEKKEEDEKDNVKE---DSGKANVPDLPSVDAVSL-PQPDG--GPKKFTEL-GLSEKTL 140
Query: 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463
+ + E M +T +QQ +I P+L G DVL ++TGSGKTLA+ IP I+ L +R K
Sbjct: 141 QGIKE-MGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFK--P 197
Query: 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
++G +++ PTRELALQ + +L + + + GG ++E ++ KG+++L+A
Sbjct: 198 RNGTGVIVVSPTRELALQIFGVARELLTAHSQTY-GIVIGGANRRAEAEKLTKGVNLLIA 256
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
TPGRLLDH ++T F ++ LV+DEADRIL+ G+E ++ + ++IL + Q ++L S
Sbjct: 257 TPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQ--TMLFS 314
Query: 584 ATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALA 642
AT T V+ LA ++L+ P+ I+ D H+T + L +Q +++ R + L
Sbjct: 315 ATQTTKVEDLARISLRPGPLYINV-DHRKEHSTVEGL------EQGYVICEADKRFLLLF 367
Query: 643 SFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
SF+ +N+ + K++VF ++ + YH ELL+ +
Sbjct: 368 SFLK---RNLKK----KIIVFFSSCNCVKYHAELLNYI 398
Score = 334 (122.6 bits), Expect = 4.5e-61, Sum P(3) = 4.5e-61
Identities = 80/208 (38%), Positives = 120/208 (57%)
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
Q++L SAT T V+ LA ++L+ D H+T + L +Q +++ R
Sbjct: 309 QTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGL------EQGYVICEADKR 362
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
+ L SF+ +N+ + K++VF ++ + YH ELL+ + ++ LHG Q
Sbjct: 363 FLLLFSFLK---RNLKK----KIIVFFSSCNCVKYHAELLNYI---DLPVLDLHGKQKQQ 412
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH- 756
+RT F F + K GVLICTDVAARGLD+P VDWI+Q+ P + DY+HRVGRTAR +
Sbjct: 413 KRTNTFFEFCNAKQGVLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANG 472
Query: 757 EGSSLLFLIPSEVKLVEELQNRRIRIEE 784
G SL+FL PSEV ++ L+ R+ + E
Sbjct: 473 RGRSLMFLQPSEVGFLKYLKEARVPVVE 500
Score = 324 (119.1 bits), Expect = 4.5e-61, Sum P(3) = 4.5e-61
Identities = 71/178 (39%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M +T +QQ +I P+L G DVL ++TGSGKTLA+ IP I+ L +R K ++G
Sbjct: 146 MGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFK--PRNGTGV 203
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELALQ + +L + + + GG ++E ++ KG+++L+ATPGRLL
Sbjct: 204 IVVSPTRELALQIFGVARELLTAHSQTY-GIVIGGANRRAEAEKLTKGVNLLIATPGRLL 262
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T F ++ LV+DEADRIL+ G+E ++ + ++IL + Q ++L SAT T
Sbjct: 263 DHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQ--TMLFSATQT 318
Score = 154 (59.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 45/147 (30%), Positives = 83/147 (56%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T F ++ LV+DEADRIL+ G+E ++ + ++IL + Q ++L SAT T V+
Sbjct: 266 QNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQ--TMLFSATQTTKVED 323
Query: 245 LAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ I+ D H+T + L +Q +++ R + L SF+ +N
Sbjct: 324 LARISLRPGPLYINV-DHRKEHSTVEGL------EQGYVICEADKRFLLLFSFLK---RN 373
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
+ + K++VF ++ + YH ELL+
Sbjct: 374 LKK----KIIVFFSSCNCVKYHAELLN 396
Score = 91 (37.1 bits), Expect = 4.5e-61, Sum P(3) = 4.5e-61
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + Q L+ SA GY S+++ YAS+S LR +F+ ++ L AKSF
Sbjct: 511 VQSQLEKLISQNYYLNKSAKDGYRSYLQAYASHS--LRSVFDVHKLDLVKVAKSFGFSTP 568
Query: 878 PSVISGIG 885
P + +G
Sbjct: 569 PRIDIQLG 576
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 403 (146.9 bits), Expect = 7.2e-39, Sum P(2) = 7.2e-39
Identities = 113/337 (33%), Positives = 186/337 (55%)
Query: 345 PDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKK 404
PD E ++ E + N+ + NV + L E++ + P I KK
Sbjct: 78 PDQEEEDQEEEEQEQEEEENENNDNNTGNVSEKELGISKESI----EFSNLP-IEENTKK 132
Query: 405 NLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK 464
++ E M ++T +Q SI P+L+G D+L ++TGSGKTLA+ IP I+ L ++ +
Sbjct: 133 SIEE-MGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVL--VKSNFKPR 189
Query: 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
+G +II PTRELALQ + +L K T + GG K E+ R+ KG+++LVAT
Sbjct: 190 NGTGVIIISPTRELALQIYGVARELMKYHTQ-THGIVIGGASKKPEEERLEKGVNLLVAT 248
Query: 525 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584
PGRLLDH ++T+ ++ L++DEADRIL+ G+E E +I+KK Q++L SA
Sbjct: 249 PGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEE---EMHQIIKKVPKTRQTMLFSA 305
Query: 585 TLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALAS 643
T T V +A ++L N P+ + D +I S V + L+Q ++V P + R + L +
Sbjct: 306 TQTRKVDDIAKVSLNNSPVYVGVDDEREI-----STV--EGLEQGYVVCPSERRFLLLYT 358
Query: 644 FILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
F+ +N+++ K++VF+++ + Y ELL+ +
Sbjct: 359 FLK---KNLSK----KIIVFLSSCNAVKYTAELLNYI 388
Score = 342 (125.4 bits), Expect = 5.9e-61, Sum P(3) = 5.9e-61
Identities = 83/232 (35%), Positives = 134/232 (57%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+KK Q++L SAT T V +A ++L N D +T + L
Sbjct: 286 EMHQIIKKVPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGL----- 340
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
+Q ++V P + R + L +F+ +N+++ K++VF+++ + Y ELL+ + +
Sbjct: 341 -EQGYVVCPSERRFLLLYTFLK---KNLSK----KIIVFLSSCNAVKYTAELLNYI---D 389
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
I +LHG Q +RT F F + + G+LICTDVAARGLD+P VDWI+QY P +Y
Sbjct: 390 IPVLELHGRQKQQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEY 449
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKL-KDCLQNL 794
+HRVGRTAR VG +G +LLFL+P E+ ++ L+ ++ + E + K + N+
Sbjct: 450 IHRVGRTARGVGKKGRALLFLLPKELGFLKYLKLAKVPLNEYEFPKSKIANV 501
Score = 323 (118.8 bits), Expect = 5.9e-61, Sum P(3) = 5.9e-61
Identities = 75/178 (42%), Positives = 111/178 (62%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M ++T +Q SI P+L+G D+L ++TGSGKTLA+ IP I+ L ++ ++G
Sbjct: 137 MGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVL--VKSNFKPRNGTGV 194
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+II PTRELALQ + +L K T + GG K E+ R+ KG+++LVATPGRLL
Sbjct: 195 IIISPTRELALQIYGVARELMKYHTQ-THGIVIGGASKKPEEERLEKGVNLLVATPGRLL 253
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T+ ++ L++DEADRIL+ G+E E +I+KK Q++L SAT T
Sbjct: 254 DHLQNTKGFITKNLKCLIIDEADRILEVGFEE---EMHQIIKKVPKTRQTMLFSATQT 308
Score = 145 (56.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 44/134 (32%), Positives = 77/134 (57%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN-PIQI 256
L++DEADRIL+ G+E E +I+KK Q++L SAT T V +A ++L N P+ +
Sbjct: 270 LIIDEADRILEVGFEE---EMHQIIKKVPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYV 326
Query: 257 DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFM 316
D +I S V + L+Q ++V P + R + L +F+ +N+++ K++VF+
Sbjct: 327 GVDDEREI-----STV--EGLEQGYVVCPSERRFLLLYTFLK---KNLSK----KIIVFL 372
Query: 317 ATQDMADYHTELLS 330
++ + Y ELL+
Sbjct: 373 SSCNAVKYTAELLN 386
Score = 81 (33.6 bits), Expect = 5.9e-61, Sum P(3) = 5.9e-61
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E V Q L+ SA Y +++ YAS+S L+ IF+ + L AK+F D
Sbjct: 501 VQDQLEKVVSQNFYLYNSARDAYKAYICAYASHS--LKDIFDVNALDLQCVAKAFGFLDP 558
Query: 878 PSV 880
P V
Sbjct: 559 PKV 561
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 589 (212.4 bits), Expect = 6.6e-61, Sum P(2) = 6.6e-61
Identities = 145/408 (35%), Positives = 233/408 (57%)
Query: 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM 457
+HP + L E + +T VQ +I + DV + TGSGKTLA+ IPI++ L
Sbjct: 16 LHPLVLGALRE-LGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRR 74
Query: 458 RPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARI 514
K+ +K+ + A++I PTRELA+Q E+ FTK F+ I+ W+ GG + R
Sbjct: 75 EEKL-KKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQIL--WI-GGRNPGEDVERF 130
Query: 515 RK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLE 568
++ G +I+VATPGRL D + E L + ++ LVLDEADR+LD G+E I LE
Sbjct: 131 KQHGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINTILE 190
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
L KQ+ ++ L SAT T V+ L L+NP++I + ++T P L+ H
Sbjct: 191 FLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKT--PSRLENH 245
Query: 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688
+++ + L F+ + ++ K LVF +T +Y+ + L ++ + +
Sbjct: 246 YMICKADEKFNQLVHFLRSR-------QQEKHLVFFSTCACVEYYGKALEALV-QRVKIL 297
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748
+HG M +R ++F FR ++SG+L+CTDV ARG+D+P V+W++QY PS+++ +VHR
Sbjct: 298 CIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRC 356
Query: 749 GRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIKLKDCLQNLL 795
GRTAR+GH GS+L+FL+P E + L N++ ++E+ L+ +LL
Sbjct: 357 GRTARIGHGGSALVFLLPMEEAYINFLAINQKCPLQEMSLQRNTVDLL 404
Score = 263 (97.6 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 74/187 (39%), Positives = 107/187 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ +T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K+ + A
Sbjct: 27 LGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKNQVGA 85
Query: 61 VIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATP 116
++I PTRELA+Q E+ FTK F+ I+ W+ GG + R ++ G +I+VATP
Sbjct: 86 IVITPTRELAIQIDEVLSHFTKHFPQFSQIL--WI-GGRNPGEDVERFKQHGGNIIVATP 142
Query: 117 GRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSI 171
GRL D + E L + ++ LVLDEADR+LD G+E I LE L KQ+ ++
Sbjct: 143 GRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQR---RTG 199
Query: 172 LLSATLT 178
L SAT T
Sbjct: 200 LFSATQT 206
Score = 152 (58.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 42/132 (31%), Positives = 67/132 (50%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID 257
LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP++I
Sbjct: 168 LVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRIS 224
Query: 258 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317
+ ++T P L+ H+++ + L F+ + ++ K LVF +
Sbjct: 225 VKEKGVAASSTQKT--PSRLENHYMICKADEKFNQLVHFLRSR-------QQEKHLVFFS 275
Query: 318 TQDMADYHTELL 329
T +Y+ + L
Sbjct: 276 TCACVEYYGKAL 287
Score = 62 (26.9 bits), Expect = 6.6e-61, Sum P(2) = 6.6e-61
Identities = 19/94 (20%), Positives = 39/94 (41%)
Query: 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWV 844
+ +++ N L++ + L ++ ++ L + L + + K + S+V
Sbjct: 373 LPMEEAYINFLAINQKCPLQEMS---LQRNTVDLLPKLRAMALADRAVFEKGMKAFVSFV 429
Query: 845 RFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAP 878
+ YA + L IF K + A+ FAL P
Sbjct: 430 QAYAKHECSL--IFRLKDLDFAGLARGFALLRMP 461
Score = 38 (18.4 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 276 SLKQHFIVTPPKLRLVALA 294
SL+++ + PKLR +ALA
Sbjct: 395 SLQRNTVDLLPKLRAMALA 413
Score = 38 (18.4 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 624 SLKQHFIVTPPKLRLVALA 642
SL+++ + PKLR +ALA
Sbjct: 395 SLQRNTVDLLPKLRAMALA 413
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 404 (147.3 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 104/336 (30%), Positives = 186/336 (55%)
Query: 346 DNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKN 405
D+ + P++TE ++ ++P++P + FA S + ++ +
Sbjct: 137 DSAQAPEETENSMEKPDK--DDDTEVPSLPLGLTGAFEDTSFA--SLTDL--VNENTLRA 190
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465
+ E M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++
Sbjct: 191 IKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR--FMPRN 247
Query: 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATP 525
G +I+ PTRELA+QT + +L + GG +E ++ GI+I+VATP
Sbjct: 248 GTGVLILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVATP 306
Query: 526 GRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585
GRLLDH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT
Sbjct: 307 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSAT 363
Query: 586 LTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644
T V+ LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F
Sbjct: 364 QTRKVEDLARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTF 416
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
+ ++ + K++VF ++ YH ELL+ +
Sbjct: 417 L-------KKNRKKKLMVFFSSCKSVKYHYELLNYI 445
Score = 331 (121.6 bits), Expect = 9.7e-61, Sum P(3) = 9.7e-61
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++G
Sbjct: 194 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR--FMPRNGTGV 251
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 252 LILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVATPGRLL 310
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 311 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQT 365
Score = 327 (120.2 bits), Expect = 9.7e-61, Sum P(3) = 9.7e-61
Identities = 79/223 (35%), Positives = 124/223 (55%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D D N T D
Sbjct: 343 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDD-DKANAT-----VDG 396
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 397 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCKSVKYHYELLNYI---D 446
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 447 LPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 506
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+HRVGRTAR + G +LL L P E+ + L+ ++ + E +
Sbjct: 507 IHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFE 549
Score = 166 (63.5 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 45/147 (30%), Positives = 83/147 (56%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 314 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTRKVED 370
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F+
Sbjct: 371 LARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTFL------ 417
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 418 -KKNRKKKLMVFFSSCKSVKYHYELLN 443
Score = 92 (37.4 bits), Expect = 9.7e-61, Sum P(3) = 9.7e-61
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 558 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 615
Query: 878 PSV 880
P V
Sbjct: 616 PFV 618
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 409 (149.0 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
Identities = 106/337 (31%), Positives = 190/337 (56%)
Query: 346 DNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPG-IHPFMKK 404
D + P++TE + +++ ++P++P ++ A F TS++ ++ K
Sbjct: 139 DGAQAPEETENRVEKPDDEGEDS-EVPSLPLG----LTGA-FEDTSFDSLTNLVNENTLK 192
Query: 405 NLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK 464
+ E M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++ K +
Sbjct: 193 AIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL--KFMPR 249
Query: 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
+G +I+ PTRELA+QT + +L + GG +E ++ GI+I+VAT
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVAT 308
Query: 525 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584
PGRLLDH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SA
Sbjct: 309 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSA 365
Query: 585 TLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALAS 643
T T V+ LA ++L+ P+ + D D N T D L+Q ++V P + R + L +
Sbjct: 366 TQTRKVEDLARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFT 418
Query: 644 FILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
F+ ++ + K++VF ++ YH ELL+ +
Sbjct: 419 FL-------KKNRKKKLMVFFSSCKSVKYHYELLNYI 448
Score = 331 (121.6 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++ K ++G
Sbjct: 197 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL--KFMPRNGTGV 254
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 255 LILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVATPGRLL 313
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 314 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQT 368
Score = 327 (120.2 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
Identities = 79/223 (35%), Positives = 124/223 (55%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D D N T D
Sbjct: 346 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDD-DKANAT-----VDG 399
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 400 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCKSVKYHYELLNYI---D 449
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 450 LPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 509
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+HRVGRTAR + G +LL L P E+ + L+ ++ + E +
Sbjct: 510 IHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFE 552
Score = 166 (63.5 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 45/147 (30%), Positives = 83/147 (56%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 317 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTRKVED 373
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F+
Sbjct: 374 LARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTFL------ 420
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 421 -KKNRKKKLMVFFSSCKSVKYHYELLN 446
Score = 92 (37.4 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 561 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 618
Query: 878 PSV 880
P V
Sbjct: 619 PFV 621
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 404 (147.3 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 104/336 (30%), Positives = 186/336 (55%)
Query: 346 DNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKN 405
D+ + P++TE ++ ++P++P + FA S + ++ +
Sbjct: 141 DSAQAPEETENSMEKPDK--DDDTEVPSLPLGLTGAFEDTSFA--SLTDL--VNENTLRA 194
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465
+ E M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++
Sbjct: 195 IKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR--FMPRN 251
Query: 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATP 525
G +I+ PTRELA+QT + +L + GG +E ++ GI+I+VATP
Sbjct: 252 GTGVLILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVATP 310
Query: 526 GRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585
GRLLDH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT
Sbjct: 311 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSAT 367
Query: 586 LTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644
T V+ LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F
Sbjct: 368 QTRKVEDLARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTF 420
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
+ ++ + K++VF ++ YH ELL+ +
Sbjct: 421 L-------KKNRKKKLMVFFSSCKSVKYHYELLNYI 449
Score = 331 (121.6 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++G
Sbjct: 198 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR--FMPRNGTGV 255
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 256 LILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVATPGRLL 314
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 315 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQT 369
Score = 327 (120.2 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
Identities = 79/223 (35%), Positives = 124/223 (55%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D D N T D
Sbjct: 347 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDD-DKANAT-----VDG 400
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 401 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCKSVKYHYELLNYI---D 450
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 451 LPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 510
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+HRVGRTAR + G +LL L P E+ + L+ ++ + E +
Sbjct: 511 IHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFE 553
Score = 166 (63.5 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 45/147 (30%), Positives = 83/147 (56%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 318 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTRKVED 374
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F+
Sbjct: 375 LARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTFL------ 421
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 422 -KKNRKKKLMVFFSSCKSVKYHYELLN 447
Score = 92 (37.4 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 562 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 619
Query: 878 PSV 880
P V
Sbjct: 620 PFV 622
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 409 (149.0 bits), Expect = 5.2e-40, Sum P(2) = 5.2e-40
Identities = 106/337 (31%), Positives = 190/337 (56%)
Query: 346 DNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPG-IHPFMKK 404
D + P++TE + +++ ++P++P ++ A F TS++ ++ K
Sbjct: 143 DGAQAPEETENRVEKPDDEGEDS-EVPSLPLG----LTGA-FEDTSFDSLTNLVNENTLK 196
Query: 405 NLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK 464
+ E M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++ K +
Sbjct: 197 AIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL--KFMPR 253
Query: 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
+G +I+ PTRELA+QT + +L + GG +E ++ GI+I+VAT
Sbjct: 254 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVAT 312
Query: 525 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584
PGRLLDH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SA
Sbjct: 313 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSA 369
Query: 585 TLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALAS 643
T T V+ LA ++L+ P+ + D D N T D L+Q ++V P + R + L +
Sbjct: 370 TQTRKVEDLARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFT 422
Query: 644 FILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
F+ ++ + K++VF ++ YH ELL+ +
Sbjct: 423 FL-------KKNRKKKLMVFFSSCKSVKYHYELLNYI 452
Score = 331 (121.6 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++ K ++G
Sbjct: 201 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL--KFMPRNGTGV 258
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 259 LILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVATPGRLL 317
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 318 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQT 372
Score = 327 (120.2 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 79/223 (35%), Positives = 124/223 (55%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D D N T D
Sbjct: 350 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDD-DKANAT-----VDG 403
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 404 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCKSVKYHYELLNYI---D 453
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 454 LPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 513
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+HRVGRTAR + G +LL L P E+ + L+ ++ + E +
Sbjct: 514 IHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFE 556
Score = 166 (63.5 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 45/147 (30%), Positives = 83/147 (56%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 321 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTRKVED 377
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F+
Sbjct: 378 LARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTFL------ 424
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 425 -KKNRKKKLMVFFSSCKSVKYHYELLN 450
Score = 92 (37.4 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 565 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 622
Query: 878 PSV 880
P V
Sbjct: 623 PFV 625
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 588 (212.0 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 144/401 (35%), Positives = 230/401 (57%)
Query: 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM 457
+HP + L E + +T VQ +I + DV + TGSGKTLA+ IPI++ L
Sbjct: 16 LHPRVLGALRE-LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRR 74
Query: 458 RPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARI 514
K+ +K+ + A++I PTRELA+Q E+ FTK F+ I+ W+ GG + R
Sbjct: 75 EEKL-KKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQIL--WI-GGRNPGEDVERF 130
Query: 515 RK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLE 568
++ G +I+VATPGRL D + E L + ++ LVLDEADR+LD G+E I LE
Sbjct: 131 KQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILE 190
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
L KQ+ ++ L SAT T V+ L L+NP++I + ++T P L+ H
Sbjct: 191 FLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKT--PSRLENH 245
Query: 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688
+++ + L F+ + ++ K LVF +T +Y+ + L +L + +
Sbjct: 246 YMICKADEKFNQLVHFLRSR-------QQEKHLVFFSTCACVEYYGKALEALL-KKVKIL 297
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748
+HG M +R ++F FR ++SG+L+CTDV ARG+D+P V+W++QY PS+++ +VHR
Sbjct: 298 CIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRC 356
Query: 749 GRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIKLK 788
GRTAR+GH GS+L+FL+P E + L N++ ++E+ L+
Sbjct: 357 GRTARIGHGGSALVFLLPMEEAYINFLAINQKCPLQEMSLQ 397
Score = 264 (98.0 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 74/187 (39%), Positives = 107/187 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ +T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K+ + A
Sbjct: 27 LGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKNQVGA 85
Query: 61 VIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATP 116
++I PTRELA+Q E+ FTK F+ I+ W+ GG + R ++ G +I+VATP
Sbjct: 86 IVITPTRELAIQIDEVLSHFTKHFPQFSQIL--WI-GGRNPGEDVERFKQHGGNIIVATP 142
Query: 117 GRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSI 171
GRL D + E L + ++ LVLDEADR+LD G+E I LE L KQ+ ++
Sbjct: 143 GRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQR---RTG 199
Query: 172 LLSATLT 178
L SAT T
Sbjct: 200 LFSATQT 206
Score = 152 (58.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 42/132 (31%), Positives = 67/132 (50%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID 257
LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP++I
Sbjct: 168 LVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRIS 224
Query: 258 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317
+ ++T P L+ H+++ + L F+ + ++ K LVF +
Sbjct: 225 VKEKGVAASSTQKT--PSRLENHYMICKADEKFNQLVHFLRSR-------QQEKHLVFFS 275
Query: 318 TQDMADYHTELL 329
T +Y+ + L
Sbjct: 276 TCACVEYYGKAL 287
Score = 61 (26.5 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 19/94 (20%), Positives = 39/94 (41%)
Query: 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWV 844
+ +++ N L++ + L ++ ++ L + L + + K + S+V
Sbjct: 373 LPMEEAYINFLAINQKCPLQEMS---LQRNTIDLLPKLRAMALADRAVFEKGMKAFVSFV 429
Query: 845 RFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAP 878
+ YA + L IF K + A+ FAL P
Sbjct: 430 QAYAKHECSL--IFRLKDLDFAGLARGFALLRMP 461
Score = 39 (18.8 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 276 SLKQHFIVTPPKLRLVALA 294
SL+++ I PKLR +ALA
Sbjct: 395 SLQRNTIDLLPKLRAMALA 413
Score = 39 (18.8 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 624 SLKQHFIVTPPKLRLVALA 642
SL+++ I PKLR +ALA
Sbjct: 395 SLQRNTIDLLPKLRAMALA 413
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 409 (149.0 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 105/333 (31%), Positives = 185/333 (55%)
Query: 349 EIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNE 408
+ P++TE +G + + ++P++P + FA S ++ K + E
Sbjct: 141 QAPEETE-NNGEKPDDEEEDSEVPSLPLGLTGAFEDTSFASLSSL----VNENTLKAIKE 195
Query: 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++ K ++G
Sbjct: 196 -MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL--KFMPRNGTG 252
Query: 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 528
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRL
Sbjct: 253 VLILSPTRELAMQTFGVLKELMMYHVHTY-GLIMGGSNRSAEAQKLGNGINIIVATPGRL 311
Query: 529 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588
LDH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 312 LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTR 368
Query: 589 AVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILG 647
V+ LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F+
Sbjct: 369 KVEDLARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTFL-- 419
Query: 648 KCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
++ + K++VF ++ YH ELL+ +
Sbjct: 420 -----KKNRKKKLMVFFSSCKSVKYHYELLNYI 447
Score = 330 (121.2 bits), Expect = 1.3e-60, Sum P(3) = 1.3e-60
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++ K ++G
Sbjct: 196 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL--KFMPRNGTGV 253
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 254 LILSPTRELAMQTFGVLKELMMYHVHTY-GLIMGGSNRSAEAQKLGNGINIIVATPGRLL 312
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 313 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQT 367
Score = 327 (120.2 bits), Expect = 1.3e-60, Sum P(3) = 1.3e-60
Identities = 79/223 (35%), Positives = 124/223 (55%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D D N T D
Sbjct: 345 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDD-DKANAT-----VDG 398
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 399 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCKSVKYHYELLNYI---D 448
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 449 LPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 508
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+HRVGRTAR + G +LL L P E+ + L+ ++ + E +
Sbjct: 509 IHRVGRTARGLNGRGHALLILHPEELGFLRYLKQSKVPLSEFE 551
Score = 166 (63.5 bits), Expect = 6.3e-13, Sum P(2) = 6.3e-13
Identities = 45/147 (30%), Positives = 83/147 (56%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 316 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTRKVED 372
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F+
Sbjct: 373 LARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTFL------ 419
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 420 -KKNRKKKLMVFFSSCKSVKYHYELLN 445
Score = 92 (37.4 bits), Expect = 1.3e-60, Sum P(3) = 1.3e-60
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 560 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 617
Query: 878 PSV 880
P V
Sbjct: 618 PFV 620
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 404 (147.3 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 104/336 (30%), Positives = 186/336 (55%)
Query: 346 DNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKN 405
D+ + P++TE ++ ++P++P + FA S + ++ +
Sbjct: 166 DSAQAPEETENSMEKPDK--DDDTEVPSLPLGLTGAFEDTSFA--SLTDL--VNENTLRA 219
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465
+ E M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++
Sbjct: 220 IKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR--FMPRN 276
Query: 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATP 525
G +I+ PTRELA+QT + +L + GG +E ++ GI+I+VATP
Sbjct: 277 GTGVLILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVATP 335
Query: 526 GRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585
GRLLDH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT
Sbjct: 336 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSAT 392
Query: 586 LTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644
T V+ LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F
Sbjct: 393 QTRKVEDLARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTF 445
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
+ ++ + K++VF ++ YH ELL+ +
Sbjct: 446 L-------KKNRKKKLMVFFSSCKSVKYHYELLNYI 474
Score = 331 (121.6 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++G
Sbjct: 223 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR--FMPRNGTGV 280
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 281 LILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGINIVVATPGRLL 339
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 340 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQT 394
Score = 327 (120.2 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 79/223 (35%), Positives = 124/223 (55%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D D N T D
Sbjct: 372 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDD-DKANAT-----VDG 425
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 426 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCKSVKYHYELLNYI---D 475
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 476 LPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 535
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+HRVGRTAR + G +LL L P E+ + L+ ++ + E +
Sbjct: 536 IHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFE 578
Score = 166 (63.5 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 45/147 (30%), Positives = 83/147 (56%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 343 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTRKVED 399
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F+
Sbjct: 400 LARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTFL------ 446
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 447 -KKNRKKKLMVFFSSCKSVKYHYELLN 472
Score = 92 (37.4 bits), Expect = 1.4e-60, Sum P(3) = 1.4e-60
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 587 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 644
Query: 878 PSV 880
P V
Sbjct: 645 PFV 647
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 582 (209.9 bits), Expect = 1.6e-60, Sum P(2) = 1.6e-60
Identities = 149/407 (36%), Positives = 231/407 (56%)
Query: 391 SYEEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
S+E P +HP + L E + +T VQ +I + DV + TGSGKTLA+ IP
Sbjct: 8 SWESLPVPLHPQVLGALRE-LGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIP 66
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEK 506
I++ L K+ +K + A+II PTRELA+Q E+ FTK F+ I+ W+ GG
Sbjct: 67 ILEILLRREEKL-KKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQIL--WI-GGRN 122
Query: 507 MKSEKARIRK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYE 560
+ R ++ G +I+VATPGRL D + E L + ++ LVLDEADR+LD G+E
Sbjct: 123 PGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFE 182
Query: 561 RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620
I LE L KQ+ ++ L SAT T V+ L L+NP+++ + ++
Sbjct: 183 ASINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKT- 238
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
P L+ +++V + L F+ N +E K LVF +T +Y+ + L V
Sbjct: 239 -PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLVFFSTCACVEYYGKALE-V 289
Query: 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
L + + +HG M +R ++F FR ++SG+L+CTDV ARG+D+P V+W++QY PS+
Sbjct: 290 LVKGVKIMCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSN 348
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIK 786
++ +VHR GRTAR+GH GS+L+FL+P E + L N++ ++E+K
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMK 395
Score = 262 (97.3 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 75/182 (41%), Positives = 105/182 (57%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K + A+II P
Sbjct: 32 MTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKSQVGAIIITP 90
Query: 66 TRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLD 121
TRELA+Q E+ FTK F+ I+ W+ GG + R ++ G +I+VATPGRL D
Sbjct: 91 TRELAIQIDEVLSHFTKHFPEFSQIL--WI-GGRNPGEDVERFKQQGGNIIVATPGRLED 147
Query: 122 HCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ E L + ++ LVLDEADR+LD G+E I LE L KQ+ ++ L SAT
Sbjct: 148 MFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSAT 204
Query: 177 LT 178
T
Sbjct: 205 QT 206
Score = 140 (54.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 42/132 (31%), Positives = 66/132 (50%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID 257
LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP+++
Sbjct: 168 LVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRVS 224
Query: 258 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317
+ ++ P L+ +++V + L F+ N +E K LVF +
Sbjct: 225 VKEKGVAASSAQKT--PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLVFFS 275
Query: 318 TQDMADYHTELL 329
T +Y+ + L
Sbjct: 276 TCACVEYYGKAL 287
Score = 66 (28.3 bits), Expect = 1.6e-60, Sum P(2) = 1.6e-60
Identities = 22/96 (22%), Positives = 41/96 (42%)
Query: 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWV 844
+ +++ N L++ + L + TA L +S L + + K + S+V
Sbjct: 373 LPMEESYINFLAINQKCPLQEMKPQR-NTAD--LLPKLKSMALADRAVFEKGMKAFVSYV 429
Query: 845 RFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+ YA + +L IF K + A+ FAL P +
Sbjct: 430 QAYAKHECNL--IFRLKDLDFASLARGFALLRMPKM 463
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 405 (147.6 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 105/334 (31%), Positives = 185/334 (55%)
Query: 353 KTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEE--FPGIHPFMKKNLNEG- 409
K+E +S + +NN + P+ + S L ++E+ F + + +N +
Sbjct: 135 KSEEESAETTKETENNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAI 194
Query: 410 --MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++G
Sbjct: 195 KEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR--FMPRNGT 252
Query: 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 527
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGR
Sbjct: 253 GVLILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLGNGINIIVATPGR 311
Query: 528 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587
LLDH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 312 LLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQT 368
Query: 588 PAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFIL 646
V+ LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F+
Sbjct: 369 RKVEDLARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTFL- 420
Query: 647 GKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
++ + K++VF ++ YH ELL+ +
Sbjct: 421 ------KKNRKKKLMVFFSSCMSVKYHYELLNYI 448
Score = 331 (121.6 bits), Expect = 2.6e-60, Sum P(3) = 2.6e-60
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++R ++G
Sbjct: 197 MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR--FMPRNGTGV 254
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 255 LILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLGNGINIIVATPGRLL 313
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 314 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQT 368
Score = 323 (118.8 bits), Expect = 2.6e-60, Sum P(3) = 2.6e-60
Identities = 87/263 (33%), Positives = 141/263 (53%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D D N T D
Sbjct: 346 ELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDD-DKANAT-----VDG 399
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 400 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCMSVKYHYELLNYI---D 449
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 450 LPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 509
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDL 803
+HRVGRTAR + G +LL L P E+ + L+ ++ + E D + +S ++ L
Sbjct: 510 IHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEF---DFSWSKIS-DIQSQL 565
Query: 804 SRLADGNVETAATALQMSFESAV 826
+L + N +A Q +++S +
Sbjct: 566 EKLIEKNYFLHKSA-QEAYKSYI 587
Score = 164 (62.8 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 45/147 (30%), Positives = 83/147 (56%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 317 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR---QTMLFSATQTRKVED 373
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D D N T D L+Q ++V P + R + L +F+
Sbjct: 374 LARISLKKEPLYVGVDD--DKANAT-----VDGLEQGYVVCPSEKRFLLLFTFL------ 420
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 421 -KKNRKKKLMVFFSSCMSVKYHYELLN 446
Score = 92 (37.4 bits), Expect = 2.6e-60, Sum P(3) = 2.6e-60
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 561 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 618
Query: 878 PSV 880
P V
Sbjct: 619 PFV 621
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 386 (140.9 bits), Expect = 4.8e-39, Sum P(2) = 4.8e-39
Identities = 112/342 (32%), Positives = 187/342 (54%)
Query: 344 DPDNYEIPKKTEVKSGPISSLFQNNP-DIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFM 402
D D+YE ++ E S ++ D N R K V+ + + E+F + +
Sbjct: 39 DEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQ--L 96
Query: 403 KKNLNEG---MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP 459
+N+ + M +T +Q+ SI P+L G DVL ++TGSGKTLA+ IP I+ L +
Sbjct: 97 SENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYAL-- 154
Query: 460 KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS 519
K ++G +II PTRELALQ + +L K + + GG ++E ++ KG++
Sbjct: 155 KFKPRNGTGVIIISPTRELALQIFGVAKELLK-YHHQTFGIVIGGANRRAEADKLVKGVN 213
Query: 520 ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS 579
+LVATPGRLLDH ++T+ F + LV+DEADRIL+ G+E ++ + ++IL + Q +
Sbjct: 214 LLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQ--T 271
Query: 580 ILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRL 638
+L SAT T V+ LA ++L+ P+ ++ DS +T + L +Q ++V R
Sbjct: 272 LLFSATQTTKVEDLARISLKPGPLYVNV-DSGKPTSTVEGL------EQGYVVVDSDKRF 324
Query: 639 VALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
+ L SF+ +N+ + K++VFM++ Y ELL+ +
Sbjct: 325 LLLFSFLK---RNLKK----KVIVFMSSCASVKYMAELLNYI 359
Score = 324 (119.1 bits), Expect = 7.7e-60, Sum P(3) = 7.7e-60
Identities = 74/178 (41%), Positives = 112/178 (62%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M +T +Q+ SI P+L G DVL ++TGSGKTLA+ IP I+ L + K ++G
Sbjct: 107 MGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYAL--KFKPRNGTGV 164
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+II PTRELALQ + +L K + + GG ++E ++ KG+++LVATPGRLL
Sbjct: 165 IIISPTRELALQIFGVAKELLK-YHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLL 223
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T+ F + LV+DEADRIL+ G+E ++ + ++IL + Q ++L SAT T
Sbjct: 224 DHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQ--TLLFSATQT 279
Score = 312 (114.9 bits), Expect = 7.7e-60, Sum P(3) = 7.7e-60
Identities = 78/211 (36%), Positives = 122/211 (57%)
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
Q++L SAT T V+ LA ++L+ P + + D T ++ + L+Q ++V R
Sbjct: 270 QTLLFSATQTTKVEDLARISLK-PGPLYV--NVDSGKPTSTV---EGLEQGYVVVDSDKR 323
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
+ L SF+ +N+ + K++VFM++ Y ELL+ + ++ LHG Q
Sbjct: 324 FLLLFSFLK---RNLKK----KVIVFMSSCASVKYMAELLNYI---DLPVLDLHGKQKQQ 373
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757
RT F F + + G+L+CT+VAARGLD+P VDWIVQY P DY+HRVGRTAR G +
Sbjct: 374 RRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTK 432
Query: 758 GS--SLLFLIPSEVKLVEELQNRRIRIEEIK 786
G+ SL+FL PSE+ + L+ ++ + E +
Sbjct: 433 GTGKSLMFLAPSELGFLRYLKTAKVSLNEFE 463
Score = 142 (55.0 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 45/147 (30%), Positives = 82/147 (55%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ F + LV+DEADRIL+ G+E ++ + ++IL + Q ++L SAT T V+
Sbjct: 227 QNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQ--TLLFSATQTTKVED 284
Query: 245 LAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ ++ DS +T + L +Q ++V R + L SF+ +N
Sbjct: 285 LARISLKPGPLYVNV-DSGKPTSTVEGL------EQGYVVVDSDKRFLLLFSFLK---RN 334
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
+ + K++VFM++ Y ELL+
Sbjct: 335 LKK----KVIVFMSSCASVKYMAELLN 357
Score = 100 (40.3 bits), Expect = 7.7e-60, Sum P(3) = 7.7e-60
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E V + L SA GY S+++ YASYS L+ IF+ ++ L AKSF
Sbjct: 472 VQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYS--LKSIFDINKLDLAKVAKSFGFAHP 529
Query: 878 PSVISGIG 885
P+V IG
Sbjct: 530 PNVNITIG 537
>GENEDB_PFALCIPARUM|MAL7P1.113 [details] [associations]
symbol:MAL7P1.113 "DEAD box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844506 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
InterPro:IPR025313 Pfam:PF13959 KO:K01509 RefSeq:XP_001349115.1
ProteinModelPortal:Q8IBN8 EnsemblProtists:MAL7P1.113:mRNA
GeneID:2654935 KEGG:pfa:MAL7P1.113 EuPathDB:PlasmoDB:PF3D7_0721300
OMA:NDSHNEL ProtClustDB:CLSZ2514714 Uniprot:Q8IBN8
Length = 899
Score = 389 (142.0 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 95/251 (37%), Positives = 148/251 (58%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK--ISRKDGIYAVI 62
++T++Q++SI D+ ++S TGSGKTL YAIP I+K+ M+ K I+R GI+ ++
Sbjct: 195 KMTSIQKMSIPLFFKPNDIFLKSMTGSGKTLCYAIPSIEKILNMKEKVKITRDMGIFVLV 254
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
+ PTRELA+Q +F L K + +IV S +TGGEK KSEK R++KGISIL TPGRLLDH
Sbjct: 255 LSPTRELAIQINNLFCILTKPYPYIVASCITGGEKKKSEKNRLKKGISILTCTPGRLLDH 314
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ-FQSILLSATLTPAT 181
++T++LK + ++ ++LDEAD+I+ G + I ++++K K + F +
Sbjct: 315 LENTKSLKLTFLKMVILDEADKIIYLGTQDKIKLIYDMIRKIKQEEFSKVHKKK------ 368
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
K E + + + + I + + D +F IL K FQ + +SATL A
Sbjct: 369 ---KKEENEVLDHINDTNMSDMNNISND-HSNDYEQF--ILDK----FQMIFISATLNHA 418
Query: 242 VQRLAGMTLQN 252
++ LA L N
Sbjct: 419 MKTLANYCLTN 429
Score = 380 (138.8 bits), Expect = 6.5e-58, Sum P(3) = 6.5e-58
Identities = 100/302 (33%), Positives = 169/302 (55%)
Query: 291 VALASFILGKCQNVNEDEESKMLVFMATQDM-ADYHTELLSTXXXXXXXXEYNIDPDNYE 349
V + + G +N+N+D+++ M ++ DY+ + + + D DN++
Sbjct: 64 VDILGLLKGDSENMNDDDDNNMNDDYNNNNIKGDYNNNNIKDDDVDDDDYDDD-DDDNFD 122
Query: 350 IPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPT-----SYEE-FPGIHPFMK 403
K + SS + N +P+ + ++ F T +Y+ F G +K
Sbjct: 123 ENKNC---NDNCSSKHKRN--VPSKKEHDILELNNINFNETRKKMINYKNIFDGKFCDLK 177
Query: 404 KNLNEGMNIT-------QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
L+E + T ++T++Q++SI D+ ++S TGSGKTL YAIP I+K+
Sbjct: 178 YILSESLINTLEKNEFIKMTSIQKMSIPLFFKPNDIFLKSMTGSGKTLCYAIPSIEKILN 237
Query: 457 MRPK--ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI 514
M+ K I+R GI+ +++ PTRELA+Q +F L K + +IV S +TGGEK KSEK R+
Sbjct: 238 MKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTKPYPYIVASCITGGEKKKSEKNRL 297
Query: 515 RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574
+KGISIL TPGRLLDH ++T++LK + ++ ++LDEAD+I+ G + I ++++K K
Sbjct: 298 KKGISILTCTPGRLLDHLENTKSLKLTFLKMVILDEADKIIYLGTQDKIKLIYDMIRKIK 357
Query: 575 PQ 576
+
Sbjct: 358 QE 359
Score = 290 (107.1 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 75/248 (30%), Positives = 120/248 (48%)
Query: 670 ADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV 729
AD H + L N+ + LHG++S+ +R F F + +L+CTD+ +RG+ +
Sbjct: 657 ADKHKRIY---LFNNVNIYILHGNLSKEDRLGNFMDFSKTNNSILLCTDIISRGIHFDSL 713
Query: 730 DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKD 789
++QY P +Y+H+VGRTAR+ +GS+ LFL+ S+ + + L+N+ I+++ I
Sbjct: 714 SVVIQYDPPQILEEYIHKVGRTARLNKQGSAYLFLLKSQKQFLNILKNKNIQLKIILGNT 773
Query: 790 CLQNLLSVKMEGDLSRLADGNVETAATALQMSFESA-VLQQKILHTSACKGYTSWVRFYA 848
+ + + L + + +Q +S L +K C TS FY+
Sbjct: 774 IINHFKKFCIPNFLKSVGKDILNFLHNHMQTIVKSNNTLMEKGTSAFLCT-ITS---FYS 829
Query: 849 SYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGXXXXXXXXXXXXMAINKEKSFKQ 908
+ SK+LR IFN K IHLGH A +F L P IS + KEK +
Sbjct: 830 T-SKNLRSIFNAKDIHLGHLAYTFLLEKTPKQISKYKKEQNYINIKKQTVLSKKEKRLLK 888
Query: 909 RGNFSKKQ 916
F KKQ
Sbjct: 889 SKQFQKKQ 896
Score = 64 (27.6 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 25/102 (24%), Positives = 46/102 (45%)
Query: 260 DSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319
++ D +N T L P+ LKQ+ I+ K + + L +L C +++ K +VF++
Sbjct: 508 NNDDDNNNTYEL--PEQLKQYCILIDMKQKFICLIYMLLD-CI----EKKKKPVVFLSNH 560
Query: 320 DMADYHTELLSTXXXXXXXXEYNIDPDNYEIPKKTEVKSGPI 361
+Y LL +++ N E+ KK K P+
Sbjct: 561 HSVEYLQILLKNIYWPT-----DVNKKNIEVNKKLNEKITPV 597
Score = 58 (25.5 bits), Expect = 6.2e-59, Sum P(3) = 6.2e-59
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 608 DSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 667
++ D +N T L P+ LKQ+ I+ K + + L +L C +++ K +VF++
Sbjct: 508 NNDDDNNNTYEL--PEQLKQYCILIDMKQKFICLIYMLLD-CI----EKKKKPVVFLSNH 560
Query: 668 DMADYHTELLSTV 680
+Y LL +
Sbjct: 561 HSVEYLQILLKNI 573
Score = 57 (25.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 528 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK--------PQFQS 579
+ D + + +FSKV E + +LD + ++++ I +FQ
Sbjct: 349 IYDMIRKIKQEEFSKVHKKKKKEENEVLDHINDTNMSDMNNISNDHSNDYEQFILDKFQM 408
Query: 580 ILLSATLTPAVQRLAGMTLQN 600
I +SATL A++ LA L N
Sbjct: 409 IFISATLNHAMKTLANYCLTN 429
Score = 40 (19.1 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 639 VALASFILGKCQNVNEDEESKM 660
V + + G +N+N+D+++ M
Sbjct: 64 VDILGLLKGDSENMNDDDDNNM 85
Score = 39 (18.8 bits), Expect = 9.2e-22, Sum P(3) = 9.2e-22
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 393 EEFPGIHPFMKKNLNEGMNITQVTTVQQLS 422
EEF +H KK NE ++ T + ++
Sbjct: 359 EEFSKVHKKKKKEENEVLDHINDTNMSDMN 388
>UNIPROTKB|Q8IBN8 [details] [associations]
symbol:MAL7P1.113 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844506 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
InterPro:IPR025313 Pfam:PF13959 KO:K01509 RefSeq:XP_001349115.1
ProteinModelPortal:Q8IBN8 EnsemblProtists:MAL7P1.113:mRNA
GeneID:2654935 KEGG:pfa:MAL7P1.113 EuPathDB:PlasmoDB:PF3D7_0721300
OMA:NDSHNEL ProtClustDB:CLSZ2514714 Uniprot:Q8IBN8
Length = 899
Score = 389 (142.0 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 95/251 (37%), Positives = 148/251 (58%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK--ISRKDGIYAVI 62
++T++Q++SI D+ ++S TGSGKTL YAIP I+K+ M+ K I+R GI+ ++
Sbjct: 195 KMTSIQKMSIPLFFKPNDIFLKSMTGSGKTLCYAIPSIEKILNMKEKVKITRDMGIFVLV 254
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
+ PTRELA+Q +F L K + +IV S +TGGEK KSEK R++KGISIL TPGRLLDH
Sbjct: 255 LSPTRELAIQINNLFCILTKPYPYIVASCITGGEKKKSEKNRLKKGISILTCTPGRLLDH 314
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ-FQSILLSATLTPAT 181
++T++LK + ++ ++LDEAD+I+ G + I ++++K K + F +
Sbjct: 315 LENTKSLKLTFLKMVILDEADKIIYLGTQDKIKLIYDMIRKIKQEEFSKVHKKK------ 368
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
K E + + + + I + + D +F IL K FQ + +SATL A
Sbjct: 369 ---KKEENEVLDHINDTNMSDMNNISND-HSNDYEQF--ILDK----FQMIFISATLNHA 418
Query: 242 VQRLAGMTLQN 252
++ LA L N
Sbjct: 419 MKTLANYCLTN 429
Score = 380 (138.8 bits), Expect = 6.5e-58, Sum P(3) = 6.5e-58
Identities = 100/302 (33%), Positives = 169/302 (55%)
Query: 291 VALASFILGKCQNVNEDEESKMLVFMATQDM-ADYHTELLSTXXXXXXXXEYNIDPDNYE 349
V + + G +N+N+D+++ M ++ DY+ + + + D DN++
Sbjct: 64 VDILGLLKGDSENMNDDDDNNMNDDYNNNNIKGDYNNNNIKDDDVDDDDYDDD-DDDNFD 122
Query: 350 IPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPT-----SYEE-FPGIHPFMK 403
K + SS + N +P+ + ++ F T +Y+ F G +K
Sbjct: 123 ENKNC---NDNCSSKHKRN--VPSKKEHDILELNNINFNETRKKMINYKNIFDGKFCDLK 177
Query: 404 KNLNEGMNIT-------QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
L+E + T ++T++Q++SI D+ ++S TGSGKTL YAIP I+K+
Sbjct: 178 YILSESLINTLEKNEFIKMTSIQKMSIPLFFKPNDIFLKSMTGSGKTLCYAIPSIEKILN 237
Query: 457 MRPK--ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI 514
M+ K I+R GI+ +++ PTRELA+Q +F L K + +IV S +TGGEK KSEK R+
Sbjct: 238 MKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTKPYPYIVASCITGGEKKKSEKNRL 297
Query: 515 RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574
+KGISIL TPGRLLDH ++T++LK + ++ ++LDEAD+I+ G + I ++++K K
Sbjct: 298 KKGISILTCTPGRLLDHLENTKSLKLTFLKMVILDEADKIIYLGTQDKIKLIYDMIRKIK 357
Query: 575 PQ 576
+
Sbjct: 358 QE 359
Score = 290 (107.1 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 75/248 (30%), Positives = 120/248 (48%)
Query: 670 ADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLV 729
AD H + L N+ + LHG++S+ +R F F + +L+CTD+ +RG+ +
Sbjct: 657 ADKHKRIY---LFNNVNIYILHGNLSKEDRLGNFMDFSKTNNSILLCTDIISRGIHFDSL 713
Query: 730 DWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKD 789
++QY P +Y+H+VGRTAR+ +GS+ LFL+ S+ + + L+N+ I+++ I
Sbjct: 714 SVVIQYDPPQILEEYIHKVGRTARLNKQGSAYLFLLKSQKQFLNILKNKNIQLKIILGNT 773
Query: 790 CLQNLLSVKMEGDLSRLADGNVETAATALQMSFESA-VLQQKILHTSACKGYTSWVRFYA 848
+ + + L + + +Q +S L +K C TS FY+
Sbjct: 774 IINHFKKFCIPNFLKSVGKDILNFLHNHMQTIVKSNNTLMEKGTSAFLCT-ITS---FYS 829
Query: 849 SYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGXXXXXXXXXXXXMAINKEKSFKQ 908
+ SK+LR IFN K IHLGH A +F L P IS + KEK +
Sbjct: 830 T-SKNLRSIFNAKDIHLGHLAYTFLLEKTPKQISKYKKEQNYINIKKQTVLSKKEKRLLK 888
Query: 909 RGNFSKKQ 916
F KKQ
Sbjct: 889 SKQFQKKQ 896
Score = 64 (27.6 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 25/102 (24%), Positives = 46/102 (45%)
Query: 260 DSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 319
++ D +N T L P+ LKQ+ I+ K + + L +L C +++ K +VF++
Sbjct: 508 NNDDDNNNTYEL--PEQLKQYCILIDMKQKFICLIYMLLD-CI----EKKKKPVVFLSNH 560
Query: 320 DMADYHTELLSTXXXXXXXXEYNIDPDNYEIPKKTEVKSGPI 361
+Y LL +++ N E+ KK K P+
Sbjct: 561 HSVEYLQILLKNIYWPT-----DVNKKNIEVNKKLNEKITPV 597
Score = 58 (25.5 bits), Expect = 6.2e-59, Sum P(3) = 6.2e-59
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 608 DSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 667
++ D +N T L P+ LKQ+ I+ K + + L +L C +++ K +VF++
Sbjct: 508 NNDDDNNNTYEL--PEQLKQYCILIDMKQKFICLIYMLLD-CI----EKKKKPVVFLSNH 560
Query: 668 DMADYHTELLSTV 680
+Y LL +
Sbjct: 561 HSVEYLQILLKNI 573
Score = 57 (25.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 528 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK--------PQFQS 579
+ D + + +FSKV E + +LD + ++++ I +FQ
Sbjct: 349 IYDMIRKIKQEEFSKVHKKKKKEENEVLDHINDTNMSDMNNISNDHSNDYEQFILDKFQM 408
Query: 580 ILLSATLTPAVQRLAGMTLQN 600
I +SATL A++ LA L N
Sbjct: 409 IFISATLNHAMKTLANYCLTN 429
Score = 40 (19.1 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 639 VALASFILGKCQNVNEDEESKM 660
V + + G +N+N+D+++ M
Sbjct: 64 VDILGLLKGDSENMNDDDDNNM 85
Score = 39 (18.8 bits), Expect = 9.2e-22, Sum P(3) = 9.2e-22
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 393 EEFPGIHPFMKKNLNEGMNITQVTTVQQLS 422
EEF +H KK NE ++ T + ++
Sbjct: 359 EEFSKVHKKKKKEENEVLDHINDTNMSDMN 388
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 397 (144.8 bits), Expect = 4.1e-38, Sum P(2) = 4.1e-38
Identities = 93/278 (33%), Positives = 165/278 (59%)
Query: 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463
K + E M +T +Q +I+P+L+G DVL ++TGSGKTLA+ IP I+ + ++ K
Sbjct: 174 KGVKE-MGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKL--KFMP 230
Query: 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
++G +++ PTRELA+QT + +L + GG +E ++ G++ILVA
Sbjct: 231 RNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGVNILVA 289
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
TPGRLLDH ++T F ++ L++DEADRIL+ G+E ++ + +++L K++ QS+L S
Sbjct: 290 TPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKR---QSMLFS 346
Query: 584 ATLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALA 642
AT T V+ LA ++L+ P+ + D+ D T ++ + L+Q ++V P + R + L
Sbjct: 347 ATQTRKVEDLARISLKKEPLYVGVDDNKD----TATV---EGLEQGYVVCPSEKRFLLLF 399
Query: 643 SFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
+F+ ++ + K++VF ++ +H ELL+ +
Sbjct: 400 TFL-------KKNRKKKLMVFFSSCMSVKFHYELLNYI 430
Score = 334 (122.6 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M +T +Q +I+P+L+G DVL ++TGSGKTLA+ IP I+ + ++ K ++G
Sbjct: 179 MGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKL--KFMPRNGTGV 236
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA+QT + +L + GG +E ++ G++ILVATPGRLL
Sbjct: 237 IVLSPTRELAMQTYGVLKELMTHHVHTY-GLIMGGSNRSAEAQKLANGVNILVATPGRLL 295
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T F ++ L++DEADRIL+ G+E ++ + +++L K++ QS+L SAT T
Sbjct: 296 DHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKR---QSMLFSATQT 350
Score = 317 (116.6 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 75/223 (33%), Positives = 125/223 (56%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + QS+L SAT T V+ LA ++L+ D + D+ + +
Sbjct: 328 ELKQIIKLLPKKRQSMLFSATQTRKVEDLARISLKKEPLYVGVD-----DNKDTATV-EG 381
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ +H ELL+ + +
Sbjct: 382 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCMSVKFHYELLNYI---D 431
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQ+ P +Y
Sbjct: 432 LPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEY 491
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+HRVGRTAR + G +LL L P E+ + L+ ++ + E +
Sbjct: 492 IHRVGRTARGINGRGHALLILRPEELGFLRFLKQAKVPLSEFE 534
Score = 164 (62.8 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 43/147 (29%), Positives = 86/147 (58%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T F ++ L++DEADRIL+ G+E ++ + +++L K++ QS+L SAT T V+
Sbjct: 299 QNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKR---QSMLFSATQTRKVED 355
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D+ D T ++ + L+Q ++V P + R + L +F+
Sbjct: 356 LARISLKKEPLYVGVDDNKD----TATV---EGLEQGYVVCPSEKRFLLLFTFL------ 402
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ +H ELL+
Sbjct: 403 -KKNRKKKLMVFFSSCMSVKFHYELLN 428
Score = 86 (35.3 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 813 TAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSF 872
T + +Q + + + LH SA + Y S+VR Y S+S L+ I+N + + L A SF
Sbjct: 538 TKISDIQSQLDKLIEKNYYLHKSAQEAYKSYVRAYDSHS--LKQIYNVETLDLPKVAMSF 595
Query: 873 ALRDAPSV 880
+ P V
Sbjct: 596 GFKVPPFV 603
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 404 (147.3 bits), Expect = 2.9e-38, Sum P(2) = 2.9e-38
Identities = 97/298 (32%), Positives = 173/298 (58%)
Query: 387 FAPTSYEEFPGIHPFMKKNLNEG---MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKT 443
F S+ G+ + +N +G M T +T +Q SI+P+L+G D+L ++TGSGKT
Sbjct: 161 FEDNSFTSLAGL---VSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKT 217
Query: 444 LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG 503
LA+ IP ++ + ++ K ++G +I+ PTRELA+QT + +L + G
Sbjct: 218 LAFLIPAVELIYKL--KFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTY-GLIMG 274
Query: 504 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 563
G +E ++ GI+I+VATPGRLLDH ++T + ++ LV+DEADRIL+ G+E ++
Sbjct: 275 GSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEM 334
Query: 564 AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIP 622
+ +++L K++ Q++L SAT T V+ LA ++L+ P+ + D+ + T ++
Sbjct: 335 KQIIKLLPKRR---QTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKE----TATV--- 384
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
D L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ +
Sbjct: 385 DGLEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCMSVKYHYELLNYI 435
Score = 337 (123.7 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 69/178 (38%), Positives = 114/178 (64%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP ++ + ++ K ++G
Sbjct: 184 MGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIYKL--KFMPRNGTGV 241
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 242 IILSPTRELAMQTYGVLKELMNHHVHTY-GLIMGGSNRSAEAQKLGNGINIIVATPGRLL 300
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRIL+ G+E ++ + +++L K++ Q++L SAT T
Sbjct: 301 DHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRR---QTMLFSATQT 355
Score = 320 (117.7 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 79/225 (35%), Positives = 125/225 (55%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D N + V D
Sbjct: 333 EMKQIIKLLPKRRQTMLFSATQTRKVEDLAKISLKKEPLYVGVDD----NKETATV--DG 386
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 387 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKLMVFFSSCMSVKYHYELLNYI---D 436
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS--ST 742
+ +HG Q++RT F F + +SG+L+CTDVAARGLD+P VDWIVQY P
Sbjct: 437 LPVLAIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPEVDWIVQYDPPDDPKQK 496
Query: 743 DYVHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+Y+HRVGRTAR + G +LL L P E+ + L+ R+ + E +
Sbjct: 497 EYIHRVGRTARGINGRGHALLILRPEELGFLRYLKQARVPLSEFE 541
Score = 162 (62.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 43/147 (29%), Positives = 86/147 (58%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRIL+ G+E ++ + +++L K++ Q++L SAT T V+
Sbjct: 304 QNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRR---QTMLFSATQTRKVED 360
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D+ + T ++ D L+Q ++V P + R + L +F+
Sbjct: 361 LAKISLKKEPLYVGVDDNKE----TATV---DGLEQGYVVCPSEKRFLLLFTFL------ 407
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 408 -KKNRKKKLMVFFSSCMSVKYHYELLN 433
Score = 80 (33.2 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y +++R Y S+S L+ I+N + L + SF +
Sbjct: 550 IQSQLEKLIEKNYFLHKSAQEAYKAYIRAYDSHS--LKQIYNVGNLDLNKVSLSFGFKVP 607
Query: 878 PSV 880
P V
Sbjct: 608 PYV 610
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 399 (145.5 bits), Expect = 4.3e-38, Sum P(2) = 4.3e-38
Identities = 112/307 (36%), Positives = 171/307 (55%)
Query: 344 DPDNYEIPKKTEVKSGPISSLFQ-NNPDIPN-VPTRRLKPVS--EALFAPTSYEEFPGIH 399
DP++ KK + K+ + L Q P + N VP S + LF + E
Sbjct: 63 DPESKSQSKKEKQKAKDEAKLEQLTKPQVSNEVPDNDNDDDSSEDVLFENADFSE----- 117
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP 459
P MK + E M T++T VQ +I P+L G DVL ++TGSGKTLA+ IP I+ L +
Sbjct: 118 PTMKA-IKE-MGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL-- 173
Query: 460 KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS 519
KI ++G +II PTRELALQ + +L + F + GG + E ++ KG++
Sbjct: 174 KIKPRNGTAVIIITPTRELALQIFGVARELMQ-FHSQTCGIVIGGADRRQEATKLAKGVN 232
Query: 520 ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS 579
+LVATPGRLLDH K+T+ + FS ++ LV+DEADRIL+ G+E ++ + +++L + Q S
Sbjct: 233 LLVATPGRLLDHLKNTQFV-FSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQ--S 289
Query: 580 ILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRL 638
+L SAT T V+ LA ++L+ P+ I+ D+ D L+Q ++V R
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTA-------DGLEQGYVVCDSDKRF 342
Query: 639 VALASFI 645
+ L SF+
Sbjct: 343 LLLFSFL 349
Score = 340 (124.7 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 78/178 (43%), Positives = 116/178 (65%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T++T VQ +I P+L G DVL ++TGSGKTLA+ IP I+ L + KI ++G
Sbjct: 126 MGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL--KIKPRNGTAV 183
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+II PTRELALQ + +L + F + GG + E ++ KG+++LVATPGRLL
Sbjct: 184 IIITPTRELALQIFGVARELMQ-FHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLL 242
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH K+T+ + FS ++ LV+DEADRIL+ G+E ++ + +++L + Q S+L SAT T
Sbjct: 243 DHLKNTQFV-FSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQ--SMLFSATQT 297
Score = 317 (116.6 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 78/208 (37%), Positives = 122/208 (58%)
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
QS+L SAT T V+ LA ++L+ P + ++ D + D L+Q ++V R
Sbjct: 288 QSMLFSATQTTKVEDLARISLR-PGPL----YINVVPEKD-VSTADGLEQGYVVCDSDKR 341
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
+ L SF+ +NV + K++VF+++ + +++ELL+ + ++ LHG Q
Sbjct: 342 FLLLFSFLK---RNVKK----KIIVFLSSCNSVKFYSELLNYI---DLPVLDLHGKQKQQ 391
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR-VGH 756
+RT F F + K G+L+CTDVAARGLD+P VDWIVQ+ P DY+HRVGRTAR
Sbjct: 392 KRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQG 451
Query: 757 EGSSLLFLIPSEVKLVEELQNRRIRIEE 784
+G SL+FL PSE+ + L+ ++ + E
Sbjct: 452 KGKSLMFLTPSELGFLRYLKAAKVPLNE 479
Score = 162 (62.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 71/254 (27%), Positives = 129/254 (50%)
Query: 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD---HCKHTETLKF-SKVEHL 137
K+ +++P+ E + S K + R G ++++ TP R L E ++F S+ +
Sbjct: 158 KTLAFLIPAI----ELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGI 213
Query: 138 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEH 197
V+ ADR R E ++ K LL AT K+T+ + FS ++
Sbjct: 214 VIGGADR-------RQ--EATKLAKGVN------LLVATPGRLLDHLKNTQFV-FSNLKA 257
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQ-NPIQI 256
LV+DEADRIL+ G+E ++ + +++L + Q S+L SAT T V+ LA ++L+ P+ I
Sbjct: 258 LVIDEADRILEIGFEDEMKQIIKVLPNENRQ--SMLFSATQTTKVEDLARISLRPGPLYI 315
Query: 257 DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFM 316
+ D+ D L+Q ++V R + L SF+ +NV + K++VF+
Sbjct: 316 NVVPEKDVSTA-------DGLEQGYVVCDSDKRFLLLFSFLK---RNVKK----KIIVFL 361
Query: 317 ATQDMADYHTELLS 330
++ + +++ELL+
Sbjct: 362 SSCNSVKFYSELLN 375
Score = 71 (30.1 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q + +L+ SA GY ++++ YAS+ L+ ++ ++ L + SF L
Sbjct: 490 IQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHG--LKTVYQIDKLDLKKVSASFGLDQV 547
Query: 878 PSVISGIG 885
P V IG
Sbjct: 548 PRVNLSIG 555
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 399 (145.5 bits), Expect = 4.3e-38, Sum P(2) = 4.3e-38
Identities = 112/307 (36%), Positives = 171/307 (55%)
Query: 344 DPDNYEIPKKTEVKSGPISSLFQ-NNPDIPN-VPTRRLKPVS--EALFAPTSYEEFPGIH 399
DP++ KK + K+ + L Q P + N VP S + LF + E
Sbjct: 63 DPESKSQSKKEKQKAKDEAKLEQLTKPQVSNEVPDNDNDDDSSEDVLFENADFSE----- 117
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP 459
P MK + E M T++T VQ +I P+L G DVL ++TGSGKTLA+ IP I+ L +
Sbjct: 118 PTMKA-IKE-MGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL-- 173
Query: 460 KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS 519
KI ++G +II PTRELALQ + +L + F + GG + E ++ KG++
Sbjct: 174 KIKPRNGTAVIIITPTRELALQIFGVARELMQ-FHSQTCGIVIGGADRRQEATKLAKGVN 232
Query: 520 ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS 579
+LVATPGRLLDH K+T+ + FS ++ LV+DEADRIL+ G+E ++ + +++L + Q S
Sbjct: 233 LLVATPGRLLDHLKNTQFV-FSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQ--S 289
Query: 580 ILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRL 638
+L SAT T V+ LA ++L+ P+ I+ D+ D L+Q ++V R
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTA-------DGLEQGYVVCDSDKRF 342
Query: 639 VALASFI 645
+ L SF+
Sbjct: 343 LLLFSFL 349
Score = 340 (124.7 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 78/178 (43%), Positives = 116/178 (65%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T++T VQ +I P+L G DVL ++TGSGKTLA+ IP I+ L + KI ++G
Sbjct: 126 MGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL--KIKPRNGTAV 183
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+II PTRELALQ + +L + F + GG + E ++ KG+++LVATPGRLL
Sbjct: 184 IIITPTRELALQIFGVARELMQ-FHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLL 242
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH K+T+ + FS ++ LV+DEADRIL+ G+E ++ + +++L + Q S+L SAT T
Sbjct: 243 DHLKNTQFV-FSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQ--SMLFSATQT 297
Score = 317 (116.6 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 78/208 (37%), Positives = 122/208 (58%)
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
QS+L SAT T V+ LA ++L+ P + ++ D + D L+Q ++V R
Sbjct: 288 QSMLFSATQTTKVEDLARISLR-PGPL----YINVVPEKD-VSTADGLEQGYVVCDSDKR 341
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
+ L SF+ +NV + K++VF+++ + +++ELL+ + ++ LHG Q
Sbjct: 342 FLLLFSFLK---RNVKK----KIIVFLSSCNSVKFYSELLNYI---DLPVLDLHGKQKQQ 391
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR-VGH 756
+RT F F + K G+L+CTDVAARGLD+P VDWIVQ+ P DY+HRVGRTAR
Sbjct: 392 KRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQG 451
Query: 757 EGSSLLFLIPSEVKLVEELQNRRIRIEE 784
+G SL+FL PSE+ + L+ ++ + E
Sbjct: 452 KGKSLMFLTPSELGFLRYLKAAKVPLNE 479
Score = 162 (62.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 71/254 (27%), Positives = 129/254 (50%)
Query: 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD---HCKHTETLKF-SKVEHL 137
K+ +++P+ E + S K + R G ++++ TP R L E ++F S+ +
Sbjct: 158 KTLAFLIPAI----ELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGI 213
Query: 138 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEH 197
V+ ADR R E ++ K LL AT K+T+ + FS ++
Sbjct: 214 VIGGADR-------RQ--EATKLAKGVN------LLVATPGRLLDHLKNTQFV-FSNLKA 257
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQ-NPIQI 256
LV+DEADRIL+ G+E ++ + +++L + Q S+L SAT T V+ LA ++L+ P+ I
Sbjct: 258 LVIDEADRILEIGFEDEMKQIIKVLPNENRQ--SMLFSATQTTKVEDLARISLRPGPLYI 315
Query: 257 DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFM 316
+ D+ D L+Q ++V R + L SF+ +NV + K++VF+
Sbjct: 316 NVVPEKDVSTA-------DGLEQGYVVCDSDKRFLLLFSFLK---RNVKK----KIIVFL 361
Query: 317 ATQDMADYHTELLS 330
++ + +++ELL+
Sbjct: 362 SSCNSVKFYSELLN 375
Score = 71 (30.1 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q + +L+ SA GY ++++ YAS+ L+ ++ ++ L + SF L
Sbjct: 490 IQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHG--LKTVYQIDKLDLKKVSASFGLDQV 547
Query: 878 PSVISGIG 885
P V IG
Sbjct: 548 PRVNLSIG 555
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 399 (145.5 bits), Expect = 6.3e-39, Sum P(2) = 6.3e-39
Identities = 92/274 (33%), Positives = 161/274 (58%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
E M ++T +Q SI+P+L+G D+L ++TGSGKTLA+ IP+I+ + ++ K ++G
Sbjct: 185 EEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPRNGT 242
Query: 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 527
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGR
Sbjct: 243 GVLILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEVQKLLNGINIIVATPGR 301
Query: 528 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587
LLDH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 302 LLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR---QTMLFSATQT 358
Query: 588 PAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFIL 646
V+ LA ++L+ P+ + D ++ D L+Q ++V P + R + L +F+
Sbjct: 359 RKVEDLARISLKKEPLYVGVDDDKEVATV-------DGLEQGYVVCPSEKRFLLLFTFL- 410
Query: 647 GKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
++ + K++VF ++ YH ELL+ +
Sbjct: 411 ------KKNRKKKVMVFFSSCMSVKYHYELLNYI 438
Score = 330 (121.2 bits), Expect = 2.6e-59, Sum P(3) = 2.6e-59
Identities = 69/178 (38%), Positives = 114/178 (64%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M ++T +Q SI+P+L+G D+L ++TGSGKTLA+ IP+I+ + ++ K ++G
Sbjct: 187 MGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPRNGTGV 244
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 245 LILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEVQKLLNGINIIVATPGRLL 303
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 304 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR---QTMLFSATQT 358
Score = 314 (115.6 bits), Expect = 2.6e-59, Sum P(3) = 2.6e-59
Identities = 75/221 (33%), Positives = 121/221 (54%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D + D
Sbjct: 336 ELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK------EVATVDG 389
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 390 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKVMVFFSSCMSVKYHYELLNYI---D 439
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 440 LPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 499
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEE 784
+HRVGRTAR + G +LL L P E+ + L+ ++ + +
Sbjct: 500 IHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLNQ 540
Score = 162 (62.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 42/147 (28%), Positives = 82/147 (55%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 307 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR---QTMLFSATQTRKVED 363
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D ++ D L+Q ++V P + R + L +F+
Sbjct: 364 LARISLKKEPLYVGVDDDKEVATV-------DGLEQGYVVCPSEKRFLLLFTFL------ 410
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 411 -KKNRKKKVMVFFSSCMSVKYHYELLN 436
Score = 92 (37.4 bits), Expect = 2.6e-59, Sum P(3) = 2.6e-59
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 551 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 608
Query: 878 PSV 880
P V
Sbjct: 609 PFV 611
>UNIPROTKB|F6XWM4 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969
Ensembl:ENSCAFT00000035837 EMBL:AAEX03014637 OMA:DADNVFA
Uniprot:F6XWM4
Length = 734
Score = 571 (206.1 bits), Expect = 3.7e-59, Sum P(2) = 3.7e-59
Identities = 141/368 (38%), Positives = 220/368 (59%)
Query: 438 TGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFT 494
TGSGKTLA+ IPI++ L K+ +K+ + A+II PTRELA+Q E+ FTK F+
Sbjct: 190 TGSGKTLAFVIPILEILLRREEKL-KKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFS 248
Query: 495 WIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVL 548
I+ W+ GG + +R ++ G +I+VATPGRL D + E L + +E LVL
Sbjct: 249 QIL--WI-GGRNPADDVSRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVL 305
Query: 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608
DEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP++I +
Sbjct: 306 DEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQTQEVESLVRAGLRNPVRISVKE 362
Query: 609 STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 668
++T P L+ +++V + L F+ N +E K L+F +T
Sbjct: 363 KGVAASSTQKT--PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLIFFSTCA 413
Query: 669 MADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL 728
+Y+ + L ++ +++ +HG M +R ++F FR ++SG+L+CTDV ARG+D+P
Sbjct: 414 CVEYYGKALEALV-KSVKIMCIHGKMKH-KRNKIFMEFRKLQSGILVCTDVMARGIDIPE 471
Query: 729 VDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIKL 787
V+W++QY PSS++ +VHR GRTAR+GH GS+L+FL+P E V L+ N++ ++E+KL
Sbjct: 472 VNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPMEESYVTFLEINQKCPLQEMKL 531
Query: 788 KDCLQNLL 795
+ +LL
Sbjct: 532 QKNTGDLL 539
Score = 251 (93.4 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 70/159 (44%), Positives = 97/159 (61%)
Query: 29 TGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFT 85
TGSGKTLA+ IPI++ L K+ +K+ + A+II PTRELA+Q E+ FTK F+
Sbjct: 190 TGSGKTLAFVIPILEILLRREEKL-KKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFS 248
Query: 86 WIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVL 139
I+ W+ GG + +R ++ G +I+VATPGRL D + E L + +E LVL
Sbjct: 249 QIL--WI-GGRNPADDVSRFKEQGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVL 305
Query: 140 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DEADR+LD G+E I LE L KQ+ ++ L SAT T
Sbjct: 306 DEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQT 341
Score = 147 (56.8 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 44/135 (32%), Positives = 69/135 (51%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+E LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP+
Sbjct: 300 LEVLVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQTQEVESLVRAGLRNPV 356
Query: 255 QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 314
+I + ++T P L+ +++V + L F+ N +E K L+
Sbjct: 357 RISVKEKGVAASSTQKT--PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLI 407
Query: 315 FMATQDMADYHTELL 329
F +T +Y+ + L
Sbjct: 408 FFSTCACVEYYGKAL 422
Score = 65 (27.9 bits), Expect = 3.7e-59, Sum P(2) = 3.7e-59
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+S L + + K + S+V+ YA + +L IF K + A+ FAL P +
Sbjct: 543 KSMALADRAVFEKGMKAFVSYVQAYAKHECNL--IFRLKDLDFASLARGFALLRMPKM 598
Score = 37 (18.1 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ E LK ++V +++ + Q + E L K PQF IL PA
Sbjct: 208 RREEKLKKNQVGAIIITPTRELAIQ-----VDEVLAHFTKSFPQFSQILWIGGRNPA 259
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 410 (149.4 bits), Expect = 3.2e-40, Sum P(2) = 3.2e-40
Identities = 107/339 (31%), Positives = 185/339 (54%)
Query: 344 DPDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPG-IHPFM 402
DP + + TE ++G D VP+ L V+ A F TS+ ++
Sbjct: 125 DPKKAKTEEGTEARAGEEPEDGVKEADDSEVPSLPLG-VTGA-FEDTSFASLSNLVNENT 182
Query: 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKIS 462
K + E M +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP+I+ + ++ K
Sbjct: 183 LKAIEE-MGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFM 239
Query: 463 RKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILV 522
++G +I+ PTRELA+QT + +L + GG +E ++ GI+I+V
Sbjct: 240 PRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEVQKLLNGINIVV 298
Query: 523 ATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILL 582
ATPGRLLDH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L
Sbjct: 299 ATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR---QTMLF 355
Query: 583 SATLTPAVQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVAL 641
SAT T V+ LA ++L+ P+ + D ++ D L+Q ++V P + R + L
Sbjct: 356 SATQTRKVEDLARISLKKEPLYVGVDDDKEVATV-------DGLEQGYVVCPSEKRFLLL 408
Query: 642 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
+F+ ++ + K++VF ++ YH ELL+ +
Sbjct: 409 FTFL-------KKNRKKKVMVFFSSCMSVKYHYELLNYI 440
Score = 328 (120.5 bits), Expect = 4.6e-59, Sum P(3) = 4.6e-59
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP+I+ + ++ K ++G
Sbjct: 189 MGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPRNGTGV 246
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 247 LILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEVQKLLNGINIVVATPGRLL 305
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 306 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR---QTMLFSATQT 360
Score = 314 (115.6 bits), Expect = 4.6e-59, Sum P(3) = 4.6e-59
Identities = 75/221 (33%), Positives = 121/221 (54%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D + D
Sbjct: 338 ELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK------EVATVDG 391
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 392 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKVMVFFSSCMSVKYHYELLNYI---D 441
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 442 LPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 501
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEE 784
+HRVGRTAR + G +LL L P E+ + L+ ++ + +
Sbjct: 502 IHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLNQ 542
Score = 162 (62.1 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 42/147 (28%), Positives = 82/147 (55%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 309 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR---QTMLFSATQTRKVED 365
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D ++ D L+Q ++V P + R + L +F+
Sbjct: 366 LARISLKKEPLYVGVDDDKEVATV-------DGLEQGYVVCPSEKRFLLLFTFL------ 412
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 413 -KKNRKKKVMVFFSSCMSVKYHYELLN 438
Score = 92 (37.4 bits), Expect = 4.6e-59, Sum P(3) = 4.6e-59
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 553 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 610
Query: 878 PSV 880
P V
Sbjct: 611 PFV 613
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 399 (145.5 bits), Expect = 7.9e-39, Sum P(2) = 7.9e-39
Identities = 100/316 (31%), Positives = 179/316 (56%)
Query: 367 NNPDIPNVPTRRLKPVSEALFAPTSYEEFPG-IHPFMKKNLNEGMNITQVTTVQQLSIQP 425
++ ++P++P V+ A F TS+ ++ K + E M +T +Q SI+P
Sbjct: 163 DDSEVPSLPLG----VTGA-FEDTSFASLSNLVNENTLKAIEE-MGFKHMTEIQHKSIRP 216
Query: 426 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485
+L+G D+L ++TGSGKTLA+ IP+I+ + ++ K ++G +I+ PTRELA+QT +
Sbjct: 217 LLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPRNGTGVLILSPTRELAMQTFGV 274
Query: 486 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 545
+L + GG +E ++ GI+I+VATPGRLLDH ++T + ++
Sbjct: 275 LKELMTHHVHTY-GLIMGGSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQC 333
Query: 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQN-PIQI 604
LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+ LA ++L+ P+ +
Sbjct: 334 LVIDEADRILDVGFEEELKQIIKLLPARR---QTMLFSATQTRKVEDLARISLKKEPLYV 390
Query: 605 DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFM 664
D ++ D L+Q ++V P + R + L +F+ ++ + K++VF
Sbjct: 391 GVDDDKEVATV-------DGLEQGYVVCPSEKRFLLLFTFL-------KKNRKKKVMVFF 436
Query: 665 ATQDMADYHTELLSTV 680
++ YH ELL+ +
Sbjct: 437 SSCMSVKYHYELLNYI 452
Score = 328 (120.5 bits), Expect = 5.4e-59, Sum P(3) = 5.4e-59
Identities = 69/178 (38%), Positives = 113/178 (63%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M +T +Q SI+P+L+G D+L ++TGSGKTLA+ IP+I+ + ++ K ++G
Sbjct: 201 MGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPRNGTGV 258
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+QT + +L + GG +E ++ GI+I+VATPGRLL
Sbjct: 259 LILSPTRELAMQTFGVLKELMTHHVHTY-GLIMGGSNRSAEVQKLLNGINIVVATPGRLL 317
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T
Sbjct: 318 DHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR---QTMLFSATQT 372
Score = 314 (115.6 bits), Expect = 5.4e-59, Sum P(3) = 5.4e-59
Identities = 75/221 (33%), Positives = 121/221 (54%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+K + Q++L SAT T V+ LA ++L+ D + D
Sbjct: 350 ELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK------EVATVDG 403
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q ++V P + R + L +F+ ++ + K++VF ++ YH ELL+ + +
Sbjct: 404 LEQGYVVCPSEKRFLLLFTFL-------KKNRKKKVMVFFSSCMSVKYHYELLNYI---D 453
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 454 LPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 513
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEE 784
+HRVGRTAR + G +LL L P E+ + L+ ++ + +
Sbjct: 514 IHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLNQ 554
Score = 162 (62.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 42/147 (28%), Positives = 82/147 (55%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T + ++ LV+DEADRILD G+E ++ + +++L ++ Q++L SAT T V+
Sbjct: 321 QNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR---QTMLFSATQTRKVED 377
Query: 245 LAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
LA ++L+ P+ + D ++ D L+Q ++V P + R + L +F+
Sbjct: 378 LARISLKKEPLYVGVDDDKEVATV-------DGLEQGYVVCPSEKRFLLLFTFL------ 424
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
++ + K++VF ++ YH ELL+
Sbjct: 425 -KKNRKKKVMVFFSSCMSVKYHYELLN 450
Score = 92 (37.4 bits), Expect = 5.4e-59, Sum P(3) = 5.4e-59
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E + + LH SA + Y S++R Y S+S L+ IFN ++L A SF +
Sbjct: 565 IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHS--LKQIFNVNNLNLPQVALSFGFKVP 622
Query: 878 PSV 880
P V
Sbjct: 623 PFV 625
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 563 (203.2 bits), Expect = 3.9e-58, Sum P(2) = 3.9e-58
Identities = 137/409 (33%), Positives = 229/409 (55%)
Query: 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM 457
+H + + L E + T +T VQ I + DV + TGSGKTLA+ IP ++ L +
Sbjct: 16 LHDNILQTLKE-LGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKR 74
Query: 458 RPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-K 516
K+ +K + A+II PTRELA+Q E+ + + F L GG + +++ +
Sbjct: 75 EEKL-KKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQ 133
Query: 517 GISILVATPGRLLDHCKH-TETLKFS----KVEHLVLDEADRILDQGYERDIAEFLEILK 571
G +I++ATPGRL D + + L + ++ LVLDEADR+LD G+E + L L
Sbjct: 134 GANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLP 193
Query: 572 KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 631
KQ+ ++ L SAT T +++L L+NP++I + ++ P L ++ +
Sbjct: 194 KQR---RTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKT--PAKLSNYYTM 248
Query: 632 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLH 691
+ + L +F+ + + K LVF +T +Y + L VL +N++ +H
Sbjct: 249 CRAEEKFNTLVAFL-------RQHKHEKQLVFFSTCACVEYFGKALE-VLVKNVSIHCIH 300
Query: 692 GSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRT 751
G M +R ++F FR++KSG+L+CTDV ARG+D+P V+W++QY PSS++ +VHR GRT
Sbjct: 301 GKMKH-KRNKIFADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRT 359
Query: 752 ARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIK-LKDCLQNLLSVK 798
AR+G++G++L+FL+P E V L N++ ++ +KD + L +K
Sbjct: 360 ARIGNQGNALVFLLPMEESYVNFLSINQKCPLQSFSSVKDVVDVLPKLK 408
Score = 249 (92.7 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 66/184 (35%), Positives = 101/184 (54%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ T +T VQ I + DV + TGSGKTLA+ IP ++ L + K+ +K + A
Sbjct: 27 LGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKL-KKMQVGA 85
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRL 119
+II PTRELA+Q E+ + + F L GG + +++ +G +I++ATPGRL
Sbjct: 86 LIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANIIIATPGRL 145
Query: 120 LDHCKH-TETLKFS----KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174
D + + L + ++ LVLDEADR+LD G+E + L L KQ+ ++ L S
Sbjct: 146 EDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQR---RTGLFS 202
Query: 175 ATLT 178
AT T
Sbjct: 203 ATQT 206
Score = 124 (48.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID 257
LVLDEADR+LD G+E + L L KQ+ ++ L SAT T +++L L+NP++I
Sbjct: 168 LVLDEADRLLDMGFEASLNTILGYLPKQR---RTGLFSATQTQELEKLVRAGLRNPVRIT 224
Query: 258 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317
+ ++ P L ++ + + + L +F+ + + K LVF +
Sbjct: 225 VKEKGVAASSVQKT--PAKLSNYYTMCRAEEKFNTLVAFL-------RQHKHEKQLVFFS 275
Query: 318 TQDMADYHTELL 329
T +Y + L
Sbjct: 276 TCACVEYFGKAL 287
Score = 64 (27.6 bits), Expect = 3.9e-58, Sum P(2) = 3.9e-58
Identities = 20/96 (20%), Positives = 41/96 (42%)
Query: 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWV 844
+ +++ N LS+ + L + +V+ L ++ L + + + + S+V
Sbjct: 373 LPMEESYVNFLSINQKCPLQSFS--SVKDVVDVLP-KLKAMALGDRAMFEKGMRAFVSYV 429
Query: 845 RFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+ YA + L IF K + A+ FAL P +
Sbjct: 430 QAYAKHECSL--IFRIKDLDFAALARGFALLRLPKM 463
>TAIR|locus:2153564 [details] [associations]
symbol:AT5G05450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB010692 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AJ010469 IPI:IPI00516547
PIR:T51344 RefSeq:NP_196164.1 UniGene:At.23004
ProteinModelPortal:Q9FLB0 SMR:Q9FLB0 PaxDb:Q9FLB0 PRIDE:Q9FLB0
EnsemblPlants:AT5G05450.1 GeneID:830428 KEGG:ath:AT5G05450
GeneFarm:935 TAIR:At5g05450 InParanoid:Q9FLB0 OMA:MDSSANI
PhylomeDB:Q9FLB0 ProtClustDB:CLSN2679231 Genevestigator:Q9FLB0
GermOnline:AT5G05450 Uniprot:Q9FLB0
Length = 593
Score = 551 (199.0 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 133/411 (32%), Positives = 220/411 (53%)
Query: 395 FPGIHPFMKKNLNEGMNITQV---TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPII 451
F + P + ++ E +N + T VQ +I + DV V + TGSGKTLA+ +P++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 452 QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
+ L+ + + VII PTREL+ Q + + + L GG ++K++
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADM 135
Query: 512 ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570
I + G ++L+ TPGRL D + E L F +E L+LDEADR+L+ G++R + + L
Sbjct: 136 KIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRL 195
Query: 571 KKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA---ADSTDIHNTTDSLVIPDSLKQ 627
KQ+ ++ L SAT T V+ LA L+NP++++ + S T+S P L
Sbjct: 196 PKQR---RTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKT-PSGLHL 251
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG-ENIA 686
++ + L ++ N D+ K++VF T DY +LS + ++I+
Sbjct: 252 EYMECEADKKSSQLVDLLIK-----NSDK--KLIVFFMTCASVDYWGLVLSKIPALKSIS 304
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG M Q+ R + +F SG L+CTDVAARGLD+P +D++VQY P + H
Sbjct: 305 LIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNH 364
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSV 797
R GRTAR+G +G +++FL+P E VE ++ RR+ +EE K + +++ +
Sbjct: 365 RAGRTARLGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKCSEDASDVIPI 415
Score = 253 (94.1 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 61/173 (35%), Positives = 96/173 (55%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T VQ +I + DV V + TGSGKTLA+ +P+++ L+ + + VII PT
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPT 99
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKH 125
REL+ Q + + + L GG ++K++ I + G ++L+ TPGRL D +
Sbjct: 100 RELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMER 159
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
E L F +E L+LDEADR+L+ G++R + + L KQ+ ++ L SAT T
Sbjct: 160 MEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQR---RTGLFSATQT 209
Score = 140 (54.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 44/146 (30%), Positives = 72/146 (49%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
E L F +E L+LDEADR+L+ G++R + + L KQ+ ++ L SAT T V+ LA
Sbjct: 161 EILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQR---RTGLFSATQTEGVEELAK 217
Query: 248 MTLQNPIQIDA---ADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304
L+NP++++ + S T+S P L ++ + L ++
Sbjct: 218 AGLRNPVRVEVRAKSKSESSQQLTNSKT-PSGLHLEYMECEADKKSSQLVDLLIK----- 271
Query: 305 NEDEESKMLVFMATQDMADYHTELLS 330
N D+ K++VF T DY +LS
Sbjct: 272 NSDK--KLIVFFMTCASVDYWGLVLS 295
Score = 64 (27.6 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 812 ETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKS 871
E A+ + + SA ++ + + K + S+VR Y + IF +K + +G A
Sbjct: 407 EDASDVIPI-IRSAAMKDRAVMEKGLKAFVSFVRAYKEHHCSF--IFRWKDLEIGKLAMG 463
Query: 872 FALRDAPSV 880
+ L PS+
Sbjct: 464 YGLLYLPSM 472
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 547 (197.6 bits), Expect = 9.3e-57, Sum P(2) = 9.3e-57
Identities = 133/395 (33%), Positives = 219/395 (55%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
+ + ++T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K +
Sbjct: 25 QDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKMQV 83
Query: 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPG 526
A+II PTRELA+Q E+ T K F L GG + + ++ G +I+VATPG
Sbjct: 84 GAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPG 143
Query: 527 RLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSIL 581
RL D + + L + ++ LVLDEADR+LD G+E + L L KQ+ ++ L
Sbjct: 144 RLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQR---RTGL 200
Query: 582 LSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVAL 641
SAT T V+ L L+NP++I + T P L+ ++++ + L
Sbjct: 201 FSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKT--PTRLENYYMICKADEKFNQL 258
Query: 642 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701
F+ + ++ K LVF +T +Y+ + L +++ + + +HG M +R +
Sbjct: 259 VHFL-------RQHKQEKHLVFFSTCACVEYYGKALESLI-KQVKIMCIHGKMKH-KRNK 309
Query: 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL 761
+F FR + G+L+CTDV ARG+D+P V W++QY PSS++ +VHR GRTAR+G+ GS+L
Sbjct: 310 IFTEFRRLAGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSAL 369
Query: 762 LFLIPSEVKLVEELQ-NRRIRIEEIKLKDCLQNLL 795
+FL+P E + L N++ ++E++ + + +LL
Sbjct: 370 VFLLPMEESYINFLSINQKCPMQEMQPQRNVLDLL 404
Score = 254 (94.5 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 69/184 (37%), Positives = 101/184 (54%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ ++T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K + A
Sbjct: 27 LGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKMQVGA 85
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRL 119
+II PTRELA+Q E+ T K F L GG + + ++ G +I+VATPGRL
Sbjct: 86 IIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGRL 145
Query: 120 LDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174
D + + L + ++ LVLDEADR+LD G+E + L L KQ+ ++ L S
Sbjct: 146 EDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQR---RTGLFS 202
Query: 175 ATLT 178
AT T
Sbjct: 203 ATQT 206
Score = 136 (52.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 39/134 (29%), Positives = 65/134 (48%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID 257
LVLDEADR+LD G+E + L L KQ+ ++ L SAT T V+ L L+NP++I
Sbjct: 168 LVLDEADRLLDMGFESSLNAILAFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRIS 224
Query: 258 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317
+ T P L+ ++++ + L F+ + ++ K LVF +
Sbjct: 225 VKEKGVAATNTQKT--PTRLENYYMICKADEKFNQLVHFL-------RQHKQEKHLVFFS 275
Query: 318 TQDMADYHTELLST 331
T +Y+ + L +
Sbjct: 276 TCACVEYYGKALES 289
Score = 68 (29.0 bits), Expect = 9.3e-57, Sum P(2) = 9.3e-57
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+S L + + K + S+++ YA + +L IF K + AK FAL P +
Sbjct: 408 KSMALADRAVFEKGMKAFVSYIQAYAKHECNL--IFRIKDLDFASLAKGFALLKMPKM 463
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 547 (197.6 bits), Expect = 9.3e-57, Sum P(2) = 9.3e-57
Identities = 133/395 (33%), Positives = 219/395 (55%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
+ + ++T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K +
Sbjct: 25 QDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKMQV 83
Query: 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPG 526
A+II PTRELA+Q E+ T K F L GG + + ++ G +I+VATPG
Sbjct: 84 GAIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPG 143
Query: 527 RLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSIL 581
RL D + + L + ++ LVLDEADR+LD G+E + L L KQ+ ++ L
Sbjct: 144 RLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQR---RTGL 200
Query: 582 LSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVAL 641
SAT T V+ L L+NP++I + T P L+ ++++ + L
Sbjct: 201 FSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKT--PTRLENYYMICKADEKFNQL 258
Query: 642 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701
F+ + ++ K LVF +T +Y+ + L +++ + + +HG M +R +
Sbjct: 259 VHFL-------RQHKQEKHLVFFSTCACVEYYGKALESLI-KQVKIMCIHGKMKH-KRNK 309
Query: 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL 761
+F FR + G+L+CTDV ARG+D+P V W++QY PSS++ +VHR GRTAR+G+ GS+L
Sbjct: 310 IFTEFRRLAGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSAL 369
Query: 762 LFLIPSEVKLVEELQ-NRRIRIEEIKLKDCLQNLL 795
+FL+P E + L N++ ++E++ + + +LL
Sbjct: 370 VFLLPMEESYINFLSINQKCPMQEMQPQRNVLDLL 404
Score = 254 (94.5 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 69/184 (37%), Positives = 101/184 (54%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ ++T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K + A
Sbjct: 27 LGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKMQVGA 85
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRL 119
+II PTRELA+Q E+ T K F L GG + + ++ G +I+VATPGRL
Sbjct: 86 IIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGRL 145
Query: 120 LDHCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174
D + + L + ++ LVLDEADR+LD G+E + L L KQ+ ++ L S
Sbjct: 146 EDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQR---RTGLFS 202
Query: 175 ATLT 178
AT T
Sbjct: 203 ATQT 206
Score = 136 (52.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 39/134 (29%), Positives = 65/134 (48%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID 257
LVLDEADR+LD G+E + L L KQ+ ++ L SAT T V+ L L+NP++I
Sbjct: 168 LVLDEADRLLDMGFESSLNAILAFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRIS 224
Query: 258 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317
+ T P L+ ++++ + L F+ + ++ K LVF +
Sbjct: 225 VKEKGVAATNTQKT--PTRLENYYMICKADEKFNQLVHFL-------RQHKQEKHLVFFS 275
Query: 318 TQDMADYHTELLST 331
T +Y+ + L +
Sbjct: 276 TCACVEYYGKALES 289
Score = 68 (29.0 bits), Expect = 9.3e-57, Sum P(2) = 9.3e-57
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+S L + + K + S+++ YA + +L IF K + AK FAL P +
Sbjct: 408 KSMALADRAVFEKGMKAFVSYIQAYAKHECNL--IFRIKDLDFASLAKGFALLKMPKM 463
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 559 (201.8 bits), Expect = 1.7e-54, Sum P(2) = 1.7e-54
Identities = 146/420 (34%), Positives = 221/420 (52%)
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473
++T +Q SI L G DVL ++TGSGKTLA+ +P+I+KL R K + DG+ A+II
Sbjct: 63 KLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLY--REKWTEFDGLGALIIS 120
Query: 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
PTRELA+Q E+ TK+ S T + GG+ +K E RI + I+IL+ TPGR+L H
Sbjct: 121 PTRELAMQIYEVLTKI-GSHTSFSAGLVIGGKDVKFELERISR-INILIGTPGRILQHLD 178
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
L S ++ LVLDEADR LD G+++ + + L P Q++L SAT + +V L
Sbjct: 179 QAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLS---PSRQTLLFSATQSQSVADL 235
Query: 594 AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILG--KCQN 651
A ++L + + D D + P++L+Q +I P +L L SFI KC
Sbjct: 236 ARLSLTDYKTVGTHDVMD-GSVNKEASTPETLQQFYIEVPLADKLDILFSFIKSHLKC-- 292
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
KM+VF+++ + E + I+ LHG Q RTE F +
Sbjct: 293 -------KMIVFLSSSKQVHFVYETFRK-MQPGISLMHLHGRQKQRARTETLDKFNRAQQ 344
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK- 770
L TDV ARG+D P VDW+VQ P Y+HRVGR AR G +G SL+ L P E +
Sbjct: 345 VCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLTPQEQEA 404
Query: 771 LVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQK 830
++ L R+I ++ +K + + +++ L + D ++ +S+ ++ QK
Sbjct: 405 FLKRLNARKIEPGKLNIKQSKKKSIKPQLQSLLFK--DPELKYLGQKAFISYVRSIYVQK 462
Score = 317 (116.6 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 89/227 (39%), Positives = 127/227 (55%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
++T +Q SI L G DVL ++TGSGKTLA+ +P+I+KL R K + DG+ A+II
Sbjct: 63 KLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLY--REKWTEFDGLGALIIS 120
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA+Q E+ TK+ S T + GG+ +K E RI + I+IL+ TPGR+L H
Sbjct: 121 PTRELAMQIYEVLTKI-GSHTSFSAGLVIGGKDVKFELERISR-INILIGTPGRILQHLD 178
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWC 184
L S ++ LVLDEADR LD G+++ + + L P Q++L SAT + +
Sbjct: 179 QAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLS---PSRQTLLFSATQSQSVADL 235
Query: 185 KHTETLKFSKV-EHLVLD-----EAD--RILDQGY-ERDIAEFLEIL 222
+ V H V+D EA L Q Y E +A+ L+IL
Sbjct: 236 ARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADKLDIL 282
Score = 137 (53.3 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 77/288 (26%), Positives = 123/288 (42%)
Query: 44 KLQEMRPKISRKDGIYAVIILPTRELALQTLE--IFTKLCKSFTWIVPSWLTGGEKMKSE 101
K+ E PKI++ LP + L+ L F KL + +P L G + + +
Sbjct: 29 KIDEYDPKITKAKFFKD---LPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAA 85
Query: 102 KARIRKGISILVATPGRLLDHCKHTE-----TLKFSKVEHLVLDEADRILDQGYERDIAE 156
K K ++ LV +L K TE L S L + + + G +
Sbjct: 86 KTGSGKTLAFLVPVIEKLYRE-KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSA 144
Query: 157 FLEILKKQ-KPQFQSILLSATL--TPATCWCKHTET---LKFSKVEHLVLDEADRILDQG 210
L I K K + + I L TP +H + L S ++ LVLDEADR LD G
Sbjct: 145 GLVIGGKDVKFELERISRINILIGTPGRI-LQHLDQAVGLNTSNLQMLVLDEADRCLDMG 203
Query: 211 YERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDS 270
+++ + + L P Q++L SAT + +V LA ++L + + D D +
Sbjct: 204 FKKTLDAIVSTLS---PSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMD-GSVNKE 259
Query: 271 LVIPDSLKQHFIVTPPKLRLVALASFILG--KCQNVNEDEESKMLVFM 316
P++L+Q +I P +L L SFI KC+ + SK + F+
Sbjct: 260 ASTPETLQQFYIEVPLADKLDILFSFIKSHLKCKMIVFLSSSKQVHFV 307
Score = 54 (24.1 bits), Expect = 1.7e-54, Sum P(2) = 1.7e-54
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 817 ALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRD 876
+++ +S + + L K + S+VR + Y + + +F F ++ FA S L
Sbjct: 428 SIKPQLQSLLFKDPELKYLGQKAFISYVR--SIYVQKDKQVFKFDELPTEEFAYSLGLPG 485
Query: 877 APSV 880
AP +
Sbjct: 486 APKI 489
Score = 37 (18.1 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 306 EDEESKMLVFMATQDMAD 323
++EE K + ++ T +++D
Sbjct: 694 DEEEGKTVAYLGTGNLSD 711
Score = 37 (18.1 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 654 EDEESKMLVFMATQDMAD 671
++EE K + ++ T +++D
Sbjct: 694 DEEEGKTVAYLGTGNLSD 711
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 379 (138.5 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 97/264 (36%), Positives = 148/264 (56%)
Query: 384 EALFAPTSYEEFPGIHPFMKKNLN--EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSG 441
E L YE F + P + L+ + +T +Q +I L G DVL ++TGSG
Sbjct: 39 EDLDLKAKYESFSDL-PISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSG 97
Query: 442 KTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWL 501
KTLA+ +PI++ L R + S DG+ A+II PTRELA+Q E+ K+ + T+ +
Sbjct: 98 KTLAFLVPILENLY--RKQWSDHDGLGALIISPTRELAIQIFEVLRKIGRYHTFSA-GLV 154
Query: 502 TGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYER 561
GG+ +K E+ R+ + ++ILV TPGR+L H T + ++ LVLDEADRI+D G+++
Sbjct: 155 IGGKSLKEEQERLGR-MNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQK 213
Query: 562 DIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVI 621
+ + L P+ Q++L SAT T V LA ++LQ+P + +H S
Sbjct: 214 TVDAIIGHLP---PERQTLLFSATQTKKVSDLARLSLQDP------EYVAVHEAASSAT- 263
Query: 622 PDSLKQHFIVTPPKLRLVALASFI 645
P L+QH++VTP +L L SFI
Sbjct: 264 PSKLQQHYVVTPLPQKLDTLWSFI 287
Score = 329 (120.9 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 87/257 (33%), Positives = 131/257 (50%)
Query: 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP 634
P+ Q++L SAT T V LA ++LQ+P + +H S P L+QH++VTP
Sbjct: 224 PERQTLLFSATQTKKVSDLARLSLQDP------EYVAVHEAASSAT-PSKLQQHYVVTPL 276
Query: 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSM 694
+L L SFI N+ +SK +VFM++ + E + I LHG
Sbjct: 277 PQKLDTLWSFIRS---NL----KSKTIVFMSSGKQVRFVYESFRH-MQPGIPLLHLHGRQ 328
Query: 695 SQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754
Q R ++ F + VL TDVAARGLD P VDW++Q P + Y+HRVGRTAR
Sbjct: 329 KQGGRLDITTRFSQAQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARY 388
Query: 755 GHEGSSLLFLIPSEVK-LVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVET 813
+G ++LFL PSE K ++ L+ +R+ +E I ++ Q S+K + D ++
Sbjct: 389 ERDGRAVLFLDPSEEKGMLRRLEQKRVTVERINVRANKQQ--SIKNQLQNMCFKDPELKY 446
Query: 814 AATALQMSFESAVLQQK 830
+S+ +V QK
Sbjct: 447 LGQKAFISYVKSVYIQK 463
Score = 302 (111.4 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 70/173 (40%), Positives = 108/173 (62%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T +Q +I L G DVL ++TGSGKTLA+ +PI++ L R + S DG+ A+II P
Sbjct: 71 LTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENLY--RKQWSDHDGLGALIISP 128
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA+Q E+ K+ + T+ + GG+ +K E+ R+ + ++ILV TPGR+L H
Sbjct: 129 TRELAIQIFEVLRKIGRYHTFSA-GLVIGGKSLKEEQERLGR-MNILVCTPGRMLQHLDQ 186
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
T + ++ LVLDEADRI+D G+++ + + L P+ Q++L SAT T
Sbjct: 187 TAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLP---PERQTLLFSATQT 236
Score = 152 (58.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
++ LVLDEADRI+D G+++ + + L P+ Q++L SAT T V LA ++LQ+P
Sbjct: 195 LQMLVLDEADRIMDMGFQKTVDAIIGHLP---PERQTLLFSATQTKKVSDLARLSLQDP- 250
Query: 255 QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 297
+ +H S P L+QH++VTP +L L SFI
Sbjct: 251 -----EYVAVHEAASSAT-PSKLQQHYVVTPLPQKLDTLWSFI 287
Score = 58 (25.5 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 838 KGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
K + S+V+ + Y + + FN K++ L FA S L AP +
Sbjct: 450 KAFISYVK--SVYIQKDKETFNLKELKLDDFAASLGLPGAPRI 490
Score = 46 (21.3 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 32/96 (33%), Positives = 48/96 (50%)
Query: 468 YAVIILPTRELALQTLEIFTKL-CKSFTWIVPSWLTGGEKMKS--EKAR-IRKGISILVA 523
Y V LP + L TL F + KS T IV +++ G++++ E R ++ GI +L
Sbjct: 271 YVVTPLPQK---LDTLWSFIRSNLKSKT-IV--FMSSGKQVRFVYESFRHMQPGIPLL-H 323
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVL---DEADRILD 556
GR + T +FS+ +H VL D A R LD
Sbjct: 324 LHGRQKQGGRLDITTRFSQAQHAVLFSTDVAARGLD 359
Score = 38 (18.4 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 189 TLKFSKVEHLVL---DEADRILD 208
T +FS+ +H VL D A R LD
Sbjct: 337 TTRFSQAQHAVLFSTDVAARGLD 359
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 527 (190.6 bits), Expect = 4.7e-53, Sum P(2) = 4.7e-53
Identities = 140/409 (34%), Positives = 222/409 (54%)
Query: 395 FPGIHPFMKKNLNEGMNIT--QVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLAYAIPII 451
F + P + +++ E ++ + +V T Q P L DV+V + TGSGKTLA+ +P I
Sbjct: 16 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
Query: 452 QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
+ ++ + + VII PTREL+ Q ++ + + L GG +++++
Sbjct: 76 EIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADM 135
Query: 512 ARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570
+ + G ++L+ TPGRL D K E L F +E L+LDEADR+LD G+++ + + L
Sbjct: 136 NTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL 195
Query: 571 KKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ-IDAADSTDIHNTTDSLVIPDSLKQHF 629
KQ+ ++ L SAT T AV LA L+N ++ I A+S + T S + + LK
Sbjct: 196 PKQR---RTGLFSATQTQAVADLAKAGLRNAMEVISGAESK---SKTSSGLYCEYLKCE- 248
Query: 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG-ENIAFF 688
+LV L + E++ K++VF T DY +LS + ++I+FF
Sbjct: 249 -ADQKSSQLVHL----------LIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFF 297
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748
HG M Q R +F SGVL+CTDVAARGLD+P +D++VQY P ++HRV
Sbjct: 298 STHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRV 357
Query: 749 GRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSV 797
GRTAR+ +G +++FL+P E VE ++ RR+ ++E K C +N V
Sbjct: 358 GRTARMERQGRAIVFLMPKETDYVEFMRIRRVPLQERK---CSENASDV 403
Score = 250 (93.1 bits), Expect = 4.3e-19, Sum P(3) = 4.3e-19
Identities = 61/175 (34%), Positives = 98/175 (56%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T VQ +I + DV+V + TGSGKTLA+ +P I+ ++ + + VII PT
Sbjct: 40 TPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPT 99
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLDHCKH 125
REL+ Q ++ + + L GG +++++ + + G ++L+ TPGRL D K
Sbjct: 100 RELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKR 159
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
E L F +E L+LDEADR+LD G+++ + + L KQ+ ++ L SAT T A
Sbjct: 160 MEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR---RTGLFSATQTQA 211
Score = 124 (48.7 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
K E L F +E L+LDEADR+LD G+++ + + L KQ+ ++ L SAT T AV
Sbjct: 158 KRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQR---RTGLFSATQTQAVAD 214
Query: 245 LAGMTLQNPIQ-IDAADS 261
LA L+N ++ I A+S
Sbjct: 215 LAKAGLRNAMEVISGAES 232
Score = 54 (24.1 bits), Expect = 4.7e-53, Sum P(2) = 4.7e-53
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 812 ETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKD-LRHIFNFKQIHLGHFAK 870
E A+ + + A+ + +L KG ++V F +Y + +IF++K + +G A
Sbjct: 398 ENASDVIPIIRSLAIKDRAVLE----KGLQAFVSFVRAYKEHHCSYIFSWKGLEIGKLAM 453
Query: 871 SFALRDAPSV 880
+ + P +
Sbjct: 454 GYGILSFPYI 463
Score = 48 (22.0 bits), Expect = 4.3e-19, Sum P(3) = 4.3e-19
Identities = 32/111 (28%), Positives = 50/111 (45%)
Query: 221 ILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQ-IDAADSTDIHNTTDSLVIPDSLKQ 279
I+ + Q ++ L SAT T AV LA L+N ++ I A+S + T S + + LK
Sbjct: 191 IISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESK---SKTSSGLYCEYLKC 247
Query: 280 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 330
+LV L + E++ K++VF T DY +LS
Sbjct: 248 E--ADQKSSQLVHL----------LIENKNKKLVVFFMTCACVDYWGLVLS 286
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 356 (130.4 bits), Expect = 4.5e-29, P = 4.5e-29
Identities = 94/254 (37%), Positives = 138/254 (54%)
Query: 392 YEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPII 451
+ E P P K L IT +T +Q+ I L G D+L ++TGSGKTLA+ +P+I
Sbjct: 41 FAELPLTQP-TKSALKNAHFIT-LTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLI 98
Query: 452 QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
+ L R K + DG+ A++I PTRELA+QT E K+ + ++ + GG K EK
Sbjct: 99 ENLY--RKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSA-GLIIGGNNYKEEK 155
Query: 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571
R+ + ++ILV TPGRLL H S ++ L+LDEADRILD G+ + + L
Sbjct: 156 ERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLP 214
Query: 572 KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 631
+ Q++L SAT T +V+ LA ++LQNP D +H D+ P +L Q ++
Sbjct: 215 VHR---QTMLFSATQTKSVKDLARLSLQNP------DFISVHEN-DTSSTPSNLNQFYLT 264
Query: 632 TPPKLRLVALASFI 645
P +L L FI
Sbjct: 265 VPLTEKLDILFGFI 278
Score = 333 (122.3 bits), Expect = 5.7e-52, Sum P(2) = 5.7e-52
Identities = 78/212 (36%), Positives = 115/212 (54%)
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
Q++L SAT T +V+ LA ++LQNP D +H D+ P +L Q ++ P +
Sbjct: 218 QTMLFSATQTKSVKDLARLSLQNP------DFISVHEN-DTSSTPSNLNQFYLTVPLTEK 270
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
L L FI + K +VF+++ + E + I+ LHG Q+
Sbjct: 271 LDILFGFI-------RTHLKFKTIVFLSSCKQVRFVYETFRR-MRPGISLLHLHGKQKQT 322
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757
RTEV F S + VL CTD+ ARGLD P VDW++Q AP Y+HRVGRTAR
Sbjct: 323 TRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRS 382
Query: 758 GSSLLFLIPSEVKLVEELQNRRIRIEEIKLKD 789
G++LL L+PSE ++ L++++I +E I +KD
Sbjct: 383 GNALLLLLPSEEAFLKRLESKKIAVERINVKD 414
Score = 291 (107.5 bits), Expect = 5.7e-52, Sum P(2) = 5.7e-52
Identities = 69/173 (39%), Positives = 102/173 (58%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T +Q+ I L G D+L ++TGSGKTLA+ +P+I+ L R K + DG+ A++I P
Sbjct: 62 LTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLY--RKKWTSLDGLGALVISP 119
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA+QT E K+ + ++ + GG K EK R+ + ++ILV TPGRLL H
Sbjct: 120 TRELAIQTFETLVKIGRLHSFSA-GLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQ 177
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
S ++ L+LDEADRILD G+ + + L + Q++L SAT T
Sbjct: 178 AVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHR---QTMLFSATQT 227
Score = 135 (52.6 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 69/269 (25%), Positives = 115/269 (42%)
Query: 42 IQKLQEMRPKISRKDGIYAVIIL--PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 99
I++L +S +A + L PT+ AL+ T L + +PS L G + +
Sbjct: 24 IEELNSQIEALSETVDHFAELPLTQPTKS-ALKNAHFIT-LTEIQKQCIPSALKGRDILG 81
Query: 100 SEKARIRKGISILVATPGRLLDHCKHTE-----TLKFSKVEHLVLDEADRILDQGYERDI 154
+ K K ++ +V L K T L S L + + ++ G
Sbjct: 82 AAKTGSGKTLAFIVPLIENLYRK-KWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSF 140
Query: 155 AEFLEI----LKKQKPQFQSILLSATLTPATCWCKHTETLKF--SKVEHLVLDEADRILD 208
+ L I K++K + + + TP + + F S ++ L+LDEADRILD
Sbjct: 141 SAGLIIGGNNYKEEKERLSRMNI-LVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILD 199
Query: 209 QGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTT 268
G+ + + L + Q++L SAT T +V+ LA ++LQNP D +H
Sbjct: 200 MGFRTTLDAIVSSLPVHR---QTMLFSATQTKSVKDLARLSLQNP------DFISVHEN- 249
Query: 269 DSLVIPDSLKQHFIVTPPKLRLVALASFI 297
D+ P +L Q ++ P +L L FI
Sbjct: 250 DTSSTPSNLNQFYLTVPLTEKLDILFGFI 278
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 389 (142.0 bits), Expect = 1.2e-32, P = 1.2e-32
Identities = 106/302 (35%), Positives = 170/302 (56%)
Query: 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR 463
K L E ++ +T +Q+ +I L G D++ ++TGSGKTLA+ IP+I+ L +R KI+
Sbjct: 61 KGLKEATFVS-LTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIESL--IRNKITE 117
Query: 464 KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
DG+ A+I+ PTRELA+Q E+ TK+ K T+ +TGG+ ++ EK R+ + ++ILV
Sbjct: 118 YDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSA-GLVTGGKDVQFEKERVSR-MNILVG 175
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
TPGR+ H ++ S ++ LVLDEADR LD G+++ I L L + Q++L S
Sbjct: 176 TPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTR---QTLLFS 232
Query: 584 ATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALAS 643
AT + +V LA ++L NP +I + ++ T P+SL+Q+++ P +L L S
Sbjct: 233 ATQSESVNDLARLSLTNPNKIGVSSDQEVSAT------PESLEQYYVKVPLDEKLDVLWS 286
Query: 644 FILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL-GENIA-FFKLHGSMSQSERTE 701
FI + SK+LVF ++ Y E T+ G ++ + H S+ E T
Sbjct: 287 FIKSHLK-------SKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTM 339
Query: 702 VF 703
F
Sbjct: 340 KF 341
Score = 318 (117.0 bits), Expect = 8.6e-52, Sum P(2) = 8.6e-52
Identities = 80/217 (36%), Positives = 117/217 (53%)
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
Q++L SAT + +V LA ++L NP +I + ++ T P+SL+Q+++ P +
Sbjct: 227 QTLLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSAT------PESLEQYYVKVPLDEK 280
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
L L SFI + SK+LVF ++ Y E T L I+ KL+G Q+
Sbjct: 281 LDVLWSFIKSHLK-------SKILVFFSSSKQVQYTYETFRT-LQPGISLMKLYGRHKQT 332
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757
R E F + L TD+ ARGLD P +DW+VQ P + YVHRVGR+AR G +
Sbjct: 333 SRLETTMKFSQAQHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRK 392
Query: 758 GSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNL 794
G SLL L+PSE EE +R++I +I+ K L N+
Sbjct: 393 GKSLLMLLPSE----EEGMLKRLKIHKIEPK--LMNI 423
Score = 306 (112.8 bits), Expect = 8.6e-52, Sum P(2) = 8.6e-52
Identities = 71/171 (41%), Positives = 110/171 (64%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T +Q+ +I L G D++ ++TGSGKTLA+ IP+I+ L +R KI+ DG+ A+I+ P
Sbjct: 71 LTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIESL--IRNKITEYDGLAALIVSP 128
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA+Q E+ TK+ K T+ +TGG+ ++ EK R+ + ++ILV TPGR+ H
Sbjct: 129 TRELAVQIFEVLTKIGKYNTFSA-GLVTGGKDVQFEKERVSR-MNILVGTPGRISQHLNE 186
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
++ S ++ LVLDEADR LD G+++ I L L + Q++L SAT
Sbjct: 187 AVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTR---QTLLFSAT 234
Score = 153 (58.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 46/142 (32%), Positives = 74/142 (52%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
++ S ++ LVLDEADR LD G+++ I L L + Q++L SAT + +V LA ++
Sbjct: 190 METSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTR---QTLLFSATQSESVNDLARLS 246
Query: 250 LQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 309
L NP +I + ++ T P+SL+Q+++ P +L L SFI +
Sbjct: 247 LTNPNKIGVSSDQEVSAT------PESLEQYYVKVPLDEKLDVLWSFIKSHLK------- 293
Query: 310 SKMLVFMATQDMADYHTELLST 331
SK+LVF ++ Y E T
Sbjct: 294 SKILVFFSSSKQVQYTYETFRT 315
Score = 46 (21.3 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 514 IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE 560
++ GIS L+ GR + T+KFS+ +H L D I+ +G +
Sbjct: 316 LQPGIS-LMKLYGRHKQTSRLETTMKFSQAQHACLFATD-IVARGLD 360
Score = 39 (18.8 bits), Expect = 9.2e-22, Sum P(3) = 9.2e-22
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYE 212
T+KFS+ +H L D I+ +G +
Sbjct: 338 TMKFSQAQHACLFATD-IVARGLD 360
Score = 37 (18.1 bits), Expect = 9.2e-22, Sum P(3) = 9.2e-22
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 498 PSWLTGGEKMKSE 510
P W GG+ KS+
Sbjct: 725 PKWFEGGDDDKSK 737
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 354 (129.7 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 95/249 (38%), Positives = 146/249 (58%)
Query: 400 PFMKKNLNEGMNITQ---VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
P KK L +G+ Q VT +Q+ +I L G DVL ++TGSGKTLA+ +P+++ L
Sbjct: 75 PLSKKTL-KGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 133
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
++ + DG+ +II PTRELA QT E+ K+ K+ + + GG+ +K E RI
Sbjct: 134 LQ--WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSA-GLIIGGKDLKHEAERINN 190
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
I+ILV TPGRLL H T + ++ LVLDEADRILD G+ + +E L K++
Sbjct: 191 -INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKR-- 247
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636
Q++L SAT T +V+ LA ++L+NP I + ++T P +L+Q++IV +
Sbjct: 248 -QTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAK-YST------PATLEQNYIVCELQQ 299
Query: 637 RLVALASFI 645
++ L SF+
Sbjct: 300 KISVLYSFL 308
Score = 312 (114.9 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 84/265 (31%), Positives = 143/265 (53%)
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
I++ + Q++L SAT T +V+ LA ++L+NP I + ++T P +L+Q+
Sbjct: 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAK-YST------PATLEQN 291
Query: 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688
+IV + ++ L SF+ + K +VF ++ Y + L I+
Sbjct: 292 YIVCELQQKISVLYSFLRSHLKK-------KSIVFFSSCKEVQYLYRVFCR-LRPGISIL 343
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748
LHG Q R EV+ F +S VL TD+AARGLD P V+W++Q+ P + Y+HR
Sbjct: 344 ALHGRQQQMRRMEVYNEFVRKRSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRA 403
Query: 749 GRTARVGHEGSSLLFLIPSEVK-LVEELQNRRIRIEEIKLKDCLQNLLSV--KMEGDLSR 805
GRTAR +G +LL L+PSE K +V++L +++ ++EIK+ + L+ V K+E L++
Sbjct: 404 GRTARYKEDGEALLILLPSEEKGMVQQLLQKKVPVKEIKINP--EKLIDVQKKLESFLAQ 461
Query: 806 LADGNVETAATALQMSFESAVLQQK 830
D +++ A +S+ +V K
Sbjct: 462 --DKDLKERAQRCFVSYIRSVYLMK 484
Score = 303 (111.7 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 77/197 (39%), Positives = 114/197 (57%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
VT +Q+ +I L G DVL ++TGSGKTLA+ +P+++ L ++ + DG+ +II P
Sbjct: 92 VTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ--WTSTDGLGVLIISP 149
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA QT E+ K+ K+ + + GG+ +K E RI I+ILV TPGRLL H
Sbjct: 150 TRELAYQTFEVLRKVGKNHDFSA-GLIIGGKDLKHEAERINN-INILVCTPGRLLQHMDE 207
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCK 185
T + ++ LVLDEADRILD G+ + +E L K++ Q++L SAT T + K
Sbjct: 208 TICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKR---QTLLFSATQTKSV---K 261
Query: 186 HTETLKFSKVEHLVLDE 202
L E++ + E
Sbjct: 262 DLARLSLKNPEYIWVHE 278
Score = 136 (52.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 45/139 (32%), Positives = 76/139 (54%)
Query: 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKF--SKVEHLVLDEADRILDQGYERDIAEF 218
LK + + +I + TP ET+ F + ++ LVLDEADRILD G+ +
Sbjct: 181 LKHEAERINNINI-LVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAI 239
Query: 219 LEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 278
+E L K++ Q++L SAT T +V+ LA ++L+NP I + ++T P +L+
Sbjct: 240 IENLPKKR---QTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAK-YST------PATLE 289
Query: 279 QHFIVTPPKLRLVALASFI 297
Q++IV + ++ L SF+
Sbjct: 290 QNYIVCELQQKISVLYSFL 308
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 351 (128.6 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 82/209 (39%), Positives = 124/209 (59%)
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473
++T +QQ +I I G DVL +QTG+GKT A+A+PI+QK+ E P + K +I+
Sbjct: 23 KMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVE-NPSETLKSNTRVLILT 81
Query: 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
PTRELA Q E K + V + + GG K++++ ++++G I+VATPGRLL+H
Sbjct: 82 PTRELAAQVAENVEAYSKYLNFSVLT-IYGGVKVETQAQKLKRGADIIVATPGRLLEHLT 140
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
L S V+ LVLDEADR+LD G+ DI + L+ + K++ Q++L SAT + AV++L
Sbjct: 141 ACN-LSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKR---QNLLFSATFSSAVKKL 196
Query: 594 AGMTLQNPIQIDAADSTDIHNTTDSLVIP 622
A + P I A +T +V P
Sbjct: 197 ANEMMIKPQVISADKQNTTADTVSQVVYP 225
Score = 329 (120.9 bits), Expect = 1.4e-28, P = 1.4e-28
Identities = 91/266 (34%), Positives = 146/266 (54%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
++T +QQ +I I G DVL +QTG+GKT A+A+PI+QK+ E P + K +I+
Sbjct: 23 KMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVE-NPSETLKSNTRVLILT 81
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA Q E K + V + + GG K++++ ++++G I+VATPGRLL+H
Sbjct: 82 PTRELAAQVAENVEAYSKYLNFSVLT-IYGGVKVETQAQKLKRGADIIVATPGRLLEHLT 140
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWC 184
L S V+ LVLDEADR+LD G+ DI + L+ + K++ Q++L SAT + A
Sbjct: 141 ACN-LSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKR---QNLLFSATFSSAVKKL 196
Query: 185 KHTETLKFSKV----EHLVLDEADRILDQGYERDIAEFL-EILKKQKPQFQSVLLSATLT 239
+ +K + ++ D +++ +R E L E++ K+ Q Q ++ +AT
Sbjct: 197 ANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGKKNWQ-QVLVFTAT-- 253
Query: 240 PAVQRLAGMTLQNPIQIDAADSTDIH 265
R A TL + +D S +H
Sbjct: 254 ----RDAADTLVKELNLDGIPSEVVH 275
Score = 213 (80.0 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 70/232 (30%), Positives = 114/232 (49%)
Query: 609 STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVA-LASFILGKCQNVNEDEESKMLVFMATQ 667
S D NTT D++ Q +V P + R L S ++GK +N + +LVF AT+
Sbjct: 208 SADKQNTT-----ADTVSQ--VVYPVEQRRKRELLSELIGK-KNWQQ-----VLVFTATR 254
Query: 668 DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP 727
D AD + L+ + I +HG +Q R + F S K VL+ T+VAARGLD+P
Sbjct: 255 DAADTLVKELNL---DGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDIP 311
Query: 728 LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN------RRIR 781
++++V + P + DYVHR+GRT R G G ++ F+ E + + +++ RRI
Sbjct: 312 SLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLIGQKIRRIT 371
Query: 782 IE--EIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKI 831
+ E+ +D L L + + NV A + S + ++ K+
Sbjct: 372 VPGYEVGSRDLLLKQLQTRRSFAKKQQRQDNVSEQMIA-EKSMQGRRVKMKV 422
Score = 159 (61.0 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 52/135 (38%), Positives = 78/135 (57%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L S V+ LVLDEADR+LD G+ DI + L+ + K++ Q++L SAT + AV++LA
Sbjct: 144 LSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKR---QNLLFSATFSSAVKKLANEM 200
Query: 250 LQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVA-LASFILGKCQNVNEDE 308
+ P Q+ +AD NTT D++ Q +V P + R L S ++GK +N +
Sbjct: 201 MIKP-QVISADK---QNTT-----ADTVSQ--VVYPVEQRRKRELLSELIGK-KNWQQ-- 246
Query: 309 ESKMLVFMATQDMAD 323
+LVF AT+D AD
Sbjct: 247 ---VLVFTATRDAAD 258
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 343 (125.8 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 91/262 (34%), Positives = 139/262 (53%)
Query: 384 EALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKT 443
E ++ +EE I +KK L E +N +T +Q I L G D+L ++TGSGKT
Sbjct: 142 EHFYSELKFEEL-NICDALKKGLKE-LNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKT 199
Query: 444 LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG 503
LA+ +P I L + K K+G +II PTREL LQ ++ LCK + G
Sbjct: 200 LAFLVPSINILYNI--KFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQ-TNGIIIG 256
Query: 504 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 563
G EK + GI+IL+ATPGRLLDH ++T+ + + L++DEADR+L G+E +I
Sbjct: 257 GMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEI 316
Query: 564 AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD 623
++ L K++ Q+ L SAT T V+ L ++LQ PI I+ T + +
Sbjct: 317 NLIIKRLPKKR---QTALFSATQTTKVESLIRLSLQKPIFIEV---------TTKIATVE 364
Query: 624 SLKQHFIVTPPKLRLVALASFI 645
L+Q + + R + L +F+
Sbjct: 365 RLQQGYALVDEDKRFLLLFTFL 386
Score = 293 (108.2 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 70/178 (39%), Positives = 102/178 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+N +T +Q I L G D+L ++TGSGKTLA+ +P I L + K K+G
Sbjct: 166 LNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINILYNI--KFLPKNGTGV 223
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+II PTREL LQ ++ LCK + GG EK + GI+IL+ATPGRLL
Sbjct: 224 LIISPTRELCLQIYQVCKDLCKYIPQ-TNGIIIGGMSRNEEKKKFIHGINILIATPGRLL 282
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T+ + + L++DEADR+L G+E +I ++ L K++ Q+ L SAT T
Sbjct: 283 DHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKR---QTALFSATQT 337
Score = 237 (88.5 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 55/171 (32%), Positives = 99/171 (57%)
Query: 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675
T + + L+Q + + R + L +F+ +N+++ K++VF ++ +
Sbjct: 357 TTKIATVERLQQGYALVDEDKRFLLLFTFLK---KNMSK----KIMVFFNNCMSVQFYND 409
Query: 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY 735
LL+ + +I + +HG Q++R + F F + K +L+CT+VAARGLD+P V++I+QY
Sbjct: 410 LLNYI---DIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQY 466
Query: 736 TAPSSSTDYVHRVGRTARVGHE--GSSLLFLIPSEVKLVEELQNRRIRIEE 784
P S +Y+HRVGRT R G + GS+++FL+ E+K + L+ I I +
Sbjct: 467 DPPDDSKEYIHRVGRTCR-GQDSNGSAIIFLMKHELKFLNYLKFYNIPINQ 516
Score = 110 (43.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 32/113 (28%), Positives = 59/113 (52%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ + + L++DEADR+L G+E +I ++ L K++ Q+ L SAT T V+
Sbjct: 286 QNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKR---QTALFSATQTTKVES 342
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 297
L ++LQ PI I+ T + + L+Q + + R + L +F+
Sbjct: 343 LIRLSLQKPIFIEV---------TTKIATVERLQQGYALVDEDKRFLLLFTFL 386
Score = 66 (28.3 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q +S V + LH A + + S++ Y +Y+ L+ +F+ ++L +K+F L
Sbjct: 527 IQSHIQSIVTKNFHLHKMAREAFKSYLNGYITYA--LKDVFDVNNLNLLLTSKNFGLEVP 584
Query: 878 PSV 880
P V
Sbjct: 585 PKV 587
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 343 (125.8 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 91/262 (34%), Positives = 139/262 (53%)
Query: 384 EALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKT 443
E ++ +EE I +KK L E +N +T +Q I L G D+L ++TGSGKT
Sbjct: 142 EHFYSELKFEEL-NICDALKKGLKE-LNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKT 199
Query: 444 LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG 503
LA+ +P I L + K K+G +II PTREL LQ ++ LCK + G
Sbjct: 200 LAFLVPSINILYNI--KFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQ-TNGIIIG 256
Query: 504 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 563
G EK + GI+IL+ATPGRLLDH ++T+ + + L++DEADR+L G+E +I
Sbjct: 257 GMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEI 316
Query: 564 AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD 623
++ L K++ Q+ L SAT T V+ L ++LQ PI I+ T + +
Sbjct: 317 NLIIKRLPKKR---QTALFSATQTTKVESLIRLSLQKPIFIEV---------TTKIATVE 364
Query: 624 SLKQHFIVTPPKLRLVALASFI 645
L+Q + + R + L +F+
Sbjct: 365 RLQQGYALVDEDKRFLLLFTFL 386
Score = 293 (108.2 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 70/178 (39%), Positives = 102/178 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+N +T +Q I L G D+L ++TGSGKTLA+ +P I L + K K+G
Sbjct: 166 LNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINILYNI--KFLPKNGTGV 223
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+II PTREL LQ ++ LCK + GG EK + GI+IL+ATPGRLL
Sbjct: 224 LIISPTRELCLQIYQVCKDLCKYIPQ-TNGIIIGGMSRNEEKKKFIHGINILIATPGRLL 282
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH ++T+ + + L++DEADR+L G+E +I ++ L K++ Q+ L SAT T
Sbjct: 283 DHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKR---QTALFSATQT 337
Score = 237 (88.5 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 55/171 (32%), Positives = 99/171 (57%)
Query: 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675
T + + L+Q + + R + L +F+ +N+++ K++VF ++ +
Sbjct: 357 TTKIATVERLQQGYALVDEDKRFLLLFTFLK---KNMSK----KIMVFFNNCMSVQFYND 409
Query: 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY 735
LL+ + +I + +HG Q++R + F F + K +L+CT+VAARGLD+P V++I+QY
Sbjct: 410 LLNYI---DIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQY 466
Query: 736 TAPSSSTDYVHRVGRTARVGHE--GSSLLFLIPSEVKLVEELQNRRIRIEE 784
P S +Y+HRVGRT R G + GS+++FL+ E+K + L+ I I +
Sbjct: 467 DPPDDSKEYIHRVGRTCR-GQDSNGSAIIFLMKHELKFLNYLKFYNIPINQ 516
Score = 110 (43.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 32/113 (28%), Positives = 59/113 (52%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ + + L++DEADR+L G+E +I ++ L K++ Q+ L SAT T V+
Sbjct: 286 QNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKR---QTALFSATQTTKVES 342
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 297
L ++LQ PI I+ T + + L+Q + + R + L +F+
Sbjct: 343 LIRLSLQKPIFIEV---------TTKIATVERLQQGYALVDEDKRFLLLFTFL 386
Score = 66 (28.3 bits), Expect = 1.6e-50, Sum P(3) = 1.6e-50
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q +S V + LH A + + S++ Y +Y+ L+ +F+ ++L +K+F L
Sbjct: 527 IQSHIQSIVTKNFHLHKMAREAFKSYLNGYITYA--LKDVFDVNNLNLLLTSKNFGLEVP 584
Query: 878 PSV 880
P V
Sbjct: 585 PKV 587
>DICTYBASE|DDB_G0291588 [details] [associations]
symbol:ddx55 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0291588 GO:GO:0005524
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14809
OMA:HEKKVET RefSeq:XP_635318.1 ProteinModelPortal:Q54EC2
STRING:Q54EC2 EnsemblProtists:DDB0234215 GeneID:8628262
KEGG:ddi:DDB_G0291588 ProtClustDB:CLSZ2429585 Uniprot:Q54EC2
Length = 663
Score = 441 (160.3 bits), Expect = 3.8e-50, Sum P(3) = 3.8e-50
Identities = 104/301 (34%), Positives = 169/301 (56%)
Query: 501 LTGGEKMKSEKARIRK-GISILVATPGR----LLDHCKHTETLKFSKVEHLVLDEADRIL 555
L GG + + + G +IL+ TPGR L ++ + KF + E L+LDEADR+L
Sbjct: 161 LIGGTDIYQDLVNYKNYGGNILIGTPGRTDEFLTRVVRNDQQFKFKEFEMLILDEADRLL 220
Query: 556 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNT 615
D G+ I L L KQ+ ++ L SAT T V+ LA ++NP ++ S T
Sbjct: 221 DMGFHLPINSILLKLPKQR---RTGLFSATQTSEVKELARTGMRNPFKVSV--SVKHIET 275
Query: 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675
+ IP +L +++ P + RL L F+L N +++K++++ T DY +
Sbjct: 276 HEDQSIPTTLDNRYMIVPVEERLNQLVHFLL------NHIDKNKIIIYFLTCSTVDYFFK 329
Query: 676 LLSTV-LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734
+L +V + FF LHG S+R +VF +F +G L+ TD+AARGLD+P VDW++Q
Sbjct: 330 ILQSVKVLSGKPFFSLHGKAPHSQRIKVFDSFSQATNGCLLSTDLAARGLDIPNVDWVLQ 389
Query: 735 YTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNL 794
Y +P +VHR+GRTAR+G +G++L+FL P E +E L+ +++ + E+ + + N+
Sbjct: 390 YDSPQDPKAFVHRIGRTARMGRDGNALIFLSPEEDSYIEFLKIKKVPLVEMVKAENVTNV 449
Query: 795 L 795
L
Sbjct: 450 L 450
Score = 170 (64.9 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 45/147 (30%), Positives = 77/147 (52%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++ + KF + E L+LDEADR+LD G+ I L L KQ+ ++ L SAT T V+
Sbjct: 198 RNDQQFKFKEFEMLILDEADRLLDMGFHLPINSILLKLPKQR---RTGLFSATQTSEVKE 254
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304
LA ++NP ++ S T + IP +L +++ P + RL L F+L
Sbjct: 255 LARTGMRNPFKVSV--SVKHIETHEDQSIPTTLDNRYMIVPVEERLNQLVHFLL------ 306
Query: 305 NEDEESKMLVFMATQDMADYHTELLST 331
N +++K++++ T DY ++L +
Sbjct: 307 NHIDKNKIIIYFLTCSTVDYFFKILQS 333
Score = 142 (55.0 bits), Expect = 3.8e-50, Sum P(3) = 3.8e-50
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ ++ VQ I + DVLV + TGSGKTLA+ IPII+K+ + + + D I +
Sbjct: 28 LGFKSMSPVQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIEKILKRETNLKKTD-IAS 86
Query: 61 VIILPTRELALQTLEI 76
+II PTRELA+Q ++
Sbjct: 87 IIISPTRELAIQIQQV 102
Score = 142 (55.0 bits), Expect = 3.8e-50, Sum P(3) = 3.8e-50
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
+ ++ VQ I + DVLV + TGSGKTLA+ IPII+K+ + + + D I +
Sbjct: 28 LGFKSMSPVQSAVIPLFMSNKDVLVEACTGSGKTLAFVIPIIEKILKRETNLKKTD-IAS 86
Query: 470 VIILPTRELALQTLEI 485
+II PTRELA+Q ++
Sbjct: 87 IIISPTRELAIQIQQV 102
Score = 115 (45.5 bits), Expect = 7.6e-13, Sum P(3) = 7.6e-13
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 92 LTGGEKMKSEKARIRK-GISILVATPGR----LLDHCKHTETLKFSKVEHLVLDEADRIL 146
L GG + + + G +IL+ TPGR L ++ + KF + E L+LDEADR+L
Sbjct: 161 LIGGTDIYQDLVNYKNYGGNILIGTPGRTDEFLTRVVRNDQQFKFKEFEMLILDEADRLL 220
Query: 147 DQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
D G+ I L L KQ+ ++ L SAT T
Sbjct: 221 DMGFHLPINSILLKLPKQR---RTGLFSATQT 249
Score = 46 (21.3 bits), Expect = 3.8e-50, Sum P(3) = 3.8e-50
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 838 KGYTSWVRFYASYSKDL-RHIFNFKQIHLGHFAKSFALRDAP 878
KG + V Y + L +IF F ++++G A F L P
Sbjct: 466 KGVIAMVSHVRGYKEHLCPYIFVFHRLNIGLLATGFGLLYLP 507
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 345 (126.5 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 103/302 (34%), Positives = 162/302 (53%)
Query: 353 KTEVKSGPISSLFQNNPDIPNVPTRRL-KPVSEALFAPTSYEEFPGIHPFMKKNLNEGM- 410
KT+VK S + + + ++ ++L SE P +F P KK L +G+
Sbjct: 31 KTKVKRSQKSKVKKRDWEVERENIKKLVDKYSE--INPKEAVKFSDF-PLSKKTL-KGLL 86
Query: 411 --NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468
Q T +Q+ +I L G DVL ++TGSGKTLA+ IP+++ L R + + DG+
Sbjct: 87 EAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECLY--REQWTAMDGLG 144
Query: 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 528
A+II PTRELA QT E+ K+ K+ + + GG+ +K E +I + +I++ TPGRL
Sbjct: 145 ALIISPTRELAYQTFEVLRKVGKNHEFSA-GLVIGGKDLKDESEKIHR-TNIIICTPGRL 202
Query: 529 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588
L H T T S + LVLDEADRILD G+ + +E L K + Q++L SAT T
Sbjct: 203 LQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSR---QTLLFSATQTR 259
Query: 589 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 648
+V+ LA ++L++P + +H P +L+Q+++V ++ L SF+
Sbjct: 260 SVKDLARLSLKDP------EYVWVHEQA-KFSTPATLEQNYVVCELHQKVNMLYSFLRSH 312
Query: 649 CQ 650
Q
Sbjct: 313 LQ 314
Score = 306 (112.8 bits), Expect = 5.2e-50, Sum P(2) = 5.2e-50
Identities = 82/254 (32%), Positives = 135/254 (53%)
Query: 556 DQGYERDIAEFLEILKKQKPQF-QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHN 614
D+ + A+ L + + P+ Q++L SAT T +V+ LA ++L++P + +H
Sbjct: 226 DRILDMGFADTLNAIVENLPKSRQTLLFSATQTRSVKDLARLSLKDP------EYVWVHE 279
Query: 615 TTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 674
P +L+Q+++V ++ L SF+ Q K++VF A Y
Sbjct: 280 QA-KFSTPATLEQNYVVCELHQKVNMLYSFLRSHLQK-------KIIVFFACCKEVQYLF 331
Query: 675 ELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734
+ L I+ LHG Q +R EV+ F S VL TD+AARGLD P V+W++Q
Sbjct: 332 RIFCR-LRPGISVLALHGKQQQMKRVEVYNDFVRKTSAVLFATDIAARGLDFPAVNWVLQ 390
Query: 735 YTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVK-LVEELQNRRIRIEEIKLKDCLQN 793
+ P + Y+HRVGRTAR G +LL L+PSE K ++ +LQ +++ I +I++ +
Sbjct: 391 FDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGMISQLQEKKVPINKIQVNP--EK 448
Query: 794 LLSV--KMEGDLSR 805
L+SV K+E L++
Sbjct: 449 LMSVQQKLEAFLAQ 462
Score = 304 (112.1 bits), Expect = 5.2e-50, Sum P(2) = 5.2e-50
Identities = 74/174 (42%), Positives = 106/174 (60%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
Q T +Q+ +I L G DVL ++TGSGKTLA+ IP+++ L R + + DG+ A+II
Sbjct: 92 QPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECLY--REQWTAMDGLGALIIS 149
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA QT E+ K+ K+ + + GG+ +K E +I + +I++ TPGRLL H
Sbjct: 150 PTRELAYQTFEVLRKVGKNHEFSA-GLVIGGKDLKDESEKIHR-TNIIICTPGRLLQHMD 207
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
T T S + LVLDEADRILD G+ + +E L K + Q++L SAT T
Sbjct: 208 ETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSR---QTLLFSATQT 258
>TAIR|locus:2160225 [details] [associations]
symbol:AT5G54910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AB005232 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
IPI:IPI00527032 RefSeq:NP_200302.1 UniGene:At.29471
ProteinModelPortal:Q9FFT9 SMR:Q9FFT9 STRING:Q9FFT9 PaxDb:Q9FFT9
PRIDE:Q9FFT9 EnsemblPlants:AT5G54910.1 GeneID:835582
KEGG:ath:AT5G54910 GeneFarm:988 TAIR:At5g54910 InParanoid:Q9FFT9
OMA:PEDGVGC PhylomeDB:Q9FFT9 ProtClustDB:CLSN2686959
Genevestigator:Q9FFT9 GermOnline:AT5G54910 Uniprot:Q9FFT9
Length = 739
Score = 335 (123.0 bits), Expect = 9.1e-27, P = 9.1e-27
Identities = 88/243 (36%), Positives = 136/243 (55%)
Query: 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKIS 462
K+ L + + +T VQ +I L G D+L ++TGSGKTLA+ IPI++KL R + S
Sbjct: 83 KRGLKDAKYV-DMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLH--RERWS 139
Query: 463 RKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILV 522
+DG+ +II PTRELA QT + K+ K + + G E + EK R+ + ++ILV
Sbjct: 140 PEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHE-MNILV 198
Query: 523 ATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILL 582
PGRLL H T + +++ L+LDEADR+LD ++ + + L K + Q++L
Sbjct: 199 CAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHR---QTLLF 255
Query: 583 SATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALA 642
SAT T V+ LA ++L++P I +H + P SL Q ++ P + +L L
Sbjct: 256 SATQTKKVKDLARLSLRDPEYIS------VHAEAVTAT-PTSLMQTVMIVPVEKKLDMLW 308
Query: 643 SFI 645
SFI
Sbjct: 309 SFI 311
Score = 315 (115.9 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 87/222 (39%), Positives = 124/222 (55%)
Query: 567 LEILKKQKPQF-QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625
L+ + Q P+ Q++L SAT T V+ LA ++L++P I +H + P SL
Sbjct: 239 LDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYIS------VHAEAVTAT-PTSL 291
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685
Q ++ P + +L L SFI ++N S++LVF++T+ + E + L I
Sbjct: 292 MQTVMIVPVEKKLDMLWSFIK---THLN----SRILVFLSTKKQVKFVHEAFNK-LRPGI 343
Query: 686 AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP-LVDWIVQYTAPSSSTDY 744
LHG MSQ +R V+ F +S VL CTDV ARGLD VDW+VQ P Y
Sbjct: 344 PLKSLHGKMSQEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASY 402
Query: 745 VHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
+HRVGRTAR +G SLLFL PSE K++E+LQ ++ I+ IK
Sbjct: 403 IHRVGRTARFYTQGKSLLFLTPSEEKMIEKLQEAKVPIKLIK 444
Score = 291 (107.5 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 69/173 (39%), Positives = 103/173 (59%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T VQ +I L G D+L ++TGSGKTLA+ IPI++KL R + S +DG+ +II P
Sbjct: 94 MTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLH--RERWSPEDGVGCIIISP 151
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA QT + K+ K + + G E + EK R+ + ++ILV PGRLL H
Sbjct: 152 TRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHE-MNILVCAPGRLLQHMDE 210
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
T + +++ L+LDEADR+LD ++ + + L K + Q++L SAT T
Sbjct: 211 TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHR---QTLLFSATQT 260
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 353 (129.3 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 94/249 (37%), Positives = 146/249 (58%)
Query: 400 PFMKKNLNEGMNITQ---VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
P KK L +G+ Q VT +Q+ +I L G DVL ++TGSGKTLA+ +P+++ L
Sbjct: 75 PLSKKTL-KGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 133
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
++ + DG+ +II PTRELA QT E+ K+ K+ + + GG+ +K E RI
Sbjct: 134 LQ--WTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSA-GLIIGGKDLKHEAERINN 190
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
I+ILV TPGRLL H T + ++ LVLDEADRILD G+ + +E L K++
Sbjct: 191 -INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKR-- 247
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636
Q++L SAT T +V+ LA ++L+NP + + ++T P +L+Q++IV +
Sbjct: 248 -QTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAK-YST------PATLEQNYIVCELQQ 299
Query: 637 RLVALASFI 645
++ L SF+
Sbjct: 300 KISVLYSFL 308
Score = 307 (113.1 bits), Expect = 6.5e-50, Sum P(2) = 6.5e-50
Identities = 81/265 (30%), Positives = 143/265 (53%)
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
I++ + Q++L SAT T +V+ LA ++L+NP + + ++T P +L+Q+
Sbjct: 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAK-YST------PATLEQN 291
Query: 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688
+IV + ++ L SF+ + K +VF ++ Y + L ++
Sbjct: 292 YIVCELQQKISVLYSFLRSHLKK-------KSIVFFSSCKEVQYLYRVFCR-LRPGVSLL 343
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748
LHG Q R EV+ F ++ VL TD+AARGLD P V+W++Q+ P + Y+HR
Sbjct: 344 ALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRA 403
Query: 749 GRTARVGHEGSSLLFLIPSEVK-LVEELQNRRIRIEEIKLKDCLQNLLSV--KMEGDLSR 805
GRTAR +G +LL L+PSE K +V++L +++ ++EIK+ + L+ V K+E L++
Sbjct: 404 GRTARYKEDGEALLILLPSEEKGMVQQLLQKKVPVKEIKINP--EKLIDVQKKLESFLAQ 461
Query: 806 LADGNVETAATALQMSFESAVLQQK 830
D +++ A +S+ +V K
Sbjct: 462 --DQDLKERAQRCFISYIRSVYLMK 484
Score = 302 (111.4 bits), Expect = 6.5e-50, Sum P(2) = 6.5e-50
Identities = 73/173 (42%), Positives = 106/173 (61%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
VT +Q+ +I L G DVL ++TGSGKTLA+ +P+++ L ++ + DG+ +II P
Sbjct: 92 VTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ--WTSADGLGVLIISP 149
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA QT E+ K+ K+ + + GG+ +K E RI I+ILV TPGRLL H
Sbjct: 150 TRELAYQTFEVLRKVGKNHDFSA-GLIIGGKDLKHEAERINN-INILVCTPGRLLQHMDE 207
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
T + ++ LVLDEADRILD G+ + +E L K++ Q++L SAT T
Sbjct: 208 TICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKR---QTLLFSATQT 257
Score = 135 (52.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 44/139 (31%), Positives = 76/139 (54%)
Query: 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKF--SKVEHLVLDEADRILDQGYERDIAEF 218
LK + + +I + TP ET+ F + ++ LVLDEADRILD G+ +
Sbjct: 181 LKHEAERINNINI-LVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAI 239
Query: 219 LEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 278
+E L K++ Q++L SAT T +V+ LA ++L+NP + + ++T P +L+
Sbjct: 240 IENLPKKR---QTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAK-YST------PATLE 289
Query: 279 QHFIVTPPKLRLVALASFI 297
Q++IV + ++ L SF+
Sbjct: 290 QNYIVCELQQKISVLYSFL 308
Score = 55 (24.4 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q ES + Q + L A + + S++R KD + IF+ ++ + +A S L A
Sbjct: 451 VQKKLESFLAQDQDLKERAQRCFISYIRS-VYLMKD-KEIFDVSKLPISDYALSLGLAVA 508
Query: 878 PSV 880
P +
Sbjct: 509 PRI 511
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 539 (194.8 bits), Expect = 1.0e-49, Sum P(2) = 1.0e-49
Identities = 165/494 (33%), Positives = 248/494 (50%)
Query: 346 DNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKN 405
DN + + E+ S L +I ++ T+ + + A+ + +FP + +K
Sbjct: 34 DNSQKRPRQEINK---SRLAATEAEIQDLKTKYAEIDATAI---KKFAQFP-LSKKTQKA 86
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465
L E T VQ+ SI P L G DVL + TGSGKTLA+ IP+++ L K SR D
Sbjct: 87 LAES-KFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHL--FMNKWSRTD 143
Query: 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATP 525
G+ A+II PTRELA Q E K+ K + + GG+ +K E+ R+ + +IL+ TP
Sbjct: 144 GVGAIIISPTRELAYQIFETLKKVGKHHDFSA-GLIIGGKNLKFERTRMDQ-CNILICTP 201
Query: 526 GRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585
GRLL H S +E LVLDEADR LD G+++ + +E P Q++L SAT
Sbjct: 202 GRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFP---PVRQTLLFSAT 258
Query: 586 LTPAVQRLAGMTLQNPIQI---------DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636
T VQ LA + L++P+ + + + ST T L +P+ L+Q ++V +
Sbjct: 259 QTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLED 318
Query: 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696
++ L SFI + K++VF+A+ A Y E+ L L+G++ Q
Sbjct: 319 KITMLWSFIKNHLKQ-------KIIVFVASCKQAKYLYEIFCK-LRPGSPLLALYGTLHQ 370
Query: 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756
R +++ F V+ TDVA+RGLD P V+W+VQ P + Y+HR GR+AR
Sbjct: 371 DRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKT 430
Query: 757 EGSSLLFLIPSE----VKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVE 812
G LL L PSE + ++E N IR +I K VK+E L++ E
Sbjct: 431 RGECLLVLTPSEEEYMISALKEQLNIDIRCVQIDPKKLFSP--RVKIEAFLAQFP----E 484
Query: 813 TAATALQMSFESAV 826
ATA Q +F S +
Sbjct: 485 LRATA-QRAFLSYI 497
Score = 302 (111.4 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 75/172 (43%), Positives = 101/172 (58%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T VQ+ SI P L G DVL + TGSGKTLA+ IP+++ L K SR DG+ A+II PT
Sbjct: 96 TQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHL--FMNKWSRTDGVGAIIISPT 153
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E K+ K + + GG+ +K E+ R+ + +IL+ TPGRLL H
Sbjct: 154 RELAYQIFETLKKVGKHHDFSA-GLIIGGKNLKFERTRMDQ-CNILICTPGRLLQHMDEN 211
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
S +E LVLDEADR LD G+++ + +E P Q++L SAT T
Sbjct: 212 PLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIENFP---PVRQTLLFSATQT 260
Score = 143 (55.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 46/145 (31%), Positives = 75/145 (51%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252
S +E LVLDEADR LD G+++ + +E P Q++L SAT T VQ LA + L++
Sbjct: 217 STMEMLVLDEADRCLDMGFQKTLNSIIENFP---PVRQTLLFSATQTNTVQDLARLNLKD 273
Query: 253 PIQI---------DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
P+ + + + ST T L +P+ L+Q ++V + ++ L SFI +
Sbjct: 274 PVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQ 333
Query: 304 VNEDEESKMLVFMATQDMADYHTEL 328
K++VF+A+ A Y E+
Sbjct: 334 -------KIIVFVASCKQAKYLYEI 351
Score = 47 (21.6 bits), Expect = 1.0e-49, Sum P(2) = 1.0e-49
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 819 QMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAP 878
++ E+ + Q L +A + + S+++ + + + +FN + L FA+S L P
Sbjct: 472 RVKIEAFLAQFPELRATAQRAFLSYIK--SVFLMRNKRLFNVFSLDLDAFAQSLGLAVTP 529
Query: 879 SV 880
V
Sbjct: 530 RV 531
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 352 (129.0 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 84/249 (33%), Positives = 142/249 (57%)
Query: 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI 448
PT + + +K ++G + +Q +I ++ G DV+ +QTG+GKT + +
Sbjct: 5 PTKFTDLGLSEALLKAVRDKGYETP--SPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTL 62
Query: 449 PIIQKLQEMRPKISRKDGIYAVIILPTRELALQ---TLEIFTKLCKSFTWIVPSWLTGGE 505
P++Q+L + + + A+I+ PTRELA Q ++E++ K + +V GG
Sbjct: 63 PLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVV----FGGV 118
Query: 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565
K+ + AR+R+G+ +LVATPGRLLD + +KFS++E +LDEADR+LD G+ RDI +
Sbjct: 119 KINPQIARLRQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKK 177
Query: 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI--DAADSTDIHNTTDSLVIPD 623
+ L K + Q++L SAT +P ++ LA + NP++I DA +ST T L D
Sbjct: 178 LMTALPKDR---QNLLFSATFSPEIRALAKGMVNNPLEISVDAENST-AEKVTQWLTAVD 233
Query: 624 SLKQHFIVT 632
++ ++T
Sbjct: 234 KKRKPAVLT 242
Score = 311 (114.5 bits), Expect = 9.6e-42, Sum P(2) = 9.6e-42
Identities = 67/174 (38%), Positives = 109/174 (62%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68
+Q +I ++ G DV+ +QTG+GKT + +P++Q+L + + + A+I+ PTRE
Sbjct: 32 IQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSSNNVRALILTPTRE 91
Query: 69 LALQ---TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
LA Q ++E++ K + +V GG K+ + AR+R+G+ +LVATPGRLLD +
Sbjct: 92 LAAQISESIEVYGKYLNLHSMVV----FGGVKINPQIARLRQGVDVLVATPGRLLD-LYN 146
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
+KFS++E +LDEADR+LD G+ RDI + + L K + Q++L SAT +P
Sbjct: 147 QRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDR---QNLLFSATFSP 197
Score = 201 (75.8 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 42/121 (34%), Positives = 69/121 (57%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+ E+ ++LVF T+ A+ T+ L E + +HG+ SQ RT+ F+
Sbjct: 245 IKENNWQQVLVFTKTKHGANKLTKHLEA---EGLTAAAIHGNKSQGARTKALAAFKDGSV 301
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
+L+ TD+AARG+D+ L+ +V + P+ DYVHR+GRTAR G+ G +L + E+ L
Sbjct: 302 KILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDL 361
Query: 772 V 772
+
Sbjct: 362 L 362
Score = 153 (58.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 37/97 (38%), Positives = 59/97 (60%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
+KFS++E +LDEADR+LD G+ RDI + + L K + Q++L SAT +P ++ LA
Sbjct: 150 VKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDR---QNLLFSATFSPEIRALAKGM 206
Query: 250 LQNPIQI--DAADSTDIHNTTDSLVIPDSLKQHFIVT 284
+ NP++I DA +ST T L D ++ ++T
Sbjct: 207 VNNPLEISVDAENST-AEKVTQWLTAVDKKRKPAVLT 242
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 364 (133.2 bits), Expect = 6.1e-32, Sum P(2) = 6.1e-32
Identities = 97/277 (35%), Positives = 156/277 (56%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T +++ P I K L E ++T +Q+ S+ L G D+L ++TGSGKTL++ +P
Sbjct: 141 TDFKDLP-ISQLTLKALTES-KFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILP 198
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
I++ L R + R DGI A+++ PTRELA+Q ++ + K T+ + GG ++
Sbjct: 199 ILETL--WRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSA-GLIIGGRNVQQ 255
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
EK +I ++IL+ATPGRLL H T S ++ LVLDEADRILD G+ + + +E
Sbjct: 256 EKDKIN-AMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVEN 314
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAAD-STDIHNTTDSL-VIPDSL 625
L +++ Q++L SAT T +++ LA ++LQ P I + D +T N T +L VIP +
Sbjct: 315 LPRER---QTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEM 371
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEES-KML 661
K + + + K L + C+ V E+ K+L
Sbjct: 372 KLNMLFSFIKTHLTSKIIVFFASCKQVRFAHETFKLL 408
Score = 303 (111.7 bits), Expect = 2.3e-49, Sum P(2) = 2.3e-49
Identities = 83/234 (35%), Positives = 122/234 (52%)
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
Q++L SAT T +++ LA ++LQ P I + DI T P +L Q V P +++
Sbjct: 320 QTLLFSATQTKSIRDLARLSLQEPEYISVYEK-DITTT------PQNLTQTLCVIPLEMK 372
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
L L SFI K SK++VF A+ + E +L F LHG M Q
Sbjct: 373 LNMLFSFI--KTHLT-----SKIIVFFASCKQVRFAHETFK-LLNPGTTLFPLHGKMKQW 424
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757
R EVF+ F K+G L TD+AARGLD P V+W++Q P Y+HRVGRTAR
Sbjct: 425 TRLEVFEDFCKKKAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAP 484
Query: 758 GSSLLFLIPSEVK-LVEELQNRRIRIEEIKLKDCLQNLLSV--KMEGDLSRLAD 808
G S+ L+PSE +V ++ ++++ E ++ + L+S+ K+ LS D
Sbjct: 485 GQSITILLPSEKDGMVNLMEKQKMKFEILEPNP--EKLVSIDSKLSSFLSEKTD 536
Score = 301 (111.0 bits), Expect = 2.3e-49, Sum P(2) = 2.3e-49
Identities = 73/200 (36%), Positives = 119/200 (59%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
++T +Q+ S+ L G D+L ++TGSGKTL++ +PI++ L R + R DGI A+++
Sbjct: 163 KLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILETL--WRNRWGRDDGIGAIVLS 220
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA+Q ++ + K T+ + GG ++ EK +I ++IL+ATPGRLL H
Sbjct: 221 PTRELAIQIFDVLKAVGKYHTFSA-GLIIGGRNVQQEKDKIN-AMNILIATPGRLLQHMD 278
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWC 184
T S ++ LVLDEADRILD G+ + + +E L +++ Q++L SAT T +
Sbjct: 279 ETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRER---QTLLFSATQTKSI--- 332
Query: 185 KHTETLKFSKVEHLVLDEAD 204
+ L + E++ + E D
Sbjct: 333 RDLARLSLQEPEYISVYEKD 352
Score = 150 (57.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 52/159 (32%), Positives = 83/159 (52%)
Query: 162 KKQKPQFQSILLSATLTPATCWCKHTETLKF--SKVEHLVLDEADRILDQGYERDIAEFL 219
+K K +IL++ TP ET F S ++ LVLDEADRILD G+ + + +
Sbjct: 256 EKDKINAMNILIA---TPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIV 312
Query: 220 EILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNP--IQIDAAD-STDIHNTTDSL-VIPD 275
E L +++ Q++L SAT T +++ LA ++LQ P I + D +T N T +L VIP
Sbjct: 313 ENLPRER---QTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPL 369
Query: 276 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEES-KML 313
+K + + + K L + C+ V E+ K+L
Sbjct: 370 EMKLNMLFSFIKTHLTSKIIVFFASCKQVRFAHETFKLL 408
Score = 71 (30.1 bits), Expect = 6.1e-32, Sum P(2) = 6.1e-32
Identities = 29/136 (21%), Positives = 60/136 (44%)
Query: 788 KDCLQNLLSV-KMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRF 846
KD + NL+ KM+ ++ + N E + + S + ++ L A K + S++R
Sbjct: 496 KDGMVNLMEKQKMKFEI---LEPNPEKLVS-IDSKLSSFLSEKTDLKYLAQKSFVSYLR- 550
Query: 847 YASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSVISGIGXXXXXXXXXXXXMAINKEKSF 906
+ Y + + IF +++++ F+KS L P++ G + N +K
Sbjct: 551 -SVYRQSNKEIFKIQELNINEFSKSLGLLGTPNIQFG---KASADSKNKSFVVSNIQKQL 606
Query: 907 KQRGNFSKKQMLSEFD 922
K + + +K + S D
Sbjct: 607 KDKKSKGEKDIDSSDD 622
Score = 38 (18.4 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 340 EYNIDPDNYEIPKKTEVKSGPIS 362
EYN D D+ + ++E + PI+
Sbjct: 835 EYNSDDDDDDEESESEEQPKPIT 857
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 357 (130.7 bits), Expect = 6.6e-49, Sum P(2) = 6.6e-49
Identities = 84/233 (36%), Positives = 133/233 (57%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-- 454
G+ + L+E + I T +QQ +I +L G DVL +QTG+GKT A+ +P+IQ+
Sbjct: 12 GLDSRLLNTLSE-LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIE 70
Query: 455 QEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI 514
Q + + + K+ I A++++PTRELA Q L+ K + + + GG MK + +
Sbjct: 71 QPWQREANSKE-IRALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMKVQLNHL 128
Query: 515 RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574
R G+ IL+ATPGRLLDH H ++L KVE LVLDEADR+LD G+ D+ +L++
Sbjct: 129 RGGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR---VLRRLS 184
Query: 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
P Q++ SAT ++ +A +++PI++ S T +V P K+
Sbjct: 185 PLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR 237
Score = 315 (115.9 bits), Expect = 6.6e-47, Sum P(3) = 6.6e-47
Identities = 73/178 (41%), Positives = 109/178 (61%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGI 58
+ I T +QQ +I +L G DVL +QTG+GKT A+ +P+IQ+ Q + + + K+ I
Sbjct: 24 LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKE-I 82
Query: 59 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
A++++PTRELA Q L+ K + + + GG MK + +R G+ IL+ATPGR
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMKVQLNHLRGGVDILIATPGR 141
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
LLDH H ++L KVE LVLDEADR+LD G+ D+ +L++ P Q++ SAT
Sbjct: 142 LLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR---VLRRLSPLRQTLFFSAT 195
Score = 191 (72.3 bits), Expect = 6.6e-49, Sum P(2) = 6.6e-49
Identities = 54/163 (33%), Positives = 82/163 (50%)
Query: 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
Q + K R L S+++G +N + +LVF T+ +D E L + I
Sbjct: 227 QQMVYPVDKKRKRELLSYLIGS-KNWQQ-----VLVFTKTRQGSDALAEELKL---DGIK 277
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
++G SQ R + F++ K LI TDVAARGLD+ ++ +V Y P + DYVH
Sbjct: 278 AVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVH 337
Query: 747 RVGRTARVGHEGSSLLFLIPSE---VKLVEELQNRRIRIEEIK 786
R+GRT R G G ++ L E ++ +E L N R+ E +K
Sbjct: 338 RIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLK 380
Score = 139 (54.0 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 186 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRL 245
H ++L KVE LVLDEADR+LD G+ D+ +L++ P Q++ SAT ++ +
Sbjct: 147 HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR---VLRRLSPLRQTLFFSATFDSKIKAV 203
Query: 246 AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 279
A +++PI++ S T +V P K+
Sbjct: 204 AYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR 237
Score = 46 (21.3 bits), Expect = 6.6e-47, Sum P(3) = 6.6e-47
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 369 PDIPNVPTRRLKPVSEALFAPTSYE-EFPGI-HPFMKKNLNEGMNITQVT--TVQQLSIQ 424
PD+ V RRL P+ + LF +++ + + + M+ + + + T TVQQ+ +
Sbjct: 174 PDLQRV-LRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQM-VY 231
Query: 425 PI 426
P+
Sbjct: 232 PV 233
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 357 (130.7 bits), Expect = 6.6e-49, Sum P(2) = 6.6e-49
Identities = 84/233 (36%), Positives = 133/233 (57%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-- 454
G+ + L+E + I T +QQ +I +L G DVL +QTG+GKT A+ +P+IQ+
Sbjct: 12 GLDSRLLNTLSE-LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIE 70
Query: 455 QEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARI 514
Q + + + K+ I A++++PTRELA Q L+ K + + + GG MK + +
Sbjct: 71 QPWQREANSKE-IRALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMKVQLNHL 128
Query: 515 RKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574
R G+ IL+ATPGRLLDH H ++L KVE LVLDEADR+LD G+ D+ +L++
Sbjct: 129 RGGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR---VLRRLS 184
Query: 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
P Q++ SAT ++ +A +++PI++ S T +V P K+
Sbjct: 185 PLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR 237
Score = 315 (115.9 bits), Expect = 6.6e-47, Sum P(3) = 6.6e-47
Identities = 73/178 (41%), Positives = 109/178 (61%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGI 58
+ I T +QQ +I +L G DVL +QTG+GKT A+ +P+IQ+ Q + + + K+ I
Sbjct: 24 LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKE-I 82
Query: 59 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
A++++PTRELA Q L+ K + + + GG MK + +R G+ IL+ATPGR
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMKVQLNHLRGGVDILIATPGR 141
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
LLDH H ++L KVE LVLDEADR+LD G+ D+ +L++ P Q++ SAT
Sbjct: 142 LLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR---VLRRLSPLRQTLFFSAT 195
Score = 191 (72.3 bits), Expect = 6.6e-49, Sum P(2) = 6.6e-49
Identities = 54/163 (33%), Positives = 82/163 (50%)
Query: 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
Q + K R L S+++G +N + +LVF T+ +D E L + I
Sbjct: 227 QQMVYPVDKKRKRELLSYLIGS-KNWQQ-----VLVFTKTRQGSDALAEELKL---DGIK 277
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
++G SQ R + F++ K LI TDVAARGLD+ ++ +V Y P + DYVH
Sbjct: 278 AVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVH 337
Query: 747 RVGRTARVGHEGSSLLFLIPSE---VKLVEELQNRRIRIEEIK 786
R+GRT R G G ++ L E ++ +E L N R+ E +K
Sbjct: 338 RIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLK 380
Score = 139 (54.0 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 186 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRL 245
H ++L KVE LVLDEADR+LD G+ D+ +L++ P Q++ SAT ++ +
Sbjct: 147 HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQR---VLRRLSPLRQTLFFSATFDSKIKAV 203
Query: 246 AGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 279
A +++PI++ S T +V P K+
Sbjct: 204 AYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR 237
Score = 46 (21.3 bits), Expect = 6.6e-47, Sum P(3) = 6.6e-47
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 369 PDIPNVPTRRLKPVSEALFAPTSYE-EFPGI-HPFMKKNLNEGMNITQVT--TVQQLSIQ 424
PD+ V RRL P+ + LF +++ + + + M+ + + + T TVQQ+ +
Sbjct: 174 PDLQRV-LRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQM-VY 231
Query: 425 PI 426
P+
Sbjct: 232 PV 233
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 345 (126.5 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 92/249 (36%), Positives = 145/249 (58%)
Query: 400 PFMKKNLNEGMNITQ---VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
P KK L +G+ Q VT +Q+ +I L G DVL ++TGSGKTLA+ +P+++ L
Sbjct: 75 PLSKKTL-KGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 133
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
++ + DG+ +II PTRELA QT E+ K+ K+ + + GG+ +K E RI
Sbjct: 134 LQ--WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSA-GLIIGGKDLKHEAERINN 190
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
I+ILV TPGRLL H T + ++ LVLDEADRILD G+ + +E L K++
Sbjct: 191 -INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKR-- 247
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636
Q++L SAT T +V+ LA ++L++P + + ++T P +L+Q++I+
Sbjct: 248 -QTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAK-YST------PATLEQNYIICELHQ 299
Query: 637 RLVALASFI 645
++ L SF+
Sbjct: 300 KISVLFSFL 308
Score = 302 (111.4 bits), Expect = 9.9e-49, Sum P(2) = 9.9e-49
Identities = 73/173 (42%), Positives = 106/173 (61%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
VT +Q+ +I L G DVL ++TGSGKTLA+ +P+++ L ++ + DG+ +II P
Sbjct: 92 VTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ--WTSTDGLGVLIISP 149
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA QT E+ K+ K+ + + GG+ +K E RI I+ILV TPGRLL H
Sbjct: 150 TRELAYQTFEVLRKVGKNHDFSA-GLIIGGKDLKHEAERINN-INILVCTPGRLLQHMDE 207
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
T + ++ LVLDEADRILD G+ + +E L K++ Q++L SAT T
Sbjct: 208 TICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKR---QTLLFSATQT 257
Score = 296 (109.3 bits), Expect = 9.9e-49, Sum P(2) = 9.9e-49
Identities = 79/265 (29%), Positives = 142/265 (53%)
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
I++ + Q++L SAT T +V+ LA ++L++P + + ++T P +L+Q+
Sbjct: 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAK-YST------PATLEQN 291
Query: 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688
+I+ ++ L SF+ + K +VF ++ Y + L I+
Sbjct: 292 YIICELHQKISVLFSFLRSHLKK-------KSIVFFSSCKEVQYLYRVFCR-LRPGISIL 343
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748
LHG Q R EV+ F ++ VL TD+AARGLD P V+W++Q+ P + Y+HR
Sbjct: 344 ALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRA 403
Query: 749 GRTARVGHEGSSLLFLIPSEVK-LVEELQNRRIRIEEIKLKDCLQNLLSV--KMEGDLSR 805
GRTAR +G +LL L+PSE + +V++L +++ ++EIK+ + L+ V K+E L++
Sbjct: 404 GRTARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINP--EKLIDVQKKLESFLAQ 461
Query: 806 LADGNVETAATALQMSFESAVLQQK 830
D +++ A +S+ +V K
Sbjct: 462 --DQDLKERAQRCFVSYIRSVYLMK 484
Score = 127 (49.8 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 42/139 (30%), Positives = 75/139 (53%)
Query: 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKF--SKVEHLVLDEADRILDQGYERDIAEF 218
LK + + +I + TP ET+ F + ++ LVLDEADRILD G+ +
Sbjct: 181 LKHEAERINNINI-LVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAI 239
Query: 219 LEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 278
+E L K++ Q++L SAT T +V+ LA ++L++P + + ++T P +L+
Sbjct: 240 IENLPKKR---QTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAK-YST------PATLE 289
Query: 279 QHFIVTPPKLRLVALASFI 297
Q++I+ ++ L SF+
Sbjct: 290 QNYIICELHQKISVLFSFL 308
Score = 59 (25.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q ES + Q + L A + + S++R KD + +FN ++ + +A S L A
Sbjct: 451 VQKKLESFLAQDQDLKERAQRCFVSYIRS-VYLMKD-KEVFNVSKLPITEYALSLGLAVA 508
Query: 878 PSV 880
P +
Sbjct: 509 PRI 511
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 345 (126.5 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 92/249 (36%), Positives = 145/249 (58%)
Query: 400 PFMKKNLNEGMNITQ---VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
P KK L +G+ Q VT +Q+ +I L G DVL ++TGSGKTLA+ +P+++ L
Sbjct: 75 PLSKKTL-KGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 133
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
++ + DG+ +II PTRELA QT E+ K+ K+ + + GG+ +K E RI
Sbjct: 134 LQ--WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSA-GLIIGGKDLKHEAERINN 190
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
I+ILV TPGRLL H T + ++ LVLDEADRILD G+ + +E L K++
Sbjct: 191 -INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKR-- 247
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636
Q++L SAT T +V+ LA ++L++P + + ++T P +L+Q++I+
Sbjct: 248 -QTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAK-YST------PATLEQNYIICELHQ 299
Query: 637 RLVALASFI 645
++ L SF+
Sbjct: 300 KISVLFSFL 308
Score = 302 (111.4 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 73/173 (42%), Positives = 106/173 (61%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
VT +Q+ +I L G DVL ++TGSGKTLA+ +P+++ L ++ + DG+ +II P
Sbjct: 92 VTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ--WTSTDGLGVLIISP 149
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA QT E+ K+ K+ + + GG+ +K E RI I+ILV TPGRLL H
Sbjct: 150 TRELAYQTFEVLRKVGKNHDFSA-GLIIGGKDLKHEAERINN-INILVCTPGRLLQHMDE 207
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
T + ++ LVLDEADRILD G+ + +E L K++ Q++L SAT T
Sbjct: 208 TICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKR---QTLLFSATQT 257
Score = 291 (107.5 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 76/263 (28%), Positives = 137/263 (52%)
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
I++ + Q++L SAT T +V+ LA ++L++P + + ++T P +L+Q+
Sbjct: 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAK-YST------PATLEQN 291
Query: 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688
+I+ ++ L SF+ K +VF ++ Y + L I+
Sbjct: 292 YIICELHQKISVLFSFLRSHLTK-------KSIVFFSSCKEVQYLYRVFCR-LRPGISIL 343
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748
LHG Q R EV+ F ++ VL TD+AARGLD P V+W++Q+ P + Y+HR
Sbjct: 344 ALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRA 403
Query: 749 GRTARVGHEGSSLLFLIPSEVK-LVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLA 807
GRTAR +G +LL L+PSE + +V++L +++ ++EIK+ + L+ V+ +
Sbjct: 404 GRTARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINP--EKLIDVQKRLESFLAQ 461
Query: 808 DGNVETAATALQMSFESAVLQQK 830
D +++ A +S+ +V K
Sbjct: 462 DQDLKERAQRCFVSYIRSVYLMK 484
Score = 127 (49.8 bits), Expect = 0.00040, P = 0.00040
Identities = 42/139 (30%), Positives = 75/139 (53%)
Query: 161 LKKQKPQFQSILLSATLTPATCWCKHTETLKF--SKVEHLVLDEADRILDQGYERDIAEF 218
LK + + +I + TP ET+ F + ++ LVLDEADRILD G+ +
Sbjct: 181 LKHEAERINNINI-LVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAI 239
Query: 219 LEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 278
+E L K++ Q++L SAT T +V+ LA ++L++P + + ++T P +L+
Sbjct: 240 IENLPKKR---QTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAK-YST------PATLE 289
Query: 279 QHFIVTPPKLRLVALASFI 297
Q++I+ ++ L SF+
Sbjct: 290 QNYIICELHQKISVLFSFL 308
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 488 (176.8 bits), Expect = 4.1e-48, Sum P(2) = 4.1e-48
Identities = 141/472 (29%), Positives = 243/472 (51%)
Query: 343 IDPDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFM 402
+ +N + + E KS L + + T+ K S++ + T +++FP + P
Sbjct: 34 VKDNNKSLKRGREGKSDVDEPLIKKPASTTPLVTQIAK-TSDSYLSKTRFDQFP-LSPLT 91
Query: 403 KKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP--K 460
K + E +T VQ+ ++ IL G D+L +++TG+GKT+A+ +P I+ + + P +
Sbjct: 92 LKGI-EDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASR 150
Query: 461 ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-IS 519
+R I +++ PTRELA Q L K I + GG K+ +E+ R++K
Sbjct: 151 DNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQ 210
Query: 520 ILVATPGRLLDHCKHTE--TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 577
ILVATPGRL DH +T + V+ LVLDEAD +LD G+ R+I + + KQ+
Sbjct: 211 ILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQR--- 267
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQ-IDAAD--STDIHNTTDSLVIPDSLKQHFIVTPP 634
Q+ L SAT++ V+++ + L+ + ++ + + H + + SL +HF
Sbjct: 268 QTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHF----- 322
Query: 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-NIAFFKLHGS 693
+L +L K ++ ++ K+++F T + T L++ +LG+ ++ ++H
Sbjct: 323 -----SLLYGLLKK--HITDNVGYKVIIFCTTAMV----TRLVADLLGKLSLNVREIHSR 371
Query: 694 MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR 753
QS RT V FR KS +L+ +DV+ARG+D P V +VQ PS Y+HR+GRT R
Sbjct: 372 KPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGR 431
Query: 754 VGHEGSSLLFLIPSEVKLVEELQNRRIR------IEEIKLKDCLQNLLSVKM 799
G EG +L L P E + +++ I I+ +K + L+ V+M
Sbjct: 432 KGKEGEGVLLLAPWEEYFLSSVKDLPITKSSLPPIDHEAVKKVQKGLIQVEM 483
Score = 276 (102.2 bits), Expect = 9.9e-21, Sum P(2) = 9.9e-21
Identities = 67/178 (37%), Positives = 105/178 (58%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP--KISRKDGIYAVII 63
+T VQ+ ++ IL G D+L +++TG+GKT+A+ +P I+ + + P + +R I +++
Sbjct: 103 MTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVV 162
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDH 122
PTRELA Q L K I + GG K+ +E+ R++K ILVATPGRL DH
Sbjct: 163 CPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDH 222
Query: 123 CKHTE--TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+T + V+ LVLDEAD +LD G+ R+I + + KQ+ Q+ L SAT++
Sbjct: 223 IDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQR---QTFLFSATVS 277
Score = 48 (22.0 bits), Expect = 4.1e-48, Sum P(2) = 4.1e-48
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 823 ESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+ ++Q ++ + A Y +W+ +Y S K R ++ F++S L P++
Sbjct: 475 QKGLIQVEMTNKEAA--YQAWLGYYKSQKKIARDTTRLVEL-ANEFSRSMGLSIPPAI 529
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 338 (124.0 bits), Expect = 5.2e-27, P = 5.2e-27
Identities = 85/257 (33%), Positives = 147/257 (57%)
Query: 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI 448
P ++ E P P K + + + +T +Q +I L G D+L ++TGSGKTLA+ +
Sbjct: 48 PKAFAELPLSEP-TAKGVRDS-HFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLV 105
Query: 449 PIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508
P+++KL R + +++ + A+++ PTRELA+QT ++ K+ + + + GG+ ++
Sbjct: 106 PLLEKLY--REQWTQEAKLGALVLSPTRELAVQTFQVLRKIGRHHLFSA-GLVIGGKSVR 162
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
E + + ++IL+ TPGR+L H T ++ LVLDEADRI+D G++RD+ ++
Sbjct: 163 EEAEALSR-MNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQ 221
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
L + Q++L SAT + V LA ++L++P + S TT + P +L+QH
Sbjct: 222 HLPTTR---QTLLFSATQSKKVSDLARLSLKDPEYV----SVHAEATTAT---PSTLQQH 271
Query: 629 FIVTPPKLRLVALASFI 645
+IVTP +L L FI
Sbjct: 272 YIVTPLPEKLDTLWGFI 288
Score = 317 (116.6 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 95/304 (31%), Positives = 153/304 (50%)
Query: 578 QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
Q++L SAT + V LA ++L++P + S TT + P +L+QH+IVTP +
Sbjct: 228 QTLLFSATQSKKVSDLARLSLKDPEYV----SVHAEATTAT---PSTLQQHYIVTPLPEK 280
Query: 638 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQS 697
L L FI N+ +SKM+VF+++ + E + I +HG Q
Sbjct: 281 LDTLWGFIKA---NL----KSKMVVFLSSGKQVRFVYESFRQ-MQPGIPLLHMHGRQKQL 332
Query: 698 ERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHE 757
R +V K F S K L TDV ARG+D VDW+VQ AP + DY+HRVGRTAR E
Sbjct: 333 ARLDVTKRFDSSKHACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYERE 392
Query: 758 GSSLLFLIPSE-VKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAAT 816
G +++FL PSE +++ L+ +++ I ++ KD + + +++ + D V+ A
Sbjct: 393 GKAVIFLDPSEEAGMLKRLERKKVPITKVTAKDSKKKSIRDELQSICWKSHD--VKYLAQ 450
Query: 817 ALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRD 876
+S+ AV H + + ++++ +F F ++ L FAKS L
Sbjct: 451 KAFISYARAV------HRATERD--------EKHNENSDQVFKFDKLDLEGFAKSMGLAG 496
Query: 877 APSV 880
AP +
Sbjct: 497 APQI 500
Score = 272 (100.8 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 60/171 (35%), Positives = 106/171 (61%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T +Q +I L G D+L ++TGSGKTLA+ +P+++KL R + +++ + A+++ P
Sbjct: 72 LTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEKLY--REQWTQEAKLGALVLSP 129
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA+QT ++ K+ + + + GG+ ++ E + + ++IL+ TPGR+L H
Sbjct: 130 TRELAVQTFQVLRKIGRHHLFSA-GLVIGGKSVREEAEALSR-MNILIGTPGRILQHLDQ 187
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
T ++ LVLDEADRI+D G++RD+ ++ L + Q++L SAT
Sbjct: 188 THGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTR---QTLLFSAT 235
Score = 142 (55.0 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 40/111 (36%), Positives = 62/111 (55%)
Query: 187 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA 246
T ++ LVLDEADRI+D G++RD+ ++ L + Q++L SAT + V LA
Sbjct: 188 THGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTTR---QTLLFSATQSKKVSDLA 244
Query: 247 GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 297
++L++P + S TT + P +L+QH+IVTP +L L FI
Sbjct: 245 RLSLKDPEYV----SVHAEATTAT---PSTLQQHYIVTPLPEKLDTLWGFI 288
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 508 (183.9 bits), Expect = 7.2e-48, P = 7.2e-48
Identities = 130/395 (32%), Positives = 212/395 (53%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
M I++ T VQ+ I ILDG D + ++TGSGKT A+ +P++QKL E P G++
Sbjct: 20 MGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQKLSE-DPY-----GVFC 73
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
+++ PTRELA Q E F L K + + GG M ++ + K ++VATPGRL
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLA 132
Query: 530 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATLTP 588
DH + ++T+ ++++ L++DEADR+L+QG D + LE++ P + Q++L SATLT
Sbjct: 133 DHIRSSDTINLNRIQFLIMDEADRLLEQGCT-DFTKDLEVILSAVPAKRQTLLFSATLTD 191
Query: 589 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 648
+Q+L + + P + +D+ + L Q FI+TP K++ L I
Sbjct: 192 TLQQLQSIAMNRPFFWE--HKSDVQTV-------EELDQRFILTPEKVKDAYLVHLI--- 239
Query: 649 CQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-NIAFFKLHGSMSQSERTEVFKTFR 707
+DE + + T ++L+ +L E N LH M Q +R F+
Sbjct: 240 --QTFQDEHDDWSIIIFTNTCKS--CQILTMMLREFNFPTISLHSMMKQRQRFANLAKFK 295
Query: 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767
S +LI TDVAARGLD+P V ++ + P Y+HRVGRTAR G G S+ +
Sbjct: 296 SNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQY 355
Query: 768 EVKLVEELQNR-RIRIEE--IKLKDCLQNLLSVKM 799
++ L+ ++ + + +++E I+ K+ L+ L V +
Sbjct: 356 DIHLINAIEEQNQTKLKEFPIEEKEVLKILTQVNV 390
Score = 303 (111.7 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 70/179 (39%), Positives = 110/179 (61%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M I++ T VQ+ I ILDG D + ++TGSGKT A+ +P++QKL E P G++
Sbjct: 20 MGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQKLSE-DPY-----GVFC 73
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA Q E F L K + + GG M ++ + K ++VATPGRL
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVTQGLELSKKPHVVVATPGRLA 132
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATLT 178
DH + ++T+ ++++ L++DEADR+L+QG D + LE++ P + Q++L SATLT
Sbjct: 133 DHIRSSDTINLNRIQFLIMDEADRLLEQGCT-DFTKDLEVILSAVPAKRQTLLFSATLT 190
Score = 139 (54.0 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 53/191 (27%), Positives = 94/191 (49%)
Query: 108 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 167
G+ LV TP R L + + + +V L D I+ G + + + LE+ KK P
Sbjct: 70 GVFCLVLTPTRELAY----QIAEQFRVLGKPLGLKDCIIVGGMDM-VTQGLELSKK--PH 122
Query: 168 FQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 227
++ AT + ++T+ ++++ L++DEADR+L+QG D + LE++ P
Sbjct: 123 ----VVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCT-DFTKDLEVILSAVP 177
Query: 228 -QFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP 286
+ Q++L SATLT +Q+L + + P + +D+ + L Q FI+TP
Sbjct: 178 AKRQTLLFSATLTDTLQQLQSIAMNRPFFWE--HKSDVQTV-------EELDQRFILTPE 228
Query: 287 KLRLVALASFI 297
K++ L I
Sbjct: 229 KVKDAYLVHLI 239
Score = 37 (18.1 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 529 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK 574
L+ E K +K + ++LD D L++ + ++ + KK K
Sbjct: 399 LESTDFDEKKKINKRKQMILDGKDPDLEEKRKNELEKIRGKNKKLK 444
Score = 37 (18.1 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 164 QKPQFQSILLSATLTPATCWCK-----HTETLKFSKVEHLVLDEADRILDQGYERDIAEF 218
++ + IL +T C K E K +K + ++LD D L++ + ++ +
Sbjct: 377 EEKEVLKILTQVNVTRRQCEIKLESTDFDEKKKINKRKQMILDGKDPDLEEKRKNELEKI 436
Query: 219 LEILKKQK 226
KK K
Sbjct: 437 RGKNKKLK 444
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 320 (117.7 bits), Expect = 3.9e-25, P = 3.9e-25
Identities = 88/254 (34%), Positives = 138/254 (54%)
Query: 392 YEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPII 451
+E+FP + + L + + T+ T +Q+ +I L G DV+ ++TGSGKTLA IP++
Sbjct: 78 FEDFP-LSWRTLEGLKDN-DYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135
Query: 452 QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
+ L R K S G+ A+II PTRELALQT + + + GG + E+
Sbjct: 136 EAL--WRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSC-GLVIGGSDVAFER 192
Query: 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571
RI GI+I+V TPGRLL H + ++ LVLDEADR+LD G+ + + + L
Sbjct: 193 NRI-SGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLP 251
Query: 572 KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 631
++ Q++L SAT T V+ L + +P+ + +H S PD+LKQ +++
Sbjct: 252 AER---QTLLFSATQTRNVKDLCRVCTNDPVFVS------VHENA-SAATPDNLKQSYVI 301
Query: 632 TPPKLRLVALASFI 645
+ ++ AL SFI
Sbjct: 302 VEEEHKINALWSFI 315
Score = 314 (115.6 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 80/237 (33%), Positives = 127/237 (53%)
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
I+ + Q++L SAT T V+ L + +P+ + +H S PD+LKQ
Sbjct: 246 IINNLPAERQTLLFSATQTRNVKDLCRVCTNDPVFVS------VHENA-SAATPDNLKQS 298
Query: 629 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFF 688
+++ + ++ AL SFI + K LVF+++ A + TE S L +
Sbjct: 299 YVIVEEEHKINALWSFI-------EAHRKKKSLVFVSSCKQARFLTEAFSQ-LRPGLPVM 350
Query: 689 KLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRV 748
L G+M+Q +R E F F K+ VLI TDVA+RGLD +DW++Q P+ DY+HRV
Sbjct: 351 GLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRV 410
Query: 749 GRTARVGHEGSSLLFLIPS-EVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLS 804
GR+AR+ G+SLL + PS E ++ +L+ I IEE+K+ + + VK+ L+
Sbjct: 411 GRSARMDDSGNSLLMVSPSQEEAMIGKLEKHSIPIEELKIHPDAMSDVRVKLRAILA 467
Score = 269 (99.8 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 69/175 (39%), Positives = 100/175 (57%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
T+ T +Q+ +I L G DV+ ++TGSGKTLA IP+++ L R K S G+ A+II
Sbjct: 97 TKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEAL--WRAKWSPDYGLGALII 154
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 123
PTRELALQT + + + GG + E+ RI GI+I+V TPGRLL H
Sbjct: 155 SPTRELALQTFSTINAVGAHHGFSC-GLVIGGSDVAFERNRI-SGINIIVCTPGRLLQHM 212
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ ++ LVLDEADR+LD G+ + + + L ++ Q++L SAT T
Sbjct: 213 DENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAER---QTLLFSATQT 264
Score = 127 (49.8 bits), Expect = 0.00032, P = 0.00032
Identities = 33/100 (33%), Positives = 55/100 (55%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID 257
LVLDEADR+LD G+ + + + L ++ Q++L SAT T V+ L + +P+ +
Sbjct: 226 LVLDEADRMLDMGFSKQLNSIINNLPAER---QTLLFSATQTRNVKDLCRVCTNDPVFVS 282
Query: 258 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 297
+H S PD+LKQ +++ + ++ AL SFI
Sbjct: 283 ------VHENA-SAATPDNLKQSYVIVEEEHKINALWSFI 315
Score = 86 (35.3 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 30/110 (27%), Positives = 52/110 (47%)
Query: 221 ILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 280
I+ + Q++L SAT T V+ L + +P+ + +H S PD+LKQ
Sbjct: 246 IINNLPAERQTLLFSATQTRNVKDLCRVCTNDPVFVS------VHENA-SAATPDNLKQS 298
Query: 281 FIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 330
+++ + ++ AL SFI + K LVF+++ A + TE S
Sbjct: 299 YVIVEEEHKINALWSFI-------EAHRKKKSLVFVSSCKQARFLTEAFS 341
>SGD|S000002602 [details] [associations]
symbol:MSS116 "DEAD-box protein involved splicing of
mitochondrial introns" species:4932 "Saccharomyces cerevisiae"
[GO:0000373 "Group II intron splicing" evidence=IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA;IMP] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0000372 "Group I intron
splicing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0034337 "RNA folding" evidence=IMP] [GO:0033592
"RNA strand annealing activity" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002602
GO:GO:0005524 GO:GO:0006417 GO:GO:0005759 GO:GO:0006397
EMBL:BK006938 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:Z48784 GO:GO:0000373 GO:GO:0000372
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00700000105515 GO:GO:0033592 OrthoDB:EOG437VPN
PIR:S02116 RefSeq:NP_010480.1 PDB:3I5X PDB:3I5Y PDB:3I61 PDB:3I62
PDB:3SQW PDB:3SQX PDB:4DB2 PDB:4DB4 PDBsum:3I5X PDBsum:3I5Y
PDBsum:3I61 PDBsum:3I62 PDBsum:3SQW PDBsum:3SQX PDBsum:4DB2
PDBsum:4DB4 ProteinModelPortal:P15424 SMR:P15424 DIP:DIP-5368N
IntAct:P15424 MINT:MINT-525340 STRING:P15424 PaxDb:P15424
PeptideAtlas:P15424 EnsemblFungi:YDR194C GeneID:851775
KEGG:sce:YDR194C CYGD:YDR194c HOGENOM:HOG000113654 OMA:PEAHENI
EvolutionaryTrace:P15424 NextBio:969573 Genevestigator:P15424
GermOnline:YDR194C GO:GO:0034337 Uniprot:P15424
Length = 664
Score = 504 (182.5 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 130/385 (33%), Positives = 205/385 (53%)
Query: 410 MNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
M +T VQQ +I+PIL + DV+ R++TG+GKT A+ IPI Q L + K + +
Sbjct: 124 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL--INTKFDSQYMV 181
Query: 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSW----LTGGEKMKSEKARIRK-GISILV 522
AVI+ PTR+LALQ +E K + + + L GG ++ ++ K +I++
Sbjct: 182 KAVIVAPTRDLALQ-IEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVI 240
Query: 523 ATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK----KQKPQFQ 578
ATPGRL+D + F V++ VLDEADR+L+ G+ D+ IL K +
Sbjct: 241 ATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIK 300
Query: 579 SILLSATLTPAVQRLAG--MTLQNPIQIDAADSTD--IHNTTDSLVIPDSLKQHFIVTPP 634
++L SATL VQ+LA M + + +D D + H D V+ + + F +
Sbjct: 301 TLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVV---ISEKFANS-- 355
Query: 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSM 694
+ A I K Q D K ++F T + +L +++ + HG +
Sbjct: 356 ---IFAAVEHI--KKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKI 410
Query: 695 SQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754
+Q++RT + K F+ +SG+L+CTDV ARG+D P V ++Q PS +Y+HR+GRTAR
Sbjct: 411 TQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 470
Query: 755 GHEGSSLLFLIPSEVKLVEELQNRR 779
G EGSS+LF+ E+ V EL++ +
Sbjct: 471 GKEGSSVLFICKDELPFVRELEDAK 495
Score = 255 (94.8 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 77/224 (34%), Positives = 118/224 (52%)
Query: 1 MNITQVTTVQQLSIQPIL--DGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 58
M +T VQQ +I+PIL + DV+ R++TG+GKT A+ IPI Q L + K + +
Sbjct: 124 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL--INTKFDSQYMV 181
Query: 59 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSW----LTGGEKMKSEKARIRK-GISILV 113
AVI+ PTR+LALQ +E K + + + L GG ++ ++ K +I++
Sbjct: 182 KAVIVAPTRDLALQ-IEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVI 240
Query: 114 ATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK----KQKPQFQ 169
ATPGRL+D + F V++ VLDEADR+L+ G+ D+ IL K +
Sbjct: 241 ATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIK 300
Query: 170 SILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYER 213
++L SATL K + +K E L LD D+ + +ER
Sbjct: 301 TLLFSATLDDKVQ--KLANNI-MNKKECLFLDTVDKNEPEAHER 341
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 483 (175.1 bits), Expect = 3.9e-47, Sum P(2) = 3.9e-47
Identities = 140/387 (36%), Positives = 205/387 (52%)
Query: 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM 457
+ P++ +L M + + T +Q+ I IL G D + S+TGSGKT+A+++PI+QK E
Sbjct: 102 VAPWLVGSLTT-MAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQKWAE- 159
Query: 458 RPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG 517
P GI+AVI+ PTRELALQ E K + + P +TGG M+S+ +
Sbjct: 160 DPF-----GIFAVILTPTRELALQIFEQI-KAISAPQSMKPVLITGGTDMRSQAIELAGR 213
Query: 518 ISILVATPGRLLDHCKH--TETLK-FSKVEHLVLDEADRILDQGYER---DIAEFLEILK 571
++VATPGRL DH T+T+ +V +VLDEADR+L G D+ L L
Sbjct: 214 PHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLP 273
Query: 572 KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 631
Q Q++L +ATLTP V+ L M Q P + T+I +T +P +L+ ++
Sbjct: 274 GPS-QRQTLLFTATLTPEVRALKSMP-QTPGK-PPIFVTEI-STEAKDTVPPTLRTTYVQ 329
Query: 632 TPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLH 691
P R A +L N+ + +VF T AD LL + LG + LH
Sbjct: 330 VPLTHR-EAFLHVLLSTESNITKSA----IVFTNTTKSADLLERLLRS-LGHRVT--SLH 381
Query: 692 GSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRT 751
+ QSER FR+ + VL+ TDVA+RGLD+P V +V + P + DYVHRVGRT
Sbjct: 382 SLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRT 441
Query: 752 ARVGHEGSSLLFLIPSEVKLVEELQNR 778
AR G G ++ + +V+LV ++ R
Sbjct: 442 ARAGRTGEAVTLVGQRDVQLVLAIEER 468
Score = 269 (99.8 bits), Expect = 6.0e-20, P = 6.0e-20
Identities = 75/185 (40%), Positives = 105/185 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + + T +Q+ I IL G D + S+TGSGKT+A+++PI+QK E P GI+A
Sbjct: 113 MAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQKWAE-DPF-----GIFA 166
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
VI+ PTRELALQ E K + + P +TGG M+S+ + ++VATPGRL
Sbjct: 167 VILTPTRELALQIFEQI-KAISAPQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGRLA 225
Query: 121 DHCKH--TETLK-FSKVEHLVLDEADRILDQGYER---DIAEFLEILKKQKPQFQSILLS 174
DH T+T+ +V +VLDEADR+L G D+ L L Q Q++L +
Sbjct: 226 DHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLPGPS-QRQTLLFT 284
Query: 175 ATLTP 179
ATLTP
Sbjct: 285 ATLTP 289
Score = 44 (20.5 bits), Expect = 3.9e-47, Sum P(2) = 3.9e-47
Identities = 19/67 (28%), Positives = 24/67 (35%)
Query: 27 SQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW 86
S T + L I +K SRKD V+I E+ L E K W
Sbjct: 46 SYTAAPAPLPSLSRIKKKSSSTNATSSRKDDENPVLIKDALEIGLNAEENSFKALNVAPW 105
Query: 87 IVPSWLT 93
+V S T
Sbjct: 106 LVGSLTT 112
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 301 (111.0 bits), Expect = 7.1e-47, Sum P(3) = 7.1e-47
Identities = 71/220 (32%), Positives = 129/220 (58%)
Query: 418 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477
+QQ ++ L G DV+ ++TGSGKT A+AIP++Q L + P+ + +++ PTRE
Sbjct: 70 IQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLD-HPQ-----AFFCLVLTPTRE 123
Query: 478 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 537
LA Q + F L S ++ + + GG M ++ + + I+VATPGRL+DH ++T+
Sbjct: 124 LAFQIGQQFEAL-GSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKG 182
Query: 538 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT 597
++ L++DEADRIL+ +E ++ + L+++ +++ ++ L SAT+T V +L +
Sbjct: 183 FNLKALKFLIMDEADRILNMDFEVELDKILKVIPRER---RTYLFSATMTKKVSKLERAS 239
Query: 598 LQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 637
L++P ++ + + T D+L KQH+I P K +
Sbjct: 240 LRDPARVSVSSR---YKTVDNL------KQHYIFVPNKYK 270
Score = 265 (98.3 bits), Expect = 7.1e-47, Sum P(3) = 7.1e-47
Identities = 67/191 (35%), Positives = 101/191 (52%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
D+LKQH+I P K + L ++L NE + +VF AT ++ LG
Sbjct: 256 DNLKQHYIFVPNKYKETYLV-YLL------NEHAGNSAIVFCATC-ATTMQIAVMLRQLG 307
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
LHG MSQ +R F+S +L+CTDVAARGLD+P VD ++ Y PS S
Sbjct: 308 MQAV--PLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSK 365
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIKLKDCLQNLLSVKMEG 801
DYVHRVGRTAR G G ++ + +V+ ++++ N +++E K C++N + V +E
Sbjct: 366 DYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYK---CVENEVMVLVER 422
Query: 802 DLSRLADGNVE 812
+ +E
Sbjct: 423 TQEATENARIE 433
Score = 259 (96.2 bits), Expect = 5.6e-42, Sum P(2) = 5.6e-42
Identities = 58/170 (34%), Positives = 105/170 (61%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68
+QQ ++ L G DV+ ++TGSGKT A+AIP++Q L + P+ + +++ PTRE
Sbjct: 70 IQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLD-HPQ-----AFFCLVLTPTRE 123
Query: 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 128
LA Q + F L S ++ + + GG M ++ + + I+VATPGRL+DH ++T+
Sbjct: 124 LAFQIGQQFEAL-GSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKG 182
Query: 129 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
++ L++DEADRIL+ +E ++ + L+++ +++ ++ L SAT+T
Sbjct: 183 FNLKALKFLIMDEADRILNMDFEVELDKILKVIPRER---RTYLFSATMT 229
Score = 126 (49.4 bits), Expect = 5.9e-28, Sum P(3) = 5.9e-28
Identities = 29/105 (27%), Positives = 61/105 (58%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ ++ L++DEADRIL+ +E ++ + L+++ +++ ++ L SAT+T V +
Sbjct: 178 ENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRER---RTYLFSATMTKKVSK 234
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 289
L +L++P ++ + + T D+L KQH+I P K +
Sbjct: 235 LERASLRDPARVSVSSR---YKTVDNL------KQHYIFVPNKYK 270
Score = 40 (19.1 bits), Expect = 7.1e-47, Sum P(3) = 7.1e-47
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 96 EKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 142
EK E + + + V+ P L D C+ +K SK++ L A
Sbjct: 34 EKDDEEDVKEKSFAELGVSQP--LCDACQRLGWMKPSKIQQAALPHA 78
Score = 40 (19.1 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 505 EKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551
EK E + + + V+ P L D C+ +K SK++ L A
Sbjct: 34 EKDDEEDVKEKSFAELGVSQP--LCDACQRLGWMKPSKIQQAALPHA 78
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 332 (121.9 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 80/228 (35%), Positives = 134/228 (58%)
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP 459
P +K +G N + +Q +I +L G DV+ +QTG+GKT + +PI++ L + P
Sbjct: 11 PILKAIEEKGYNTP--SPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAK-GP 67
Query: 460 KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS 519
K+ R + + A+I+ PTRELA Q ++ L + + + GG K+ + R+ KG
Sbjct: 68 KV-RANQVRALILTPTRELAAQ-IQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125
Query: 520 ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS 579
ILVATPGRL+D + +KF ++E LVLDEADR+LD G+ RDI + L++L +++ Q+
Sbjct: 126 ILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR---QN 181
Query: 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+L SAT + ++ LA + NP++I + + T + + P +K+
Sbjct: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKK 229
Score = 283 (104.7 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 85/243 (34%), Positives = 139/243 (57%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68
+Q +I +L G DV+ +QTG+GKT + +PI++ L + PK+ R + + A+I+ PTRE
Sbjct: 27 IQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAK-GPKV-RANQVRALILTPTRE 84
Query: 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 128
LA Q ++ L + + + GG K+ + R+ KG ILVATPGRL+D +
Sbjct: 85 LAAQ-IQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRLMD-LYNQNA 142
Query: 129 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTE 188
+KF ++E LVLDEADR+LD G+ RDI + L++L +++ Q++L SAT + T + +
Sbjct: 143 VKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR---QNLLFSATFS--TEIRELAK 197
Query: 189 TLKFSKVEHLV--LDEADRILDQG-YERDIAEFLEILKK--QKPQFQSVLLSATLTPAVQ 243
L + VE V + R ++Q Y D+ + ++L K ++ +Q VL+
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257
Query: 244 RLA 246
RLA
Sbjct: 258 RLA 260
Score = 193 (73.0 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 47/128 (36%), Positives = 72/128 (56%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGEN-IAFFKLHGSMSQSERTEVFKTFRSVK 710
V E ++LVFM T+ A+ L+T L E + +HG+ SQ RT F++ +
Sbjct: 238 VKEGNWQQVLVFMRTKHGANR----LATYLNEQGLTAAAIHGNKSQGARTRALADFKAGE 293
Query: 711 SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGS--SLLFLIPS- 767
+L+ TD+AARG+D+P + +V + P + DYVHR+GRT R G G SL+ I +
Sbjct: 294 VRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAP 353
Query: 768 EVKLVEEL 775
E+ +E L
Sbjct: 354 ELFAIERL 361
Score = 163 (62.4 bits), Expect = 6.7e-24, Sum P(2) = 6.7e-24
Identities = 39/121 (32%), Positives = 68/121 (56%)
Query: 163 KQKPQFQSILLSATL---TPATCWCKHTET-LKFSKVEHLVLDEADRILDQGYERDIAEF 218
K PQ Q + A + TP + + +KF ++E LVLDEADR+LD G+ RDI +
Sbjct: 112 KINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKI 171
Query: 219 LEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 278
L++L +++ Q++L SAT + ++ LA + NP++I + + T + + P +K
Sbjct: 172 LKLLPEKR---QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVK 228
Query: 279 Q 279
+
Sbjct: 229 K 229
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 332 (121.9 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 80/228 (35%), Positives = 134/228 (58%)
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP 459
P +K +G N + +Q +I +L G DV+ +QTG+GKT + +PI++ L + P
Sbjct: 11 PILKAIEEKGYNTP--SPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAK-GP 67
Query: 460 KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS 519
K+ R + + A+I+ PTRELA Q ++ L + + + GG K+ + R+ KG
Sbjct: 68 KV-RANQVRALILTPTRELAAQ-IQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125
Query: 520 ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS 579
ILVATPGRL+D + +KF ++E LVLDEADR+LD G+ RDI + L++L +++ Q+
Sbjct: 126 ILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR---QN 181
Query: 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+L SAT + ++ LA + NP++I + + T + + P +K+
Sbjct: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKK 229
Score = 283 (104.7 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 85/243 (34%), Positives = 139/243 (57%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68
+Q +I +L G DV+ +QTG+GKT + +PI++ L + PK+ R + + A+I+ PTRE
Sbjct: 27 IQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAK-GPKV-RANQVRALILTPTRE 84
Query: 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 128
LA Q ++ L + + + GG K+ + R+ KG ILVATPGRL+D +
Sbjct: 85 LAAQ-IQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRLMD-LYNQNA 142
Query: 129 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTE 188
+KF ++E LVLDEADR+LD G+ RDI + L++L +++ Q++L SAT + T + +
Sbjct: 143 VKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR---QNLLFSATFS--TEIRELAK 197
Query: 189 TLKFSKVEHLV--LDEADRILDQG-YERDIAEFLEILKK--QKPQFQSVLLSATLTPAVQ 243
L + VE V + R ++Q Y D+ + ++L K ++ +Q VL+
Sbjct: 198 GLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGAN 257
Query: 244 RLA 246
RLA
Sbjct: 258 RLA 260
Score = 193 (73.0 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 47/128 (36%), Positives = 72/128 (56%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGEN-IAFFKLHGSMSQSERTEVFKTFRSVK 710
V E ++LVFM T+ A+ L+T L E + +HG+ SQ RT F++ +
Sbjct: 238 VKEGNWQQVLVFMRTKHGANR----LATYLNEQGLTAAAIHGNKSQGARTRALADFKAGE 293
Query: 711 SGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGS--SLLFLIPS- 767
+L+ TD+AARG+D+P + +V + P + DYVHR+GRT R G G SL+ I +
Sbjct: 294 VRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAP 353
Query: 768 EVKLVEEL 775
E+ +E L
Sbjct: 354 ELFAIERL 361
Score = 163 (62.4 bits), Expect = 6.7e-24, Sum P(2) = 6.7e-24
Identities = 39/121 (32%), Positives = 68/121 (56%)
Query: 163 KQKPQFQSILLSATL---TPATCWCKHTET-LKFSKVEHLVLDEADRILDQGYERDIAEF 218
K PQ Q + A + TP + + +KF ++E LVLDEADR+LD G+ RDI +
Sbjct: 112 KINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKI 171
Query: 219 LEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 278
L++L +++ Q++L SAT + ++ LA + NP++I + + T + + P +K
Sbjct: 172 LKLLPEKR---QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVK 228
Query: 279 Q 279
+
Sbjct: 229 K 229
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 336 (123.3 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 77/215 (35%), Positives = 127/215 (59%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
TS++ P +K + E + T+ T +Q SI L G D++ +QTGSGKT AY IP
Sbjct: 130 TSFQTLQLSRPVLK-GIAE-LKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIP 187
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
II++L +P S K +I+ PTRELALQ E KL + GG ++
Sbjct: 188 IIERLL-YKPSTSTK----VIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQ 242
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
++ +++ I++ATPGRL+DH +++ + ++ LV+DEADR+L++G++ ++ E L +
Sbjct: 243 QEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
+ K K Q ++L SAT+ +Q L ++LQ P++I
Sbjct: 303 IPKHKRQ--TLLFSATMNTRIQDLIQLSLQKPVRI 335
Score = 298 (110.0 bits), Expect = 6.0e-42, Sum P(2) = 6.0e-42
Identities = 66/177 (37%), Positives = 107/177 (60%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ T+ T +Q SI L G D++ +QTGSGKT AY IPII++L +P S K
Sbjct: 148 LKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLL-YKPSTSTK----V 202
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELALQ E KL + GG ++ ++ +++ I++ATPGRL+
Sbjct: 203 IILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLI 262
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
DH +++ + ++ LV+DEADR+L++G++ ++ E L ++ K K Q ++L SAT+
Sbjct: 263 DHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQ--TLLFSATM 317
Score = 229 (85.7 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 43/107 (40%), Positives = 76/107 (71%)
Query: 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717
S+++VF+A ++ A + ++ +LG ++ +LHG+++Q +R + K F+S++ VLICT
Sbjct: 374 SRVVVFVARKETA-HRLRIVLGLLGLKVS--ELHGALTQEQRLQNVKNFKSLEVPVLICT 430
Query: 718 DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
D+AARGLD+P ++ ++ Y P + Y+HRVGRTAR G +G+S+ F+
Sbjct: 431 DLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Score = 130 (50.8 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 29/98 (29%), Positives = 58/98 (59%)
Query: 161 LKKQKPQFQSILLSATLTPATC--WCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 218
L++Q+ Q ++ TP +++ + ++ LV+DEADR+L++G++ ++ E
Sbjct: 240 LRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEI 299
Query: 219 LEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
L ++ K K Q ++L SAT+ +Q L ++LQ P++I
Sbjct: 300 LSLIPKHKRQ--TLLFSATMNTRIQDLIQLSLQKPVRI 335
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 336 (123.3 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 77/215 (35%), Positives = 127/215 (59%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
TS++ P +K + E + T+ T +Q SI L G D++ +QTGSGKT AY IP
Sbjct: 130 TSFQTLQLSRPVLK-GIAE-LKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIP 187
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
II++L +P S K +I+ PTRELALQ E KL + GG ++
Sbjct: 188 IIERLL-YKPSTSTK----VIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQ 242
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
++ +++ I++ATPGRL+DH +++ + ++ LV+DEADR+L++G++ ++ E L +
Sbjct: 243 QEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
+ K K Q ++L SAT+ +Q L ++LQ P++I
Sbjct: 303 IPKHKRQ--TLLFSATMNTRIQDLIQLSLQKPVRI 335
Score = 298 (110.0 bits), Expect = 6.0e-42, Sum P(2) = 6.0e-42
Identities = 66/177 (37%), Positives = 107/177 (60%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ T+ T +Q SI L G D++ +QTGSGKT AY IPII++L +P S K
Sbjct: 148 LKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLL-YKPSTSTK----V 202
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELALQ E KL + GG ++ ++ +++ I++ATPGRL+
Sbjct: 203 IILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLI 262
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
DH +++ + ++ LV+DEADR+L++G++ ++ E L ++ K K Q ++L SAT+
Sbjct: 263 DHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQ--TLLFSATM 317
Score = 229 (85.7 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 43/107 (40%), Positives = 76/107 (71%)
Query: 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717
S+++VF+A ++ A + ++ +LG ++ +LHG+++Q +R + K F+S++ VLICT
Sbjct: 374 SRVVVFVARKETA-HRLRIVLGLLGLKVS--ELHGALTQEQRLQNVKNFKSLEVPVLICT 430
Query: 718 DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
D+AARGLD+P ++ ++ Y P + Y+HRVGRTAR G +G+S+ F+
Sbjct: 431 DLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Score = 130 (50.8 bits), Expect = 7.0e-24, Sum P(2) = 7.0e-24
Identities = 29/98 (29%), Positives = 58/98 (59%)
Query: 161 LKKQKPQFQSILLSATLTPATC--WCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 218
L++Q+ Q ++ TP +++ + ++ LV+DEADR+L++G++ ++ E
Sbjct: 240 LRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEI 299
Query: 219 LEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
L ++ K K Q ++L SAT+ +Q L ++LQ P++I
Sbjct: 300 LSLIPKHKRQ--TLLFSATMNTRIQDLIQLSLQKPVRI 335
>UNIPROTKB|Q2KEF1 [details] [associations]
symbol:MGCH7_ch7g1085 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
GO:GO:0008026 ProteinModelPortal:Q2KEF1 Uniprot:Q2KEF1
Length = 568
Score = 471 (170.9 bits), Expect = 3.8e-46, Sum P(2) = 3.8e-46
Identities = 124/387 (32%), Positives = 198/387 (51%)
Query: 387 FAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPIL-DGGDVLVRSQTGSGKTLA 445
FA + E + P + + + + +++ VQ +I+ ++ D GDVL +++TG+GKT+A
Sbjct: 74 FADLASENL--LDPVLLDTITQDLKFDRMSPVQAATIRHLIADRGDVLAQAKTGTGKTIA 131
Query: 446 YAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE 505
+ +P +Q L RP SR + + ++I PTRELALQ + L + GG
Sbjct: 132 FLLPALQTLLR-RPS-SRGNDVSVLVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGT 189
Query: 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKF-SKVEHLVLDEADRILDQGYERDIA 564
+E+ RI +G IL+ TPGRL+DH + + V+ VLDEADR+LD G+ +
Sbjct: 190 NKDAEQRRILRGCQILIGTPGRLMDHLEEQSVAEMLQSVDTFVLDEADRLLDMGFMPQLK 249
Query: 565 EFLEIL-KKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD 623
+ + L +QK Q +L SAT+ V +++ + L + + NT + +P
Sbjct: 250 KIVAALPNRQKVPRQGMLFSATVAEHVAKVSSIALAPDYKFISTIPKGESNTHER--VP- 306
Query: 624 SLKQHFIVTPP-KLRLVALASFILGK-CQNVNEDEESKMLVFMATQDMADYHTELLSTVL 681
QH I P + AL + + ++ N+DE K +VF T + D++ +L L
Sbjct: 307 ---QHLIEVPNFSDTMAALVGALRHELAESANQDE-FKAIVFAPTAALVDFYAAVLEG-L 361
Query: 682 GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSS 741
LH M+QS+RT V + +R + VL+ TDV ARG+D P V + Q P
Sbjct: 362 PNMPRILTLHSRMTQSKRTRVTEDYRKSNATVLVATDVVARGMDFPSVTNVFQVGLPMDK 421
Query: 742 TDYVHRVGRTARVGHEGSSLLFLIPSE 768
Y+HR+GRTAR G EG + +E
Sbjct: 422 ESYIHRLGRTARAGAEGRGTFIVSAAE 448
Score = 271 (100.5 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
Identities = 67/179 (37%), Positives = 100/179 (55%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M+ Q T++ L I D GDVL +++TG+GKT+A+ +P +Q L RP SR + +
Sbjct: 100 MSPVQAATIRHL----IADRGDVLAQAKTGTGKTIAFLLPALQTLLR-RPS-SRGNDVSV 153
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++I PTRELALQ + L + GG +E+ RI +G IL+ TPGRL+
Sbjct: 154 LVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGTNKDAEQRRILRGCQILIGTPGRLM 213
Query: 121 DHCKHTETLKF-SKVEHLVLDEADRILDQGYERDIAEFLEIL-KKQKPQFQSILLSATL 177
DH + + V+ VLDEADR+LD G+ + + + L +QK Q +L SAT+
Sbjct: 214 DHLEEQSVAEMLQSVDTFVLDEADRLLDMGFMPQLKKIVAALPNRQKVPRQGMLFSATV 272
Score = 47 (21.6 bits), Expect = 3.8e-46, Sum P(2) = 3.8e-46
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 838 KGYTSWVRFYASYSKDL 854
K Y SW+ FY ++K L
Sbjct: 486 KAYQSWLGFYKVFTKPL 502
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 326 (119.8 bits), Expect = 7.0e-46, Sum P(2) = 7.0e-46
Identities = 81/216 (37%), Positives = 124/216 (57%)
Query: 394 EFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK 453
E G+ + + + E + T VQ+ +I IL DV+V +QTG+GKT + +P++Q+
Sbjct: 13 EVLGLSAELLRAIRE-QGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQR 71
Query: 454 LQEMRPKISR--KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
L RP + R K I A+I+ PTRELA+Q E K + + + + GG +K +
Sbjct: 72 LFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGK-YLPLKATVVHGGVSIKPQI 130
Query: 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571
+R+G+ ILVATPGRLLD + L S+VE VLDEADR+LD G+ DI L++L
Sbjct: 131 NHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Query: 572 KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607
+ + Q++L SAT + ++ L L +P I+ A
Sbjct: 190 ESR---QNLLFSATFSKEIKELTDKLLHSPALIEVA 222
Score = 303 (111.7 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 73/174 (41%), Positives = 107/174 (61%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR--KDGIYAVIIL 64
T VQ+ +I IL DV+V +QTG+GKT + +P++Q+L RP + R K I A+I+
Sbjct: 34 TPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILT 93
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA+Q E K + + + + GG +K + +R+G+ ILVATPGRLLD
Sbjct: 94 PTRELAVQVFECVRAYGK-YLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRLLD-LV 151
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ L S+VE VLDEADR+LD G+ DI L++L + + Q++L SAT +
Sbjct: 152 NQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR---QNLLFSATFS 202
Score = 194 (73.4 bits), Expect = 7.0e-46, Sum P(2) = 7.0e-46
Identities = 46/149 (30%), Positives = 83/149 (55%)
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
H + + R L SF++G +N + +LVF T+ A+ ++ L + + ++
Sbjct: 233 HVVHPVDRQRKRELLSFMIGS-KNWRQ-----VLVFTRTKHGANRLSQQLES---DGLSS 283
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG+ SQ+ R F+ K VL+ TDVAARGLD+ + ++ + P ++ DYVHR
Sbjct: 284 AAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHR 343
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
VGRT R ++G ++ + EV+L+ +++
Sbjct: 344 VGRTGRASNDGVAISLVSGDEVRLLRDIE 372
Score = 123 (48.4 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L S+VE VLDEADR+LD G+ DI L++L + + Q++L SAT + ++ L
Sbjct: 156 LNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR---QNLLFSATFSKEIKELTDKL 212
Query: 250 LQNPIQIDAA 259
L +P I+ A
Sbjct: 213 LHSPALIEVA 222
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 326 (119.8 bits), Expect = 7.0e-46, Sum P(2) = 7.0e-46
Identities = 81/216 (37%), Positives = 124/216 (57%)
Query: 394 EFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK 453
E G+ + + + E + T VQ+ +I IL DV+V +QTG+GKT + +P++Q+
Sbjct: 13 EVLGLSAELLRAIRE-QGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQR 71
Query: 454 LQEMRPKISR--KDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
L RP + R K I A+I+ PTRELA+Q E K + + + + GG +K +
Sbjct: 72 LFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGK-YLPLKATVVHGGVSIKPQI 130
Query: 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571
+R+G+ ILVATPGRLLD + L S+VE VLDEADR+LD G+ DI L++L
Sbjct: 131 NHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Query: 572 KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607
+ + Q++L SAT + ++ L L +P I+ A
Sbjct: 190 ESR---QNLLFSATFSKEIKELTDKLLHSPALIEVA 222
Score = 303 (111.7 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 73/174 (41%), Positives = 107/174 (61%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISR--KDGIYAVIIL 64
T VQ+ +I IL DV+V +QTG+GKT + +P++Q+L RP + R K I A+I+
Sbjct: 34 TPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILT 93
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA+Q E K + + + + GG +K + +R+G+ ILVATPGRLLD
Sbjct: 94 PTRELAVQVFECVRAYGK-YLPLKATVVHGGVSIKPQINHLRRGVDILVATPGRLLD-LV 151
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ L S+VE VLDEADR+LD G+ DI L++L + + Q++L SAT +
Sbjct: 152 NQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR---QNLLFSATFS 202
Score = 194 (73.4 bits), Expect = 7.0e-46, Sum P(2) = 7.0e-46
Identities = 46/149 (30%), Positives = 83/149 (55%)
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
H + + R L SF++G +N + +LVF T+ A+ ++ L + + ++
Sbjct: 233 HVVHPVDRQRKRELLSFMIGS-KNWRQ-----VLVFTRTKHGANRLSQQLES---DGLSS 283
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG+ SQ+ R F+ K VL+ TDVAARGLD+ + ++ + P ++ DYVHR
Sbjct: 284 AAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHR 343
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
VGRT R ++G ++ + EV+L+ +++
Sbjct: 344 VGRTGRASNDGVAISLVSGDEVRLLRDIE 372
Score = 123 (48.4 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L S+VE VLDEADR+LD G+ DI L++L + + Q++L SAT + ++ L
Sbjct: 156 LNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR---QNLLFSATFSKEIKELTDKL 212
Query: 250 LQNPIQIDAA 259
L +P I+ A
Sbjct: 213 LHSPALIEVA 222
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 314 (115.6 bits), Expect = 7.5e-46, Sum P(2) = 7.5e-46
Identities = 75/205 (36%), Positives = 120/205 (58%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +Q+ SI IL DV+ R+QTG+GKT A+A+PI+Q+L ++P K + A+++ PT
Sbjct: 29 TEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPC---KPELRALVLTPT 85
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA Q + F + FT + GG K + + ++ G+ IL+ATPGRLLD + T
Sbjct: 86 RELAQQVHKSFCHYGQ-FTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-T 143
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
E++ S +E LV DEADR+LD G++ +I + + L K K Q++L SAT + +++
Sbjct: 144 ESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK---QTLLFSATFADDIYKMSK 200
Query: 596 MTLQNPIQIDAADSTDIHNTTDSLV 620
L P ++ + + + LV
Sbjct: 201 NILVEPKMVEIDEKNKAADDVEQLV 225
Score = 299 (110.3 bits), Expect = 5.7e-42, Sum P(2) = 5.7e-42
Identities = 71/170 (41%), Positives = 107/170 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ SI IL DV+ R+QTG+GKT A+A+PI+Q+L ++P K + A+++ PT
Sbjct: 29 TEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPC---KPELRALVLTPT 85
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q + F + FT + GG K + + ++ G+ IL+ATPGRLLD + T
Sbjct: 86 RELAQQVHKSFCHYGQ-FTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-T 143
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
E++ S +E LV DEADR+LD G++ +I + + L K K Q++L SAT
Sbjct: 144 ESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK---QTLLFSAT 190
Score = 206 (77.6 bits), Expect = 7.5e-46, Sum P(2) = 7.5e-46
Identities = 56/170 (32%), Positives = 91/170 (53%)
Query: 641 LASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERT 700
L SF++G +N + +LVF T+ AD +L + + + +HG SQ R
Sbjct: 236 LTSFLIGS-RNWKQ-----VLVFTRTKQCAD---DLAKEMTKDGVKSLAIHGDKSQGARE 286
Query: 701 EVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760
+ F+ K LI TDVAARG+D+ + ++ Y P ++ DYVHR+GRTAR G+ G +
Sbjct: 287 KALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLA 346
Query: 761 LLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGN 810
+ + P E L+ ++ + +I+L LQ L E DL+++A+ N
Sbjct: 347 VSLVSPGEEWLLTAIEE----LLDIQL---LQQWLP-GYELDLTKIANSN 388
Score = 121 (47.7 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 187 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA 246
TE++ S +E LV DEADR+LD G++ +I + + L K K Q++L SAT + +++
Sbjct: 143 TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK---QTLLFSATFADDIYKMS 199
Query: 247 GMTLQNPIQIDAADSTDIHNTTDSLV 272
L P ++ + + + LV
Sbjct: 200 KNILVEPKMVEIDEKNKAADDVEQLV 225
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 314 (115.6 bits), Expect = 7.5e-46, Sum P(2) = 7.5e-46
Identities = 75/205 (36%), Positives = 120/205 (58%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +Q+ SI IL DV+ R+QTG+GKT A+A+PI+Q+L ++P K + A+++ PT
Sbjct: 29 TEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPC---KPELRALVLTPT 85
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA Q + F + FT + GG K + + ++ G+ IL+ATPGRLLD + T
Sbjct: 86 RELAQQVHKSFCHYGQ-FTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-T 143
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
E++ S +E LV DEADR+LD G++ +I + + L K K Q++L SAT + +++
Sbjct: 144 ESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK---QTLLFSATFADDIYKMSK 200
Query: 596 MTLQNPIQIDAADSTDIHNTTDSLV 620
L P ++ + + + LV
Sbjct: 201 NILVEPKMVEIDEKNKAADDVEQLV 225
Score = 299 (110.3 bits), Expect = 5.7e-42, Sum P(2) = 5.7e-42
Identities = 71/170 (41%), Positives = 107/170 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ SI IL DV+ R+QTG+GKT A+A+PI+Q+L ++P K + A+++ PT
Sbjct: 29 TEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPC---KPELRALVLTPT 85
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q + F + FT + GG K + + ++ G+ IL+ATPGRLLD + T
Sbjct: 86 RELAQQVHKSFCHYGQ-FTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-T 143
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
E++ S +E LV DEADR+LD G++ +I + + L K K Q++L SAT
Sbjct: 144 ESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK---QTLLFSAT 190
Score = 206 (77.6 bits), Expect = 7.5e-46, Sum P(2) = 7.5e-46
Identities = 56/170 (32%), Positives = 91/170 (53%)
Query: 641 LASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERT 700
L SF++G +N + +LVF T+ AD +L + + + +HG SQ R
Sbjct: 236 LTSFLIGS-RNWKQ-----VLVFTRTKQCAD---DLAKEMTKDGVKSLAIHGDKSQGARE 286
Query: 701 EVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSS 760
+ F+ K LI TDVAARG+D+ + ++ Y P ++ DYVHR+GRTAR G+ G +
Sbjct: 287 KALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLA 346
Query: 761 LLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGN 810
+ + P E L+ ++ + +I+L LQ L E DL+++A+ N
Sbjct: 347 VSLVSPGEEWLLTAIEE----LLDIQL---LQQWLP-GYELDLTKIANSN 388
Score = 121 (47.7 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 187 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA 246
TE++ S +E LV DEADR+LD G++ +I + + L K K Q++L SAT + +++
Sbjct: 143 TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK---QTLLFSATFADDIYKMS 199
Query: 247 GMTLQNPIQIDAADSTDIHNTTDSLV 272
L P ++ + + + LV
Sbjct: 200 KNILVEPKMVEIDEKNKAADDVEQLV 225
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 331 (121.6 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 88/252 (34%), Positives = 136/252 (53%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
G+ P + + + E + T +QQ +I +L+G D++ +QTG+GKT + +P++Q L
Sbjct: 7 GLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 65
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
+P + + A+I+ PTRELA Q E K I + GG + + ++R
Sbjct: 66 RQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRG 124
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
G+ +LVATPGRLLD +H +K +VE LVLDEADR+LD G+ DI +L K +
Sbjct: 125 GVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRR---VLTKLPAK 180
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636
Q++L SAT + ++ LA L NP++I+ A NT V + HF+ K
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVAR----RNTASDQV---TQHVHFV---DKK 230
Query: 637 RLVALASFILGK 648
R L S ++GK
Sbjct: 231 RKRELLSHMIGK 242
Score = 289 (106.8 bits), Expect = 1.5e-38, Sum P(2) = 1.5e-38
Identities = 67/172 (38%), Positives = 101/172 (58%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +QQ +I +L+G D++ +QTG+GKT + +P++Q L +P + + A+I+ PT
Sbjct: 25 TPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPT 84
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E K I + GG + + ++R G+ +LVATPGRLLD +H
Sbjct: 85 RELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLD-LEHQ 142
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+K +VE LVLDEADR+LD G+ DI +L K + Q++L SAT +
Sbjct: 143 NAVKLDQVEILVLDEADRMLDMGFIHDIRR---VLTKLPAKRQNLLFSATFS 191
Score = 196 (74.1 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 52/154 (33%), Positives = 78/154 (50%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
D + QH K R L S ++GK ++LVF T+ A++ E L+
Sbjct: 218 DQVTQHVHFVDKK-RKRELLSHMIGK------GNWQQVLVFTRTKHGANHLAEQLNK--- 267
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+ I +HG+ SQ RT F+S VL+ TD+AARGLD+ + +V Y P+
Sbjct: 268 DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPE 327
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
DYVHR+GRT R G +L + E KL+ +++
Sbjct: 328 DYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIE 361
Score = 141 (54.7 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 42/116 (36%), Positives = 61/116 (52%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
+H +K +VE LVLDEADR+LD G+ DI +L K + Q++L SAT + ++
Sbjct: 140 EHQNAVKLDQVEILVLDEADRMLDMGFIHDIRR---VLTKLPAKRQNLLFSATFSDDIKA 196
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 300
LA L NP++I+ A NT V + HF+ K R L S ++GK
Sbjct: 197 LAEKLLHNPLEIEVAR----RNTASDQV---TQHVHFV---DKKRKRELLSHMIGK 242
Score = 38 (18.4 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 195 VEHLVLDEADRILDQGYERD 214
+E L+ E RI GYE D
Sbjct: 360 IEKLLKKEIPRIAIPGYEPD 379
Score = 38 (18.4 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 543 VEHLVLDEADRILDQGYERD 562
+E L+ E RI GYE D
Sbjct: 360 IEKLLKKEIPRIAIPGYEPD 379
>POMBASE|SPBC691.04 [details] [associations]
symbol:SPBC691.04 "mitochondrial ATP-dependent RNA
helicase Mss116 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005759 "mitochondrial matrix" evidence=ISS]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC691.04 GO:GO:0005524
GO:GO:0006417 GO:GO:0008380 GO:GO:0005759 EMBL:CU329671
GO:GO:0006397 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0032543
EMBL:AB004535 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:NP_595596.1 ProteinModelPortal:O13622 STRING:O13622
EnsemblFungi:SPBC691.04.1 GeneID:2541136 KEGG:spo:SPBC691.04
OrthoDB:EOG437VPN NextBio:20802249 Uniprot:O13622
Length = 535
Score = 481 (174.4 bits), Expect = 6.1e-45, P = 6.1e-45
Identities = 133/424 (31%), Positives = 220/424 (51%)
Query: 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYA 447
PT + E + K +L+ ++T VQQ + + + +V+++TG+GKTLA+
Sbjct: 36 PTLFSEVASLSSTFKNSLSRA-GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFL 94
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE-K 506
+ + + + +P+++ I++VI+ PTRELALQ E KL T I S+ GG K
Sbjct: 95 LVAFKDVLKGKPRLNSSK-IHSVILSPTRELALQIFEEARKLTYG-TGIRVSYAIGGNSK 152
Query: 507 MKSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565
M+ E A IR+G ++L+ATPGRL DH ++ L+ + +LDEADR++D G+ I
Sbjct: 153 MREENA-IRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILN 211
Query: 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625
E + K + + SAT+ P V + L ++ + D + +P
Sbjct: 212 IHEAVTTTKTR--KLCFSATMPPKVSNVFRGILGTDFKL--INCLDPNEPPTHERVPQ-- 265
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685
F++ KL V +S L + Q + + S+++VF+ T M D+ +L L I
Sbjct: 266 ---FVIET-KLDKVFSSSLSLLQ-QLTSSNPSSRIIVFLPTISMVDFVGGVLENHL--KI 318
Query: 686 AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYV 745
F LH ++ ++R + ++FR +SG+L TDV ARG+D P + +VQ T PS++ DY+
Sbjct: 319 PCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYI 378
Query: 746 HRVGRTARVGHEGSSLLFLIPSE---VKLVEELQNRRIRIEEIKLKDCLQNLLS-VKMEG 801
HR+GRT R G G + L L+ E + ++ L +R IE + L L S ++
Sbjct: 379 HRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPLKRATIEPLS-DQALSTLRSDIEKSS 437
Query: 802 DLSR 805
SR
Sbjct: 438 KFSR 441
Score = 254 (94.5 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 64/178 (35%), Positives = 104/178 (58%)
Query: 5 QVTTVQQLSIQPILDGGD-VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
++T VQQ + + + +V+++TG+GKTLA+ + + + + +P+++ I++VI+
Sbjct: 60 KMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSK-IHSVIL 118
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE-KMKSEKARIRKG-ISILVATPGRLLD 121
PTRELALQ E KL T I S+ GG KM+ E A IR+G ++L+ATPGRL D
Sbjct: 119 SPTRELALQIFEEARKLTYG-TGIRVSYAIGGNSKMREENA-IRRGNANLLIATPGRLED 176
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
H ++ L+ + +LDEADR++D G+ I E + K + + SAT+ P
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTR--KLCFSATMPP 232
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 313 (115.2 bits), Expect = 6.4e-45, Sum P(2) = 6.4e-45
Identities = 77/242 (31%), Positives = 137/242 (56%)
Query: 379 LKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQT 438
+ P +E F +++E + P + +++ E M T+ T +Q +I L+G D++ +QT
Sbjct: 114 IDPDAELKFK--TFKEL-NLVPDLLESI-ESMKFTKPTPIQSEAIPHALEGKDIIGLAQT 169
Query: 439 GSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVP 498
GSGKT A+AIPI+Q L + +A+++ PTREL Q + F L S +
Sbjct: 170 GSGKTAAFAIPILQSLWHAQQPY------FALVLAPTRELTFQIKDTFDALGSSMG-LRS 222
Query: 499 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG 558
S + GG M + + + ++VATPGR++DH +HT+ +++LV+DEADR+LD
Sbjct: 223 SCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMD 282
Query: 559 YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDS 618
+ + + L+++ ++ + L SAT+T +++L +L NP+++ A S + T D+
Sbjct: 283 FGPALDKILKVIPIKRTTY---LFSATMTNKIEKLQRASLHNPVRV-AVSSK--YQTADN 336
Query: 619 LV 620
LV
Sbjct: 337 LV 338
Score = 269 (99.8 bits), Expect = 7.8e-40, Sum P(2) = 7.8e-40
Identities = 61/178 (34%), Positives = 102/178 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T+ T +Q +I L+G D++ +QTGSGKT A+AIPI+Q L + +A
Sbjct: 141 MKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPY------FA 194
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTREL Q + F L S + S + GG M + + + ++VATPGR++
Sbjct: 195 LVLAPTRELTFQIKDTFDALGSSMG-LRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIM 253
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH +HT+ +++LV+DEADR+LD + + + L+++ ++ + L SAT+T
Sbjct: 254 DHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTY---LFSATMT 308
Score = 237 (88.5 bits), Expect = 6.4e-45, Sum P(2) = 6.4e-45
Identities = 54/146 (36%), Positives = 84/146 (57%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+NE ++VF T A T LL+ +LG N LHG +SQS+R F+S ++
Sbjct: 357 LNEFMGKSIIVFTRTVAHAQ-RTALLARILGFNAV--PLHGQLSQSQRLGSLNKFKSNQA 413
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
+L+ TDVAARGLD+P VD ++ Y P+ S Y+HRVGRTAR G G S+ + ++++
Sbjct: 414 NILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEM 473
Query: 772 ---VEELQNRRIRIEEIKLKDCLQNL 794
+E + +++ E+ K+ L L
Sbjct: 474 YLRIESVLGKKLPKEDKPPKEVLDAL 499
Score = 121 (47.7 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 27/88 (30%), Positives = 53/88 (60%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
+HT+ +++LV+DEADR+LD + + + L+++ ++ + L SAT+T +++
Sbjct: 257 EHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTY---LFSATMTNKIEK 313
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLV 272
L +L NP+++ A S + T D+LV
Sbjct: 314 LQRASLHNPVRV-AVSSK--YQTADNLV 338
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 435 (158.2 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 105/301 (34%), Positives = 178/301 (59%)
Query: 382 VSEALFAPTSYEEFPG-IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGS 440
VSE L T++ G ++ + K + +G+ T +T +Q SI P+L+G DVL ++TGS
Sbjct: 59 VSEFL-TKTTFASLEGKVNANLLKAV-QGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGS 116
Query: 441 GKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSW 500
GKTLA+ +P I+ L ++ K + +G +I+ PTREL++QT + ++L + +
Sbjct: 117 GKTLAFLLPAIELLHKLNWK--QHNGTGVIIVSPTRELSMQTYGVLSELLEGSN-LTYGL 173
Query: 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE 560
+ GG +EK ++ KG+SILVATPGRLLDH ++T+ ++ L++DEADRILD G+E
Sbjct: 174 VMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFE 233
Query: 561 RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSL 619
++ + L L KQ+ QS+L SAT +P V L + L NP+++ +H +
Sbjct: 234 IEMQQVLRHLPKQR---QSMLFSATHSPKVDELVKLALHSNPVRVS------VHEKAEEA 284
Query: 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST 679
+ + L+Q +IV P RL+ L +F+ +++ K++VF ++ + +H ELL+
Sbjct: 285 TV-EGLQQGYIVAPSDKRLLLLFTFL-------KKNKTKKVMVFFSSCNSVKFHHELLNY 336
Query: 680 V 680
+
Sbjct: 337 I 337
Score = 353 (129.3 bits), Expect = 5.7e-32, Sum P(2) = 5.7e-32
Identities = 90/246 (36%), Positives = 141/246 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ T +T +Q SI P+L+G DVL ++TGSGKTLA+ +P I+ L ++ K + +G
Sbjct: 86 LGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWK--QHNGTGV 143
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTREL++QT + ++L + + + GG +EK ++ KG+SILVATPGRLL
Sbjct: 144 IIVSPTRELSMQTYGVLSELLEGSN-LTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLL 202
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
DH ++T+ ++ L++DEADRILD G+E ++ + L L KQ+ QS+L SAT +P
Sbjct: 203 DHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQR---QSMLFSATHSPK 259
Query: 181 TC----WCKHTETLKFSKVEHLVLDEAD-RILDQGY-----ERDIAEFLEILKKQKPQFQ 230
H+ ++ S H +EA L QGY ++ + LKK K +
Sbjct: 260 VDELVKLALHSNPVRVSV--HEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKV 317
Query: 231 SVLLSA 236
V S+
Sbjct: 318 MVFFSS 323
Score = 323 (118.8 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 79/243 (32%), Positives = 130/243 (53%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E ++L+ Q QS+L SAT +P V L + L + +H + + +
Sbjct: 235 EMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSN-----PVRVSVHEKAEEATV-EG 288
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q +IV P RL+ L +F+ +++ K++VF ++ + +H ELL+ + +
Sbjct: 289 LQQGYIVAPSDKRLLLLFTFL-------KKNKTKKVMVFFSSCNSVKFHHELLNYI---D 338
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
I +HG Q +RT F F ++G+L+CTDVAARGLD+P VDWIVQY +Y
Sbjct: 339 IPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREY 398
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLK-DCLQNLLSVKMEGD 802
+HRVGRTAR G +LL L P E+ + L+ ++ + E + + N+ S ++E
Sbjct: 399 IHRVGRTARGTNGSGKALLVLRPEELGFLRYLKAAKVTLNEFEFSWSKVANIQS-QLENL 457
Query: 803 LSR 805
+S+
Sbjct: 458 ISK 460
Score = 171 (65.3 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 45/147 (30%), Positives = 82/147 (55%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ ++ L++DEADRILD G+E ++ + L L KQ+ QS+L SAT +P V
Sbjct: 206 QNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQR---QSMLFSATHSPKVDE 262
Query: 245 LAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 303
L + L NP+++ +H + + + L+Q +IV P RL+ L +F+
Sbjct: 263 LVKLALHSNPVRVS------VHEKAEEATV-EGLQQGYIVAPSDKRLLLLFTFL------ 309
Query: 304 VNEDEESKMLVFMATQDMADYHTELLS 330
+++ K++VF ++ + +H ELL+
Sbjct: 310 -KKNKTKKVMVFFSSCNSVKFHHELLN 335
Score = 68 (29.0 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q E+ + + L+ SA + Y ++R Y S+S L+ IF+ + L +KSF
Sbjct: 450 IQSQLENLISKNYYLNKSAKEAYKCYLRAYDSHS--LKDIFDVTNMDLTAVSKSFGFSVP 507
Query: 878 PSV 880
P V
Sbjct: 508 PFV 510
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 474 (171.9 bits), Expect = 3.5e-44, P = 3.5e-44
Identities = 129/402 (32%), Positives = 205/402 (50%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
+ + Q T VQ I IL+G D L ++TGSGKT A+ +PI+QKL E P GI+
Sbjct: 20 LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE-DPY-----GIFC 73
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
+++ PTRELA Q E F L K + + GG M ++ + + +++ATPGRL
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVTQALELSRKPHVVIATPGRLA 132
Query: 530 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 589
DH + + T K+ LVLDEADR+L+QG A+ IL + Q++L SATLT
Sbjct: 133 DHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQTLLFSATLTDT 192
Query: 590 VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKC 649
++ L G+ P +A T V + L Q +++ P K++ L +
Sbjct: 193 LKELQGLATNQPFFWEA-------QATVRTV--EQLDQRYLLVPEKVKDAYLVHLV---- 239
Query: 650 QNVNED-EESKMLVFMATQDMADYHTELLSTVLGE-NIAFFKLHGSMSQSERTEVFKTFR 707
Q + E+ +++F T ++L +L + N LH M Q ER F+
Sbjct: 240 QTFQDQLEDCSIIIFTNTCKTC----QILCMMLRKFNFPTVALHSMMKQKERFAALARFK 295
Query: 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767
S +LI TDVA+RGLD+P V ++ + P Y+HRVGRTAR G +G ++ +
Sbjct: 296 SSTYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQY 355
Query: 768 EVKLV----EELQNR--RIRIEEIKLKDCLQNLLSVKMEGDL 803
++ L+ EE++ + + +EE ++ L + V+ E ++
Sbjct: 356 DIHLLHAIEEEIKQQLAELAVEEAQVLQILTQVNVVRRECEI 397
Score = 286 (105.7 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 71/178 (39%), Positives = 101/178 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + Q T VQ I IL+G D L ++TGSGKT A+ +PI+QKL E P GI+
Sbjct: 20 LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE-DPY-----GIFC 73
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA Q E F L K + + GG M ++ + + +++ATPGRL
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVTQALELSRKPHVVIATPGRLA 132
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH + + T K+ LVLDEADR+L+QG A+ IL + Q++L SATLT
Sbjct: 133 DHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQTLLFSATLT 190
Score = 135 (52.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 51/178 (28%), Positives = 83/178 (46%)
Query: 108 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 167
GI LV TP R L + + + +V L D I+ G + + + LE+ +KP
Sbjct: 70 GIFCLVLTPTRELAY----QIAEQFRVLGKPLGLKDCIIVGGMDM-VTQALEL--SRKPH 122
Query: 168 FQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 227
++ AT + + T K+ LVLDEADR+L+QG A+ IL
Sbjct: 123 ----VVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPA 178
Query: 228 QFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIV 283
+ Q++L SATLT ++ L G+ P +A + D L++P+ +K ++V
Sbjct: 179 RRQTLLFSATLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLV 236
>CGD|CAL0004436 [details] [associations]
symbol:MSS116 species:5476 "Candida albicans" [GO:0005759
"mitochondrial matrix" evidence=IEA] [GO:0000373 "Group II intron
splicing" evidence=IEA] [GO:0034337 "RNA folding" evidence=IEA]
[GO:0000372 "Group I intron splicing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0033592
"RNA strand annealing activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004436 GO:GO:0005524
GO:GO:0006417 GO:GO:0008380 GO:GO:0005759 GO:GO:0006397
GO:GO:0003723 EMBL:AACQ01000001 EMBL:AACQ01000002
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_723235.1 RefSeq:XP_723426.1 ProteinModelPortal:Q5APM7
GeneID:3634792 GeneID:3635042 KEGG:cal:CaO19.12201
KEGG:cal:CaO19.4739 Uniprot:Q5APM7
Length = 668
Score = 483 (175.1 bits), Expect = 4.8e-44, P = 4.8e-44
Identities = 150/511 (29%), Positives = 265/511 (51%)
Query: 354 TEVKSGPISSLFQN-NPDIPNVPTRRLKPVSEALFAPTSYEEFPG---IHPFMKKNLNEG 409
T++ SG + D+P+ T + K SE+ F P +E+F G IH + +L++
Sbjct: 48 TDITSGSLKVKEDAAGSDLPSTKTDK-KSKSES-FQPVKFEDFKGKGYIHDSIINSLHKN 105
Query: 410 MNITQVTTVQQLSIQPILDGGDVLV-RSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468
+ ++T +QQ S+ PI + LV R++TG+GKTLA+A+P +Q + R K G+
Sbjct: 106 -DFKELTPIQQKSLVPIFNTEKGLVCRAKTGTGKTLAFAVPTLQYAYKNRGK-----GVS 159
Query: 469 AVIILPTRELALQTLEIFTKLCKSFTWIV-PSW--LTGGEKMKSEKARIRKGISILVATP 525
V+++PTR+LA Q E + KL + P+ + GG++ R+ I++ATP
Sbjct: 160 TVVLVPTRDLAFQIEEEYRKLISHLKYNERPNLELIIGGQRTSFNP---RRPAEIVIATP 216
Query: 526 GRLLDHCKHTETLK--FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK--PQ-FQSI 580
GRL + L FS V + + DEADR+LD G+E + E +L K + P+ +S+
Sbjct: 217 GRLEKELQTDRKLAKCFSNVTYRIYDEADRLLDVGFESVLNEIDGLLYKVRTTPKPIKSL 276
Query: 581 LLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVA 640
L SAT+ A+ + + +P + + ++ T D L IP+++ Q I + V
Sbjct: 277 LFSATVDEAISEFSKKHI-HP-EYEFLNTV----TKDDLEIPENIHQQLIECTDGIDKVN 330
Query: 641 LASFILGKCQNV-NEDEESKMLVFMATQDMADYHTELLSTVLGENI--AF------FKLH 691
++ L + + + + K++VF+ T+ D+ E ++ L + + F F LH
Sbjct: 331 VS---LSELHGIMKQHNDYKVIVFLPTKTAVDWFYEYITNALDDELFELFSKPPRVFMLH 387
Query: 692 GSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRT 751
G S +R+ K F+ K G+LI TDVAARG+D+ V ++Q DY+H+VGRT
Sbjct: 388 GGRSVRQRSAALKGFKVAKKGILISTDVAARGIDVKDVTNVIQMFPSVEIADYIHKVGRT 447
Query: 752 ARVGHEGSSLLFLIPSEVKLVEELQNRR-IRIEEIKLKDCLQ--NLLSVKMEGDLSRLAD 808
R G +G + LF P+E+ V L+ +R ++ +E+ + L N++ ++E L +
Sbjct: 448 GRAGKKGKASLFATPAELPYVSLLKRKRKVKFQEVIQSEKLNSSNIID-QIESPLDSTKE 506
Query: 809 ------GNVETAATALQMSFESAVLQQKILH 833
G ++ +A ++ ++S V++ L+
Sbjct: 507 FLATMVGYLQQLQSAHRLDYDSLVIENMELY 537
Score = 226 (84.6 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 66/185 (35%), Positives = 104/185 (56%)
Query: 5 QVTTVQQLSIQPILDGGDVLV-RSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
++T +QQ S+ PI + LV R++TG+GKTLA+A+P +Q + R K G+ V++
Sbjct: 109 ELTPIQQKSLVPIFNTEKGLVCRAKTGTGKTLAFAVPTLQYAYKNRGK-----GVSTVVL 163
Query: 64 LPTRELALQTLEIFTKLCKSFTWIV-PSW--LTGGEKMKSEKARIRKGISILVATPGRLL 120
+PTR+LA Q E + KL + P+ + GG++ R+ I++ATPGRL
Sbjct: 164 VPTRDLAFQIEEEYRKLISHLKYNERPNLELIIGGQRTSFNP---RRPAEIVIATPGRLE 220
Query: 121 DHCKHTETLK--FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK--PQ-FQSILLSA 175
+ L FS V + + DEADR+LD G+E + E +L K + P+ +S+L SA
Sbjct: 221 KELQTDRKLAKCFSNVTYRIYDEADRLLDVGFESVLNEIDGLLYKVRTTPKPIKSLLFSA 280
Query: 176 TLTPA 180
T+ A
Sbjct: 281 TVDEA 285
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 321 (118.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 78/230 (33%), Positives = 129/230 (56%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDG 466
+ +N ++ T +Q +I P L+G D++ +QTGSGKT A+AIPI+ +L + P
Sbjct: 97 KNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEP------- 149
Query: 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 526
YA I+ PTRELA Q E F L S + + + GG M + + + I++ATPG
Sbjct: 150 YYACILAPTRELAQQIKETFDSL-GSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPG 208
Query: 527 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586
RL+DH ++T+ K++ LV+DEADR+LD + + L+I+ Q+ + L SAT+
Sbjct: 209 RLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT--TYLFSATM 266
Query: 587 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV-----IPDSLKQHFIV 631
T + +L +L NP++ ++ + T D+LV +P LK +++
Sbjct: 267 TSKIDKLQRASLTNPVKCAVSNK---YQTVDTLVQTLMVVPGGLKNTYLI 313
Score = 281 (104.0 bits), Expect = 3.9e-39, Sum P(2) = 3.9e-39
Identities = 67/179 (37%), Positives = 104/179 (58%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIY 59
+N ++ T +Q +I P L+G D++ +QTGSGKT A+AIPI+ +L + P Y
Sbjct: 99 LNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEP-------YY 151
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
A I+ PTRELA Q E F L S + + + GG M + + + I++ATPGRL
Sbjct: 152 ACILAPTRELAQQIKETFDSL-GSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRL 210
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+DH ++T+ K++ LV+DEADR+LD + + L+I+ Q+ + L SAT+T
Sbjct: 211 MDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT--TYLFSATMT 267
Score = 215 (80.7 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 55/166 (33%), Positives = 90/166 (54%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
D+L Q +V P L+ L ++L NE M++F T+ A+ + L + +
Sbjct: 294 DTLVQTLMVVPGGLKNTYLI-YLL------NEFIGKTMIIFTRTKANAERLSGLCNLL-- 344
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+ LHG ++Q++R F++ K +L+ TDVAARGLD+P VD +V Y P S
Sbjct: 345 -EFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSK 403
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLV---EELQNRRIRIEEI 785
Y+HRVGRTAR G G S+ + +++L+ EE+ +++ E +
Sbjct: 404 SYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESV 449
Score = 118 (46.6 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 34/106 (32%), Positives = 58/106 (54%)
Query: 186 HTETLK-FS--KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAV 242
H E K FS K++ LV+DEADR+LD + + L+I+ Q+ + L SAT+T +
Sbjct: 213 HLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERT--TYLFSATMTSKI 270
Query: 243 QRLAGMTLQNPIQIDAADSTDIHNTTDSLV-----IPDSLKQHFIV 283
+L +L NP++ ++ + T D+LV +P LK +++
Sbjct: 271 DKLQRASLTNPVKCAVSNK---YQTVDTLVQTLMVVPGGLKNTYLI 313
Score = 42 (19.8 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 409 GMNITQVTTVQQLSIQPILDGGDVLVR----SQTG-SGKTLA----YAIPIIQKLQEMRP 459
G++I V V I P+ D + R ++ G SGK+++ Y + +I +++E+
Sbjct: 384 GLDIPSVDIVVNYDI-PV-DSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLG 441
Query: 460 KISRKDGIYAVIILPTRE 477
K K+ + IIL R+
Sbjct: 442 KKLPKESVDKNIILTLRD 459
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 319 (117.4 bits), Expect = 9.2e-44, Sum P(2) = 9.2e-44
Identities = 82/227 (36%), Positives = 134/227 (59%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-Q 455
G+ + + L+E + + T +Q SI P++ G D+L ++QTG+GKT A+A+P++ K+
Sbjct: 12 GLSENLLRALDE-LGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTS 70
Query: 456 EMRPKISRKDGIYAVIILPTRELALQTLEIFT---KLCKSFTWIVPSWLTGGEKMKSEKA 512
+ P+I +++ PTRELA+Q E F+ K K+F ++P + GG+ M+ +
Sbjct: 71 QTTPQI--------LVLAPTRELAVQVAEAFSSYAKFMKNFH-VLPIY--GGQSMQQQLN 119
Query: 513 RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572
+++G ++V TPGR++DH + TLK ++ LVLDEAD +L G+ DI E+ IL+
Sbjct: 120 ALKRGPQVIVGTPGRVMDHMRRG-TLKLETLQALVLDEADEMLKMGFIDDI-EW--ILEH 175
Query: 573 QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSL 619
PQ Q L SAT+ ++R+A L+N I A S H T DS+
Sbjct: 176 TPPQRQLALFSATMPEQIKRVANKHLKNATNISIAAS---HTTVDSI 219
Score = 278 (102.9 bits), Expect = 3.9e-39, Sum P(2) = 3.9e-39
Identities = 68/175 (38%), Positives = 109/175 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIYAVIILP 65
T +Q SI P++ G D+L ++QTG+GKT A+A+P++ K+ + P+I +++ P
Sbjct: 30 TPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQTTPQI--------LVLAP 81
Query: 66 TRELALQTLEIFT---KLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
TRELA+Q E F+ K K+F ++P + GG+ M+ + +++G ++V TPGR++DH
Sbjct: 82 TRELAVQVAEAFSSYAKFMKNFH-VLPIY--GGQSMQQQLNALKRGPQVIVGTPGRVMDH 138
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
+ TLK ++ LVLDEAD +L G+ DI E+ IL+ PQ Q L SAT+
Sbjct: 139 MRRG-TLKLETLQALVLDEADEMLKMGFIDDI-EW--ILEHTPPQRQLALFSATM 189
Score = 224 (83.9 bits), Expect = 9.2e-44, Sum P(2) = 9.2e-44
Identities = 70/260 (26%), Positives = 123/260 (47%)
Query: 587 TPAVQRLAGMTLQNPIQIDAADSTDIHNTTD-----SLVIPDSLKQHFIVTPPKLRLVAL 641
TP ++LA + P QI + + N T+ S DS++Q F+ +L AL
Sbjct: 176 TPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEAL 235
Query: 642 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701
+ V E+ E +++F+ T++ EL + A LHG M+Q R
Sbjct: 236 VRVL-----EV-ENTEG-IIIFVRTRNSC---VELAEKLEARGYASSPLHGDMNQQARER 285
Query: 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL 761
+ ++ K +LI TDVAARGLD+ + +V Y P + YVHR+GRT R G G ++
Sbjct: 286 AVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAI 345
Query: 762 LFLIPSEVKL---VEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATAL 818
LF+ E+++ +E N RI ++ + + ++ L++ + ++E A+
Sbjct: 346 LFVTSREMRMLRTIERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMNNDLEFMREAV 405
Query: 819 -----QMSFESAVLQQKILH 833
Q+ ++ +L +LH
Sbjct: 406 AQLCQQLEVDTDLLAAALLH 425
Score = 126 (49.4 bits), Expect = 0.00033, P = 0.00033
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
TLK ++ LVLDEAD +L G+ DI E+ IL+ PQ Q L SAT+ ++R+A
Sbjct: 143 TLKLETLQALVLDEADEMLKMGFIDDI-EW--ILEHTPPQRQLALFSATMPEQIKRVANK 199
Query: 249 TLQNPIQIDAADSTDIHNTTDSL 271
L+N I A S H T DS+
Sbjct: 200 HLKNATNISIAAS---HTTVDSI 219
Score = 45 (20.9 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 729 VDWIVQYTAPSS-----STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIE 783
++WI+++T P S ++ R A + ++ + + S V+ ++ R +++
Sbjct: 169 IEWILEHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTT-VDSIEQRFVQVS 227
Query: 784 EIKLKDCLQNLLSVK-MEG 801
+ + L +L V+ EG
Sbjct: 228 QHNKLEALVRVLEVENTEG 246
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 491 (177.9 bits), Expect = 9.3e-44, P = 9.3e-44
Identities = 132/402 (32%), Positives = 214/402 (53%)
Query: 375 PTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLV 434
PT S++ + T +++FP + P K + + +T VQ+ ++ IL G DVL
Sbjct: 367 PTGEHVKTSDSYLSKTRFDQFP-LSPLSLKAIKDA-GFETMTVVQEATLPIILQGKDVLA 424
Query: 435 RSQTGSGKTLAYAIPIIQKLQEMRP--KISRKDGIYAVIILPTRELALQTLEIFTKLCKS 492
+++TG+GKT+A+ +P I+ + + P + SR+ I +++ PTRELA Q L K
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKY 484
Query: 493 FTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDHCKHTE--TLKFSKVEHLVLD 549
I + GG K+ +E+ R++ ILVATPGRL DH ++T + V+ LVLD
Sbjct: 485 HPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLD 544
Query: 550 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ-IDAAD 608
EAD +LD G+ RDI + + KQ+ Q+ L SAT+ V+++ + L+ + I+
Sbjct: 545 EADHLLDMGFRRDIERIIAAVPKQR---QTFLFSATVPEEVRQICHVALKRDHEFINCVQ 601
Query: 609 --STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMAT 666
S + H + + SL +HF +L +L +++ ++ + K+++F T
Sbjct: 602 EGSGETHQKVTQMYMIASLDRHF----------SLLHVLLK--EHIADNVDYKVIIFCTT 649
Query: 667 QDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDL 726
+ +LLS L N+ ++H QS RT V FR K+ +L+ +DV+ARG+D
Sbjct: 650 AMVTRLVADLLSQ-LSLNVR--EIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDY 706
Query: 727 PLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768
P V +VQ PS Y+HR+GRT R G EG +L L P E
Sbjct: 707 PDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWE 748
Score = 282 (104.3 bits), Expect = 7.1e-21, P = 7.1e-21
Identities = 69/177 (38%), Positives = 105/177 (59%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP--KISRKDGIYAVII 63
+T VQ+ ++ IL G DVL +++TG+GKT+A+ +P I+ + + P + SR+ I +++
Sbjct: 405 MTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVV 464
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDH 122
PTRELA Q L K I + GG K+ +E+ R++ ILVATPGRL DH
Sbjct: 465 CPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDH 524
Query: 123 CKHTE--TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
++T + V+ LVLDEAD +LD G+ RDI + + KQ+ Q+ L SAT+
Sbjct: 525 IENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQR---QTFLFSATV 578
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 307 (113.1 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 75/194 (38%), Positives = 113/194 (58%)
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473
Q T +Q +I IL DV+ +QTG+GKT A+A+PI+Q L I A++++
Sbjct: 23 QPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLV 82
Query: 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
PTRELALQ + F K K T I GG +++++A GI +L+ATPGRLLDH +
Sbjct: 83 PTRELALQVQQSFVKYAKG-TDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLR 141
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
L +++ LV DEADR+LD G+ + E +LK+ Q Q++L SATL ++
Sbjct: 142 QG-ALNLNQLNTLVFDEADRMLDMGF---MDEIQAVLKQVPAQRQTLLFSATLDDSIFSF 197
Query: 594 AGMTLQNPIQIDAA 607
+ L++P +I+ A
Sbjct: 198 SKNLLRDPKRIEVA 211
Score = 294 (108.6 bits), Expect = 3.8e-40, Sum P(2) = 3.8e-40
Identities = 84/246 (34%), Positives = 130/246 (52%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
Q T +Q +I IL DV+ +QTG+GKT A+A+PI+Q L I A++++
Sbjct: 23 QPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLV 82
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELALQ + F K K T I GG +++++A GI +L+ATPGRLLDH +
Sbjct: 83 PTRELALQVQQSFVKYAKG-TDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLR 141
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAT-CW 183
L +++ LV DEADR+LD G+ + E +LK+ Q Q++L SATL + +
Sbjct: 142 QG-ALNLNQLNTLVFDEADRMLDMGF---MDEIQAVLKQVPAQRQTLLFSATLDDSIFSF 197
Query: 184 CKHT----ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239
K+ + ++ +K R+ +R EF+ L + K +Q VL+ +
Sbjct: 198 SKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRK-TEFVSHLVRSK-NWQQVLIFSRTK 255
Query: 240 PAVQRL 245
V +L
Sbjct: 256 QGVDKL 261
Score = 191 (72.3 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 41/118 (34%), Positives = 67/118 (56%)
Query: 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
++L+F T+ D T L+ LG +A HG +SQ R +V + F+ VL+ TD
Sbjct: 247 QVLIFSRTKQGVDKLTAQLNK-LG--VATQSFHGDLSQGAREKVLQEFKQGLVQVLVATD 303
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
VAARGLD+ + +++ + P + DY+HR+GRT R G G ++ + L+EE++
Sbjct: 304 VAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVE 361
Score = 101 (40.6 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L +++ LV DEADR+LD G+ + E +LK+ Q Q++L SATL ++ +
Sbjct: 145 LNLNQLNTLVFDEADRMLDMGF---MDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNL 201
Query: 250 LQNPIQIDAA 259
L++P +I+ A
Sbjct: 202 LRDPKRIEVA 211
Score = 39 (18.8 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 540 FSKVEHLVLDEADRILDQ 557
FS+ + L+L+E + +LD+
Sbjct: 349 FSQEDALLLEEVETLLDK 366
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 307 (113.1 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 75/194 (38%), Positives = 113/194 (58%)
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473
Q T +Q +I IL DV+ +QTG+GKT A+A+PI+Q L I A++++
Sbjct: 23 QPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLV 82
Query: 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
PTRELALQ + F K K T I GG +++++A GI +L+ATPGRLLDH +
Sbjct: 83 PTRELALQVQQSFVKYAKG-TDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLR 141
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
L +++ LV DEADR+LD G+ + E +LK+ Q Q++L SATL ++
Sbjct: 142 QG-ALNLNQLNTLVFDEADRMLDMGF---MDEIQAVLKQVPAQRQTLLFSATLDDSIFSF 197
Query: 594 AGMTLQNPIQIDAA 607
+ L++P +I+ A
Sbjct: 198 SKNLLRDPKRIEVA 211
Score = 294 (108.6 bits), Expect = 3.8e-40, Sum P(2) = 3.8e-40
Identities = 84/246 (34%), Positives = 130/246 (52%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
Q T +Q +I IL DV+ +QTG+GKT A+A+PI+Q L I A++++
Sbjct: 23 QPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLV 82
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELALQ + F K K T I GG +++++A GI +L+ATPGRLLDH +
Sbjct: 83 PTRELALQVQQSFVKYAKG-TDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLR 141
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAT-CW 183
L +++ LV DEADR+LD G+ + E +LK+ Q Q++L SATL + +
Sbjct: 142 QG-ALNLNQLNTLVFDEADRMLDMGF---MDEIQAVLKQVPAQRQTLLFSATLDDSIFSF 197
Query: 184 CKHT----ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239
K+ + ++ +K R+ +R EF+ L + K +Q VL+ +
Sbjct: 198 SKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRK-TEFVSHLVRSK-NWQQVLIFSRTK 255
Query: 240 PAVQRL 245
V +L
Sbjct: 256 QGVDKL 261
Score = 191 (72.3 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 41/118 (34%), Positives = 67/118 (56%)
Query: 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
++L+F T+ D T L+ LG +A HG +SQ R +V + F+ VL+ TD
Sbjct: 247 QVLIFSRTKQGVDKLTAQLNK-LG--VATQSFHGDLSQGAREKVLQEFKQGLVQVLVATD 303
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
VAARGLD+ + +++ + P + DY+HR+GRT R G G ++ + L+EE++
Sbjct: 304 VAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVE 361
Score = 101 (40.6 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L +++ LV DEADR+LD G+ + E +LK+ Q Q++L SATL ++ +
Sbjct: 145 LNLNQLNTLVFDEADRMLDMGF---MDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNL 201
Query: 250 LQNPIQIDAA 259
L++P +I+ A
Sbjct: 202 LRDPKRIEVA 211
Score = 39 (18.8 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 540 FSKVEHLVLDEADRILDQ 557
FS+ + L+L+E + +LD+
Sbjct: 349 FSQEDALLLEEVETLLDK 366
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 467 (169.5 bits), Expect = 2.0e-43, P = 2.0e-43
Identities = 125/375 (33%), Positives = 200/375 (53%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
M ITQ T +Q+ I IL+G D + ++TGSGKT+A+A P++ K E P G++
Sbjct: 20 MKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSE-DPS-----GMFG 73
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
V++ PTRELA+Q E FT L S I S + GGE + + +++ ++ATPGRL
Sbjct: 74 VVLTPTRELAMQIAEQFTALGSSMN-IRVSVIVGGESIVQQALDLQRKPHFIIATPGRLA 132
Query: 530 DHCKHT--ETLK-FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586
H + +T+ + ++LVLDEAD +L + +A + L K + Q++L +AT+
Sbjct: 133 HHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPP-KDKRQTLLFTATI 191
Query: 587 TPAVQRLAGMTLQN-PIQIDAADSTDIH-NTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644
T V+ +LQN P+Q + D++ IP +LK +I+ P ++ L
Sbjct: 192 TDQVK-----SLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEAYLYQL 246
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE-NIAFFKLHGSMSQSERTEVF 703
+ C E+ E+K + + M E+L L + + LH M Q ERT
Sbjct: 247 LT--C----EEYENKTAIIFVNRTMT---AEILRRTLKQLEVRVASLHSQMPQQERTNSL 297
Query: 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763
FR+ + +LI TDVA+RGLD+P V+ +V Y PS ++HR GRTAR G G ++ F
Sbjct: 298 HRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISF 357
Query: 764 LIPSEVKLVEELQNR 778
+ +V ++ +++R
Sbjct: 358 VTQRDVSRIQAIEDR 372
Score = 251 (93.4 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 66/181 (36%), Positives = 104/181 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M ITQ T +Q+ I IL+G D + ++TGSGKT+A+A P++ K E P G++
Sbjct: 20 MKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSE-DPS-----GMFG 73
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
V++ PTRELA+Q E FT L S I S + GGE + + +++ ++ATPGRL
Sbjct: 74 VVLTPTRELAMQIAEQFTALGSSMN-IRVSVIVGGESIVQQALDLQRKPHFIIATPGRLA 132
Query: 121 DHCKHT--ETLK-FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
H + +T+ + ++LVLDEAD +L + +A + L K + Q++L +AT+
Sbjct: 133 HHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPP-KDKRQTLLFTATI 191
Query: 178 T 178
T
Sbjct: 192 T 192
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 329 (120.9 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 83/232 (35%), Positives = 131/232 (56%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK---DG 466
+ T+ T +QQ +I +L G D++ +QTG+GKT ++ +P++++L + +K
Sbjct: 19 LGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGKKLRAKR 78
Query: 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 526
I A+I++PTRELA+Q ++ K + I + GG + +K R+ G+ ILVATPG
Sbjct: 79 IRALILVPTRELAVQVEASISQYAK-YLDISSMAMYGGVDAQEQKQRLIWGVDILVATPG 137
Query: 527 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586
RLLD H L F +++ LVLDEADR+LD G+ DI + +E L + + Q++L SAT+
Sbjct: 138 RLLD-MTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHR---QNLLFSATM 193
Query: 587 TPAVQRLAGMTLQNPIQID-AADSTDIHNTTDSLVIPD-----SLKQHFIVT 632
+ V+ LA T+ P++I AD LV D +L H I T
Sbjct: 194 SEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANKSALLSHIITT 245
Score = 295 (108.9 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 68/181 (37%), Positives = 111/181 (61%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK---DG 57
+ T+ T +QQ +I +L G D++ +QTG+GKT ++ +P++++L + +K
Sbjct: 19 LGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGKKLRAKR 78
Query: 58 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 117
I A+I++PTRELA+Q ++ K + I + GG + +K R+ G+ ILVATPG
Sbjct: 79 IRALILVPTRELAVQVEASISQYAK-YLDISSMAMYGGVDAQEQKQRLIWGVDILVATPG 137
Query: 118 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
RLLD H L F +++ LVLDEADR+LD G+ DI + +E L + + Q++L SAT+
Sbjct: 138 RLLD-MTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHR---QNLLFSATM 193
Query: 178 T 178
+
Sbjct: 194 S 194
Score = 167 (63.8 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 46/160 (28%), Positives = 79/160 (49%)
Query: 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
+ ++VT K AL S I+ QN + L+F+ T+ A +L+S + I
Sbjct: 224 EQWLVTVDKANKSALLSHII-TTQNWQQ-----ALIFIETKHGA---AKLVSQLEKRGIV 274
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+H +Q R ++ F+S K L+ T +AARGLD+ + ++ Y P+ DY+H
Sbjct: 275 AESIHSGRAQDIREKILNDFKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIH 334
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIK 786
R+GRT R G G ++ + + + +++R I E K
Sbjct: 335 RIGRTGRAGASGEAISLVSKDNFRELCAIESRLGHIIERK 374
Score = 139 (54.0 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 70/264 (26%), Positives = 117/264 (44%)
Query: 31 SGKTLAYAIPIIQKLQEM---RPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 87
S TL + PI+ + ++ +P ++ I ++L +++ + + T SF
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAI--PVVLAGKDI-IAAAQTGTGKTASFVLP 58
Query: 88 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 147
+ L K +K R ++ I L+ P R L +++K LD + +
Sbjct: 59 LLEQLNSQYKETGKKLRAKR-IRALILVPTRELAVQVEASISQYAKY----LDISSMAMY 113
Query: 148 QGYERDIAEFLEILKKQKPQFQSILLSATLTPATCW-CKHTETLKFSKVEHLVLDEADRI 206
G D E +KQ+ + +L AT P H L F +++ LVLDEADR+
Sbjct: 114 GGV--DAQE-----QKQRLIWGVDILVAT--PGRLLDMTHQRVLHFDELDMLVLDEADRM 164
Query: 207 LDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID-AADSTDIH 265
LD G+ DI + +E L + + Q++L SAT++ V+ LA T+ P++I AD
Sbjct: 165 LDMGFIDDINKIIERLPEHR---QNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKP 221
Query: 266 NTTDSLVIPD-----SLKQHFIVT 284
LV D +L H I T
Sbjct: 222 KIEQWLVTVDKANKSALLSHIITT 245
>UNIPROTKB|G4MSR4 [details] [associations]
symbol:MGG_07099 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_003715292.1 EnsemblFungi:MGG_07099T0
GeneID:2682984 KEGG:mgr:MGG_07099 Uniprot:G4MSR4
Length = 717
Score = 483 (175.1 bits), Expect = 2.3e-43, P = 2.3e-43
Identities = 135/383 (35%), Positives = 202/383 (52%)
Query: 404 KNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK-------LQE 456
K + M +T VQ +++ P L G D++ +++TG+GKTLA+ IP+IQK L+E
Sbjct: 90 KAITVDMRYEDMTDVQSMTLAPALKGKDLVAQAKTGTGKTLAFLIPVIQKILDADPSLKE 149
Query: 457 M---RPK-ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA 512
+ RP+ +++ I A+II PTRELA Q + T+LC+ + GG +
Sbjct: 150 VSRGRPRRFAQRQSIKAIIISPTRELAEQIGKEATRLCQR-NGVTVQTAVGGTGKRESLR 208
Query: 513 RIR-KGISILVATPGRLLDHCK-HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570
RI +G +LV TPGRL D + S V+ LVLDEADR+LD G+E ++ +++L
Sbjct: 209 RIHMEGCHLLVGTPGRLNDLLSDELSGIDASNVQALVLDEADRMLDVGFENELRSIVDML 268
Query: 571 --KKQKPQFQSILLSATLTPAVQRLAGMTL--QNP--IQIDAADSTDIHNTTDSLVIPDS 624
++Q P+ Q++L SATL V LA + QN +Q AD H ++P S
Sbjct: 269 PDRQQVPR-QTLLFSATLPKNVVGLARWYVDKQNFEFVQTVRADEIQTHERVPQFIVPTS 327
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL---LSTVL 681
++ + P L L+ L K N K +VF +M EL L+ +
Sbjct: 328 SFENLL--PAALELM-LREIRAAK--NDPSQPPFKAIVFFPFTNMVAMAGELFRELAVQI 382
Query: 682 GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSS 741
+ F +H +SQ++RT+ FR KSG+LI TDV ARG+D P V ++Q P
Sbjct: 383 PDLPEVFHIHAQLSQNQRTKAADYFRKSKSGILISTDVTARGMDFPNVTHVIQVGLPPDQ 442
Query: 742 TDYVHRVGRTARVGHEGSSLLFL 764
Y+HR+GRTAR G +G LF+
Sbjct: 443 EQYIHRLGRTARAGKDGQGWLFV 465
Score = 280 (103.6 bits), Expect = 8.4e-21, P = 8.4e-21
Identities = 74/192 (38%), Positives = 114/192 (59%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK-------LQEM---RP 50
M +T VQ +++ P L G D++ +++TG+GKTLA+ IP+IQK L+E+ RP
Sbjct: 96 MRYEDMTDVQSMTLAPALKGKDLVAQAKTGTGKTLAFLIPVIQKILDADPSLKEVSRGRP 155
Query: 51 K-ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KG 108
+ +++ I A+II PTRELA Q + T+LC+ + GG + RI +G
Sbjct: 156 RRFAQRQSIKAIIISPTRELAEQIGKEATRLCQR-NGVTVQTAVGGTGKRESLRRIHMEG 214
Query: 109 ISILVATPGRLLDHCK-HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL--KKQK 165
+LV TPGRL D + S V+ LVLDEADR+LD G+E ++ +++L ++Q
Sbjct: 215 CHLLVGTPGRLNDLLSDELSGIDASNVQALVLDEADRMLDVGFENELRSIVDMLPDRQQV 274
Query: 166 PQFQSILLSATL 177
P+ Q++L SATL
Sbjct: 275 PR-QTLLFSATL 285
Score = 124 (48.7 bits), Expect = 0.00065, P = 0.00065
Identities = 46/142 (32%), Positives = 69/142 (48%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEIL--KKQKPQFQSVLLSATLTPAVQRLAGMTL 250
S V+ LVLDEADR+LD G+E ++ +++L ++Q P+ Q++L SATL V LA +
Sbjct: 239 SNVQALVLDEADRMLDVGFENELRSIVDMLPDRQQVPR-QTLLFSATLPKNVVGLARWYV 297
Query: 251 --QNP--IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNE 306
QN +Q AD H ++P S ++ + P L L+ L K N
Sbjct: 298 DKQNFEFVQTVRADEIQTHERVPQFIVPTSSFENLL--PAALELM-LREIRAAK--NDPS 352
Query: 307 DEESKMLVFMATQDMADYHTEL 328
K +VF +M EL
Sbjct: 353 QPPFKAIVFFPFTNMVAMAGEL 374
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 488 (176.8 bits), Expect = 3.0e-43, P = 3.0e-43
Identities = 128/368 (34%), Positives = 203/368 (55%)
Query: 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472
T+ T +Q L G D++ +QTGSGKTLAY +P I + +P I R +G A+++
Sbjct: 258 TKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGN-QPPIIRGEGPIALVL 316
Query: 473 LPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
PTRELA Q + + LCK I + + GG + + +G+ +++ATPGRL+
Sbjct: 317 APTRELAQQIQSVVRDYGHLCKPE--IRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLI 374
Query: 530 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 589
D ++ T + +LVLDEADR+LD G+E I + +E ++ P Q ++ SAT
Sbjct: 375 DFLENRNT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR---PDRQVVMWSATWPKE 430
Query: 590 VQRLAGMTLQNPIQID--AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILG 647
VQ LAG L + IQI+ + + + HN + I +++ P+ RLV L + I
Sbjct: 431 VQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEK------PQ-RLVCLLNEI-S 482
Query: 648 KCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFR 707
+N + + +K++VF+ T+ + ++L + E +HG +Q+ER V K FR
Sbjct: 483 PIKN-SGNNGNKIIVFVETKIKVE---DILQIIRAEGYNATSIHGDKTQNERDSVLKDFR 538
Query: 708 SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767
+ KS +LI TDVA+RGLD+ + +++ Y P+SS +YVHR+GRT R G++ F P
Sbjct: 539 NGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPD 598
Query: 768 EVKLVEEL 775
K EL
Sbjct: 599 NAKQAREL 606
Score = 264 (98.0 bits), Expect = 7.6e-19, P = 7.6e-19
Identities = 77/242 (31%), Positives = 129/242 (53%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
T+ T +Q L G D++ +QTGSGKTLAY +P I + +P I R +G A+++
Sbjct: 258 TKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGN-QPPIIRGEGPIALVL 316
Query: 64 LPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
PTRELA Q + + LCK I + + GG + + +G+ +++ATPGRL+
Sbjct: 317 APTRELAQQIQSVVRDYGHLCKPE--IRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLI 374
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
D ++ T + +LVLDEADR+LD G+E I + +E ++ P Q ++ SAT
Sbjct: 375 DFLENRNT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR---PDRQVVMWSAT---- 426
Query: 181 TCWCKHTETLKFSKV-EHLVLDEADRILDQGYERDIAEFLEILKK-QKPQFQSVLLSATL 238
W K + L + +++ ++ L + +I + +EI + +KPQ + V L +
Sbjct: 427 --WPKEVQALAGDFLNDYIQINIGSMNLSANH--NIRQIVEICTEIEKPQ-RLVCLLNEI 481
Query: 239 TP 240
+P
Sbjct: 482 SP 483
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 308 (113.5 bits), Expect = 3.1e-43, Sum P(2) = 3.1e-43
Identities = 77/208 (37%), Positives = 121/208 (58%)
Query: 418 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM----RPKISRKD--GIYAVI 471
+Q ++ L+G DV+ +QTGSGKT A+AIPI+Q L E PK R+ +A +
Sbjct: 35 IQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACV 94
Query: 472 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 531
+ PTRELA+Q E F L + + + L GG + + K ++VATPGRL DH
Sbjct: 95 LSPTRELAIQIAEQFEALGADIS-LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDH 153
Query: 532 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQ 591
T+ +++LVLDEADR+L++ +E+ + + LE + ++ F L SAT+T V+
Sbjct: 154 MSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTF---LFSATMTKKVR 210
Query: 592 RLAGMTLQNPIQIDAADSTDIHNTTDSL 619
+L L+NP++I+AA ++T D+L
Sbjct: 211 KLQRACLRNPVKIEAASK---YSTVDTL 235
Score = 262 (97.3 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 66/176 (37%), Positives = 101/176 (57%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM----RPKISRKD--GIYAVI 62
+Q ++ L+G DV+ +QTGSGKT A+AIPI+Q L E PK R+ +A +
Sbjct: 35 IQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACV 94
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
+ PTRELA+Q E F L + + + L GG + + K ++VATPGRL DH
Sbjct: 95 LSPTRELAIQIAEQFEALGADIS-LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDH 153
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
T+ +++LVLDEADR+L++ +E+ + + LE + ++ F L SAT+T
Sbjct: 154 MSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTF---LFSATMT 206
Score = 217 (81.4 bits), Expect = 3.1e-43, Sum P(2) = 3.1e-43
Identities = 60/184 (32%), Positives = 98/184 (53%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
D+LKQ + K + L +IL +E ES ++F T D T L+ VL
Sbjct: 233 DTLKQQYRFVAAKYKDCYLV-YIL------SEMPESTSMIFTRTCD----GTRFLALVL- 280
Query: 683 ENIAF--FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
++ F + G M+QS+R F++ + +L+CTDVA+RGLD+P VD ++ Y P++
Sbjct: 281 RSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTN 340
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKL---VEELQNRRIR---IEEIKLKDCLQNL 794
S DY+HRVGRTAR G G + + E++ +E+L +++ EE ++ L+ +
Sbjct: 341 SKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERV 400
Query: 795 LSVK 798
K
Sbjct: 401 AEAK 404
Score = 150 (57.9 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 178 TPATCWCKHTETLKFS--KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLS 235
TP W ++T FS +++LVLDEADR+L++ +E+ + + LE + ++ F L S
Sbjct: 146 TPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTF---LFS 202
Query: 236 ATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSL 271
AT+T V++L L+NP++I+AA ++T D+L
Sbjct: 203 ATMTKKVRKLQRACLRNPVKIEAASK---YSTVDTL 235
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 484 (175.4 bits), Expect = 5.5e-43, P = 5.5e-43
Identities = 127/414 (30%), Positives = 217/414 (52%)
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465
+ E ++ +T +Q ++ I+ G DV+ S+TGSGKT++Y +P++++++ RP +
Sbjct: 270 ITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHET 329
Query: 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATP 525
G +I+ PTRELALQ E TK ++ T I TGG +MK + +++G I+VATP
Sbjct: 330 GPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATP 389
Query: 526 GRLLD--HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
GR +D + L ++ +V+DEADR+ D G+E I + I+K +P Q +L S
Sbjct: 390 GRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQ---IMKTVRPDKQCVLFS 446
Query: 584 ATLTPAVQRLAGMTLQNPIQIDAADSTDIH-NTTDSLVIPDSLKQHFIVTPPKLRLVALA 642
AT ++ A L +PI I ++ N I S + F ++L+
Sbjct: 447 ATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKF---DNLVQLIHER 503
Query: 643 SFILGKCQNVN-------EDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMS 695
S + Q+ N E+ ++K ++F+++Q++ D+ ++ L L I +H
Sbjct: 504 SEFFDEVQSENDGQSSDVEEVDAKAIIFVSSQNICDFISKKL---LNAGIVTCAIHAGKP 560
Query: 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755
ER + F+ K+ +L+CT+V +RGL++P V ++ Y A + YVH GRTAR
Sbjct: 561 YQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGS 620
Query: 756 HEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQ--NL--LSVKMEGDLSR 805
G+++ L+ E+ L ++ +R EEIK D LQ L +S K E + +
Sbjct: 621 RSGTAITLLLHDELSGAYIL-SKAMRDEEIKALDPLQAKELQEMSAKFESGMKK 673
Score = 297 (109.6 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 65/178 (36%), Positives = 106/178 (59%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
++ +T +Q ++ I+ G DV+ S+TGSGKT++Y +P++++++ RP + G
Sbjct: 274 LHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMG 333
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELALQ E TK ++ T I TGG +MK + +++G I+VATPGR +
Sbjct: 334 LILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFI 393
Query: 121 D--HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
D + L ++ +V+DEADR+ D G+E I + I+K +P Q +L SAT
Sbjct: 394 DILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQ---IMKTVRPDKQCVLFSAT 448
Score = 41 (19.5 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 653 NEDEESKMLVFMATQDMADYHT--ELLSTVLGENI 685
NE++E K+ + + QD D ELL + E +
Sbjct: 802 NENDEPKLYLLIEGQDEKDIQLSIELLEQKVKEGV 836
Score = 37 (18.1 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 305 NEDEESKMLVFMATQDMAD 323
NE++E K+ + + QD D
Sbjct: 802 NENDEPKLYLLIEGQDEKD 820
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 462 (167.7 bits), Expect = 6.9e-43, P = 6.9e-43
Identities = 123/398 (30%), Positives = 213/398 (53%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
+ M I T +Q I IL G D + ++TGSGKT+A+A P++ + E P GI
Sbjct: 17 DAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQWSE-DPF-----GI 70
Query: 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 527
+ +I+ PTRELALQ E F L + I + + GGE + +++ ++ATPGR
Sbjct: 71 FGLILTPTRELALQIAEQFAALGANMN-IKVAVVVGGEDFVQQTLALQRKPHFVIATPGR 129
Query: 528 LLDHCKHT--ETLK-FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584
L DH ++ ET+ +V++LVLDEADR+L + D+ ++L + Q++L +A
Sbjct: 130 LADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSDKR-QTLLFTA 188
Query: 585 TLTPAVQRLAGMTLQNPIQIDAADSTDIHN--TTDSLVIPDSLKQHFIVTPPKLRLVALA 642
T+T AV+ L + P +H T D + IP +L+ ++ P ++ L
Sbjct: 189 TITDAVRALK----EKP-PTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYVKEAYLN 243
Query: 643 SFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702
S + ++ + ++S ++F+ A+ +L L +A LH M QSERT
Sbjct: 244 SIL-----HLEQFKDSTAVIFVNRTTTAEVLRRMLRK-LDFRVA--SLHSEMPQSERTNS 295
Query: 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762
F++ + +LI TDVA+RGLD+P V+ ++ + P+ D++HRVGRTAR G +G ++
Sbjct: 296 LHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVS 355
Query: 763 FLIPSEV---KLVEELQNRRIRI-EEIKLKDCLQNLLS 796
+ ++ + +EE N+++ + E++ + ++ LS
Sbjct: 356 IIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKESLS 393
Score = 255 (94.8 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 66/183 (36%), Positives = 103/183 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M I T +Q I IL G D + ++TGSGKT+A+A P++ + E P GI+
Sbjct: 19 MKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQWSE-DPF-----GIFG 72
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELALQ E F L + I + + GGE + +++ ++ATPGRL
Sbjct: 73 LILTPTRELALQIAEQFAALGANMN-IKVAVVVGGEDFVQQTLALQRKPHFVIATPGRLA 131
Query: 121 DHCKHT--ETLK-FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
DH ++ ET+ +V++LVLDEADR+L + D+ ++L + Q++L +AT+
Sbjct: 132 DHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSDKR-QTLLFTATI 190
Query: 178 TPA 180
T A
Sbjct: 191 TDA 193
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 326 (119.8 bits), Expect = 9.4e-26, P = 9.4e-26
Identities = 78/223 (34%), Positives = 128/223 (57%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
S+++ P +K M Q T +Q+ I L G D+ + TG+GKT A+A+P+
Sbjct: 185 SFQDMNLSRPLLKAIT--AMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPV 242
Query: 451 IQKLQEMRPKISRKDGIYAVIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+++L +P R+ + V++L PTREL +Q + TK F I GG +KS
Sbjct: 243 LERLI-YKP---RQAAVTRVLVLVPTRELGIQVHSV-TKQLAQFCSITTCLAVGGLDVKS 297
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
++A +R IL+ATPGRL+DH + + S +E L+LDEADR+LD+ +E + E + +
Sbjct: 298 QEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 357
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDI 612
+ Q++L SAT+T V+ LA ++L+NP++I +TD+
Sbjct: 358 CSHHR---QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 397
Score = 278 (102.9 bits), Expect = 7.5e-43, Sum P(2) = 7.5e-43
Identities = 66/179 (36%), Positives = 104/179 (58%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M Q T +Q+ I L G D+ + TG+GKT A+A+P++++L +P R+ +
Sbjct: 202 MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-YKP---RQAAVTR 257
Query: 61 VIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
V++L PTREL +Q + TK F I GG +KS++A +R IL+ATPGRL
Sbjct: 258 VLVLVPTRELGIQVHSV-TKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRL 316
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+DH + + S +E L+LDEADR+LD+ +E + E + + + Q++L SAT+T
Sbjct: 317 IDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR---QTMLFSATMT 372
Score = 263 (97.6 bits), Expect = 7.5e-43, Sum P(2) = 7.5e-43
Identities = 83/281 (29%), Positives = 144/281 (51%)
Query: 554 ILDQGYERDIAEFLE-----ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608
ILD+ +R + E+ E I++ Q++L SAT+T V+ LA ++L+NP++I
Sbjct: 335 ILDEA-DRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNS 393
Query: 609 STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 668
+TD V P L+Q FI P R + + D +++F T+
Sbjct: 394 NTD--------VAP-FLRQEFIRIRPN-REGDREAIVAALLMRTFTDH---VMLFTQTKK 440
Query: 669 MADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL 728
A + +L +LG + +LHG++SQ++R E + F+ + +L+ TDVAARGLD+
Sbjct: 441 QA-HRMHILLGLLGLQVG--ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEG 497
Query: 729 VDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLK 788
V ++ +T P++ YVHRVGRTAR G G S+ + E K+++E+ + +K +
Sbjct: 498 VKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIV--KAAKAPVKAR 555
Query: 789 DCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQ 829
Q+++ +K + +L + LQ+ E +QQ
Sbjct: 556 ILPQDVI-LKFRDKIEKLE----KDVYAVLQLEAEEKEMQQ 591
Score = 137 (53.3 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252
S +E L+LDEADR+LD+ +E + E + + + Q++L SAT+T V+ LA ++L+N
Sbjct: 329 SSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR---QTMLFSATMTDEVKDLASVSLKN 385
Query: 253 PIQIDAADSTDI 264
P++I +TD+
Sbjct: 386 PVRIFVNSNTDV 397
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 335 (123.0 bits), Expect = 1.0e-26, P = 1.0e-26
Identities = 78/241 (32%), Positives = 142/241 (58%)
Query: 377 RRLKPVSEALFAPTS-YEEFPGIHPF-MKKNLNEG---MNITQVTTVQQLSIQPILDGGD 431
R++ +E F S Y+E H + + L + M Q T +Q+ + L G D
Sbjct: 181 RKMADTTEGFFEDASQYDENLTFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKD 240
Query: 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491
+ + TG+GKT A+ +P++++L +P+ ++ + ++++PTREL +Q + +L +
Sbjct: 241 ICACAATGTGKTAAFMLPVLERLI-YKPRETQVTRV--LVLVPTRELGIQVHTVARQLAQ 297
Query: 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551
FT I GG +KS++A +R G +L+ATPGRL+DH +T + + S++E L+LDEA
Sbjct: 298 -FTTISTCLAVGGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEA 356
Query: 552 DRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTD 611
DR+LD+ +E + E + + Q+ Q++L SAT++ V+ LA ++L+ P++I +TD
Sbjct: 357 DRMLDEYFEEQMKEIIRMCAYQR---QTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTD 413
Query: 612 I 612
+
Sbjct: 414 V 414
Score = 287 (106.1 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
Identities = 62/178 (34%), Positives = 111/178 (62%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M Q T +Q+ + L G D+ + TG+GKT A+ +P++++L +P+ ++ +
Sbjct: 219 MGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLI-YKPRETQVTRV-- 275
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++++PTREL +Q + +L + FT I GG +KS++A +R G +L+ATPGRL+
Sbjct: 276 LVLVPTRELGIQVHTVARQLAQ-FTTISTCLAVGGLDLKSQEAALRAGPDVLIATPGRLI 334
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH +T + + S++E L+LDEADR+LD+ +E + E + + Q+ Q++L SAT++
Sbjct: 335 DHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQR---QTMLFSATMS 389
Score = 252 (93.8 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
Identities = 81/265 (30%), Positives = 147/265 (55%)
Query: 554 ILDQGYERDIAEFLE-----ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608
ILD+ +R + E+ E I++ Q Q++L SAT++ V+ LA ++L+ P++I
Sbjct: 352 ILDEA-DRMLDEYFEEQMKEIIRMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNS 410
Query: 609 STDIHNTTDSLVIPDSLKQHFI-VTPPKL--RLVALASFILGKCQNVNEDEESKMLVFMA 665
+TD V P L+Q F+ + P K R +A+ + Q+ +++F
Sbjct: 411 NTD--------VAP-YLRQEFVRIRPNKEGDREAIVAALLTRTFQD-------HVMLFTQ 454
Query: 666 TQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLD 725
T+ A + +L ++G + +LHG++SQ++R E + F+ + +L+ TDVAARGLD
Sbjct: 455 TKKQA-HRMHILLGLMGLKVG--ELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLD 511
Query: 726 LPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-----RI 780
+ V ++ +T P++ YVHRVGRTAR G G S+ + +E K+++E+ + +
Sbjct: 512 IEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKEIVKKAKFPVKA 571
Query: 781 RI--EEIKLKDCLQNLLSVKMEGDL 803
R+ +E+ LK ++L+ K+E D+
Sbjct: 572 RVIPQEVILK--FRDLIE-KLEKDV 593
Score = 138 (53.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 28/79 (35%), Positives = 53/79 (67%)
Query: 186 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRL 245
+T + + S++E L+LDEADR+LD+ +E + E + + Q+ Q++L SAT++ V+ L
Sbjct: 339 NTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQR---QTMLFSATMSEEVKDL 395
Query: 246 AGMTLQNPIQIDAADSTDI 264
A ++L+ P++I +TD+
Sbjct: 396 ASVSLKQPVRIFVNSNTDV 414
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 311 (114.5 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 78/230 (33%), Positives = 127/230 (55%)
Query: 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
+P K + +G + T +Q+ +I ILDG DV+ ++TGSGKT + +P+ ++L+
Sbjct: 104 YPVFKGIMKKGYKVP--TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAR- 160
Query: 459 PKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGI 518
S + G A+I+ PTRELALQT++ FTK FT + + + GG+KM+ + A + +
Sbjct: 161 ---SAQTGARALILSPTRELALQTMK-FTKELGKFTGLKTALILGGDKMEDQFAALHENP 216
Query: 519 SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQ 578
I++ATPGRL+ H LK VE++V DEADR+ + G+ + E I+ + Q
Sbjct: 217 DIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQE---IIGRLPGGHQ 272
Query: 579 SILLSATLTPAVQRLAGMTLQNP--IQIDAADSTDIHNTTDSLVIPDSLK 626
++L SATL + A L P I++D + T L++ + K
Sbjct: 273 TVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTK 322
Score = 291 (107.5 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 67/171 (39%), Positives = 105/171 (61%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ +I ILDG DV+ ++TGSGKT + +P+ ++L+ S + G A+I+ PT
Sbjct: 119 TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAR----SAQTGARALILSPT 174
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQT++ FTK FT + + + GG+KM+ + A + + I++ATPGRL+ H
Sbjct: 175 RELALQTMK-FTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVE 232
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LK VE++V DEADR+ + G+ + E I+ + Q++L SATL
Sbjct: 233 MNLKLQSVEYVVFDEADRLFEMGFAEQLQE---IIGRLPGGHQTVLFSATL 280
Score = 228 (85.3 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 68/225 (30%), Positives = 117/225 (52%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ LK F++ +R A+ +L QNV ++ + +VF+AT+ A+Y TELL +G
Sbjct: 308 EQLKTSFLL----VREDTKAAVLLYLLQNVVRPQD-QTVVFVATKHHAEYLTELL---MG 359
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+ ++ ++ ++ Q+ R F K LI TD+AARGLD+PL+D ++ Y+ P+
Sbjct: 360 QGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGK 419
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLS--VKME 800
++HRVGR AR G G++ + P EV + +L R + + C + ++ V +
Sbjct: 420 LFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLA-RPCEEPSVADAVGRD 478
Query: 801 GDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVR 845
G L R+ V+ ++LQ + A L + LH A +VR
Sbjct: 479 GVLGRVPQSVVDDEDSSLQTAM-GASLDLQGLHRVANNAQQQYVR 522
Score = 101 (40.6 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 50/189 (26%), Positives = 85/189 (44%)
Query: 96 EKMKSEKARIRKGISILVATPGR--LLDHCKHTETL-KFSKVEHLVLDEADRILDQGYER 152
E++K+ A+ G L+ +P R L K T+ L KF+ ++ ++ D++ DQ
Sbjct: 155 ERLKARSAQT--GARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQ---- 208
Query: 153 DIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTE-TLKFSKVEHLVLDEADRILDQGY 211
F + + P I+++ TP E LK VE++V DEADR+ + G+
Sbjct: 209 ----FAAL--HENPD---IIIA---TPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGF 256
Query: 212 ERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNP--IQIDAADSTDIHNTTD 269
+ E I+ + Q+VL SATL + A L P I++D + T
Sbjct: 257 AEQLQE---IIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTS 313
Query: 270 SLVIPDSLK 278
L++ + K
Sbjct: 314 FLLVREDTK 322
>TAIR|locus:2038431 [details] [associations]
symbol:AT1G63250 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 EMBL:AC022355 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 UniGene:At.52694 ProtClustDB:CLSN2713541
IPI:IPI00538833 PIR:C96658 RefSeq:NP_176514.1 UniGene:At.36158
ProteinModelPortal:Q9C8S9 SMR:Q9C8S9 PaxDb:Q9C8S9 PRIDE:Q9C8S9
EnsemblPlants:AT1G63250.1 GeneID:842631 KEGG:ath:AT1G63250
GeneFarm:1027 TAIR:At1g63250 InParanoid:Q9C8S9 OMA:TSSRAHI
PhylomeDB:Q9C8S9 Genevestigator:Q9C8S9 GermOnline:AT1G63250
Uniprot:Q9C8S9
Length = 798
Score = 479 (173.7 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 136/463 (29%), Positives = 249/463 (53%)
Query: 371 IPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG 430
+ NV + +P +++++ ++E I P K L+ I ++T VQ ++ LDG
Sbjct: 310 VDNVMEEKQEP-HDSIYSAKRFDE-SCISPLTLKALSAS-GILKMTRVQDATLSECLDGK 366
Query: 431 DVLVRSQTGSGKTLAYAIPIIQK-LQEMRPK--ISRKDGIYAVIILPTRELALQTLEIFT 487
D LV+++TG+GK++A+ +P I+ L+ M +++ I+A+I+ PTRELA Q
Sbjct: 367 DALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGK 426
Query: 488 KLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTE--TLKFSKVE 544
L K I L GG + K ++ R+ + IL+ATPGRLLDH ++ T + ++
Sbjct: 427 ALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALK 486
Query: 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
++DEAD +LD G+ RD+ + ++ L +Q+ QS+L SAT+ V+R++ + L+
Sbjct: 487 LFIVDEADLLLDLGFRRDVEKIIDCLPRQR---QSLLFSATIPKEVRRVSQLVLKRDHSY 543
Query: 605 DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFM 664
D+ + + D ++Q IV P + L +L +++N + K++VF
Sbjct: 544 --IDTIGL----GCVETHDKVRQSCIVAPHESHF-HLVPHLLK--EHINNTPDYKIIVFC 594
Query: 665 ATQDMADYHTELLSTVLGE-NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARG 723
+T M T L+ T+L E + ++H Q RT V F+ +L+ +DV+ARG
Sbjct: 595 ST-GMV---TSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARG 650
Query: 724 LDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIE 783
++ P V ++Q PS Y+HR+GRT R G G LL + P E ++EL++ + +E
Sbjct: 651 MNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKD--LPLE 708
Query: 784 EIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAV 826
I D L +++ +++ ++++ D +++ AA + + ++V
Sbjct: 709 PIPAPD-LDSIVKHQVDQSMAKI-DTSIKEAAYHAWLGYYNSV 749
Score = 275 (101.9 bits), Expect = 3.6e-20, P = 3.6e-20
Identities = 66/181 (36%), Positives = 109/181 (60%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK-LQEMRPK--ISRKDGIY 59
I ++T VQ ++ LDG D LV+++TG+GK++A+ +P I+ L+ M +++ I+
Sbjct: 348 ILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIF 407
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGR 118
A+I+ PTRELA Q L K I L GG + K ++ R+ + IL+ATPGR
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGR 467
Query: 119 LLDHCKHTE--TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
LLDH ++ T + ++ ++DEAD +LD G+ RD+ + ++ L +Q+ QS+L SAT
Sbjct: 468 LLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQR---QSLLFSAT 524
Query: 177 L 177
+
Sbjct: 525 I 525
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 325 (119.5 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 76/222 (34%), Positives = 128/222 (57%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
S+++ P +K M Q T +Q+ I L G D+ + TG+GKT A+A+P+
Sbjct: 188 SFQDMNLSRPLLKAIT--AMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPV 245
Query: 451 IQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510
+++L +P+ S + ++++PTREL +Q + TK F I GG +KS+
Sbjct: 246 LERLI-YKPRQSPVTRV--LVLVPTRELGIQVHSV-TKQLAQFCNITTCLAVGGLDVKSQ 301
Query: 511 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570
+A +R IL+ATPGRL+DH + + S +E L+LDEADR+LD+ +E + E + +
Sbjct: 302 EAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 361
Query: 571 KKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDI 612
+ Q++L SAT+T V+ LA ++L+NP++I +TD+
Sbjct: 362 SHHR---QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 400
Score = 277 (102.6 bits), Expect = 2.1e-42, Sum P(2) = 2.1e-42
Identities = 64/178 (35%), Positives = 104/178 (58%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M Q T +Q+ I L G D+ + TG+GKT A+A+P++++L +P+ S +
Sbjct: 205 MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-YKPRQSPVTRV-- 261
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++++PTREL +Q + TK F I GG +KS++A +R IL+ATPGRL+
Sbjct: 262 LVLVPTRELGIQVHSV-TKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLI 320
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH + + S +E L+LDEADR+LD+ +E + E + + + Q++L SAT+T
Sbjct: 321 DHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR---QTMLFSATMT 375
Score = 260 (96.6 bits), Expect = 2.1e-42, Sum P(2) = 2.1e-42
Identities = 82/290 (28%), Positives = 146/290 (50%)
Query: 554 ILDQGYERDIAEFLE-----ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608
ILD+ +R + E+ E I++ Q++L SAT+T V+ LA ++L+NP++I
Sbjct: 338 ILDEA-DRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNS 396
Query: 609 STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 668
+TD V P L+Q F+ P R + + D +++F T+
Sbjct: 397 NTD--------VAP-FLRQEFVRIRPN-REGDREAIVAALLTRTFTDH---VMLFTQTKK 443
Query: 669 MADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL 728
A + +L ++G + +LHG++SQ++R E + F+ + +L+ TDVAARGLD+
Sbjct: 444 QA-HRMHILLGLMGLQVG--ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEG 500
Query: 729 VDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLK 788
V ++ +T P++ YVHRVGRTAR G G S+ + E K+++E+ + +K +
Sbjct: 501 VKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIV--KAAKAPVKAR 558
Query: 789 DCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACK 838
Q+++ +K + ++ + LQ+ E LQQ + K
Sbjct: 559 ILPQDVI-LKFRDKIEKME----KDVYAVLQLEAEEKELQQSEAQINTAK 603
Score = 137 (53.3 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252
S +E L+LDEADR+LD+ +E + E + + + Q++L SAT+T V+ LA ++L+N
Sbjct: 332 SSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR---QTMLFSATMTDEVKDLASVSLKN 388
Query: 253 PIQIDAADSTDI 264
P++I +TD+
Sbjct: 389 PVRIFVNSNTDV 400
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 325 (119.5 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 76/222 (34%), Positives = 128/222 (57%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
S+++ P +K M Q T +Q+ I L G D+ + TG+GKT A+A+P+
Sbjct: 209 SFQDMNLSRPLLKAIT--AMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPV 266
Query: 451 IQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510
+++L +P+ S + ++++PTREL +Q + TK F I GG +KS+
Sbjct: 267 LERLI-YKPRQSPVTRV--LVLVPTRELGIQVHSV-TKQLAQFCNITTCLAVGGLDVKSQ 322
Query: 511 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570
+A +R IL+ATPGRL+DH + + S +E L+LDEADR+LD+ +E + E + +
Sbjct: 323 EAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMC 382
Query: 571 KKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDI 612
+ Q++L SAT+T V+ LA ++L+NP++I +TD+
Sbjct: 383 SHHR---QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDV 421
Score = 277 (102.6 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 64/178 (35%), Positives = 104/178 (58%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M Q T +Q+ I L G D+ + TG+GKT A+A+P++++L +P+ S +
Sbjct: 226 MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-YKPRQSPVTRV-- 282
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++++PTREL +Q + TK F I GG +KS++A +R IL+ATPGRL+
Sbjct: 283 LVLVPTRELGIQVHSV-TKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLI 341
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH + + S +E L+LDEADR+LD+ +E + E + + + Q++L SAT+T
Sbjct: 342 DHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR---QTMLFSATMT 396
Score = 260 (96.6 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 82/290 (28%), Positives = 146/290 (50%)
Query: 554 ILDQGYERDIAEFLE-----ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608
ILD+ +R + E+ E I++ Q++L SAT+T V+ LA ++L+NP++I
Sbjct: 359 ILDEA-DRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNS 417
Query: 609 STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 668
+TD V P L+Q F+ P R + + D +++F T+
Sbjct: 418 NTD--------VAP-FLRQEFVRIRPN-REGDREAIVAALLTRTFTDH---VMLFTQTKK 464
Query: 669 MADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPL 728
A + +L ++G + +LHG++SQ++R E + F+ + +L+ TDVAARGLD+
Sbjct: 465 QA-HRMHILLGLMGLQVG--ELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEG 521
Query: 729 VDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLK 788
V ++ +T P++ YVHRVGRTAR G G S+ + E K+++E+ + +K +
Sbjct: 522 VKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIV--KAAKAPVKAR 579
Query: 789 DCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACK 838
Q+++ +K + ++ + LQ+ E LQQ + K
Sbjct: 580 ILPQDVI-LKFRDKIEKME----KDVYAVLQLEAEEKELQQSEAQINTAK 624
Score = 137 (53.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252
S +E L+LDEADR+LD+ +E + E + + + Q++L SAT+T V+ LA ++L+N
Sbjct: 353 SSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR---QTMLFSATMTDEVKDLASVSLKN 409
Query: 253 PIQIDAADSTDI 264
P++I +TD+
Sbjct: 410 PVRIFVNSNTDV 421
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 480 (174.0 bits), Expect = 3.4e-42, P = 3.4e-42
Identities = 134/446 (30%), Positives = 221/446 (49%)
Query: 342 NIDPDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPF 401
N D DN + K + + S F++ P N + S+ ++
Sbjct: 183 NADADNKKSKKSNKKEEIESSEKFESFPMDENNEQEE-ETTSKKKKKTGGFQSMDLTKNL 241
Query: 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI 461
+K L +G N+ T +Q+ SI ILDG D++ ++TGSGKT A+ IP+IQKL + +
Sbjct: 242 LKAILKKGFNVP--TPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTV 299
Query: 462 SRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISIL 521
G+ AVI+ PTRELA+QT ++ + T + + GG+ M+ + + + I+
Sbjct: 300 ----GVRAVILSPTRELAIQTFKVVKDFSQG-TQLRTILIVGGDSMEDQFTDLARNPDII 354
Query: 522 VATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSIL 581
+ATPGRL+ H T + SKV+++V DEADR+ + G+ + E L L + + Q++L
Sbjct: 355 IATPGRLMHHLLETG-MSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENR---QTLL 410
Query: 582 LSATLTPAVQRLAGMTLQNPIQIDAADSTDI-HNTT---------DSLVIPDSLKQHFIV 631
SATL + L NP I+ T I N + + L + L + I
Sbjct: 411 FSATLPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFTLRHEEKLGVLLFLLKDIIY 470
Query: 632 TPPKLRLVALASFILGKCQ-NVNEDEESKMLVFMATQDMADYHTELLSTVLGE-NIAFFK 689
P+L + + N + ++S ++F++T+ YH E + +L IA
Sbjct: 471 KKPQLPTTETTTTTTTNNESNQQQQKKSSTIIFVSTK----YHVEFIHILLERAGIASTY 526
Query: 690 LHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVG 749
+HG + R FRS + GV++ TD+AARG+D+PL+D ++ + P ++HRVG
Sbjct: 527 IHGYLDPVARKINLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVG 586
Query: 750 RTARVGHEGSSLLFLIPSEVKLVEEL 775
R AR G G + + P EV + +L
Sbjct: 587 RVARAGRSGIAYSLVSPDEVPYMIDL 612
Score = 293 (108.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 66/171 (38%), Positives = 104/171 (60%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ SI ILDG D++ ++TGSGKT A+ IP+IQKL + + G+ AVI+ PT
Sbjct: 254 TPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTV----GVRAVILSPT 309
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA+QT ++ + T + + GG+ M+ + + + I++ATPGRL+ H T
Sbjct: 310 RELAIQTFKVVKDFSQG-TQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLLET 368
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
+ SKV+++V DEADR+ + G+ + E L L + + Q++L SATL
Sbjct: 369 G-MSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENR---QTLLFSATL 415
Score = 41 (19.5 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 299 GKCQNVNEDEESK 311
G+ Q V EDE SK
Sbjct: 980 GRIQRVGEDENSK 992
Score = 41 (19.5 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 647 GKCQNVNEDEESK 659
G+ Q V EDE SK
Sbjct: 980 GRIQRVGEDENSK 992
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 302 (111.4 bits), Expect = 4.2e-23, P = 4.2e-23
Identities = 80/240 (33%), Positives = 131/240 (54%)
Query: 380 KPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTG 439
+P S+ S++ P ++ + G + T +Q +I L G DV+ + TG
Sbjct: 245 EPKSDTNKGNASFQSMSLSRPILRGLTSVGF--AKPTPIQSKTIPIALMGKDVVGGAVTG 302
Query: 440 SGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPS 499
SGKT A+ +PI+++L RPK + VI+ PTRELA+Q + TKL S T I
Sbjct: 303 SGKTAAFVVPILERLL-YRPKKVPTSRV--VILAPTRELAIQCHAVATKLA-SHTDIKFC 358
Query: 500 WLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGY 559
GG +K +++ +R +++ATPGR +DH +++ + VE LVLDEADR+L+ G+
Sbjct: 359 LAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGF 418
Query: 560 ERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ--IDAADSTDIHNTTD 617
++ E L L K + Q++L SAT+T +V L + L P++ +D+ T + T +
Sbjct: 419 ADELNEILTTLPKSR---QTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQE 475
Score = 276 (102.2 bits), Expect = 7.8e-42, Sum P(2) = 7.8e-42
Identities = 68/172 (39%), Positives = 103/172 (59%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I L G DV+ + TGSGKT A+ +PI+++L RPK + VI+ PT
Sbjct: 279 TPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLL-YRPKKVPTSRV--VILAPT 335
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA+Q + TKL S T I GG +K +++ +R +++ATPGR +DH +++
Sbjct: 336 RELAIQCHAVATKLA-SHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNS 394
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ VE LVLDEADR+L+ G+ ++ E L L K + Q++L SAT+T
Sbjct: 395 ASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSR---QTMLFSATMT 443
Score = 256 (95.2 bits), Expect = 7.8e-42, Sum P(2) = 7.8e-42
Identities = 72/219 (32%), Positives = 118/219 (53%)
Query: 556 DQGYERDIAEFL-EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHN 614
D+ E A+ L EIL Q++L SAT+T +V L + L P+++ D
Sbjct: 411 DRMLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRL----MVDSQK 466
Query: 615 TTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 674
T V+ +L Q F+ P R +++ C+N+ + ++++F + +A +H
Sbjct: 467 KT---VV--TLTQEFVRLRPG-REEKRMGYLVYLCKNLYTE---RVIIFFRQKKIA-HHA 516
Query: 675 ELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734
++ +LG + A +LHGSMSQ +R + + FR K L+ TD+A+RGLD+ VD ++
Sbjct: 517 RIIFGLLGLSCA--ELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVIN 574
Query: 735 YTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVE 773
Y AP S YVHRVGRTAR G G+++ + K+V+
Sbjct: 575 YEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVK 613
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 298 (110.0 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 77/233 (33%), Positives = 131/233 (56%)
Query: 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYA 447
AP +++E I + E + T +QQ +I +L+ DV+ +QTGSGKT A+A
Sbjct: 44 APKTFKELGVIDELCEAC--EKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFA 101
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507
+P+IQ+L P +AV++ PTRELA Q E F + S + + GG M
Sbjct: 102 LPVIQELWN-NPS-----PFFAVVLAPTRELAYQISEQFEAIGGSIG-VRSVVIVGGMDM 154
Query: 508 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 567
++ + K +LV TPGRL+DH ++T+ +++L++DEADR+LD + I + L
Sbjct: 155 VTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKIL 214
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620
+I+ ++ +++L SAT+T V++L +L P+++ A S +T D+L+
Sbjct: 215 KIIPHER---RTLLFSATMTSKVEKLQRASLHQPVRV-AVSSK--FSTVDTLI 261
Score = 264 (98.0 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 63/172 (36%), Positives = 103/172 (59%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +QQ +I +L+ DV+ +QTGSGKT A+A+P+IQ+L P +AV++ PT
Sbjct: 70 TPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWN-NPS-----PFFAVVLAPT 123
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E F + S + + GG M ++ + K +LV TPGRL+DH ++T
Sbjct: 124 RELAYQISEQFEAIGGSIG-VRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENT 182
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ +++L++DEADR+LD + I + L+I+ ++ +++L SAT+T
Sbjct: 183 KGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHER---RTLLFSATMT 231
Score = 213 (80.0 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 48/110 (43%), Positives = 63/110 (57%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
VNE + +++F T + LL T LG + LHG +SQS R F+S
Sbjct: 280 VNELAGNSIIIFARTVNDTQRLAILLRT-LG--FSAIPLHGQLSQSNRLGALNKFKSGAR 336
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL 761
L+ TDVAARGLD+PLVD ++ Y P+ S Y+HRVGRTAR G G S+
Sbjct: 337 STLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSI 386
Score = 113 (44.8 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 30/90 (33%), Positives = 55/90 (61%)
Query: 186 HTETLK-FS--KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAV 242
H E K FS +++L++DEADR+LD + I + L+I+ ++ +++L SAT+T V
Sbjct: 178 HLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHER---RTLLFSATMTSKV 234
Query: 243 QRLAGMTLQNPIQIDAADSTDIHNTTDSLV 272
++L +L P+++ A S +T D+L+
Sbjct: 235 EKLQRASLHQPVRV-AVSSK--FSTVDTLI 261
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 343 (125.8 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 92/277 (33%), Positives = 151/277 (54%)
Query: 377 RRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRS 436
R+LK + E PT +EE P +K + + +Q T +Q +I L+G D+L +
Sbjct: 179 RKLKKIVEEEL-PT-FEELHLSRPLLKAV--QKLGFSQPTPIQAKAIPLALNGKDILASA 234
Query: 437 QTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWI 496
TGSGKT A+ +P++++L R R I +I+LPTRELALQ + L + F+ I
Sbjct: 235 STGSGKTAAFLLPVLERLL-FRDSEYR--AIRVLILLPTRELALQCQSVMENLAQ-FSNI 290
Query: 497 VPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD 556
+ GG K+++ +RK +++ATPGRL+DH + + +E L+LDEADR+LD
Sbjct: 291 TSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLD 350
Query: 557 QGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTT 616
G++ +I + +E + Q++L SATL V+ LA ++LQ PI++
Sbjct: 351 MGFKDEINKIVESCPTNR---QTMLFSATLNDEVKTLAKLSLQQPIRVQV---------- 397
Query: 617 DSLV-IPDSLKQHFIVTPPKLRLVALASFILGKCQNV 652
D+L+ + +L+Q F+ P+ L + +L C V
Sbjct: 398 DALMQVTSTLEQEFVKIKPQ-HLSDRPAILLSLCTRV 433
Score = 286 (105.7 bits), Expect = 2.9e-41, Sum P(2) = 2.9e-41
Identities = 65/177 (36%), Positives = 105/177 (59%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ +Q T +Q +I L+G D+L + TGSGKT A+ +P++++L R R I
Sbjct: 208 LGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLL-FRDSEYR--AIRV 264
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+LPTRELALQ + L + F+ I + GG K+++ +RK +++ATPGRL+
Sbjct: 265 LILLPTRELALQCQSVMENLAQ-FSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLI 323
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
DH + + +E L+LDEADR+LD G++ +I + +E + Q++L SATL
Sbjct: 324 DHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNR---QTMLFSATL 377
Score = 240 (89.5 bits), Expect = 2.9e-41, Sum P(2) = 2.9e-41
Identities = 63/213 (29%), Positives = 116/213 (54%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV-IPD 623
E +I++ Q++L SATL V+ LA ++LQ PI++ D+L+ +
Sbjct: 356 EINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQV----------DALMQVTS 405
Query: 624 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG- 682
+L+Q F+ P+ L + +L C V + ++F ++ + H L + G
Sbjct: 406 TLEQEFVKIKPQ-HLSDRPAILLSLCTRVFN--QGGTIIFCRSKK--EVHR--LRIIFGL 458
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
++ +LHG++SQ +R + + FR + L+ +DVA+RGLD+ V ++ Y P++
Sbjct: 459 SDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMA 518
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+Y+HRVGRTAR G +G S F+ ++ KL++++
Sbjct: 519 NYIHRVGRTARAGMDGKSCSFITDNDRKLLKDI 551
Score = 125 (49.1 bits), Expect = 0.00057, P = 0.00057
Identities = 36/111 (32%), Positives = 61/111 (54%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+E L+LDEADR+LD G++ +I + +E + Q++L SATL V+ LA ++LQ PI
Sbjct: 337 LEILILDEADRLLDMGFKDEINKIVESCPTNR---QTMLFSATLNDEVKTLAKLSLQQPI 393
Query: 255 QIDAADSTDIHNTTDSLV-IPDSLKQHFIVTPPKLRLVALASFILGKCQNV 304
++ D+L+ + +L+Q F+ P+ L + +L C V
Sbjct: 394 RVQV----------DALMQVTSTLEQEFVKIKPQ-HLSDRPAILLSLCTRV 433
Score = 60 (26.2 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 220 EILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDA 258
+I++++ P F+ + LS L AVQ+L G + PIQ A
Sbjct: 183 KIVEEELPTFEELHLSRPLLKAVQKL-GFSQPTPIQAKA 220
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 300 (110.7 bits), Expect = 3.3e-41, Sum P(2) = 3.3e-41
Identities = 86/239 (35%), Positives = 137/239 (57%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
GI L E IT+ T +Q+ +I IL G D++ +++TG+GKTLA+ +PI++K+
Sbjct: 11 GISETFNHTLREN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID- 68
Query: 457 MRPKISRKDGIYAVIILPTRELALQ-TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR 515
P+ S + A+I+ PTRELALQ T EI L + V + + GG+ + + +++
Sbjct: 69 --PESS---DVQALIVAPTRELALQITTEIKKMLVQREDINVLA-IYGGQDVAQQLRKLK 122
Query: 516 KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 575
I+VATPGRLLDH + ET+ S + +VLDEAD++L G+ DI + L+ K
Sbjct: 123 GNTHIVVATPGRLLDHIRR-ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSK- 180
Query: 576 QFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST-D-----IHNTTDSLVIPDSLK 626
Q++L SAT+ +++LA + P IQ+ + + T D + TTD PD+L+
Sbjct: 181 --QTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAK-PDALR 236
Score = 272 (100.8 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 69/176 (39%), Positives = 110/176 (62%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 62
IT+ T +Q+ +I IL G D++ +++TG+GKTLA+ +PI++K+ P+ S + A+I
Sbjct: 25 ITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID---PESS---DVQALI 78
Query: 63 ILPTRELALQ-TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
+ PTRELALQ T EI L + V + + GG+ + + +++ I+VATPGRLLD
Sbjct: 79 VAPTRELALQITTEIKKMLVQREDINVLA-IYGGQDVAQQLRKLKGNTHIVVATPGRLLD 137
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
H + ET+ S + +VLDEAD++L G+ DI + L+ K Q++L SAT+
Sbjct: 138 HIRR-ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSK---QTMLFSATI 189
Score = 207 (77.9 bits), Expect = 3.3e-41, Sum P(2) = 3.3e-41
Identities = 60/180 (33%), Positives = 93/180 (51%)
Query: 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST 679
V D+++Q I T + + AL F++ + D+ ++F T+ A + L
Sbjct: 214 VTVDTIEQRVIETTDRAKPDALR-FVMDR------DQPFLAVIFCRTKVRASKLYDNLKG 266
Query: 680 VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS 739
LG N A +LHG + Q++R V K+FR K LI TDVAARGLD+ V + Y P
Sbjct: 267 -LGYNCA--ELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPE 323
Query: 740 SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN------RRIRIEEIKLKDCLQN 793
Y+HR+GRT R G G ++ F+ + K +EE++ +R IE+ K+K +N
Sbjct: 324 DVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGAPIQREIIEQPKIKRVDEN 383
Score = 100 (40.3 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
ET+ S + +VLDEAD++L G+ DI + L+ K Q++L SAT+ +++LA
Sbjct: 142 ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSK---QTMLFSATIPKDIKKLAK 198
Query: 248 MTLQNP--IQIDAADST-D-----IHNTTDSLVIPDSLK 278
+ P IQ+ + + T D + TTD PD+L+
Sbjct: 199 RYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAK-PDALR 236
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 300 (110.7 bits), Expect = 3.3e-41, Sum P(2) = 3.3e-41
Identities = 86/239 (35%), Positives = 137/239 (57%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
GI L E IT+ T +Q+ +I IL G D++ +++TG+GKTLA+ +PI++K+
Sbjct: 11 GISETFNHTLREN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID- 68
Query: 457 MRPKISRKDGIYAVIILPTRELALQ-TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR 515
P+ S + A+I+ PTRELALQ T EI L + V + + GG+ + + +++
Sbjct: 69 --PESS---DVQALIVAPTRELALQITTEIKKMLVQREDINVLA-IYGGQDVAQQLRKLK 122
Query: 516 KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 575
I+VATPGRLLDH + ET+ S + +VLDEAD++L G+ DI + L+ K
Sbjct: 123 GNTHIVVATPGRLLDHIRR-ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSK- 180
Query: 576 QFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST-D-----IHNTTDSLVIPDSLK 626
Q++L SAT+ +++LA + P IQ+ + + T D + TTD PD+L+
Sbjct: 181 --QTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAK-PDALR 236
Score = 272 (100.8 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 69/176 (39%), Positives = 110/176 (62%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 62
IT+ T +Q+ +I IL G D++ +++TG+GKTLA+ +PI++K+ P+ S + A+I
Sbjct: 25 ITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID---PESS---DVQALI 78
Query: 63 ILPTRELALQ-TLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
+ PTRELALQ T EI L + V + + GG+ + + +++ I+VATPGRLLD
Sbjct: 79 VAPTRELALQITTEIKKMLVQREDINVLA-IYGGQDVAQQLRKLKGNTHIVVATPGRLLD 137
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
H + ET+ S + +VLDEAD++L G+ DI + L+ K Q++L SAT+
Sbjct: 138 HIRR-ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSK---QTMLFSATI 189
Score = 207 (77.9 bits), Expect = 3.3e-41, Sum P(2) = 3.3e-41
Identities = 60/180 (33%), Positives = 93/180 (51%)
Query: 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST 679
V D+++Q I T + + AL F++ + D+ ++F T+ A + L
Sbjct: 214 VTVDTIEQRVIETTDRAKPDALR-FVMDR------DQPFLAVIFCRTKVRASKLYDNLKG 266
Query: 680 VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS 739
LG N A +LHG + Q++R V K+FR K LI TDVAARGLD+ V + Y P
Sbjct: 267 -LGYNCA--ELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPE 323
Query: 740 SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN------RRIRIEEIKLKDCLQN 793
Y+HR+GRT R G G ++ F+ + K +EE++ +R IE+ K+K +N
Sbjct: 324 DVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGAPIQREIIEQPKIKRVDEN 383
Score = 100 (40.3 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
ET+ S + +VLDEAD++L G+ DI + L+ K Q++L SAT+ +++LA
Sbjct: 142 ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSK---QTMLFSATIPKDIKKLAK 198
Query: 248 MTLQNP--IQIDAADST-D-----IHNTTDSLVIPDSLK 278
+ P IQ+ + + T D + TTD PD+L+
Sbjct: 199 RYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAK-PDALR 236
>TAIR|locus:2054688 [details] [associations]
symbol:AT2G07750 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AC004483 IPI:IPI00546939 PIR:E84488
RefSeq:NP_178818.1 UniGene:At.52694 ProteinModelPortal:O80792
SMR:O80792 PaxDb:O80792 PRIDE:O80792 EnsemblPlants:AT2G07750.1
GeneID:815422 KEGG:ath:AT2G07750 GeneFarm:994 TAIR:At2g07750
InParanoid:O80792 OMA:FRKTALK PhylomeDB:O80792
ProtClustDB:CLSN2713541 Genevestigator:O80792 GermOnline:AT2G07750
Uniprot:O80792
Length = 845
Score = 468 (169.8 bits), Expect = 3.3e-41, P = 3.3e-41
Identities = 135/463 (29%), Positives = 248/463 (53%)
Query: 371 IPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG 430
+ NV + +P +++++ ++E I P K L+ I ++T VQ ++ LDG
Sbjct: 357 VDNVMEEKQEP-HDSIYSAKRFDE-SCISPLTLKALSAS-GIVKMTRVQDATLSECLDGK 413
Query: 431 DVLVRSQTGSGKTLAYAIPIIQK-LQEMRPK--ISRKDGIYAVIILPTRELALQTLEIFT 487
D LV+++TG+GK++A+ +P I+ L+ M + + I+ +I+ PTRELA Q
Sbjct: 414 DALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGK 473
Query: 488 KLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGRLLDHCKHTE--TLKFSKVE 544
L K+ I L GG + + ++ R+ + IL+ATPGRLLDH ++ T + ++
Sbjct: 474 ALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALK 533
Query: 545 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
++DEAD +LD G++RD+ + ++ L +Q+ QS+L SAT+ V+R++ + L+
Sbjct: 534 LFIVDEADLLLDLGFKRDVEKIIDCLPRQR---QSLLFSATIPKEVRRVSQLVLKRDHSY 590
Query: 605 DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFM 664
D+ + + D +KQ IV P + L +L +++N + K++VF
Sbjct: 591 --IDTIGL----GCVETHDKVKQSCIVAPHESHF-HLVPHLLK--EHINNMPDYKIIVFC 641
Query: 665 ATQDMADYHTELLSTVLGE-NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARG 723
+T M T L+ T+L E + ++H Q RT V F+ +L+ +DV+ARG
Sbjct: 642 ST-GMV---TSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARG 697
Query: 724 LDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIE 783
++ P V ++Q PS Y+HR+GRT R G G LL + P E ++EL++ + +E
Sbjct: 698 MNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKD--LPLE 755
Query: 784 EIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAV 826
I D L + + +++ ++++ D +++ AA + + ++V
Sbjct: 756 PIPAPD-LDSRVKHQVDQSMAKI-DTSIKEAAYHAWLGYYNSV 796
Score = 271 (100.5 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 64/181 (35%), Positives = 109/181 (60%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK-LQEMRPK--ISRKDGIY 59
I ++T VQ ++ LDG D LV+++TG+GK++A+ +P I+ L+ M + + I+
Sbjct: 395 IVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIF 454
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR-KGISILVATPGR 118
+I+ PTRELA Q L K+ I L GG + + ++ R+ + IL+ATPGR
Sbjct: 455 VLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGR 514
Query: 119 LLDHCKHTE--TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
LLDH ++ T + ++ ++DEAD +LD G++RD+ + ++ L +Q+ QS+L SAT
Sbjct: 515 LLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQR---QSLLFSAT 571
Query: 177 L 177
+
Sbjct: 572 I 572
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 311 (114.5 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
Identities = 80/219 (36%), Positives = 129/219 (58%)
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMR 458
PF+K L E + T +Q+ I L+G +L S+TGSGKTLA+ +PI+++L Q +
Sbjct: 97 PFLKV-LYE-QKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVN 154
Query: 459 PKISRKD--GIY----AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA 512
K+ R + G Y A+I+LPTREL+LQ ++ L K T I S GG +K ++
Sbjct: 155 IKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLTKYVT-ITYSLFCGGIDIKQQEY 213
Query: 513 RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572
+K I V TPGR+LD ++ + + +E +V DEAD++L+ G++ + + L++ K
Sbjct: 214 EFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDVCKF 273
Query: 573 QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTD 611
+K Q + SATLT +++LA +L+NP+ I + S D
Sbjct: 274 KK---QILFFSATLTSDIKQLANFSLKNPVFIQSGMSFD 309
Score = 266 (98.7 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 67/179 (37%), Positives = 107/179 (59%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKD--GIY---- 59
T +Q+ I L+G +L S+TGSGKTLA+ +PI+++L Q + K+ R + G Y
Sbjct: 111 TYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITK 170
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
A+I+LPTREL+LQ ++ L K T I S GG +K ++ +K I V TPGR+
Sbjct: 171 ALILLPTRELSLQCYDVIRSLTKYVT-ITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRI 229
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
LD ++ + + +E +V DEAD++L+ G++ + + L++ K +K Q + SATLT
Sbjct: 230 LDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDVCKFKK---QILFFSATLT 285
Score = 211 (79.3 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
Identities = 58/172 (33%), Positives = 99/172 (57%)
Query: 618 SLVIPDSLKQHFI-VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE- 675
S I ++LKQ F+ + K R +L L C N+ ++ ++F T+ + H
Sbjct: 353 SFKISENLKQEFVNIIQEKYRKASL----LYLCNNIYKNH---CIIFFKTK--RETHLMY 403
Query: 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY 735
LL +L N+ +LHGSMSQ +R E F+ + L+ T++A+RG+D+ V +++ Y
Sbjct: 404 LLFDLL--NLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINY 461
Query: 736 TAPSSSTDYVHRVGRTARVGHEG-SSLLFLIPSEV---KLVEELQ-NRRIRI 782
PS+ YVHR+GRTAR+G EG +S L+L ++ K+V+ L+ ++ ++I
Sbjct: 462 NVPSNVIKYVHRIGRTARIGKEGIASTLYLQKEKIEVKKIVKGLKKSKNLKI 513
Score = 116 (45.9 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 25/69 (36%), Positives = 45/69 (65%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+E +V DEAD++L+ G++ + + L++ K +K Q + SATLT +++LA +L+NP+
Sbjct: 244 LEIVVFDEADKLLELGFKEECLKILDVCKFKK---QILFFSATLTSDIKQLANFSLKNPV 300
Query: 255 QIDAADSTD 263
I + S D
Sbjct: 301 FIQSGMSFD 309
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 311 (114.5 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
Identities = 80/219 (36%), Positives = 129/219 (58%)
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMR 458
PF+K L E + T +Q+ I L+G +L S+TGSGKTLA+ +PI+++L Q +
Sbjct: 97 PFLKV-LYE-QKFSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVN 154
Query: 459 PKISRKD--GIY----AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA 512
K+ R + G Y A+I+LPTREL+LQ ++ L K T I S GG +K ++
Sbjct: 155 IKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLTKYVT-ITYSLFCGGIDIKQQEY 213
Query: 513 RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572
+K I V TPGR+LD ++ + + +E +V DEAD++L+ G++ + + L++ K
Sbjct: 214 EFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDVCKF 273
Query: 573 QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTD 611
+K Q + SATLT +++LA +L+NP+ I + S D
Sbjct: 274 KK---QILFFSATLTSDIKQLANFSLKNPVFIQSGMSFD 309
Score = 266 (98.7 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 67/179 (37%), Positives = 107/179 (59%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKD--GIY---- 59
T +Q+ I L+G +L S+TGSGKTLA+ +PI+++L Q + K+ R + G Y
Sbjct: 111 TYIQRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITK 170
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
A+I+LPTREL+LQ ++ L K T I S GG +K ++ +K I V TPGR+
Sbjct: 171 ALILLPTRELSLQCYDVIRSLTKYVT-ITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRI 229
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
LD ++ + + +E +V DEAD++L+ G++ + + L++ K +K Q + SATLT
Sbjct: 230 LDLLLNSSSDFINYLEIVVFDEADKLLELGFKEECLKILDVCKFKK---QILFFSATLT 285
Score = 211 (79.3 bits), Expect = 3.7e-41, Sum P(2) = 3.7e-41
Identities = 58/172 (33%), Positives = 99/172 (57%)
Query: 618 SLVIPDSLKQHFI-VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE- 675
S I ++LKQ F+ + K R +L L C N+ ++ ++F T+ + H
Sbjct: 353 SFKISENLKQEFVNIIQEKYRKASL----LYLCNNIYKNH---CIIFFKTK--RETHLMY 403
Query: 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY 735
LL +L N+ +LHGSMSQ +R E F+ + L+ T++A+RG+D+ V +++ Y
Sbjct: 404 LLFDLL--NLRCAELHGSMSQKKRIESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINY 461
Query: 736 TAPSSSTDYVHRVGRTARVGHEG-SSLLFLIPSEV---KLVEELQ-NRRIRI 782
PS+ YVHR+GRTAR+G EG +S L+L ++ K+V+ L+ ++ ++I
Sbjct: 462 NVPSNVIKYVHRIGRTARIGKEGIASTLYLQKEKIEVKKIVKGLKKSKNLKI 513
Score = 116 (45.9 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 25/69 (36%), Positives = 45/69 (65%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+E +V DEAD++L+ G++ + + L++ K +K Q + SATLT +++LA +L+NP+
Sbjct: 244 LEIVVFDEADKLLELGFKEECLKILDVCKFKK---QILFFSATLTSDIKQLANFSLKNPV 300
Query: 255 QIDAADSTD 263
I + S D
Sbjct: 301 FIQSGMSFD 309
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 305 (112.4 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 79/230 (34%), Positives = 125/230 (54%)
Query: 389 PTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI 448
P ++ E I P + + L E + Q T +Q +I + G D++ + TGSGKT +A+
Sbjct: 7 PATFTELGLITPLLAR-LAE-LEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFAL 64
Query: 449 PIIQKLQE---MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT-GG 504
P++QKL+E K S+ + + ++++PTRELA Q + F + + GG
Sbjct: 65 PMLQKLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGG 124
Query: 505 EKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA 564
+ + +R G+ ILVATPGRLLD + +K KV+ LVLDEADR+L G+ ++
Sbjct: 125 VSVNIQMLALRGGVDILVATPGRLLDLIS-SNAIKLDKVKTLVLDEADRMLSLGFTEELT 183
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPI--QIDAADSTDI 612
L + K+K Q++L SAT V L L NPI Q+ +AD++ +
Sbjct: 184 ALLALTPKKK---QTLLFSATFPEQVTTLTQELLNNPIEIQLQSADASTL 230
Score = 267 (99.0 bits), Expect = 6.8e-36, Sum P(2) = 6.8e-36
Identities = 64/176 (36%), Positives = 100/176 (56%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE---MRPKISRKDGIYAV 61
Q T +Q +I + G D++ + TGSGKT +A+P++QKL+E K S+ + + +
Sbjct: 30 QPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGL 89
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLT-GGEKMKSEKARIRKGISILVATPGRLL 120
+++PTRELA Q + F + + GG + + +R G+ ILVATPGRLL
Sbjct: 90 VLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGVDILVATPGRLL 149
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
D + +K KV+ LVLDEADR+L G+ ++ L + K+K Q++L SAT
Sbjct: 150 DLIS-SNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKK---QTLLFSAT 201
Score = 194 (73.4 bits), Expect = 3.9e-41, Sum P(2) = 3.9e-41
Identities = 53/178 (29%), Positives = 94/178 (52%)
Query: 624 SLKQHFIVTPPKLRLVAL-ASFILGKCQNVNEDEESKMLVFMATQDM---------ADYH 673
+L Q + P +++L + AS ++ + VN+ E++ +L + Q+ A +H
Sbjct: 208 TLTQELLNNPIEIQLQSADASTLVQRVFTVNKGEKTAVLAHLIQQEQWRQALIFVNAKHH 267
Query: 674 TELLSTVLGEN-IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWI 732
E L+ L + I HG QSER+ V F++ VLI TD+AARGLD+ + +
Sbjct: 268 CEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLDIEKLPVV 327
Query: 733 VQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE----VKLVEELQNRRIRIEEIK 786
+ + P S +DY+HR+GR+ R G G ++ LI E ++E+ R++ E+++
Sbjct: 328 INFNLPRSPSDYMHRIGRSGRAGEVGLAIS-LIDHEDYHHFSVIEKKNKFRLKREQVE 384
Score = 122 (48.0 bits), Expect = 8.0e-20, Sum P(2) = 8.0e-20
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 187 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA 246
+ +K KV+ LVLDEADR+L G+ ++ L + K+K Q++L SAT V L
Sbjct: 154 SNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKK---QTLLFSATFPEQVTTLT 210
Query: 247 GMTLQNPI--QIDAADSTDI 264
L NPI Q+ +AD++ +
Sbjct: 211 QELLNNPIEIQLQSADASTL 230
Score = 40 (19.1 bits), Expect = 8.8e-20, Sum P(2) = 8.8e-20
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 504 GEKMKSEKARIRKG-----ISILVAT 524
G+K +SE++R+ G I +L+AT
Sbjct: 287 GDKGQSERSRVLDGFKAGDIEVLIAT 312
Score = 37 (18.1 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 238 LTPAVQRLAGMTLQNPIQIDA 258
+TP + RLA + P I A
Sbjct: 16 ITPLLARLAELEYHQPTPIQA 36
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 324 (119.1 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 77/227 (33%), Positives = 133/227 (58%)
Query: 388 APTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYA 447
A S++EF P ++ L +N T T +QQ +I L G D++ + TGSGKT A+
Sbjct: 296 AKRSFQEFNLSRPILR-GL-AAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFV 353
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507
+PI+++L RP+ + I++PTRELA+Q + TKL ++T I L GG +
Sbjct: 354 VPILERLL-FRPRKVPTSRV--AILMPTRELAVQCYNVATKLA-TYTDITFCQLVGGFSL 409
Query: 508 KSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFL 567
+ ++ ++K +++ATPGR +DH +++ + +E LVLDEADR+L+ G+ ++ E L
Sbjct: 410 REQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEIL 469
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ--IDAADSTDI 612
+ K + Q++L SAT+T +V +L + L P++ +D +T +
Sbjct: 470 TTIPKSR---QTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAV 513
Score = 290 (107.1 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
Identities = 65/178 (36%), Positives = 109/178 (61%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+N T T +QQ +I L G D++ + TGSGKT A+ +PI+++L RP+ +
Sbjct: 316 VNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-FRPRKVPTSRV-- 372
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
I++PTRELA+Q + TKL ++T I L GG ++ ++ ++K +++ATPGR +
Sbjct: 373 AILMPTRELAVQCYNVATKLA-TYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFI 431
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH +++ + +E LVLDEADR+L+ G+ ++ E L + K + Q++L SAT+T
Sbjct: 432 DHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSR---QTMLFSATMT 486
Score = 235 (87.8 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
Identities = 72/219 (32%), Positives = 113/219 (51%)
Query: 556 DQGYERDIAEFL-EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHN 614
D+ E A+ L EIL Q++L SAT+T +V +L + L P+++ D+ N
Sbjct: 454 DRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRL-MVDTKK--N 510
Query: 615 TTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHT 674
T +LV Q F+ P L ++L C+ V +++VF + A +
Sbjct: 511 TAVTLV------QEFVRLRPGREDKRLG-YLLHLCKEVYT---GRVIVFFRQKKEA-HRV 559
Query: 675 ELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734
++ +LG A +LHGSMSQ +R + ++FR L+ TD+A+RGLD+ V+ ++
Sbjct: 560 RIVFGLLGLKAA--ELHGSMSQEQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVIN 617
Query: 735 YTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVE 773
Y AP S YVHRVGRTAR G G + + K+V+
Sbjct: 618 YEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKVVK 656
Score = 41 (19.5 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 304 VNEDEESKMLVFMATQDMADYHTELLSTXXXXXXXXEYNI 343
V+ +EE+K F A ++ D E +T E+N+
Sbjct: 269 VDAEEEAKRKAFFAPEEKTD---EDAATNSAKRSFQEFNL 305
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 282 (104.3 bits), Expect = 4.3e-41, Sum P(2) = 4.3e-41
Identities = 89/260 (34%), Positives = 140/260 (53%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
++EE G+ ++ N + + + +Q +I IL G D++ ++TGSGKT ++AIPI
Sbjct: 5 TFEEL-GLTTWLVANCKQ-LGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPI 62
Query: 451 IQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510
+ +L E P G++AVI+ PTRELA+Q E F + + S + GG ++
Sbjct: 63 LNQLSE-DPY-----GVFAVILTPTRELAVQIGEQFNAIGAPMN-VNCSVVIGGIDNVTQ 115
Query: 511 KARIRKGISILVATPGRLLDHCKH--TETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ K I+VATPGRL H + LKF K LVLDEADR+L + +E +IA LE
Sbjct: 116 ALILDKRPHIIVATPGRLASHLNNGLKIALKFCKF--LVLDEADRLLGEDFELEIASILE 173
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
L + + Q++L SAT+T + +L + L P + D++ ++T D+L KQ
Sbjct: 174 HLPPPEKR-QTLLFSATMTKNLTKLDSIALNKPFIFE--DNSK-YDTVDTL------KQE 223
Query: 629 FIVTPPKLRLVALASFILGK 648
+I P + L +IL K
Sbjct: 224 YIYMPAPTKDCYLV-YILKK 242
Score = 254 (94.5 bits), Expect = 7.2e-38, Sum P(2) = 7.2e-38
Identities = 70/174 (40%), Positives = 102/174 (58%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +Q +I IL G D++ ++TGSGKT ++AIPI+ +L E P G++AVI+ PT
Sbjct: 28 SNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSE-DPY-----GVFAVILTPT 81
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH- 125
RELA+Q E F + + S + GG ++ + K I+VATPGRL H +
Sbjct: 82 RELAVQIGEQFNAIGAPMN-VNCSVVIGGIDNVTQALILDKRPHIIVATPGRLASHLNNG 140
Query: 126 -TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
LKF K LVLDEADR+L + +E +IA LE L + + Q++L SAT+T
Sbjct: 141 LKIALKFCKF--LVLDEADRLLGEDFELEIASILEHLPPPEKR-QTLLFSATMT 191
Score = 233 (87.1 bits), Expect = 4.3e-41, Sum P(2) = 4.3e-41
Identities = 58/155 (37%), Positives = 85/155 (54%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
D+LKQ +I P + L +IL K E S +VF+ Y E + +L
Sbjct: 218 DTLKQEYIYMPAPTKDCYLV-YILKK------HEGSSAIVFVNNC----YAVEAVKGMLN 266
Query: 683 E-NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSS 741
+ +I LH + Q R KTF+S K VL+ TDVA+RGLD+P V ++ Y +SS
Sbjct: 267 KLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSS 326
Query: 742 TDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
DY+HRVGRTAR G G ++ F+ P +V L++ ++
Sbjct: 327 KDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIE 361
Score = 42 (19.8 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 273 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA-TQDMA 322
IP+ LK I+ K ASF + ++ED V + T+++A
Sbjct: 35 IPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELA 85
>ASPGD|ASPL0000028276 [details] [associations]
symbol:AN5623 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001305
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268799
ProteinModelPortal:C8VFX5 EnsemblFungi:CADANIAT00003447 OMA:STIGKMG
Uniprot:C8VFX5
Length = 567
Score = 445 (161.7 bits), Expect = 4.7e-41, P = 4.7e-41
Identities = 118/358 (32%), Positives = 191/358 (53%)
Query: 431 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 490
D LV+++TG+GKT+A+ +P + L + + ++ R+ + +II PTRELA Q + +L
Sbjct: 51 DCLVQAKTGTGKTVAFLLPALHCLIQGQSQV-RRGQVAILIITPTRELAQQIAKSCDELT 109
Query: 491 KSFTWIVPSWLT-GGEKMKSEKARIRKGI-SILVATPGRLLDHCKHTETL-KFSKVEHLV 547
+ + + GG S +R G SILVATPGRL D+ +ET K ++ LV
Sbjct: 110 SQLSRPLECHIAVGGTARASAHSRFMNGDPSILVATPGRLKDYLSESETAEKLKDIQTLV 169
Query: 548 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAA 607
LDEAD +L+ G+ D+ + L+++ + +Q + SATL P V+ + + L NP
Sbjct: 170 LDEADTMLETGFLADVKQILKLIPSKSTGWQGMCFSATLPPKVKDVVSVVL-NP------ 222
Query: 608 DSTDIHNTTDSLVIP--DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 665
T I +T D P + + Q++++ P S +L N +K++VF
Sbjct: 223 GYTSI-STVDKNEPPTHERVPQYYVLMPSVAETFTTLSSLLAHESKKN----TKIIVFGV 277
Query: 666 TQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLD 725
T +M + L + F++H +SQS RT F+ +G+L +DV RG+D
Sbjct: 278 TANMVALSHSAFANGLTP-LKVFEIHSRLSQSARTRTTSQFKEADAGILFASDVIGRGMD 336
Query: 726 LPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIE 783
P VD +VQ PS++ YVHRVGRTAR G++G +++ L SE ++ NR + I+
Sbjct: 337 FPNVDLVVQVGLPSNAEQYVHRVGRTARAGNDGRAVILLTESESFFLKA--NRHLPIQ 392
Score = 238 (88.8 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 58/161 (36%), Positives = 94/161 (58%)
Query: 22 DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLC 81
D LV+++TG+GKT+A+ +P + L + + ++ R+ + +II PTRELA Q + +L
Sbjct: 51 DCLVQAKTGTGKTVAFLLPALHCLIQGQSQV-RRGQVAILIITPTRELAQQIAKSCDELT 109
Query: 82 KSFTWIVPSWLT-GGEKMKSEKARIRKGI-SILVATPGRLLDHCKHTETL-KFSKVEHLV 138
+ + + GG S +R G SILVATPGRL D+ +ET K ++ LV
Sbjct: 110 SQLSRPLECHIAVGGTARASAHSRFMNGDPSILVATPGRLKDYLSESETAEKLKDIQTLV 169
Query: 139 LDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
LDEAD +L+ G+ D+ + L+++ + +Q + SATL P
Sbjct: 170 LDEADTMLETGFLADVKQILKLIPSKSTGWQGMCFSATLPP 210
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 308 (113.5 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
Identities = 74/206 (35%), Positives = 118/206 (57%)
Query: 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
+P K + +G + T +Q+ +I ILDG DV+ ++TGSGKT + +P+ ++L+
Sbjct: 104 YPVFKGIMKKGYKVP--TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAR- 160
Query: 459 PKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGI 518
S + G A+I+ PTRELALQT++ FTK FT + + + GG+KM+ + A + +
Sbjct: 161 ---SAQTGARALILSPTRELALQTMK-FTKELGKFTGLKTALILGGDKMEDQFAALHENP 216
Query: 519 SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQ 578
I++ATPGRL+ H LK VE++V DEADR+ + G+ + E I+ + Q
Sbjct: 217 DIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQE---IIGRLPGGHQ 272
Query: 579 SILLSATLTPAVQRLAGMTLQNPIQI 604
++L SATL + A L P+ I
Sbjct: 273 TVLFSATLPKLLVEFARAGLTEPVLI 298
Score = 291 (107.5 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
Identities = 67/171 (39%), Positives = 105/171 (61%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ +I ILDG DV+ ++TGSGKT + +P+ ++L+ S + G A+I+ PT
Sbjct: 119 TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAR----SAQTGARALILSPT 174
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQT++ FTK FT + + + GG+KM+ + A + + I++ATPGRL+ H
Sbjct: 175 RELALQTMK-FTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVE 232
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LK VE++V DEADR+ + G+ + E I+ + Q++L SATL
Sbjct: 233 MNLKLQSVEYVVFDEADRLFEMGFAEQLQE---IIGRLPGGHQTVLFSATL 280
Score = 217 (81.4 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
Identities = 65/214 (30%), Positives = 108/214 (50%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ LK F + + L ++L QNV ++ + VF+AT+ A+Y TELL+ G
Sbjct: 308 EQLKTSFFLVREDTKTAVLL-YLL---QNVVRPQDQNV-VFVATKHHAEYLTELLT---G 359
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+ ++ ++ ++ Q+ R F K LI TD+AARGLD+PL+D ++ Y+ P+
Sbjct: 360 QGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGK 419
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ---NRRIRIEEIKLKDCLQNLLSVKM 799
++HRVGR AR G G++ + P EV + +L R + + + +V
Sbjct: 420 LFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPHEEPSSAG--AVGR 477
Query: 800 EGDLSRLADGNVE----TAATALQMSFESAVLQQ 829
+G L R+ V+ + TALQ S E LQ+
Sbjct: 478 DGVLGRVPQSVVDDEDSSLQTALQASLELQGLQR 511
Score = 98 (39.6 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 46/165 (27%), Positives = 76/165 (46%)
Query: 96 EKMKSEKARIRKGISILVATPGR--LLDHCKHTETL-KFSKVEHLVLDEADRILDQGYER 152
E++K+ A+ G L+ +P R L K T+ L KF+ ++ ++ D++ DQ
Sbjct: 155 ERLKARSAQT--GARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQ---- 208
Query: 153 DIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTE-TLKFSKVEHLVLDEADRILDQGY 211
F + + P I+++ TP E LK VE++V DEADR+ + G+
Sbjct: 209 ----FAAL--HENPD---IIIA---TPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGF 256
Query: 212 ERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+ E I+ + Q+VL SATL + A L P+ I
Sbjct: 257 AEQLQE---IIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLI 298
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 307 (113.1 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 76/209 (36%), Positives = 126/209 (60%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +Q +I IL G D++ +QTG+GKT ++ +PI++KL++ + + RK + A+I++PT
Sbjct: 25 THIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQ--RKKRVRALILVPT 82
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA+Q E + K T + + GG +++K R+ G+ +LVATPGRL+D
Sbjct: 83 RELAMQVAEKVEQYGKD-TGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMD-LYGQ 140
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+ F ++E +VLDEADR+LD G+ I + ++ L + QF +L SATL+ V+ LA
Sbjct: 141 RAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV-QF--LLFSATLSRKVRELAK 197
Query: 596 MTLQNPIQID-AADSTDIHNTTDSLVIPD 623
+++P +I AA+ N + L+ D
Sbjct: 198 TAVRDPHEISIAANQASKSNISQWLITVD 226
Score = 278 (102.9 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 66/172 (38%), Positives = 108/172 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I IL G D++ +QTG+GKT ++ +PI++KL++ + + RK + A+I++PT
Sbjct: 25 THIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQ--RKKRVRALILVPT 82
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA+Q E + K T + + GG +++K R+ G+ +LVATPGRL+D
Sbjct: 83 RELAMQVAEKVEQYGKD-TGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMD-LYGQ 140
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ F ++E +VLDEADR+LD G+ I + ++ L + QF +L SATL+
Sbjct: 141 RAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV-QF--LLFSATLS 189
Score = 167 (63.8 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 39/127 (30%), Positives = 68/127 (53%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+NE + + L+F+ T+ A +L+S + I H SQ+ R ++ + F+S K
Sbjct: 238 INEQQWDQALIFIETKHGA---AKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKI 294
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
L+ T VAARG+D+ + +V Y P + +YVHR+GRT R G ++ F+ K
Sbjct: 295 KYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKN 354
Query: 772 VEELQNR 778
+ +++R
Sbjct: 355 LCMIESR 361
Score = 117 (46.2 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 192 FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQ 251
F ++E +VLDEADR+LD G+ I + ++ L + QF +L SATL+ V+ LA ++
Sbjct: 145 FEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV-QF--LLFSATLSRKVRELAKTAVR 201
Query: 252 NPIQID-AADSTDIHNTTDSLVIPD 275
+P +I AA+ N + L+ D
Sbjct: 202 DPHEISIAANQASKSNISQWLITVD 226
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 307 (113.1 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 76/209 (36%), Positives = 126/209 (60%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +Q +I IL G D++ +QTG+GKT ++ +PI++KL++ + + RK + A+I++PT
Sbjct: 25 THIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQ--RKKRVRALILVPT 82
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA+Q E + K T + + GG +++K R+ G+ +LVATPGRL+D
Sbjct: 83 RELAMQVAEKVEQYGKD-TGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMD-LYGQ 140
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+ F ++E +VLDEADR+LD G+ I + ++ L + QF +L SATL+ V+ LA
Sbjct: 141 RAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV-QF--LLFSATLSRKVRELAK 197
Query: 596 MTLQNPIQID-AADSTDIHNTTDSLVIPD 623
+++P +I AA+ N + L+ D
Sbjct: 198 TAVRDPHEISIAANQASKSNISQWLITVD 226
Score = 278 (102.9 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 66/172 (38%), Positives = 108/172 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I IL G D++ +QTG+GKT ++ +PI++KL++ + + RK + A+I++PT
Sbjct: 25 THIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQ--RKKRVRALILVPT 82
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA+Q E + K T + + GG +++K R+ G+ +LVATPGRL+D
Sbjct: 83 RELAMQVAEKVEQYGKD-TGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMD-LYGQ 140
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ F ++E +VLDEADR+LD G+ I + ++ L + QF +L SATL+
Sbjct: 141 RAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV-QF--LLFSATLS 189
Score = 167 (63.8 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 39/127 (30%), Positives = 68/127 (53%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+NE + + L+F+ T+ A +L+S + I H SQ+ R ++ + F+S K
Sbjct: 238 INEQQWDQALIFIETKHGA---AKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKI 294
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
L+ T VAARG+D+ + +V Y P + +YVHR+GRT R G ++ F+ K
Sbjct: 295 KYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKN 354
Query: 772 VEELQNR 778
+ +++R
Sbjct: 355 LCMIESR 361
Score = 117 (46.2 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 192 FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQ 251
F ++E +VLDEADR+LD G+ I + ++ L + QF +L SATL+ V+ LA ++
Sbjct: 145 FEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEV-QF--LLFSATLSRKVRELAKTAVR 201
Query: 252 NPIQID-AADSTDIHNTTDSLVIPD 275
+P +I AA+ N + L+ D
Sbjct: 202 DPHEISIAANQASKSNISQWLITVD 226
>ASPGD|ASPL0000034540 [details] [associations]
symbol:spb4 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001306 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AACD01000052
HOGENOM:HOG000268803 KO:K14809 OMA:CACVEYW RefSeq:XP_660780.1
ProteinModelPortal:Q5B8F4 STRING:Q5B8F4
EnsemblFungi:CADANIAT00009893 GeneID:2873958 KEGG:ani:AN3176.2
OrthoDB:EOG46MFT3 Uniprot:Q5B8F4
Length = 638
Score = 352 (129.0 bits), Expect = 5.8e-41, Sum P(3) = 5.8e-41
Identities = 96/289 (33%), Positives = 148/289 (51%)
Query: 496 IVPSWLTGGEKMKSEKAR--IRKGISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEAD 552
+VP L GG +E +++ ++LVATPGRLL+ S E LVLDEAD
Sbjct: 141 VVPQLLLGGSTSPAEDLSTFLKRSPNLLVATPGRLLELLSSPHVYCPQSSFEMLVLDEAD 200
Query: 553 RILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDI 612
R+LD G++ + L L KQ+ ++ L SA+++ AV ++ + L+NP+++
Sbjct: 201 RLLDLGFKETLQNILRRLPKQR---RTGLFSASVSEAVDQIVRVGLRNPVKVVV--KVKG 255
Query: 613 HNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADY 672
+ D P SL+ ++ PP + AL IL Q SK + F++T DY
Sbjct: 256 ASGVDDKRTPASLQMTYLTQPPTGKFPAL-KHILNSVQPT----PSKSIFFVSTCSGVDY 310
Query: 673 HTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS-GVLICTDVAARGLDLPLVDW 731
+ +L +LG + LHG + R + F F + + +L+ TDVA+RGLD+P VD
Sbjct: 311 LSVILPLILGNDFQLIPLHGKHPANVRQKNFNRFVNAHNPAILLTTDVASRGLDIPSVDL 370
Query: 732 IVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQNRR 779
+VQ PS ++HR GR R G G S++ L P E V L+ R+
Sbjct: 371 VVQIDPPSDPKTFIHRCGRAGRAGRRGLSVVLLHPGREEDYVSFLEVRK 419
Score = 151 (58.2 bits), Expect = 5.8e-41, Sum P(3) = 5.8e-41
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T++T VQ +I + DV+V + TGSGKTL++ IP+++KL + I +K + A
Sbjct: 32 MGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPI-KKHHVGA 90
Query: 61 VIILPTRELALQTLEIFTKL 80
+I+ PTRELA Q + T L
Sbjct: 91 IIVSPTRELASQIYNVLTSL 110
Score = 151 (58.2 bits), Expect = 5.8e-41, Sum P(3) = 5.8e-41
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
M T++T VQ +I + DV+V + TGSGKTL++ IP+++KL + I +K + A
Sbjct: 32 MGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPI-KKHHVGA 90
Query: 470 VIILPTRELALQTLEIFTKL 489
+I+ PTRELA Q + T L
Sbjct: 91 IIVSPTRELASQIYNVLTSL 110
Score = 139 (54.0 bits), Expect = 4.8e-17, Sum P(3) = 4.8e-17
Identities = 43/137 (31%), Positives = 70/137 (51%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252
S E LVLDEADR+LD G++ + L L KQ+ ++ L SA+++ AV ++ + L+N
Sbjct: 189 SSFEMLVLDEADRLLDLGFKETLQNILRRLPKQR---RTGLFSASVSEAVDQIVRVGLRN 245
Query: 253 PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKM 312
P+++ + D P SL+ ++ PP + AL IL Q SK
Sbjct: 246 PVKVVV--KVKGASGVDDKRTPASLQMTYLTQPPTGKFPAL-KHILNSVQPT----PSKS 298
Query: 313 LVFMATQDMADYHTELL 329
+ F++T DY + +L
Sbjct: 299 IFFVSTCSGVDYLSVIL 315
Score = 130 (50.8 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 87 IVPSWLTGGEKMKSEKAR--IRKGISILVATPGRLLDHCKHTETL-KFSKVEHLVLDEAD 143
+VP L GG +E +++ ++LVATPGRLL+ S E LVLDEAD
Sbjct: 141 VVPQLLLGGSTSPAEDLSTFLKRSPNLLVATPGRLLELLSSPHVYCPQSSFEMLVLDEAD 200
Query: 144 RILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
R+LD G++ + L L KQ+ ++ L SA+++ A
Sbjct: 201 RLLDLGFKETLQNILRRLPKQR---RTGLFSASVSEA 234
Score = 53 (23.7 bits), Expect = 5.8e-41, Sum P(3) = 5.8e-41
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 814 AATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFA 873
AA A + + V + +H K + SW+R Y+ + IF + K++
Sbjct: 436 AAAATETA-RKVVKADRAIHDRGQKAFVSWLRSYSKHQAS--SIFRVADLDWEGLGKAWG 492
Query: 874 LRDAPSV 880
L P +
Sbjct: 493 LLKLPKM 499
Score = 46 (21.3 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 106 RKGISILVATPGRLLDHCKHTETLK 130
R+G+S+++ PGR D+ E K
Sbjct: 395 RRGLSVVLLHPGREEDYVSFLEVRK 419
Score = 44 (20.5 bits), Expect = 3.3e-15, Sum P(3) = 3.3e-15
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 206 ILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAA 259
+L G E D FLE+ K F + T++ A A T + ++ D A
Sbjct: 402 LLHPGREEDYVSFLEVRKTPVAPFPHPI---TVSDAEAAAATETARKVVKADRA 452
Score = 41 (19.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 145 ILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETL-KFSKVEHLVLDEA 203
+L G E D FLE+ K F + T++ A TET K K + + D
Sbjct: 402 LLHPGREEDYVSFLEVRKTPVAPFPHPI---TVSDAEA-AAATETARKVVKADRAIHDRG 457
Query: 204 DR 205
+
Sbjct: 458 QK 459
>FB|FBgn0037561 [details] [associations]
symbol:CG9630 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P10081 KO:K14809
GeneTree:ENSGT00550000074969 EMBL:AY051513 RefSeq:NP_649777.1
UniGene:Dm.1101 ProteinModelPortal:Q9VHU1 SMR:Q9VHU1 IntAct:Q9VHU1
STRING:Q9VHU1 PaxDb:Q9VHU1 PRIDE:Q9VHU1 EnsemblMetazoa:FBtr0081866
GeneID:40974 KEGG:dme:Dmel_CG9630 UCSC:CG9630-RA
FlyBase:FBgn0037561 InParanoid:Q9VHU1 OMA:CACVEYW OrthoDB:EOG4TDZ1Q
PhylomeDB:Q9VHU1 GenomeRNAi:40974 NextBio:821545 Bgee:Q9VHU1
GermOnline:CG9630 Uniprot:Q9VHU1
Length = 613
Score = 449 (163.1 bits), Expect = 7.0e-41, P = 7.0e-41
Identities = 143/479 (29%), Positives = 232/479 (48%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI--SRKD 465
+ Q+T VQ +I +L DV + TGSGKTLA+ +P+++ LQ + K+
Sbjct: 23 QSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETPWGPKE 82
Query: 466 GIYAVIILPTRELALQTLEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGIS-ILV 522
I A++I PTRELA Q E+ + + + + GG ++ + A +R+ ILV
Sbjct: 83 -IGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILV 141
Query: 523 ATPGRLLDHCKHT-ETLKFS-KVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQS 579
TPGRL D + + L + +V+ L D D+ + + + P Q ++
Sbjct: 142 CTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEA-DRLLDLGFKTSVNNILGYLPRQRRT 200
Query: 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLV 639
L SAT T V L L+NP+ + + + NT P L+ + + P+L+ V
Sbjct: 201 GLFSATQTTEVTDLIRAGLRNPVLVSVKEKASV-NT------PARLQNFYRIVEPELKFV 253
Query: 640 ALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSER 699
AL F+ + K++VF T +Y E L +L + +HG M +++R
Sbjct: 254 ALLEFLSSPATVIG-----KVMVFFPTCACVEYWAEALPPLLPKRTVL-GIHGKM-KNKR 306
Query: 700 TEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGS 759
V + FR+ VL+CTDV ARGLD+P ++W+VQ+ PS+++ +VHRVGRTAR G+EG+
Sbjct: 307 ANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQGNEGN 366
Query: 760 SLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQ 819
+L+FL+PSE V L+ + ++E L LL+ + E AD + L
Sbjct: 367 ALVFLLPSEDAYVHFLKINQ-KVE-------LTKLLTEEAED-----ADREKKKLPAVLD 413
Query: 820 MSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAP 878
K ++ + + S VR Y + + I K + LG A ++ L P
Sbjct: 414 Q-LHRLQAADKGVYDKGMRAFVSHVRAYTKH--ECSAILRLKDLDLGKMATAYGLLQLP 469
Score = 216 (81.1 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 65/184 (35%), Positives = 100/184 (54%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI--SRKDGIYAVI 62
Q+T VQ +I +L DV + TGSGKTLA+ +P+++ LQ + K+ I A++
Sbjct: 29 QMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQRRHKETPWGPKE-IGALV 87
Query: 63 ILPTRELALQTLEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGIS-ILVATPGRL 119
I PTRELA Q E+ + + + + GG ++ + A +R+ ILV TPGRL
Sbjct: 88 ISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTPGRL 147
Query: 120 LDHCKHT-ETLKFS----KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 174
D + + L + +E LVLDEADR+LD G++ + L L +Q+ ++ L S
Sbjct: 148 EDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQR---RTGLFS 204
Query: 175 ATLT 178
AT T
Sbjct: 205 ATQT 208
Score = 149 (57.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 70/259 (27%), Positives = 115/259 (44%)
Query: 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKV 134
E T K+ ++VP L ++ E K I LV +P R L + +E L +
Sbjct: 50 EAVTGSGKTLAFLVPM-LEILQRRHKETPWGPKEIGALVISPTRELAR-QISEVLA-QFL 106
Query: 135 EHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFS- 193
EH L+ ++ L G I E + L+++ P IL+ + + + L +
Sbjct: 107 EHEDLEHLNQQLIVG-GNSIEEDIATLRRETP---CILVCTPGRLEDLFQRKGDDLNLAA 162
Query: 194 ---KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTL 250
+E LVLDEADR+LD G++ + L L +Q+ ++ L SAT T V L L
Sbjct: 163 QVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQR---RTGLFSATQTTEVTDLIRAGL 219
Query: 251 QNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEES 310
+NP+ + + + NT P L+ + + P+L+ VAL F+ +
Sbjct: 220 RNPVLVSVKEKASV-NT------PARLQNFYRIVEPELKFVALLEFLSSPATVIG----- 267
Query: 311 KMLVFMATQDMADYHTELL 329
K++VF T +Y E L
Sbjct: 268 KVMVFFPTCACVEYWAEAL 286
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 301 (111.0 bits), Expect = 8.3e-41, Sum P(2) = 8.3e-41
Identities = 73/208 (35%), Positives = 122/208 (58%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKIS--RKD 465
E IT + +Q+ + P L G D++ R++TG+GKTLA+ IPII++L E + R+
Sbjct: 118 EKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRS 177
Query: 466 GIYA--VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
G +++ PTRELA Q + ++ +S ++ + GG +++ + +G+ ++V
Sbjct: 178 GRLPKFLVLAPTRELAKQ---VEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVG 234
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
TPGR++D + +LK +VE+LVLDEAD++L G+E + LE L ++ QS+L S
Sbjct: 235 TPGRIIDLIEG-RSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR---QSMLFS 290
Query: 584 ATLTPAVQRLAGMTLQNPIQIDAADSTD 611
AT+ V++LA L NP+ ID D
Sbjct: 291 ATMPTWVKKLARKYLDNPLNIDLVGDQD 318
Score = 264 (98.0 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 66/187 (35%), Positives = 112/187 (59%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKIS--RKDGIYA 60
IT + +Q+ + P L G D++ R++TG+GKTLA+ IPII++L E + R+ G
Sbjct: 122 ITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLP 181
Query: 61 --VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
+++ PTRELA Q + ++ +S ++ + GG +++ + +G+ ++V TPGR
Sbjct: 182 KFLVLAPTRELAKQ---VEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
++D + +LK +VE+LVLDEAD++L G+E + LE L ++ QS+L SAT+
Sbjct: 239 IIDLIEG-RSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR---QSMLFSATM- 293
Query: 179 PATCWCK 185
P W K
Sbjct: 294 PT--WVK 298
Score = 219 (82.2 bits), Expect = 8.3e-41, Sum P(2) = 8.3e-41
Identities = 49/118 (41%), Positives = 67/118 (56%)
Query: 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
K +VF T+ AD +S L +IA LHG +SQ +R FR K VL+ TD
Sbjct: 353 KTIVFTQTKRDADE----VSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATD 408
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
VA+RGLD+P VD ++ Y P+ +VHR GRT R G EGS++L S+ + V L+
Sbjct: 409 VASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLE 466
Score = 135 (52.6 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
+LK +VE+LVLDEAD++L G+E + LE L ++ QS+L SAT+ V++LA
Sbjct: 247 SLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR---QSMLFSATMPTWVKKLARK 303
Query: 249 TLQNPIQIDAADSTD 263
L NP+ ID D
Sbjct: 304 YLDNPLNIDLVGDQD 318
Score = 43 (20.2 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 546 LVLDEADRILDQGYERDIAEFL--EILKKQKPQFQSILLSATLTP 588
L+ D DRI QG D+ E + E+L+K P+ S+ + L P
Sbjct: 590 LIAD--DRI--QGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPP 630
Score = 37 (18.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 500 WLTGGEKMKSEKARIRK 516
WL GG S +A R+
Sbjct: 706 WLIGGRSSSSSRAPSRE 722
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 342 (125.4 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 72/203 (35%), Positives = 124/203 (61%)
Query: 409 GMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 468
G + T +QQ I L G D+ + TG+GKT A+ +PI++++ RPK + +
Sbjct: 165 GAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMI-YRPKGASCTRV- 222
Query: 469 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 528
++++PTRELA+Q ++F KL +F + GG +K+++A +R G ++VATPGRL
Sbjct: 223 -LVLVPTRELAIQVFQVFRKL-STFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRL 280
Query: 529 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588
+DH ++ + S +E LVLDEADR+L++ + + E + + + + Q++L SAT+T
Sbjct: 281 IDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNR---QTLLFSATMTE 337
Query: 589 AVQRLAGMTLQNPIQIDAADSTD 611
+ LA M+LQ P++I ++TD
Sbjct: 338 EIDELASMSLQKPVKIFINENTD 360
Score = 292 (107.8 bits), Expect = 9.0e-41, Sum P(2) = 9.0e-41
Identities = 62/172 (36%), Positives = 107/172 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +QQ I L G D+ + TG+GKT A+ +PI++++ RPK + + ++++PT
Sbjct: 172 TPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMI-YRPKGASCTRV--LVLVPT 228
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA+Q ++F KL +F + GG +K+++A +R G ++VATPGRL+DH ++
Sbjct: 229 RELAIQVFQVFRKL-STFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNS 287
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ S +E LVLDEADR+L++ + + E + + + + Q++L SAT+T
Sbjct: 288 PSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNR---QTLLFSATMT 336
Score = 228 (85.3 bits), Expect = 9.0e-41, Sum P(2) = 9.0e-41
Identities = 63/210 (30%), Positives = 107/210 (50%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
E+++ Q++L SAT+T + LA M+LQ P++I I+ TD+ + L+Q
Sbjct: 317 ELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIF------INENTDTAL---KLRQ 367
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
FI ++R V ++ +VF+ T+ ++L +LG +
Sbjct: 368 EFI----RIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQ-RMQILLGLLGIKVG- 421
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
++ S++Q +R E F+ + VL+ TD+A+RGLD+ V ++ P S Y+HR
Sbjct: 422 -QMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHR 480
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
VGRTAR G G S+ + E KL++E+ N
Sbjct: 481 VGRTARAGKAGRSISLVGEDERKLLKEIVN 510
Score = 133 (51.9 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 186 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRL 245
++ + S +E LVLDEADR+L++ + + E + + + + Q++L SAT+T + L
Sbjct: 286 NSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNR---QTLLFSATMTEEIDEL 342
Query: 246 AGMTLQNPIQIDAADSTD 263
A M+LQ P++I ++TD
Sbjct: 343 ASMSLQKPVKIFINENTD 360
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 306 (112.8 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 79/265 (29%), Positives = 140/265 (52%)
Query: 384 EALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKT 443
E + ++E G+HP + N+ + + +Q+ SI L G D++ +QTGSGKT
Sbjct: 113 EKKYENVTFESL-GVHPQIIDACNK-LGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKT 170
Query: 444 LAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTG 503
A+ IP++QKL E P+ G++ + + PTRELA Q + F + S + L G
Sbjct: 171 AAFVIPVLQKLLEA-PQ-----GLFCLALAPTRELAYQIADQFNAI-GSTIGVKTCVLVG 223
Query: 504 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 563
G S+ + K ++V +PGR+L H +HT+ +++ ++DEADR+ +E ++
Sbjct: 224 GIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEV 283
Query: 564 AEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD 623
L+++ K++ + L SAT+T V +L +L NP+++ A + T D+L+
Sbjct: 284 NNILKVIPKERNTY---LFSATMTSKVAKLQRASLVNPVKVQVASK---YQTVDTLL--- 334
Query: 624 SLKQHFIVTPPKLRLVALASFILGK 648
Q ++ P K + LA +IL +
Sbjct: 335 ---QQYLFVPFKYKDCYLA-YILNE 355
Score = 253 (94.1 bits), Expect = 9.7e-35, Sum P(2) = 9.7e-35
Identities = 57/170 (33%), Positives = 97/170 (57%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68
+Q+ SI L G D++ +QTGSGKT A+ IP++QKL E P+ G++ + + PTRE
Sbjct: 145 IQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEA-PQ-----GLFCLALAPTRE 198
Query: 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 128
LA Q + F + S + L GG S+ + K ++V +PGR+L H +HT+
Sbjct: 199 LAYQIADQFNAI-GSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLEHTKG 257
Query: 129 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+++ ++DEADR+ +E ++ L+++ K++ + L SAT+T
Sbjct: 258 FNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTY---LFSATMT 304
Score = 206 (77.6 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 48/154 (31%), Positives = 83/154 (53%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
D+L Q ++ P K + LA +IL NE + ++F +T + T++ +
Sbjct: 331 DTLLQQYLFVPFKYKDCYLA-YIL------NELAGNLTIIFTSTCASS---TKIAMMLRN 380
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
++G M Q +R F+ +L+ TDVAARGLD+P VD ++ Y P++S
Sbjct: 381 LGFGAIPINGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSK 440
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
+YVHRVGRTAR G+ G ++ + +V++ + ++
Sbjct: 441 EYVHRVGRTARAGNSGRAITIVTQYDVEMYQRIE 474
Score = 39 (18.8 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 26/148 (17%), Positives = 56/148 (37%)
Query: 212 ERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSL 271
+ D + L L K K +S+L++ + + + L + +H +
Sbjct: 391 DMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTA 450
Query: 272 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA-TQDMADYHTELLS 330
+S + IVT + + F+L K + +E +L+F+ Q+ T L
Sbjct: 451 RAGNSGRAITIVTQYDVEMYQRIEFVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELK 510
Query: 331 TXXXXXXXXEYNIDPD-NYEIPKKTEVK 357
++ D + + +I K+ +K
Sbjct: 511 DKNYSSSSDRHSGDSEGSIDINKRKVIK 538
Score = 38 (18.4 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 133 KVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQ 167
++++ LDE D +L+ + E++I EF+ ++K +
Sbjct: 76 EIKNEELDE-DSLLEKEEEEKEIEEFINNTNQKKSE 110
Score = 38 (18.4 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 542 KVEHLVLDEADRILD-QGYERDIAEFLEILKKQKPQ 576
++++ LDE D +L+ + E++I EF+ ++K +
Sbjct: 76 EIKNEELDE-DSLLEKEEEEKEIEEFINNTNQKKSE 110
Score = 37 (18.1 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 20/105 (19%), Positives = 41/105 (39%)
Query: 560 ERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSL 619
+ D + L L K K +SIL++ + + + L + +H +
Sbjct: 391 DMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTA 450
Query: 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFM 664
+S + IVT + + F+L K + +E +L+F+
Sbjct: 451 RAGNSGRAITIVTQYDVEMYQRIEFVLKKKLDSFPCQEETVLIFL 495
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 300 (110.7 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 77/207 (37%), Positives = 120/207 (57%)
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473
Q+T VQQ I L G D++ +QTG+GKT A+A+P+ L+++ K + K + A+++
Sbjct: 23 QLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPV---LEQLAAKPADKPLLRALVMT 79
Query: 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
PTRELA+Q K + F + + GG M ++ + +G+ ILVATPGRL D
Sbjct: 80 PTRELAIQVCANIQKYSQ-FLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFDIIG 138
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
L S V LV+DEADR+LD G+ RDI + ++ P Q++L SAT + AV++L
Sbjct: 139 QFN-LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIA---PVHQTMLFSATYSDAVKQL 194
Query: 594 AGMTLQNPIQIDAADSTDIHNTTDSLV 620
+ L P ++ A++T +T + LV
Sbjct: 195 SHKMLNQPQWVNVAENTTA-STVEQLV 220
Score = 273 (101.2 bits), Expect = 5.3e-37, Sum P(2) = 5.3e-37
Identities = 81/249 (32%), Positives = 130/249 (52%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
Q+T VQQ I L G D++ +QTG+GKT A+A+P+ L+++ K + K + A+++
Sbjct: 23 QLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPV---LEQLAAKPADKPLLRALVMT 79
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA+Q K + F + + GG M ++ + +G+ ILVATPGRL D
Sbjct: 80 PTRELAIQVCANIQKYSQ-FLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFDIIG 138
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWC 184
L S V LV+DEADR+LD G+ RDI + ++ P Q++L SAT + A
Sbjct: 139 QFN-LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIA---PVHQTMLFSATYSDAVKQL 194
Query: 185 KH---TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
H + + E+ ++++ + +R AE L L + Q ++ ++T A
Sbjct: 195 SHKMLNQPQWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECA 254
Query: 242 VQRLAGMTL 250
L +TL
Sbjct: 255 EHLLQELTL 263
Score = 200 (75.5 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 42/125 (33%), Positives = 73/125 (58%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
V + ++LVF +T++ A++ LL + + I+ HG +Q R V F++ K
Sbjct: 236 VGRNNWRQVLVFASTKECAEH---LLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKL 292
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
VL+ TDVAARGLD+ + ++ P + DYVHR+GRT R G G ++ F+ P++ ++
Sbjct: 293 RVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEM 352
Query: 772 VEELQ 776
+ E++
Sbjct: 353 LAEIE 357
Score = 127 (49.8 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L S V LV+DEADR+LD G+ RDI + ++ P Q++L SAT + AV++L+
Sbjct: 142 LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIA---PVHQTMLFSATYSDAVKQLSHKM 198
Query: 250 LQNPIQIDAADSTDIHNTTDSLV 272
L P ++ A++T +T + LV
Sbjct: 199 LNQPQWVNVAENTTA-STVEQLV 220
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 300 (110.7 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 77/207 (37%), Positives = 120/207 (57%)
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473
Q+T VQQ I L G D++ +QTG+GKT A+A+P+ L+++ K + K + A+++
Sbjct: 23 QLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPV---LEQLAAKPADKPLLRALVMT 79
Query: 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
PTRELA+Q K + F + + GG M ++ + +G+ ILVATPGRL D
Sbjct: 80 PTRELAIQVCANIQKYSQ-FLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFDIIG 138
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
L S V LV+DEADR+LD G+ RDI + ++ P Q++L SAT + AV++L
Sbjct: 139 QFN-LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIA---PVHQTMLFSATYSDAVKQL 194
Query: 594 AGMTLQNPIQIDAADSTDIHNTTDSLV 620
+ L P ++ A++T +T + LV
Sbjct: 195 SHKMLNQPQWVNVAENTTA-STVEQLV 220
Score = 273 (101.2 bits), Expect = 5.3e-37, Sum P(2) = 5.3e-37
Identities = 81/249 (32%), Positives = 130/249 (52%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
Q+T VQQ I L G D++ +QTG+GKT A+A+P+ L+++ K + K + A+++
Sbjct: 23 QLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPV---LEQLAAKPADKPLLRALVMT 79
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA+Q K + F + + GG M ++ + +G+ ILVATPGRL D
Sbjct: 80 PTRELAIQVCANIQKYSQ-FLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFDIIG 138
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWC 184
L S V LV+DEADR+LD G+ RDI + ++ P Q++L SAT + A
Sbjct: 139 QFN-LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIA---PVHQTMLFSATYSDAVKQL 194
Query: 185 KH---TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
H + + E+ ++++ + +R AE L L + Q ++ ++T A
Sbjct: 195 SHKMLNQPQWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECA 254
Query: 242 VQRLAGMTL 250
L +TL
Sbjct: 255 EHLLQELTL 263
Score = 200 (75.5 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 42/125 (33%), Positives = 73/125 (58%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
V + ++LVF +T++ A++ LL + + I+ HG +Q R V F++ K
Sbjct: 236 VGRNNWRQVLVFASTKECAEH---LLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKL 292
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
VL+ TDVAARGLD+ + ++ P + DYVHR+GRT R G G ++ F+ P++ ++
Sbjct: 293 RVLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEM 352
Query: 772 VEELQ 776
+ E++
Sbjct: 353 LAEIE 357
Score = 127 (49.8 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L S V LV+DEADR+LD G+ RDI + ++ P Q++L SAT + AV++L+
Sbjct: 142 LDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIA---PVHQTMLFSATYSDAVKQLSHKM 198
Query: 250 LQNPIQIDAADSTDIHNTTDSLV 272
L P ++ A++T +T + LV
Sbjct: 199 LNQPQWVNVAENTTA-STVEQLV 220
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 309 (113.8 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 75/206 (36%), Positives = 118/206 (57%)
Query: 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
+P K + +G + T +Q+ +I ILDG DV+ ++TGSGKT + IP+ ++L+
Sbjct: 105 YPVFKGIMKKGYKVP--TPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFERLKTH- 161
Query: 459 PKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGI 518
S + G A+I+ PTRELALQT++ FTK FT + + + GG+KM+ + A + +
Sbjct: 162 ---SAQTGARALILSPTRELALQTMK-FTKELGKFTGLKTALILGGDKMEDQFAALHENP 217
Query: 519 SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQ 578
I++ATPGRL+ H LK VE++V DEADR+ + G+ + E I+ + Q
Sbjct: 218 DIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQE---IIGRLPGGHQ 273
Query: 579 SILLSATLTPAVQRLAGMTLQNPIQI 604
++L SATL + A L P+ I
Sbjct: 274 TVLFSATLPKLLVEFARAGLTEPVLI 299
Score = 292 (107.8 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 68/171 (39%), Positives = 105/171 (61%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ +I ILDG DV+ ++TGSGKT + IP+ ++L+ S + G A+I+ PT
Sbjct: 120 TPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFERLKTH----SAQTGARALILSPT 175
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQT++ FTK FT + + + GG+KM+ + A + + I++ATPGRL+ H
Sbjct: 176 RELALQTMK-FTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVE 233
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LK VE++V DEADR+ + G+ + E I+ + Q++L SATL
Sbjct: 234 MNLKLQSVEYVVFDEADRLFEMGFAEQLQE---IIGRLPGGHQTVLFSATL 281
Score = 209 (78.6 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 51/153 (33%), Positives = 88/153 (57%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ LK F + +R A A+ +L +NV ++ + +VF+AT+ A+Y +ELL+T
Sbjct: 309 EQLKTSFFL----VREDAKAAVLLHLLRNVVRPQD-QTVVFVATKHHAEYLSELLAT--- 360
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+ ++ ++ ++ Q+ R F K LI TD+AARGLD+PL+D ++ Y+ P+
Sbjct: 361 QGVSCAHIYSALDQTARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGK 420
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
++HRVGR AR G G++ + P EV + +L
Sbjct: 421 LFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDL 453
Score = 98 (39.6 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 46/165 (27%), Positives = 76/165 (46%)
Query: 96 EKMKSEKARIRKGISILVATPGR--LLDHCKHTETL-KFSKVEHLVLDEADRILDQGYER 152
E++K+ A+ G L+ +P R L K T+ L KF+ ++ ++ D++ DQ
Sbjct: 156 ERLKTHSAQT--GARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQ---- 209
Query: 153 DIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTE-TLKFSKVEHLVLDEADRILDQGY 211
F + + P I+++ TP E LK VE++V DEADR+ + G+
Sbjct: 210 ----FAAL--HENPD---IIIA---TPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGF 257
Query: 212 ERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+ E I+ + Q+VL SATL + A L P+ I
Sbjct: 258 AEQLQE---IIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLI 299
>CGD|CAL0005900 [details] [associations]
symbol:MAK5 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0005900 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
RefSeq:XP_714899.1 RefSeq:XP_714962.1 ProteinModelPortal:Q59ZH9
STRING:Q59ZH9 GeneID:3643358 GeneID:3643454 KEGG:cal:CaO19.11024
KEGG:cal:CaO19.3540 Uniprot:Q59ZH9
Length = 782
Score = 264 (98.0 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 90/317 (28%), Positives = 149/317 (47%)
Query: 539 KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ-------FQSILLSATLTPAVQ 591
+ + ++ +VLDEADR+L G+ + + LE+ K +P+ +Q+++ SAT + +
Sbjct: 354 RLASIDIIVLDEADRLLQDGHFDEFEKILELFGKNRPKSKSIEWKWQTLVFSATFSRDLF 413
Query: 592 RLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQN 651
R + + + + L D K + PK + + L +C
Sbjct: 414 RKLDRHQKGKSSSLMGNDEIVQLLNEKLKFKDK-KPTLVDANPKEIVSGQITEALVECGP 472
Query: 652 VNED---------EESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702
D + LVF + D LL+ + NI F +H SM Q +R
Sbjct: 473 TERDLYLYYFLLMYKGSTLVFANSIDSVKRLVPLLNNL---NIPAFSIHSSMIQKQRLRA 529
Query: 703 FKTFR--SVKS--GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEG 758
+ F+ S K+ VL+ +DVAARGLD+P +D +V Y P S+ Y+HR GRTAR G EG
Sbjct: 530 LEKFKEASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGKEG 589
Query: 759 SSLLFLIPSEV--------KLVEELQNRRIRIE---EIKLKDCLQNLLS-VKMEGDLS-R 805
S +F P E +LV N+ R+ ++KL +L+S +K ++S +
Sbjct: 590 VSAMFCSPQEASGPLRKLRRLVAGNSNKESRLNMHNDVKLLPIEMDLVSQIKPRVEISSK 649
Query: 806 LADGNVETAATALQMSF 822
LAD ++ + AT + S+
Sbjct: 650 LADASISSTATRKEDSW 666
Score = 254 (94.5 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 67/183 (36%), Positives = 107/183 (58%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK-LQEMRP-KISRKDGI 58
++ + T +Q+ +I L G DV+ ++ TGSGKTLAY IPI++K +Q + K + KD
Sbjct: 215 LDFKKPTPIQKETIPIALSGKDVIGKATTGSGKTLAYGIPILEKYIQSLNLIKQNNKDKK 274
Query: 59 Y----AVIILPTRELALQTLEIFTKLCK----SFTWIVPSWLTGGEKMKSEKARIRKGIS 110
+I PTRELA Q ++ KL K S IV +TGG ++ ++ +R G
Sbjct: 275 INHPTGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVS--ITGGLSIQKQQRLLRHGPG 332
Query: 111 ILVATPGRLLDHCKHTETL--KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 168
I+VATPGR+L+ + L + + ++ +VLDEADR+L G+ + + LE+ K +P+
Sbjct: 333 IIVATPGRMLELVQGDSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELFGKNRPKS 392
Query: 169 QSI 171
+SI
Sbjct: 393 KSI 395
Score = 254 (94.5 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 67/183 (36%), Positives = 107/183 (58%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK-LQEMRP-KISRKDGI 467
++ + T +Q+ +I L G DV+ ++ TGSGKTLAY IPI++K +Q + K + KD
Sbjct: 215 LDFKKPTPIQKETIPIALSGKDVIGKATTGSGKTLAYGIPILEKYIQSLNLIKQNNKDKK 274
Query: 468 Y----AVIILPTRELALQTLEIFTKLCK----SFTWIVPSWLTGGEKMKSEKARIRKGIS 519
+I PTRELA Q ++ KL K S IV +TGG ++ ++ +R G
Sbjct: 275 INHPTGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVS--ITGGLSIQKQQRLLRHGPG 332
Query: 520 ILVATPGRLLDHCKHTETL--KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 577
I+VATPGR+L+ + L + + ++ +VLDEADR+L G+ + + LE+ K +P+
Sbjct: 333 IIVATPGRMLELVQGDSELAKRLASIDIIVLDEADRLLQDGHFDEFEKILELFGKNRPKS 392
Query: 578 QSI 580
+SI
Sbjct: 393 KSI 395
Score = 57 (25.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 27/100 (27%), Positives = 50/100 (50%)
Query: 158 LEILKKQKPQFQ--SILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDI 215
++++ + KP+ + S L A+++ +T K +K E L LD+ + D +E DI
Sbjct: 634 MDLVSQIKPRVEISSKLADASIS-STATRKEDSWVK-QAAEDLGLDDLSGLED--FEDDI 689
Query: 216 AEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQ 255
+KKQ+ + + +LS T A++ L NPI+
Sbjct: 690 ------IKKQRKRKEGKMLSKDETKALKYELKTLLANPIK 723
Score = 47 (21.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+I+KKQ+ + + +LS T A++ L NPI+
Sbjct: 688 DIIKKQRKRKEGKMLSKDETKALKYELKTLLANPIK 723
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 308 (113.5 bits), Expect = 3.1e-40, Sum P(2) = 3.1e-40
Identities = 74/206 (35%), Positives = 119/206 (57%)
Query: 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
+P K + +G + T +Q+ +I ILDG DV+ ++TGSGKT + +P+ ++L+
Sbjct: 105 YPVFKGIMKKGYKVP--TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161
Query: 459 PKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGI 518
S + G A+I+ PTRELALQTL+ FTK FT + + + GG++M+ + A + +
Sbjct: 162 ---SAQTGARALILSPTRELALQTLK-FTKELGKFTGLKTALILGGDRMEDQFAALHENP 217
Query: 519 SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQ 578
I++ATPGRL+ H +LK VE++V DEADR+ + G+ + E I+ + Q
Sbjct: 218 DIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQE---IIARLPGGHQ 273
Query: 579 SILLSATLTPAVQRLAGMTLQNPIQI 604
++L SATL + A L P+ I
Sbjct: 274 TVLFSATLPKLLVEFARAGLTEPVLI 299
Score = 291 (107.5 bits), Expect = 2.3e-38, Sum P(2) = 2.3e-38
Identities = 67/171 (39%), Positives = 106/171 (61%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ +I ILDG DV+ ++TGSGKT + +P+ ++L+ S + G A+I+ PT
Sbjct: 120 TPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH----SAQTGARALILSPT 175
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQTL+ FTK FT + + + GG++M+ + A + + I++ATPGRL+ H
Sbjct: 176 RELALQTLK-FTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVE 233
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
+LK VE++V DEADR+ + G+ + E I+ + Q++L SATL
Sbjct: 234 MSLKLQSVEYVVFDEADRLFEMGFAEQLQE---IIARLPGGHQTVLFSATL 281
Score = 209 (78.6 bits), Expect = 3.1e-40, Sum P(2) = 3.1e-40
Identities = 61/205 (29%), Positives = 107/205 (52%)
Query: 642 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701
A+ +L NV ++ + +VF+AT+ A+Y TELL+T + ++ ++ ++ + R
Sbjct: 324 AAVLLHLLHNVVRPQD-QTVVFVATKHHAEYLTELLTT---QRVSCAHIYSALDPTARKI 379
Query: 702 VFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSL 761
F K LI TD+AARGLD+PL+D ++ Y+ P+ ++HRVGR AR G G++
Sbjct: 380 NLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAY 439
Query: 762 LFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVK-MEGDLSRLADGNVETAATALQM 820
+ P E+ + +L R + L L+ V ++G L R+ V+ + LQ
Sbjct: 440 SLVAPDEIPYLLDLHLFLGR--SLTLARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQS 497
Query: 821 SFESAVLQQKILHTSACKGYTSWVR 845
+ E++ L+ + L A +VR
Sbjct: 498 TLEAS-LELRGLARVADNAQQQYVR 521
Score = 103 (41.3 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 47/165 (28%), Positives = 77/165 (46%)
Query: 96 EKMKSEKARIRKGISILVATPGR--LLDHCKHTETL-KFSKVEHLVLDEADRILDQGYER 152
E++K+ A+ G L+ +P R L K T+ L KF+ ++ ++ DR+ DQ
Sbjct: 156 ERLKTHSAQT--GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQ---- 209
Query: 153 DIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTE-TLKFSKVEHLVLDEADRILDQGY 211
F + + P I+++ TP E +LK VE++V DEADR+ + G+
Sbjct: 210 ----FAAL--HENPD---IIIA---TPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGF 257
Query: 212 ERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+ E I+ + Q+VL SATL + A L P+ I
Sbjct: 258 AEQLQE---IIARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLI 299
Score = 47 (21.6 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 634 PKLRLVALASFILGKCQNV 652
P R + LA F LGKC +
Sbjct: 374 PTARKINLAKFTLGKCSTL 392
Score = 47 (21.6 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 286 PKLRLVALASFILGKCQNV 304
P R + LA F LGKC +
Sbjct: 374 PTARKINLAKFTLGKCSTL 392
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 315 (115.9 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 90/299 (30%), Positives = 160/299 (53%)
Query: 369 PDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILD 428
P+ + PT +P+ E T +++ G+ + + ++ + T+ T +Q +I L
Sbjct: 4 PEEHDSPTEASQPIVEEEETKT-FKDL-GVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQ 60
Query: 429 GGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTK 488
G D++ ++TGSGKT A+A+PI+ L E ++ +A+++ PTRELA Q E F
Sbjct: 61 GRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEA 114
Query: 489 LCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVL 548
L S + + + GG S+ + K I++ATPGRL+DH ++T+ +++LV+
Sbjct: 115 LGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 173
Query: 549 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAAD 608
DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+L L+NP++ A
Sbjct: 174 DEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQKLQRAALKNPVKC-AVS 229
Query: 609 STDIHNTTDSL-----VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 662
S + T + L IP K ++V L +A SF++ C N + + +L+
Sbjct: 230 SK--YQTVEKLQQYYIFIPSKFKDTYLVYI--LNELAGNSFMIF-CSTCNNTQRTALLL 283
Score = 267 (99.0 bits), Expect = 3.7e-40, Sum P(2) = 3.7e-40
Identities = 62/175 (35%), Positives = 104/175 (59%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
T+ T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++
Sbjct: 45 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVL 98
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 123
PTRELA Q E F L S + + + GG S+ + K I++ATPGRL+DH
Sbjct: 99 TPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHL 157
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T
Sbjct: 158 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMT 209
Score = 237 (88.5 bits), Expect = 3.7e-40, Sum P(2) = 3.7e-40
Identities = 56/155 (36%), Positives = 87/155 (56%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ L+Q++I P K + L +IL NE + ++F +T + T LL LG
Sbjct: 236 EKLQQYYIFIPSKFKDTYLV-YIL------NELAGNSFMIFCSTCNNTQ-RTALLLRNLG 287
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
LHG MSQS+R F++ +L+ TDVA+RGLD+P VD +V + P+ S
Sbjct: 288 --FTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK 345
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
DY+HRVGRTAR G G ++ F+ +V+L + +++
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Score = 133 (51.9 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 39/135 (28%), Positives = 72/135 (53%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 158 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQK 214
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSL-----VIPDSLKQHFIVTPPKLRLVALASFILG 299
L L+NP++ A S + T + L IP K ++V L +A SF++
Sbjct: 215 LQRAALKNPVKC-AVSSK--YQTVEKLQQYYIFIPSKFKDTYLVYI--LNELAGNSFMIF 269
Query: 300 KCQNVNEDEESKMLV 314
C N + + +L+
Sbjct: 270 -CSTCNNTQRTALLL 283
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 477 (173.0 bits), Expect = 4.5e-40, Sum P(3) = 4.5e-40
Identities = 123/396 (31%), Positives = 210/396 (53%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
+ +T++Q +I I+ G DV+ ++TGSGKT+A+ IP+ + +++ RP + +G
Sbjct: 559 LGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRP-LENMEGPIG 617
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLT---GGEKMKSEKARIRKGISILVATPG 526
+I+ PTRELA Q K CK F + GG +K + A +++G I+V TPG
Sbjct: 618 LIMTPTRELATQ----IHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPG 673
Query: 527 RLLD--HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584
R++D +V ++VLDEADR+ D G+E + ++IL +P Q++L SA
Sbjct: 674 RMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQV---MKILSNVRPDRQTVLFSA 730
Query: 585 TLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASF 644
T ++ LA TL PI+I S+V P+ + Q V + + V L
Sbjct: 731 TFPRNMEALARKTLTKPIEIVVGGR--------SVVAPE-ITQIVEVCNEEKKFVRLLE- 780
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704
+LG + +E+E+++ L+F+ Q+ AD LL ++ + +HG Q +R +
Sbjct: 781 LLGNLYSTDENEDARSLIFVDRQEAAD---TLLRELMRKGYPCMSIHGGKDQIDRDSTIE 837
Query: 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
F++ VLI T VAARGLD+ + +V Y AP+ DYVHR GRT R G+ G+++ FL
Sbjct: 838 DFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFL 897
Query: 765 IPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKME 800
+ + ++ + ++ ++ + +Q L+ +E
Sbjct: 898 TEDQERYSVDIA-KALKQSGQEVPEAVQKLVDSFLE 932
Score = 262 (97.3 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 62/181 (34%), Positives = 102/181 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ +T++Q +I I+ G DV+ ++TGSGKT+A+ IP+ + +++ RP + +G
Sbjct: 559 LGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRP-LENMEGPIG 617
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLT---GGEKMKSEKARIRKGISILVATPG 117
+I+ PTRELA Q K CK F + GG +K + A +++G I+V TPG
Sbjct: 618 LIMTPTRELATQ----IHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPG 673
Query: 118 RLLD--HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175
R++D +V ++VLDEADR+ D G+E + ++IL +P Q++L SA
Sbjct: 674 RMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQV---MKILSNVRPDRQTVLFSA 730
Query: 176 T 176
T
Sbjct: 731 T 731
Score = 151 (58.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 43/130 (33%), Positives = 71/130 (54%)
Query: 194 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNP 253
+V ++VLDEADR+ D G+E + ++IL +P Q+VL SAT ++ LA TL P
Sbjct: 691 RVTYVVLDEADRMFDMGFEPQV---MKILSNVRPDRQTVLFSATFPRNMEALARKTLTKP 747
Query: 254 IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKML 313
I+I S+V P+ + Q V + + V L +LG + +E+E+++ L
Sbjct: 748 IEIVVGGR--------SVVAPE-ITQIVEVCNEEKKFVRLLE-LLGNLYSTDENEDARSL 797
Query: 314 VFMATQDMAD 323
+F+ Q+ AD
Sbjct: 798 IFVDRQEAAD 807
Score = 41 (19.5 bits), Expect = 4.5e-40, Sum P(3) = 4.5e-40
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 130 KFSKV---EHLVLDEADRILDQGYERDIAEFLEILKKQK 165
KFSK E + DE D + E D +FL I K K
Sbjct: 444 KFSKAQEPEAIFGDEHDVSMTAVGEGDAEDFLAIASKAK 482
Score = 41 (19.5 bits), Expect = 4.5e-40, Sum P(3) = 4.5e-40
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 191 KFSKV---EHLVLDEADRILDQGYERDIAEFLEILKKQK 226
KFSK E + DE D + E D +FL I K K
Sbjct: 444 KFSKAQEPEAIFGDEHDVSMTAVGEGDAEDFLAIASKAK 482
Score = 38 (18.4 bits), Expect = 4.5e-40, Sum P(3) = 4.5e-40
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDG 429
PF +K E ++ Q++ + +++ LDG
Sbjct: 499 PFRRKFYTEPSDLAQMSEEEAANLRLELDG 528
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 315 (115.9 bits), Expect = 6.1e-40, Sum P(2) = 6.1e-40
Identities = 72/225 (32%), Positives = 129/225 (57%)
Query: 398 IHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM 457
IHP + + + + + T +Q +I ++ G DV+ +QTG+GKT A+AIP++ K+ ++
Sbjct: 20 IHPRVLRAIGD-VGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKI-DI 77
Query: 458 RPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKG 517
K+ + A++++PTRELALQ E F + + + + GG + A +R+G
Sbjct: 78 TSKVPQ-----ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRG 132
Query: 518 ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF 577
++V TPGR++DH + TL S+V+ LVLDEAD +L G+ D+ L + P++
Sbjct: 133 AQVVVGTPGRMIDHLERA-TLDLSRVDFLVLDEADEMLTMGFADDVERILS----ETPEY 187
Query: 578 QSI-LLSATLTPAVQRLAGMTLQNPIQIDAADSTDI-HNTTDSLV 620
+ + L SAT+ PA+++L+ L +P ++ T + N + S +
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI 232
Score = 278 (102.9 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 63/175 (36%), Positives = 105/175 (60%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I ++ G DV+ +QTG+GKT A+AIP++ K+ ++ K+ + A++++PT
Sbjct: 37 TAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKI-DITSKVPQ-----ALVLVPT 90
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ E F + + + + GG + A +R+G ++V TPGR++DH +
Sbjct: 91 RELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERA 150
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSI-LLSATLTPA 180
TL S+V+ LVLDEAD +L G+ D+ L + P+++ + L SAT+ PA
Sbjct: 151 -TLDLSRVDFLVLDEADEMLTMGFADDVERILS----ETPEYKQVALFSATMPPA 200
Score = 189 (71.6 bits), Expect = 6.1e-40, Sum P(2) = 6.1e-40
Identities = 39/129 (30%), Positives = 69/129 (53%)
Query: 660 MLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDV 719
M+VF+ T+ + E+ + + + G + Q++R R +L+ TDV
Sbjct: 253 MIVFVRTKQATE---EIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309
Query: 720 AARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR- 778
AARGLD+ + ++ Y P + YVHR+GRT R G G++L+F+ P E+ L++ ++
Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369
Query: 779 RIRIEEIKL 787
R + E +L
Sbjct: 370 RQTLTEAQL 378
Score = 128 (50.1 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 186 HTE--TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSV-LLSATLTPAV 242
H E TL S+V+ LVLDEAD +L G+ D+ L + P+++ V L SAT+ PA+
Sbjct: 146 HLERATLDLSRVDFLVLDEADEMLTMGFADDVERILS----ETPEYKQVALFSATMPPAI 201
Query: 243 QRLAGMTLQNPIQIDAADSTDI-HNTTDSLV 272
++L+ L +P ++ T + N + S +
Sbjct: 202 RKLSAKYLHDPFEVTCKAKTAVAENISQSYI 232
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 308 (113.5 bits), Expect = 2.4e-24, P = 2.4e-24
Identities = 84/269 (31%), Positives = 148/269 (55%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
TS++E G+ + + ++ + + T +Q +I L G DV+ ++TGSGKT A+A+P
Sbjct: 79 TSFKEL-GVTEVLCEACDQ-LGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVP 136
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
++Q L ++ ++ +++ PTRELA Q E F L S + + + GG M S
Sbjct: 137 VLQSL------LACAQRLHTLVLTPTRELAFQIAEQFDALGSSIG-VKTAVIVGGIDMMS 189
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ + K +++ATPGRL+DH ++T+ +++LV+DEADRIL+ +E ++ + L++
Sbjct: 190 QALVLAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKV 249
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSL-----VIPDS 624
+ + + F L SAT+T VQ+L LQ+P++ + + T D L IP
Sbjct: 250 IPRDRRTF---LFSATMTKKVQKLQRAALQDPVKCSVSSK---YATVDKLQQFYIFIPSK 303
Query: 625 LKQHFIVTPPKLRLVALASFIL--GKCQN 651
K ++V+ L +A SF++ G C N
Sbjct: 304 YKDCYLVSI--LNELAGNSFMVFCGTCNN 330
Score = 263 (97.6 bits), Expect = 6.3e-40, Sum P(2) = 6.3e-40
Identities = 60/172 (34%), Positives = 103/172 (59%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I L G DV+ ++TGSGKT A+A+P++Q L ++ ++ +++ PT
Sbjct: 103 TKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSL------LACAQRLHTLVLTPT 156
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E F L S + + + GG M S+ + K +++ATPGRL+DH ++T
Sbjct: 157 RELAFQIAEQFDALGSSIG-VKTAVIVGGIDMMSQALVLAKKPHVVIATPGRLIDHMENT 215
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T
Sbjct: 216 KGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTF---LFSATMT 264
Score = 243 (90.6 bits), Expect = 6.3e-40, Sum P(2) = 6.3e-40
Identities = 58/154 (37%), Positives = 83/154 (53%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
D L+Q +I P K + L S + NE + +VF T + LL LG
Sbjct: 291 DKLQQFYIFIPSKYKDCYLVSIL-------NELAGNSFMVFCGTCNNTQ-RVALLLRNLG 342
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
I LHG MSQ++R F+S VL+ TDVA+RGLD+P VD ++ + P+ S
Sbjct: 343 --ITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSK 400
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
DY+HRVGRTAR G G S+ F+ +V+L + ++
Sbjct: 401 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIE 434
Score = 133 (51.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 38/126 (30%), Positives = 68/126 (53%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 213 ENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTF---LFSATMTKKVQK 269
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSL-----VIPDSLKQHFIVTPPKLRLVALASFIL- 298
L LQ+P++ + + T D L IP K ++V+ L +A SF++
Sbjct: 270 LQRAALQDPVKCSVSSK---YATVDKLQQFYIFIPSKYKDCYLVSI--LNELAGNSFMVF 324
Query: 299 -GKCQN 303
G C N
Sbjct: 325 CGTCNN 330
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 309 (113.8 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 76/215 (35%), Positives = 121/215 (56%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
GI P + K L +G I ++ +Q+ ++P ++G D++ R++TG+GKTLA+ IPII K+ +
Sbjct: 122 GISPEIVKAL-KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 180
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
K R +++ PTRELA Q + F + S I L GG + + +
Sbjct: 181 FNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC---LYGGTPIGQQMRELNY 237
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
GI + V TPGR++D K L S+V+ +VLDEAD++L G+ D+ E IL+K +
Sbjct: 238 GIDVAVGTPGRIIDLMKRG-ALNLSEVQFVVLDEADQMLQVGFAEDV-EI--ILQKLPAK 293
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTD 611
QS++ SAT+ ++ L L NP+ ID +D
Sbjct: 294 RQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSD 328
Score = 264 (98.0 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 72/211 (34%), Positives = 118/211 (55%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 62
I ++ +Q+ ++P ++G D++ R++TG+GKTLA+ IPII K+ + K R ++
Sbjct: 136 IEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLV 195
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
+ PTRELA Q + F + S I L GG + + + GI + V TPGR++D
Sbjct: 196 LAPTRELARQVEKEFRESAPSLDTIC---LYGGTPIGQQMRELNYGIDVAVGTPGRIIDL 252
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATC 182
K L S+V+ +VLDEAD++L G+ D+ E IL+K + QS++ SAT+ P+
Sbjct: 253 MKRG-ALNLSEVQFVVLDEADQMLQVGFAEDV-EI--ILQKLPAKRQSMMFSATM-PS-- 305
Query: 183 WCKHTETLKFSKVEHLVLD---EADRILDQG 210
W + T K+ L +D ++D+ L G
Sbjct: 306 WIRSL-TKKYLN-NPLTIDLVGDSDQKLADG 334
Score = 196 (74.1 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 43/118 (36%), Positives = 68/118 (57%)
Query: 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
K +VF T+ AD L+ L ++ LHG +SQ++R FR +L+ TD
Sbjct: 363 KCIVFTQTKRDADR----LAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATD 418
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
VAARGLD+P VD ++ Y P+++ +VHR GRT R G +GS++L + + V+ ++
Sbjct: 419 VAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIE 476
Score = 115 (45.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L S+V+ +VLDEAD++L G+ D+ E IL+K + QS++ SAT+ ++ L
Sbjct: 258 LNLSEVQFVVLDEADQMLQVGFAEDV-EI--ILQKLPAKRQSMMFSATMPSWIRSLTKKY 314
Query: 250 LQNPIQIDAADSTD 263
L NP+ ID +D
Sbjct: 315 LNNPLTIDLVGDSD 328
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 320 (117.7 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 78/210 (37%), Positives = 126/210 (60%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
G+H + K + E + T +Q +I IL G +VL +QTG+GKT ++ +P++ + +
Sbjct: 7 GLHSALVKAVTE-LGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFAD 65
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
PKI R + ++I+ PTRELALQ + + K + + + GG +K R+ +
Sbjct: 66 A-PKI-RPKRVRSIILTPTRELALQVEQNINQYAK-YLPLTAMAMYGGVDAAPQKKRLIE 122
Query: 517 GISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 575
G+ +LVATPGRLLD +T+ ++F +V LVLDEADR+LD G+ DI +E L +Q+
Sbjct: 123 GVDLLVATPGRLLD--MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR- 179
Query: 576 QFQSILLSATLTPAVQRLAGMTLQNPIQID 605
Q++L SATL+ V+ LA + + I+I+
Sbjct: 180 --QNLLFSATLSKQVKALAKTAIPDAIEIE 207
Score = 289 (106.8 bits), Expect = 8.5e-36, Sum P(2) = 8.5e-36
Identities = 69/173 (39%), Positives = 108/173 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I IL G +VL +QTG+GKT ++ +P++ + + PKI R + ++I+ PT
Sbjct: 25 TPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFADA-PKI-RPKRVRSIILTPT 82
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ + + K + + + GG +K R+ +G+ +LVATPGRLLD +T
Sbjct: 83 RELALQVEQNINQYAK-YLPLTAMAMYGGVDAAPQKKRLIEGVDLLVATPGRLLD--MYT 139
Query: 127 E-TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ ++F +V LVLDEADR+LD G+ DI +E L +Q+ Q++L SATL+
Sbjct: 140 QRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR---QNLLFSATLS 189
Score = 172 (65.6 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 37/135 (27%), Positives = 73/135 (54%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+ E+ ++ L+F+ T+ A +L+S + I H SQ+ R ++ F++ K
Sbjct: 238 IKENNWAQALIFIQTKHGA---AKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKV 294
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
L+ T V +RG+D+ ++ ++ Y P + DY+HR+GRT R G++G ++ F+ + +
Sbjct: 295 PFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRN 354
Query: 772 VEELQNRRIRIEEIK 786
+ ++ R I E K
Sbjct: 355 LCAIERRLGHIIERK 369
Score = 130 (50.8 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 178 TPATCWCKHTE-TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP +T+ ++F +V LVLDEADR+LD G+ DI +E L +Q+ Q++L SA
Sbjct: 130 TPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR---QNLLFSA 186
Query: 237 TLTPAVQRLAGMTLQNPIQID 257
TL+ V+ LA + + I+I+
Sbjct: 187 TLSKQVKALAKTAIPDAIEIE 207
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 320 (117.7 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 78/210 (37%), Positives = 126/210 (60%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
G+H + K + E + T +Q +I IL G +VL +QTG+GKT ++ +P++ + +
Sbjct: 7 GLHSALVKAVTE-LGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFAD 65
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
PKI R + ++I+ PTRELALQ + + K + + + GG +K R+ +
Sbjct: 66 A-PKI-RPKRVRSIILTPTRELALQVEQNINQYAK-YLPLTAMAMYGGVDAAPQKKRLIE 122
Query: 517 GISILVATPGRLLDHCKHTE-TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 575
G+ +LVATPGRLLD +T+ ++F +V LVLDEADR+LD G+ DI +E L +Q+
Sbjct: 123 GVDLLVATPGRLLD--MYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR- 179
Query: 576 QFQSILLSATLTPAVQRLAGMTLQNPIQID 605
Q++L SATL+ V+ LA + + I+I+
Sbjct: 180 --QNLLFSATLSKQVKALAKTAIPDAIEIE 207
Score = 289 (106.8 bits), Expect = 8.5e-36, Sum P(2) = 8.5e-36
Identities = 69/173 (39%), Positives = 108/173 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I IL G +VL +QTG+GKT ++ +P++ + + PKI R + ++I+ PT
Sbjct: 25 TPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFADA-PKI-RPKRVRSIILTPT 82
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ + + K + + + GG +K R+ +G+ +LVATPGRLLD +T
Sbjct: 83 RELALQVEQNINQYAK-YLPLTAMAMYGGVDAAPQKKRLIEGVDLLVATPGRLLD--MYT 139
Query: 127 E-TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ ++F +V LVLDEADR+LD G+ DI +E L +Q+ Q++L SATL+
Sbjct: 140 QRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR---QNLLFSATLS 189
Score = 172 (65.6 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 37/135 (27%), Positives = 73/135 (54%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+ E+ ++ L+F+ T+ A +L+S + I H SQ+ R ++ F++ K
Sbjct: 238 IKENNWAQALIFIQTKHGA---AKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKV 294
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKL 771
L+ T V +RG+D+ ++ ++ Y P + DY+HR+GRT R G++G ++ F+ + +
Sbjct: 295 PFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRN 354
Query: 772 VEELQNRRIRIEEIK 786
+ ++ R I E K
Sbjct: 355 LCAIERRLGHIIERK 369
Score = 130 (50.8 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 178 TPATCWCKHTE-TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP +T+ ++F +V LVLDEADR+LD G+ DI +E L +Q+ Q++L SA
Sbjct: 130 TPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR---QNLLFSA 186
Query: 237 TLTPAVQRLAGMTLQNPIQID 257
TL+ V+ LA + + I+I+
Sbjct: 187 TLSKQVKALAKTAIPDAIEIE 207
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 309 (113.8 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 80/252 (31%), Positives = 136/252 (53%)
Query: 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472
T+ T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++
Sbjct: 71 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVL 124
Query: 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 532
PTRELA Q E F L S + + + GG S+ + K I++ATPGRL+DH
Sbjct: 125 TPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHL 183
Query: 533 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQR 592
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 184 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQK 240
Query: 593 LAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 650
L L+NP++ + L IP K ++V L +A SF++ C
Sbjct: 241 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CS 297
Query: 651 NVNEDEESKMLV 662
N + + +L+
Sbjct: 298 TCNNTQRTALLL 309
Score = 266 (98.7 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 62/175 (35%), Positives = 104/175 (59%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
T+ T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++
Sbjct: 71 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVL 124
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 123
PTRELA Q E F L S + + + GG S+ + K I++ATPGRL+DH
Sbjct: 125 TPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHL 183
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T
Sbjct: 184 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMT 235
Score = 235 (87.8 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 55/155 (35%), Positives = 87/155 (56%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ L+Q+++ P K + L +IL NE + ++F +T + T LL LG
Sbjct: 262 EKLQQYYLFIPSKFKDTYLV-YIL------NELAGNSFMIFCSTCNNTQ-RTALLLRNLG 313
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
LHG MSQS+R F++ +L+ TDVA+RGLD+P VD +V + P+ S
Sbjct: 314 --FTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK 371
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
DY+HRVGRTAR G G ++ F+ +V+L + +++
Sbjct: 372 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 406
Score = 134 (52.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 36/132 (27%), Positives = 68/132 (51%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 184 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQK 240
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 302
L L+NP++ + L IP K ++V L +A SF++ C
Sbjct: 241 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CS 297
Query: 303 NVNEDEESKMLV 314
N + + +L+
Sbjct: 298 TCNNTQRTALLL 309
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 307 (113.1 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 80/252 (31%), Positives = 136/252 (53%)
Query: 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472
T+ T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++
Sbjct: 47 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVL 100
Query: 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 532
PTRELA Q E F L S + + + GG S+ + K I++ATPGRL+DH
Sbjct: 101 TPTRELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHL 159
Query: 533 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQR 592
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 160 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQK 216
Query: 593 LAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 650
L L+NP++ + L IP K ++V L +A SF++ C
Sbjct: 217 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CS 273
Query: 651 NVNEDEESKMLV 662
N + + +L+
Sbjct: 274 TCNNTQRTALLL 285
Score = 264 (98.0 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 62/175 (35%), Positives = 104/175 (59%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
T+ T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++
Sbjct: 47 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVL 100
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 123
PTRELA Q E F L S + + + GG S+ + K I++ATPGRL+DH
Sbjct: 101 TPTRELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHL 159
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T
Sbjct: 160 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMT 211
Score = 235 (87.8 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 55/155 (35%), Positives = 87/155 (56%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ L+Q+++ P K + L +IL NE + ++F +T + T LL LG
Sbjct: 238 EKLQQYYLFIPSKFKDTYLV-YIL------NELAGNSFMIFCSTCNNTQ-RTALLLRNLG 289
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
LHG MSQS+R F++ +L+ TDVA+RGLD+P VD +V + P+ S
Sbjct: 290 --FTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK 347
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
DY+HRVGRTAR G G ++ F+ +V+L + +++
Sbjct: 348 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 382
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 36/132 (27%), Positives = 68/132 (51%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 160 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQK 216
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 302
L L+NP++ + L IP K ++V L +A SF++ C
Sbjct: 217 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CS 273
Query: 303 NVNEDEESKMLV 314
N + + +L+
Sbjct: 274 TCNNTQRTALLL 285
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 299 (110.3 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 85/240 (35%), Positives = 128/240 (53%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
E M + T +QQ +I + G D++ S+TGSGKTLA+ IP +Q+L + R +S++D
Sbjct: 17 EHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRA-LSKRDP- 74
Query: 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 527
VI+ PTRELA Q +L + T + GGE + ++K +VATPGR
Sbjct: 75 RVVILTPTRELAKQVFSQL-RLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGR 133
Query: 528 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587
L DH + +E L+LDEADR+LD G+ +++ + + +K Q ++L SATL
Sbjct: 134 LADHLTQGH-FHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ--TLLFSATLD 190
Query: 588 PA-VQRLAGMTLQNP--IQIDAADS--TDIHNT---TDSLVIPDSLKQHFIVTPPKLRLV 639
A V A L P I I+A S DI D+L ++L QHF+VT +++
Sbjct: 191 HAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQII 250
Score = 265 (98.3 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 86/261 (32%), Positives = 136/261 (52%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +QQ +I + G D++ S+TGSGKTLA+ IP +Q+L + R +S++D
Sbjct: 19 MGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRA-LSKRDP-RV 76
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
VI+ PTRELA Q +L + T + GGE + ++K +VATPGRL
Sbjct: 77 VILTPTRELAKQVFSQL-RLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLA 135
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
DH + +E L+LDEADR+LD G+ +++ + + +K Q ++L SATL A
Sbjct: 136 DHLTQGH-FHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ--TLLFSATLDHA 192
Query: 181 TCWCKHTETL-KFSKV-------EHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSV 232
TE L K ++ EH+ + + + D +++ A L +K Q Q +
Sbjct: 193 QVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKE-ALLQHFLVTEKSQ-QII 250
Query: 233 LLSATLTPAVQRLAGM-TLQN 252
+ +AT + RLA + T QN
Sbjct: 251 IFTATRSDT-DRLAKLLTEQN 270
Score = 192 (72.6 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 41/140 (29%), Positives = 83/140 (59%)
Query: 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714
++ ++++F AT+ D +LL+ +N+ L G ++Q +R ++ ++F + +L
Sbjct: 244 EKSQQIIIFTATRSDTDRLAKLLTE---QNLNAVALSGELNQGQRNQIMESFSKGQHKIL 300
Query: 715 ICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKL 771
+ TD+A+RGLDL V ++ + P + ++VHR+GRT R G +G ++ + P++ +K
Sbjct: 301 VTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKN 360
Query: 772 VEELQNRRI---RIEEIKLK 788
VE ++I ++E IK+K
Sbjct: 361 VEAFLQQKISFTKVEGIKVK 380
Score = 123 (48.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 58/220 (26%), Positives = 106/220 (48%)
Query: 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD- 140
K+ +I+P+ +++ +A ++ +++ TP R L K FS++ +
Sbjct: 51 KTLAFIIPAL----QRLSKNRALSKRDPRVVILTPTREL--AKQV----FSQLRLFTANT 100
Query: 141 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTET-LKFSKVEHLV 199
+ +L G E + + +++L+K+ P+F TP T+ + +E L+
Sbjct: 101 QYKAVLILGGE-NFNDQVKVLQKE-PEF------IVATPGRLADHLTQGHFHLNGLELLI 152
Query: 200 LDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA-VQRLAGMTLQNP--IQI 256
LDEADR+LD G+ +++ + + +K Q ++L SATL A V A L P I I
Sbjct: 153 LDEADRMLDLGFSKELTQINKAADHRKRQ--TLLFSATLDHAQVNEFATELLTKPKRIAI 210
Query: 257 DAADS--TDIHNT---TDSLVIPDSLKQHFIVTPPKLRLV 291
+A S DI D+L ++L QHF+VT +++
Sbjct: 211 NAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQII 250
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 299 (110.3 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 85/240 (35%), Positives = 128/240 (53%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
E M + T +QQ +I + G D++ S+TGSGKTLA+ IP +Q+L + R +S++D
Sbjct: 17 EHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRA-LSKRDP- 74
Query: 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 527
VI+ PTRELA Q +L + T + GGE + ++K +VATPGR
Sbjct: 75 RVVILTPTRELAKQVFSQL-RLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGR 133
Query: 528 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587
L DH + +E L+LDEADR+LD G+ +++ + + +K Q ++L SATL
Sbjct: 134 LADHLTQGH-FHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ--TLLFSATLD 190
Query: 588 PA-VQRLAGMTLQNP--IQIDAADS--TDIHNT---TDSLVIPDSLKQHFIVTPPKLRLV 639
A V A L P I I+A S DI D+L ++L QHF+VT +++
Sbjct: 191 HAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQII 250
Score = 265 (98.3 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 86/261 (32%), Positives = 136/261 (52%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +QQ +I + G D++ S+TGSGKTLA+ IP +Q+L + R +S++D
Sbjct: 19 MGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRA-LSKRDP-RV 76
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
VI+ PTRELA Q +L + T + GGE + ++K +VATPGRL
Sbjct: 77 VILTPTRELAKQVFSQL-RLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLA 135
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
DH + +E L+LDEADR+LD G+ +++ + + +K Q ++L SATL A
Sbjct: 136 DHLTQGH-FHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ--TLLFSATLDHA 192
Query: 181 TCWCKHTETL-KFSKV-------EHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSV 232
TE L K ++ EH+ + + + D +++ A L +K Q Q +
Sbjct: 193 QVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKE-ALLQHFLVTEKSQ-QII 250
Query: 233 LLSATLTPAVQRLAGM-TLQN 252
+ +AT + RLA + T QN
Sbjct: 251 IFTATRSDT-DRLAKLLTEQN 270
Score = 192 (72.6 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 41/140 (29%), Positives = 83/140 (59%)
Query: 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714
++ ++++F AT+ D +LL+ +N+ L G ++Q +R ++ ++F + +L
Sbjct: 244 EKSQQIIIFTATRSDTDRLAKLLTE---QNLNAVALSGELNQGQRNQIMESFSKGQHKIL 300
Query: 715 ICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKL 771
+ TD+A+RGLDL V ++ + P + ++VHR+GRT R G +G ++ + P++ +K
Sbjct: 301 VTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKN 360
Query: 772 VEELQNRRI---RIEEIKLK 788
VE ++I ++E IK+K
Sbjct: 361 VEAFLQQKISFTKVEGIKVK 380
Score = 123 (48.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 58/220 (26%), Positives = 106/220 (48%)
Query: 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD- 140
K+ +I+P+ +++ +A ++ +++ TP R L K FS++ +
Sbjct: 51 KTLAFIIPAL----QRLSKNRALSKRDPRVVILTPTREL--AKQV----FSQLRLFTANT 100
Query: 141 EADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTET-LKFSKVEHLV 199
+ +L G E + + +++L+K+ P+F TP T+ + +E L+
Sbjct: 101 QYKAVLILGGE-NFNDQVKVLQKE-PEF------IVATPGRLADHLTQGHFHLNGLELLI 152
Query: 200 LDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA-VQRLAGMTLQNP--IQI 256
LDEADR+LD G+ +++ + + +K Q ++L SATL A V A L P I I
Sbjct: 153 LDEADRMLDLGFSKELTQINKAADHRKRQ--TLLFSATLDHAQVNEFATELLTKPKRIAI 210
Query: 257 DAADS--TDIHNT---TDSLVIPDSLKQHFIVTPPKLRLV 291
+A S DI D+L ++L QHF+VT +++
Sbjct: 211 NAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQII 250
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 431 (156.8 bits), Expect = 1.5e-39, P = 1.5e-39
Identities = 123/393 (31%), Positives = 203/393 (51%)
Query: 394 EFPGIHPFMKKNLNEGM-----NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI 448
++ + F + NL E + + + +Q + +LDG D++ ++TGSGKTLA+ I
Sbjct: 111 KYAALKTFAESNLPENVLDCCKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGI 170
Query: 449 PIIQKLQEMRPKI---SRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGE 505
P I + + KI S+K +++ PTRELA+Q ++ + + + + GG
Sbjct: 171 PAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEP-CGLKSICVYGGS 229
Query: 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565
+ + IR G+ I++ TPGRL D + + L+ S V +VLDEADR+LD G+E +
Sbjct: 230 SKGPQISAIRSGVDIVIGTPGRLRDLIE-SNVLRLSDVSFVVLDEADRMLDMGFEEPVRF 288
Query: 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQ-NPIQIDAADSTDIHNTTDSLVIPDS 624
L K + Q ++ SAT V +LA + NPI++ S D+ D + I +
Sbjct: 289 ILSNTNKVR---QMVMFSATWPLDVHKLAQEFMDPNPIKV-IIGSVDLAANHDVMQIIEV 344
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L + RL+AL + ++ +++++LVF + A+ L +
Sbjct: 345 LDER----ARDQRLIALL-------EKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKA 393
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
++ +HG+ +QSERT F+ +L+ TDVAARGLD+P V+ ++ YT P ++ DY
Sbjct: 394 VS---IHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 450
Query: 745 VHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
VHR+GRT R G +G + F P L EL N
Sbjct: 451 VHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVN 483
Score = 230 (86.0 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 58/163 (35%), Positives = 92/163 (56%)
Query: 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKI---SRKDGIYAVIILPTRELALQT 73
+LDG D++ ++TGSGKTLA+ IP I + + KI S+K +++ PTRELA+Q
Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
Query: 74 LEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSK 133
++ + + + + GG + + IR G+ I++ TPGRL D + + L+ S
Sbjct: 208 SDVLREAGEP-CGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIE-SNVLRLSD 265
Query: 134 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
V +VLDEADR+LD G+E + L K + Q ++ SAT
Sbjct: 266 VSFVVLDEADRMLDMGFEEPVRFILSNTNKVR---QMVMFSAT 305
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 303 (111.7 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 78/202 (38%), Positives = 117/202 (57%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDG 466
E TQ T VQQ +I +L G D++V +QTG+GKT +A+PI+++L P S++ G
Sbjct: 17 EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHG 76
Query: 467 IYA--VIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
V++L PTRELA Q + F + + V + + GG M + + +G+ +LVA
Sbjct: 77 PRQPRVLVLTPTRELAAQVHDSFKLYARDLKF-VSACIFGGVGMNPQVQAMARGVDVLVA 135
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
PGRLLD ++ S VE LVLDEADR+LD G+ D+ + L L ++ Q++L S
Sbjct: 136 CPGRLLDLAGQG-SVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKR---QNLLFS 191
Query: 584 ATLTPAVQRLAGMTLQNPIQID 605
AT + + LAG L NP +I+
Sbjct: 192 ATFSKDITDLAGKLLHNPERIE 213
Score = 270 (100.1 bits), Expect = 7.8e-36, Sum P(2) = 7.8e-36
Identities = 70/179 (39%), Positives = 106/179 (59%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIYA-- 60
TQ T VQQ +I +L G D++V +QTG+GKT +A+PI+++L P S++ G
Sbjct: 22 TQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHGPRQPR 81
Query: 61 VIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
V++L PTRELA Q + F + + V + + GG M + + +G+ +LVA PGRL
Sbjct: 82 VLVLTPTRELAAQVHDSFKLYARDLKF-VSACIFGGVGMNPQVQAMARGVDVLVACPGRL 140
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
LD ++ S VE LVLDEADR+LD G+ D+ + L L ++ Q++L SAT +
Sbjct: 141 LDLAGQG-SVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKR---QNLLFSATFS 195
Score = 201 (75.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 40/118 (33%), Positives = 69/118 (58%)
Query: 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
++LVF T+ A+ E L ++ +HG+ SQ+ RT+ F++ + +L+ TD
Sbjct: 251 QVLVFTRTKHGANRLAEYLDK---HGLSAVAIHGNKSQNARTKALADFKAGEVRILVATD 307
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
+AARGLD+ + +V + P+ DYVHR+GRT R G G ++ + P E KL++ ++
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 365
Score = 121 (47.7 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
++ S VE LVLDEADR+LD G+ D+ + L L ++ Q++L SAT + + LAG
Sbjct: 148 SVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKR---QNLLFSATFSKDITDLAGK 204
Query: 249 TLQNPIQID 257
L NP +I+
Sbjct: 205 LLHNPERIE 213
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 444 (161.4 bits), Expect = 1.9e-39, P = 1.9e-39
Identities = 127/393 (32%), Positives = 201/393 (51%)
Query: 396 PGIHPFMKKNLNEGMNIT-------QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI 448
P ++ F + +L E +N+ + T VQ+ +I +L+G D++ +QTGSGKT A+
Sbjct: 156 PPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCF 215
Query: 449 PIIQKLQE----MRPKISRKDGIYAVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTG 503
PII + + RP+ SR AVI+ PTRELA Q + K ++ +V ++ G
Sbjct: 216 PIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAY--G 273
Query: 504 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 563
G + + + +G+ ILVATPGRL D + + + L LDEADR+LD G+E I
Sbjct: 274 GTPINQQLRELERGVDILVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQI 332
Query: 564 AEFLEILKKQ-KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622
+ +E + + Q++L SAT +QRLA L N I + + ++TD +V
Sbjct: 333 RKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGR---VGSSTDLIV-- 387
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ F++ K L + + +N + +++ LVF+ T+ AD L + +
Sbjct: 388 --QRVEFVLDSDKRS--HLMDLLHAQRENGIQGKQALTLVFVETKRGAD---SLENWLCI 440
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+HG +Q ER K F+S ++ +L+ TDVAARGLD+P V +V + P+
Sbjct: 441 NGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 500
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
DYVHR+GRT R G G + F L L
Sbjct: 501 DYVHRIGRTGRAGKSGLATAFFNDGNTSLARPL 533
Score = 245 (91.3 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 82/273 (30%), Positives = 134/273 (49%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE----MRPKISRKDGIYAVI 62
T VQ+ +I +L+G D++ +QTGSGKT A+ PII + + RP+ SR AVI
Sbjct: 183 TPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVI 242
Query: 63 ILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
+ PTRELA Q + K ++ +V ++ GG + + + +G+ ILVATPGRL D
Sbjct: 243 LSPTRELASQIHDEAKKFSYQTGVKVVVAY--GGTPINQQLRELERGVDILVATPGRLND 300
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ-KPQFQSILLSATLTP- 179
+ + + L LDEADR+LD G+E I + +E + + Q++L SAT
Sbjct: 301 LLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPRE 359
Query: 180 ----ATCWCKHTETLKFSKV---EHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSV 232
A + + L +V L++ + +LD + + L ++ Q +
Sbjct: 360 IQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQA 419
Query: 233 LLSATLTPAVQRLAGMTLQNPIQIDAADSTDIH 265
L TL + +L+N + I+ +T IH
Sbjct: 420 L---TLVFVETKRGADSLENWLCINGFPATSIH 449
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 264 (98.0 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 69/199 (34%), Positives = 120/199 (60%)
Query: 393 EEFP--GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
EEF G+ + K +N+ + T +Q+ +I IL+G +++ ++ TG+GKT AY +P+
Sbjct: 2 EEFKKLGLITPLLKAVND-LGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 451 IQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510
+Q++Q R K ++ +I+ PTRELALQ + KL K + + + GG+ ++ +
Sbjct: 61 LQRIQ--RGKKAQ-----VLIVTPTRELALQVADEVAKLGK-YLKVRALAVYGGQAIERQ 112
Query: 511 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570
+R+G+ ++V TPGR+LDH +T ++++ ++LDEAD +LD G+ DI L L
Sbjct: 113 IRGLRQGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL 171
Query: 571 KKQKPQFQSILLSATLTPA 589
++ Q++L SATL PA
Sbjct: 172 TNRQ---QTLLFSATL-PA 186
Score = 258 (95.9 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 63/174 (36%), Positives = 109/174 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ +I IL+G +++ ++ TG+GKT AY +P++Q++Q R K ++ +I+ PT
Sbjct: 26 TPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQ--RGKKAQ-----VLIVTPT 78
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ + KL K + + + GG+ ++ + +R+G+ ++V TPGR+LDH
Sbjct: 79 RELALQVADEVAKLGK-YLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGR- 136
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+T ++++ ++LDEAD +LD G+ DI L L ++ Q++L SATL PA
Sbjct: 137 KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ---QTLLFSATL-PA 186
Score = 231 (86.4 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 53/142 (37%), Positives = 80/142 (56%)
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704
I G +N + + +VF T+ D E L+ A LHG MSQ ERT+ K
Sbjct: 227 IEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNF---RGYAAKGLHGDMSQRERTQTIK 283
Query: 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
+F++ K+ +L+ TDVAARGLD+P V ++ + P + Y+HR+GRT R G EG ++ +
Sbjct: 284 SFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLI 343
Query: 765 IPSEVKL---VEELQNRRIRIE 783
E KL +EE N+R++ E
Sbjct: 344 NYRERKLLKAIEEAINKRLKRE 365
Score = 83 (34.3 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
+T ++++ ++LDEAD +LD G+ DI L L ++ Q++L SATL PA
Sbjct: 137 KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ---QTLLFSATL-PA 186
Score = 44 (20.5 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 273 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA 322
IP L+ H +V A+++L Q + +++++L+ T+++A
Sbjct: 33 IPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTPTRELA 82
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 264 (98.0 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 69/199 (34%), Positives = 120/199 (60%)
Query: 393 EEFP--GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
EEF G+ + K +N+ + T +Q+ +I IL+G +++ ++ TG+GKT AY +P+
Sbjct: 2 EEFKKLGLITPLLKAVND-LGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 451 IQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510
+Q++Q R K ++ +I+ PTRELALQ + KL K + + + GG+ ++ +
Sbjct: 61 LQRIQ--RGKKAQ-----VLIVTPTRELALQVADEVAKLGK-YLKVRALAVYGGQAIERQ 112
Query: 511 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570
+R+G+ ++V TPGR+LDH +T ++++ ++LDEAD +LD G+ DI L L
Sbjct: 113 IRGLRQGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL 171
Query: 571 KKQKPQFQSILLSATLTPA 589
++ Q++L SATL PA
Sbjct: 172 TNRQ---QTLLFSATL-PA 186
Score = 258 (95.9 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 63/174 (36%), Positives = 109/174 (62%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ +I IL+G +++ ++ TG+GKT AY +P++Q++Q R K ++ +I+ PT
Sbjct: 26 TPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQ--RGKKAQ-----VLIVTPT 78
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ + KL K + + + GG+ ++ + +R+G+ ++V TPGR+LDH
Sbjct: 79 RELALQVADEVAKLGK-YLKVRALAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGR- 136
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+T ++++ ++LDEAD +LD G+ DI L L ++ Q++L SATL PA
Sbjct: 137 KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ---QTLLFSATL-PA 186
Score = 231 (86.4 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 53/142 (37%), Positives = 80/142 (56%)
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704
I G +N + + +VF T+ D E L+ A LHG MSQ ERT+ K
Sbjct: 227 IEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNF---RGYAAKGLHGDMSQRERTQTIK 283
Query: 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
+F++ K+ +L+ TDVAARGLD+P V ++ + P + Y+HR+GRT R G EG ++ +
Sbjct: 284 SFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLI 343
Query: 765 IPSEVKL---VEELQNRRIRIE 783
E KL +EE N+R++ E
Sbjct: 344 NYRERKLLKAIEEAINKRLKRE 365
Score = 83 (34.3 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
+T ++++ ++LDEAD +LD G+ DI L L ++ Q++L SATL PA
Sbjct: 137 KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ---QTLLFSATL-PA 186
Score = 44 (20.5 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 273 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMA 322
IP L+ H +V A+++L Q + +++++L+ T+++A
Sbjct: 33 IPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTPTRELA 82
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 303 (111.7 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 79/202 (39%), Positives = 117/202 (57%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDG 466
E TQ T VQQ +I +L G D++V +QTG+GKT +A+PI+++L P S++ G
Sbjct: 17 EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHG 76
Query: 467 IYA--VIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVA 523
V++L PTRELA Q E F + + V + + GG M + + +G+ +LVA
Sbjct: 77 PRQPRVLVLTPTRELAAQVHESFKLYARDLKF-VSACIFGGVGMNPQVQAMSRGVDVLVA 135
Query: 524 TPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLS 583
PGRLLD ++ S VE LVLDEADR+LD G+ D+ + L L ++ Q++L S
Sbjct: 136 CPGRLLDLAGQG-SVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKR---QNLLFS 191
Query: 584 ATLTPAVQRLAGMTLQNPIQID 605
AT + + LAG L NP +I+
Sbjct: 192 ATFSNDITSLAGKLLHNPERIE 213
Score = 270 (100.1 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 71/179 (39%), Positives = 106/179 (59%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIYA-- 60
TQ T VQQ +I +L G D++V +QTG+GKT +A+PI+++L P S++ G
Sbjct: 22 TQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHGPRQPR 81
Query: 61 VIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
V++L PTRELA Q E F + + V + + GG M + + +G+ +LVA PGRL
Sbjct: 82 VLVLTPTRELAAQVHESFKLYARDLKF-VSACIFGGVGMNPQVQAMSRGVDVLVACPGRL 140
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
LD ++ S VE LVLDEADR+LD G+ D+ + L L ++ Q++L SAT +
Sbjct: 141 LDLAGQG-SVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKR---QNLLFSATFS 195
Score = 200 (75.5 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 40/118 (33%), Positives = 68/118 (57%)
Query: 659 KMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
++LVF T+ A+ E L +A +HG+ SQ+ RT+ F++ +++ TD
Sbjct: 251 QVLVFTRTKHGANRLAEYLDK---HGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ 776
+AARGLD+ + +V + P+ DYVHR+GRT R G G ++ + P E KL++ ++
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 365
Score = 121 (47.7 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
++ S VE LVLDEADR+LD G+ D+ + L L ++ Q++L SAT + + LAG
Sbjct: 148 SVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKR---QNLLFSATFSNDITSLAGK 204
Query: 249 TLQNPIQID 257
L NP +I+
Sbjct: 205 LLHNPERIE 213
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 299 (110.3 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 73/226 (32%), Positives = 124/226 (54%)
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGI 467
E M T +Q +I L+G DV+ ++TGSGKT A+A+P++Q L E P+ +
Sbjct: 62 ENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEA-PQT-----L 115
Query: 468 YAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 527
+ +++ PTRELA Q + F L S + + + GG M ++ + K I+VATPGR
Sbjct: 116 FGLVLAPTRELAYQISQAFETL-GSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGR 174
Query: 528 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587
LLDH ++T+ +++L +DEADR+LD + + + + IL + + + L SAT++
Sbjct: 175 LLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTY---LFSATMS 231
Query: 588 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIV 631
V+ L +L NP+++ + +T S + IP K ++V
Sbjct: 232 TKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLV 277
Score = 254 (94.5 bits), Expect = 6.2e-34, Sum P(2) = 6.2e-34
Identities = 60/172 (34%), Positives = 101/172 (58%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I L+G DV+ ++TGSGKT A+A+P++Q L E P+ ++ +++ PT
Sbjct: 70 TPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEA-PQT-----LFGLVLAPT 123
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q + F L S + + + GG M ++ + K I+VATPGRLLDH ++T
Sbjct: 124 RELAYQISQAFETL-GSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENT 182
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ +++L +DEADR+LD + + + + IL + + + L SAT++
Sbjct: 183 KGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTY---LFSATMS 231
Score = 193 (73.0 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 690 LHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVG 749
LHG +SQS R FRS +L+ TDVAARGLD+P VD + + P S Y+HRVG
Sbjct: 315 LHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVG 374
Query: 750 RTARVGHEGSSLLFLIPSEVKL 771
RTAR G G ++ F+ +V++
Sbjct: 375 RTARAGKSGVAISFVTQYDVEV 396
Score = 114 (45.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 186 HTETLK-FS--KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAV 242
H E K FS +++L +DEADR+LD + + + + IL + + + L SAT++ V
Sbjct: 178 HLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTY---LFSATMSTKV 234
Query: 243 QRLAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIV 283
+ L +L NP+++ + +T S + IP K ++V
Sbjct: 235 ESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLV 277
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 279 (103.3 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 75/226 (33%), Positives = 127/226 (56%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP- 449
++E+ +P M + + + M ++ + +Q + +L G D++ +QTG+GKTLA+ +P
Sbjct: 283 TFEQCFAEYPDMLEEITK-MGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPG 341
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+I + P+ +R G +++ PTRELALQ +E+ K SF + + GG
Sbjct: 342 MIHTEYQSTPRGTR-GGANVLVLAPTRELALQ-IEMEVKKY-SFRGMKAVCVYGGGNRNM 398
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ + + +G I++ TPGRL D + S + +LVLDEADR+LD G+E I + +
Sbjct: 399 QISDLERGAEIIICTPGRLNDLIM-ANVIDVSTITYLVLDEADRMLDMGFEPQIRK---V 454
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNT 615
+ +P Q+I+ SAT P V+RLA ++NPIQ+ S D+ T
Sbjct: 455 MLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQV-CVGSLDLAAT 499
Score = 230 (86.0 bits), Expect = 6.4e-34, Sum P(2) = 6.4e-34
Identities = 61/180 (33%), Positives = 101/180 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP-IIQKLQEMRPKISRKDGIY 59
M ++ + +Q + +L G D++ +QTG+GKTLA+ +P +I + P+ +R G
Sbjct: 301 MGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTR-GGAN 359
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
+++ PTRELALQ +E+ K SF + + GG + + + +G I++ TPGRL
Sbjct: 360 VLVLAPTRELALQ-IEMEVKKY-SFRGMKAVCVYGGGNRNMQISDLERGAEIIICTPGRL 417
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
D + S + +LVLDEADR+LD G+E I + ++ +P Q+I+ SAT P
Sbjct: 418 NDLIM-ANVIDVSTITYLVLDEADRMLDMGFEPQIRK---VMLDIRPDRQTIMTSATWPP 473
Score = 227 (85.0 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 70/238 (29%), Positives = 120/238 (50%)
Query: 574 KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP 633
+P Q+I+ SAT P V+RLA ++NPIQ+ S D+ T S+KQ +
Sbjct: 459 RPDRQTIMTSATWPPGVRRLAQSYMKNPIQV-CVGSLDLAAT-------HSVKQIIKLME 510
Query: 634 PKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHG 692
+ + + SF+ +N++ + K+++F + AD +L S + + +HG
Sbjct: 511 DDMDKFNTITSFV----KNMSSTD--KIIIFCGRKVRAD---DLSSELTLDGFMTQCIHG 561
Query: 693 SMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTA 752
+ Q +R + +S +L+ TDVA+RGLD+ + ++ Y P + +YVHRVGRT
Sbjct: 562 NRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTG 621
Query: 753 RVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLS-VKMEGDLSRLADG 809
R G +G+S+ F + + +EL E+ ++ D L N+ K D R A+G
Sbjct: 622 RAGRQGTSISFFTREDWAMAKELIEILQEAEQ-EVPDELHNMARRFKAMKD-KRAAEG 677
Score = 134 (52.2 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252
S + +LVLDEADR+LD G+E I + ++ +P Q+++ SAT P V+RLA ++N
Sbjct: 429 STITYLVLDEADRMLDMGFEPQIRK---VMLDIRPDRQTIMTSATWPPGVRRLAQSYMKN 485
Query: 253 PIQIDAADSTDIHNT 267
PIQ+ S D+ T
Sbjct: 486 PIQV-CVGSLDLAAT 499
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 281 (104.0 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 74/224 (33%), Positives = 123/224 (54%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 109 NFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 167
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 168 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 226
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 227 FLEAGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 282
Query: 591 QRLAGMTLQNPIQIDAA--DSTDIHNTTDSL-VIPDSLKQHFIV 631
++LA LQ+ +QI+ + + HN + V +S K H ++
Sbjct: 283 RQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLI 326
Score = 253 (94.1 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 61/175 (34%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 109 NFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 167
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 168 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 226
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 227 FLEAGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 277
Score = 247 (92.0 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 67/208 (32%), Positives = 113/208 (54%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA LQ+ +QI+ + ++ + L I D +
Sbjct: 260 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGN-LELSANHNILQIVDVCME 318
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D +L + +
Sbjct: 319 ----SEKDHKLIQLMEEIMA-------EKENKTIIFVETKRRCD---DLTRRMRRDGWPA 364
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V FRS K+ +LI TDVA+RGLD+ V +++ Y P+SS DYVHR
Sbjct: 365 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 424
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR ++G++ F P +K EL
Sbjct: 425 IGRTARSTNKGTAYTFFTPGNLKQAREL 452
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 305 (112.4 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 82/252 (32%), Positives = 138/252 (54%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +Q +I L G D++ ++TGSGKT A+A+PI+Q L + ++ +A+++ PT
Sbjct: 49 TKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQRL------FALVLTPT 102
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA Q E F L S + + + GG S+ + K I++ATPGRL+DH ++T
Sbjct: 103 RELAFQISEQFEALGSSIG-VHSAVIVGGIDSMSQSLALAKKPHIIIATPGRLVDHLENT 161
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+ ++ LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+L
Sbjct: 162 KGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKQVQKLQR 218
Query: 596 MTLQNPIQIDAADSTDIHNTTDSL-----VIPDSLKQHFIVTPPKLRLVALASFILGKCQ 650
L+NP++ A S + T + L IP K ++V L +A SF++ C
Sbjct: 219 AALKNPVKC-AVSSK--YQTVEKLQQYYIFIPSKFKDSYLVYI--LNELAGNSFMIF-CS 272
Query: 651 NVNEDEESKMLV 662
N + + +L+
Sbjct: 273 TCNNTQRTALLL 284
Score = 262 (97.3 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 61/172 (35%), Positives = 102/172 (59%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I L G D++ ++TGSGKT A+A+PI+Q L + ++ +A+++ PT
Sbjct: 49 TKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQRL------FALVLTPT 102
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E F L S + + + GG S+ + K I++ATPGRL+DH ++T
Sbjct: 103 RELAFQISEQFEALGSSIG-VHSAVIVGGIDSMSQSLALAKKPHIIIATPGRLVDHLENT 161
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ ++ LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T
Sbjct: 162 KGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMT 210
Score = 234 (87.4 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
Identities = 55/155 (35%), Positives = 87/155 (56%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ L+Q++I P K + L +IL NE + ++F +T + T LL LG
Sbjct: 237 EKLQQYYIFIPSKFKDSYLV-YIL------NELAGNSFMIFCSTCNNTQ-RTALLLRNLG 288
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
LHG MSQ++R F++ +L+ TDVA+RGLD+P VD ++ + P+ S
Sbjct: 289 --FTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSK 346
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
DY+HRVGRTAR G G S+ F+ +V+L + +++
Sbjct: 347 DYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEH 381
Score = 131 (51.2 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 39/135 (28%), Positives = 71/135 (52%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ ++ LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 159 ENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKQVQK 215
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSL-----VIPDSLKQHFIVTPPKLRLVALASFILG 299
L L+NP++ A S + T + L IP K ++V L +A SF++
Sbjct: 216 LQRAALKNPVKC-AVSSK--YQTVEKLQQYYIFIPSKFKDSYLVYI--LNELAGNSFMIF 270
Query: 300 KCQNVNEDEESKMLV 314
C N + + +L+
Sbjct: 271 -CSTCNNTQRTALLL 284
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 323 (118.8 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 83/213 (38%), Positives = 121/213 (56%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +Q +I PIL+G DV+ +QTG+GKT AYA+P+IQK+ P+ R + +++ PT
Sbjct: 25 TPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLST-PR-GR---VRTLVLAPT 79
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA Q E F L + I + GG M + R+R G+ ++VA PGRLLDH
Sbjct: 80 RELACQIAESFRSLGQRAR-IRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRG 138
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
T+ VE L++DEADR+ D G++ DI L+ L + P Q++L SAT+ P V++L
Sbjct: 139 -TIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQ--PH-QTLLFSATMPPEVRKLTL 194
Query: 596 MTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 628
T NP+ I + + S V P +K H
Sbjct: 195 ETQTNPVTIQIGTQAPASSVSHS-VYP--VKNH 224
Score = 294 (108.6 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
Identities = 72/173 (41%), Positives = 104/173 (60%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I PIL+G DV+ +QTG+GKT AYA+P+IQK+ P+ R + +++ PT
Sbjct: 25 TPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLST-PR-GR---VRTLVLAPT 79
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E F L + I + GG M + R+R G+ ++VA PGRLLDH
Sbjct: 80 RELACQIAESFRSLGQRAR-IRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRG 138
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
T+ VE L++DEADR+ D G++ DI L+ L + P Q++L SAT+ P
Sbjct: 139 -TIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQ--PH-QTLLFSATMPP 187
Score = 173 (66.0 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 39/121 (32%), Positives = 64/121 (52%)
Query: 656 EESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715
E +L+F T+ A+ + +S G A L G++SQ+ R V + FR +L+
Sbjct: 238 ETKSVLIFARTKYGAENLADEISRA-GFTTA--SLQGNLSQNRRHAVMEGFRRGNFKILV 294
Query: 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
TD+AARGLD+ + ++ Y P + DY HR+GRT R G +L + + +V ++
Sbjct: 295 ATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDI 354
Query: 776 Q 776
Q
Sbjct: 355 Q 355
Score = 125 (49.1 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
T+ VE L++DEADR+ D G++ DI L+ L + P Q++L SAT+ P V++L
Sbjct: 139 TIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQ--PH-QTLLFSATMPPEVRKLTLE 195
Query: 249 TLQNPIQIDAADSTDIHNTTDSLVIPDSLKQH 280
T NP+ I + + S V P +K H
Sbjct: 196 TQTNPVTIQIGTQAPASSVSHS-VYP--VKNH 224
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 443 (161.0 bits), Expect = 3.5e-39, P = 3.5e-39
Identities = 132/396 (33%), Positives = 208/396 (52%)
Query: 396 PGIHPFMKKNLNEGMNIT-------QVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYA 447
P ++ F + +L E +N+ + T VQ+ +I PIL G D++ +QTGSGKT A+
Sbjct: 143 PPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAI-PILAAGRDLMACAQTGSGKTAAFC 201
Query: 448 IPIIQ---KLQEM-RPKISRKDGIY--AVIILPTRELALQTLEIFTKLC-KSFTWIVPSW 500
PII K Q + RP+ R G+Y AVI+ PTRELA Q + K ++ +V ++
Sbjct: 202 FPIISGIMKDQHIERPRGVR--GVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAY 259
Query: 501 LTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE 560
GG + + + +G+ ILVATPGRL D + + V L LDEADR+LD G+E
Sbjct: 260 --GGTPVNQQIRELERGVDILVATPGRLNDLLERGR-VSLQMVRFLALDEADRMLDMGFE 316
Query: 561 RDIAEFLEILKKQKPQF-QSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSL 619
I + ++ + P Q++L SAT +QRLA L N I + + ++TD +
Sbjct: 317 PQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGR---VGSSTDLI 373
Query: 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST 679
V + F+ K L + + +N N+ +++ LVF+ T+ AD L +
Sbjct: 374 V----QRVEFVHDSDKRS--HLMDLLHAQRENGNQGKQALTLVFVETKKGAD---SLENW 424
Query: 680 VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS 739
+ +HG SQ ER ++F++ ++ +L+ TDVAARGLD+P V +V + P+
Sbjct: 425 LCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPN 484
Query: 740 SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
DYVHR+GRT R G+ G + F + + + L
Sbjct: 485 DIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPL 520
Score = 234 (87.4 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 71/179 (39%), Positives = 102/179 (56%)
Query: 7 TTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQ---KLQEM-RPKISRKDGIY-- 59
T VQ+ +I PIL G D++ +QTGSGKT A+ PII K Q + RP+ R G+Y
Sbjct: 170 TPVQRNAI-PILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVR--GVYPL 226
Query: 60 AVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
AVI+ PTRELA Q + K ++ +V ++ GG + + + +G+ ILVATPGR
Sbjct: 227 AVILSPTRELACQIHDEARKFSYQTGVKVVVAY--GGTPVNQQIRELERGVDILVATPGR 284
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF-QSILLSAT 176
L D + + V L LDEADR+LD G+E I + ++ + P Q++L SAT
Sbjct: 285 LNDLLERGR-VSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 342
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 286 (105.7 bits), Expect = 3.5e-39, Sum P(2) = 3.5e-39
Identities = 70/223 (31%), Positives = 122/223 (54%)
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP 459
P K +G + + +Q +I +L G DV+ +QTG+GKT + +P+++ L +
Sbjct: 11 PLQKAVSEQGYDTP--SPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKGHK 68
Query: 460 KISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGIS 519
++ A+++ PTRELA Q E K + + + + GG + + ++R G+
Sbjct: 69 --AKSGQTRALVLTPTRELAAQVGESVETYGK-YLPLRSAVVFGGVPINPQINKLRHGVD 125
Query: 520 ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS 579
+LVATPGRLLD + +KF+++E LVLDEADR+LD G+ RDI + L +L ++ Q+
Sbjct: 126 VLVATPGRLLDLVQQN-AVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR---QN 181
Query: 580 ILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622
++ SAT + ++ LA + +P++I T + P
Sbjct: 182 LMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICP 224
Score = 259 (96.2 bits), Expect = 4.2e-36, Sum P(2) = 4.2e-36
Identities = 61/170 (35%), Positives = 103/170 (60%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68
+Q +I +L G DV+ +QTG+GKT + +P+++ L + ++ A+++ PTRE
Sbjct: 27 IQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKGHK--AKSGQTRALVLTPTRE 84
Query: 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 128
LA Q E K + + + + GG + + ++R G+ +LVATPGRLLD +
Sbjct: 85 LAAQVGESVETYGK-YLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRLLDLVQQN-A 142
Query: 129 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+KF+++E LVLDEADR+LD G+ RDI + L +L ++ Q+++ SAT +
Sbjct: 143 VKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR---QNLMFSATFS 189
Score = 212 (79.7 bits), Expect = 3.5e-39, Sum P(2) = 3.5e-39
Identities = 47/140 (33%), Positives = 80/140 (57%)
Query: 650 QNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSV 709
Q + ++ ++LVF T+ A+ L +++ I+ +HG+ SQ RT+ F+S
Sbjct: 236 QLIKQENWQQVLVFSRTKHGAN---RLAKSLIQAEISAAAIHGNKSQGARTKALADFKSG 292
Query: 710 KSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEV 769
+ VL+ TD+AARGLD+ + +V + P+ DYVHR+GRT R G G ++ + E+
Sbjct: 293 EVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEI 352
Query: 770 KL---VEELQNRRIRIEEIK 786
KL +E L NR + +E++
Sbjct: 353 KLLKDIERLINRVLERQEVE 372
Score = 133 (51.9 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
+KF+++E LVLDEADR+LD G+ RDI + L +L ++ Q+++ SAT + ++ LA
Sbjct: 143 VKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR---QNLMFSATFSDEIRELAKGL 199
Query: 250 LQNPIQIDAADSTDIHNTTDSLVIP 274
+ +P++I T + P
Sbjct: 200 VNHPVEISVTPRNAAATTVKQWICP 224
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 309 (113.8 bits), Expect = 7.1e-25, P = 7.1e-25
Identities = 86/293 (29%), Positives = 154/293 (52%)
Query: 372 PNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGD 431
P+ PT L+ +E T +++ G+ + + ++ + + T +Q +I L G D
Sbjct: 7 PDSPTEALQTAAEEEETKT-FKDL-GVTDVLCEACDQ-LGWAKPTKIQIEAIPLALQGRD 63
Query: 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491
++ ++TGSGKT A+A+PI+ L E ++ +A+++ PTRELA Q E F L
Sbjct: 64 IIGLAETGSGKTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGS 117
Query: 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551
S + + + GG S+ + K I++ATPGRL+DH ++T+ +++LV+DEA
Sbjct: 118 SIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEA 176
Query: 552 DRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTD 611
DRIL+ +E ++ + L+++ + + F L SAT+T VQ+L L+NP++ +
Sbjct: 177 DRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQKLQRAALKNPVKCAVSSKYQ 233
Query: 612 IHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 662
L IP K ++V L +A SF++ C N + + +L+
Sbjct: 234 TVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CSTCNNTQRTALLL 283
Score = 260 (96.6 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 61/172 (35%), Positives = 102/172 (59%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++ PT
Sbjct: 48 TKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVLTPT 101
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E F L S + + + GG S+ + K I++ATPGRL+DH ++T
Sbjct: 102 RELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENT 160
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T
Sbjct: 161 KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMT 209
Score = 235 (87.8 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 55/155 (35%), Positives = 87/155 (56%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ L+Q+++ P K + L +IL NE + ++F +T + T LL LG
Sbjct: 236 EKLQQYYLFIPSKFKDTYLV-YIL------NELAGNSFMIFCSTCNNTQ-RTALLLRNLG 287
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
LHG MSQS+R F++ +L+ TDVA+RGLD+P VD +V + P+ S
Sbjct: 288 --FTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK 345
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
DY+HRVGRTAR G G ++ F+ +V+L + +++
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 36/132 (27%), Positives = 68/132 (51%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 158 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQK 214
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 302
L L+NP++ + L IP K ++V L +A SF++ C
Sbjct: 215 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CS 271
Query: 303 NVNEDEESKMLV 314
N + + +L+
Sbjct: 272 TCNNTQRTALLL 283
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 303 (111.7 bits), Expect = 3.8e-24, P = 3.8e-24
Identities = 79/249 (31%), Positives = 134/249 (53%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++ PT
Sbjct: 48 TKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVLTPT 101
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELA Q E F L S + + + GG S+ + K I++ATPGRL+DH ++T
Sbjct: 102 RELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENT 160
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAG 595
+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+L
Sbjct: 161 KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQKLQR 217
Query: 596 MTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVN 653
L+NP++ + L IP K ++V L +A SF++ C N
Sbjct: 218 AALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CSTCN 274
Query: 654 EDEESKMLV 662
+ + +L+
Sbjct: 275 NTQRTALLL 283
Score = 260 (96.6 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 61/172 (35%), Positives = 102/172 (59%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++ PT
Sbjct: 48 TKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVLTPT 101
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E F L S + + + GG S+ + K I++ATPGRL+DH ++T
Sbjct: 102 RELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENT 160
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T
Sbjct: 161 KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMT 209
Score = 235 (87.8 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 55/155 (35%), Positives = 87/155 (56%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ L+Q+++ P K + L +IL NE + ++F +T + T LL LG
Sbjct: 236 EKLQQYYLFIPSKFKDTYLV-YIL------NELAGNSFMIFCSTCNNTQ-RTALLLRNLG 287
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
LHG MSQS+R F++ +L+ TDVA+RGLD+P VD +V + P+ S
Sbjct: 288 --FTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK 345
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
DY+HRVGRTAR G G ++ F+ +V+L + +++
Sbjct: 346 DYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEH 380
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 36/132 (27%), Positives = 68/132 (51%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 158 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQK 214
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 302
L L+NP++ + L IP K ++V L +A SF++ C
Sbjct: 215 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CS 271
Query: 303 NVNEDEESKMLV 314
N + + +L+
Sbjct: 272 TCNNTQRTALLL 283
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 278 (102.9 bits), Expect = 9.7e-21, P = 9.7e-21
Identities = 84/283 (29%), Positives = 145/283 (51%)
Query: 344 DPDNYEIPKKTEVKSGPI--SSLFQNNPDIPN-----VPT-RRLKPVS-EALFAPTSYEE 394
+P + KK ++ P + +Q +PD+ V T RR K ++ P
Sbjct: 36 NPGEKLVKKKWDLDEPPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLN 95
Query: 395 FPGIH-PFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK 453
F + P ++ N T+ T +Q L G D++ +QTGSGKTL+Y +P I
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 454 LQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKAR 513
+ +P + R DG +++ PTRELA Q ++ + C++ + + + GG +
Sbjct: 156 INH-QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRD 213
Query: 514 IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ 573
+ +G+ I +ATPGRL+D + +T + +LVLDEADR+LD G+E I + ++ ++
Sbjct: 214 LERGVEICIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-- 270
Query: 574 KPQFQSILLSATLTPAVQRLAGMTLQNPIQID--AADSTDIHN 614
P Q+++ SAT V++LA L++ I I+ A + + HN
Sbjct: 271 -PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHN 312
Score = 261 (96.9 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 60/175 (34%), Positives = 101/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 281
Score = 239 (89.2 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ I I+ + ++ + L I D
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC-- 320
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D EL + +
Sbjct: 321 HDVEKDEKLIRLM----------EEIMSEKENKTIVFVETKRRCD---ELTRKMRRDGWP 367
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 277 (102.6 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 69/206 (33%), Positives = 117/206 (56%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 286
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L++ I I+ A + + HN
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHN 312
Score = 261 (96.9 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 60/175 (34%), Positives = 101/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 281
Score = 239 (89.2 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ I I+ + ++ + L I D
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC-- 320
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D EL + +
Sbjct: 321 HDVEKDEKLIRLM----------EEIMSEKENKTIVFVETKRRCD---ELTRKMRRDGWP 367
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 277 (102.6 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 69/206 (33%), Positives = 117/206 (56%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 286
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L++ I I+ A + + HN
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHN 312
Score = 261 (96.9 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 60/175 (34%), Positives = 101/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 281
Score = 239 (89.2 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ I I+ + ++ + L I D
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC-- 320
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D EL + +
Sbjct: 321 HDVEKDEKLIRLM----------EEIMSEKENKTIVFVETKRRCD---ELTRKMRRDGWP 367
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 277 (102.6 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 69/206 (33%), Positives = 117/206 (56%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 286
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L++ I I+ A + + HN
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHN 312
Score = 261 (96.9 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 60/175 (34%), Positives = 101/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 281
Score = 239 (89.2 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ I I+ + ++ + L I D
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC-- 320
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D EL + +
Sbjct: 321 HDVEKDEKLIRLM----------EEIMSEKENKTIVFVETKRRCD---ELTRKMRRDGWP 367
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 277 (102.6 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 69/206 (33%), Positives = 117/206 (56%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 286
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L++ I I+ A + + HN
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHN 312
Score = 261 (96.9 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 60/175 (34%), Positives = 101/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 281
Score = 239 (89.2 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ I I+ + ++ + L I D
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC-- 320
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D EL + +
Sbjct: 321 HDVEKDEKLIRLM----------EEIMSEKENKTIVFVETKRRCD---ELTRKMRRDGWP 367
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 277 (102.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 69/206 (33%), Positives = 117/206 (56%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 286
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L++ I I+ A + + HN
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHN 312
Score = 261 (96.9 bits), Expect = 7.7e-39, Sum P(2) = 7.7e-39
Identities = 60/175 (34%), Positives = 101/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 281
Score = 239 (89.2 bits), Expect = 7.7e-39, Sum P(2) = 7.7e-39
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ I I+ + ++ + L I D
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC-- 320
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D EL + +
Sbjct: 321 HDVEKDEKLIRLM----------EEIMSEKENKTIVFVETKRRCD---ELTRKMRRDGWP 367
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 302 (111.4 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 78/225 (34%), Positives = 120/225 (53%)
Query: 382 VSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSG 441
+++A + S+ E I P + L E + T VQ +I +L G DVL + TGSG
Sbjct: 1 MTQASSSVASFAELGIIAP-LGNRLTE-LGYVSPTPVQAATIPAVLSGRDVLAGANTGSG 58
Query: 442 KTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW---IVP 498
KT A+A+P++Q+L E + + ++++PTRELA Q + F F IV
Sbjct: 59 KTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVA 118
Query: 499 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG 558
++ GG + + +R G +LVATPGRLLD + LK ++V VLDEADR+L G
Sbjct: 119 AF--GGVSVNLQMQSLRAGADVLVATPGRLLDLLA-SNALKLTQVSAFVLDEADRMLSLG 175
Query: 559 YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+ ++ + L L +QK Q++L SAT V+ L L P++
Sbjct: 176 FTEELEQVLAALPRQK---QTLLFSATFPEEVRALTTKLLHQPLE 217
Score = 285 (105.4 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 81/249 (32%), Positives = 127/249 (51%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T VQ +I +L G DVL + TGSGKT A+A+P++Q+L E + + ++++PT
Sbjct: 33 TPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPT 92
Query: 67 RELALQTLEIFTKLCKSFTW---IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 123
RELA Q + F F IV ++ GG + + +R G +LVATPGRLLD
Sbjct: 93 RELAQQVADSFLSYASHFNGQLKIVAAF--GGVSVNLQMQSLRAGADVLVATPGRLLDLL 150
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCW 183
+ LK ++V VLDEADR+L G+ ++ + L L +QK Q++L SAT P
Sbjct: 151 A-SNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQK---QTLLFSATF-PEEVR 205
Query: 184 CKHTETLKFSKVEHLVLDEAD----RILDQGYERDIAEFLEILKKQKPQFQSVLLSA--T 237
T+ L HL ++ R++ E+ A ++K+ + + +SA T
Sbjct: 206 ALTTKLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNT 265
Query: 238 LTPAVQRLA 246
Q+L+
Sbjct: 266 CNHLAQKLS 274
Score = 174 (66.3 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 35/117 (29%), Positives = 65/117 (55%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+ + + S+ L+F++ ++ ++ + LS I+ HG +Q RT V F++ +
Sbjct: 248 IKQHQWSQALIFVSAKNTCNHLAQKLSK---RGISAEVFHGDKAQGARTRVLDGFKNGEI 304
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768
VLI TD+AARG+D+ + ++ + P S DY+HR+GR+ R G G ++ + E
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361
Score = 107 (42.7 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 187 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA 246
+ LK ++V VLDEADR+L G+ ++ + L L +QK Q++L SAT V+ L
Sbjct: 152 SNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQK---QTLLFSATFPEEVRALT 208
Query: 247 GMTLQNPIQ 255
L P++
Sbjct: 209 TKLLHQPLE 217
Score = 40 (19.1 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 558 GYERDIAEFLEILKKQKPQ 576
G+E + LE+L ++KPQ
Sbjct: 383 GFEANAEIPLEVLAQEKPQ 401
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 302 (111.4 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 78/225 (34%), Positives = 120/225 (53%)
Query: 382 VSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSG 441
+++A + S+ E I P + L E + T VQ +I +L G DVL + TGSG
Sbjct: 1 MTQASSSVASFAELGIIAP-LGNRLTE-LGYVSPTPVQAATIPAVLSGRDVLAGANTGSG 58
Query: 442 KTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTW---IVP 498
KT A+A+P++Q+L E + + ++++PTRELA Q + F F IV
Sbjct: 59 KTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVA 118
Query: 499 SWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQG 558
++ GG + + +R G +LVATPGRLLD + LK ++V VLDEADR+L G
Sbjct: 119 AF--GGVSVNLQMQSLRAGADVLVATPGRLLDLLA-SNALKLTQVSAFVLDEADRMLSLG 175
Query: 559 YERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+ ++ + L L +QK Q++L SAT V+ L L P++
Sbjct: 176 FTEELEQVLAALPRQK---QTLLFSATFPEEVRALTTKLLHQPLE 217
Score = 285 (105.4 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 81/249 (32%), Positives = 127/249 (51%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T VQ +I +L G DVL + TGSGKT A+A+P++Q+L E + + ++++PT
Sbjct: 33 TPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPT 92
Query: 67 RELALQTLEIFTKLCKSFTW---IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 123
RELA Q + F F IV ++ GG + + +R G +LVATPGRLLD
Sbjct: 93 RELAQQVADSFLSYASHFNGQLKIVAAF--GGVSVNLQMQSLRAGADVLVATPGRLLDLL 150
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCW 183
+ LK ++V VLDEADR+L G+ ++ + L L +QK Q++L SAT P
Sbjct: 151 A-SNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQK---QTLLFSATF-PEEVR 205
Query: 184 CKHTETLKFSKVEHLVLDEAD----RILDQGYERDIAEFLEILKKQKPQFQSVLLSA--T 237
T+ L HL ++ R++ E+ A ++K+ + + +SA T
Sbjct: 206 ALTTKLLHQPLEYHLQSEQESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNT 265
Query: 238 LTPAVQRLA 246
Q+L+
Sbjct: 266 CNHLAQKLS 274
Score = 174 (66.3 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 35/117 (29%), Positives = 65/117 (55%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+ + + S+ L+F++ ++ ++ + LS I+ HG +Q RT V F++ +
Sbjct: 248 IKQHQWSQALIFVSAKNTCNHLAQKLSK---RGISAEVFHGDKAQGARTRVLDGFKNGEI 304
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768
VLI TD+AARG+D+ + ++ + P S DY+HR+GR+ R G G ++ + E
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361
Score = 107 (42.7 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 187 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA 246
+ LK ++V VLDEADR+L G+ ++ + L L +QK Q++L SAT V+ L
Sbjct: 152 SNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQK---QTLLFSATFPEEVRALT 208
Query: 247 GMTLQNPIQ 255
L P++
Sbjct: 209 TKLLHQPLE 217
Score = 40 (19.1 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 558 GYERDIAEFLEILKKQKPQ 576
G+E + LE+L ++KPQ
Sbjct: 383 GFEANAEIPLEVLAQEKPQ 401
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 304 (112.1 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 75/206 (36%), Positives = 116/206 (56%)
Query: 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
+P K + +G + T +Q+ +I IL G DV+ ++TGSGKT + +P+ ++L+
Sbjct: 45 YPVFKGVMKKGYKVP--TPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERLKAPS 102
Query: 459 PKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGI 518
P G A+I+ PTRELALQTL+ FTK FT + + + GG+KM+ + A + +
Sbjct: 103 PS-----GARALILSPTRELALQTLK-FTKELGKFTGLKTALVLGGDKMEDQFAALHENP 156
Query: 519 SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQ 578
I++ATPGRL+ H LK VE++V DEADR+ + G+ + E IL + Q
Sbjct: 157 DIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQE---ILARLPGSHQ 212
Query: 579 SILLSATLTPAVQRLAGMTLQNPIQI 604
++L SATL + A L P+ I
Sbjct: 213 TVLFSATLPKLLVEFARAGLTEPMLI 238
Score = 289 (106.8 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 68/171 (39%), Positives = 103/171 (60%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ +I IL G DV+ ++TGSGKT + +P+ ++L+ P G A+I+ PT
Sbjct: 60 TPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERLKAPSPS-----GARALILSPT 114
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQTL+ FTK FT + + + GG+KM+ + A + + I++ATPGRL+ H
Sbjct: 115 RELALQTLK-FTKELGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRLV-HVAVE 172
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LK VE++V DEADR+ + G+ + E IL + Q++L SATL
Sbjct: 173 MNLKLQSVEYVVFDEADRLFEMGFAEQLQE---ILARLPGSHQTVLFSATL 220
Score = 198 (74.8 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 42/119 (35%), Positives = 71/119 (59%)
Query: 657 ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLIC 716
+ + +VF+AT+ +Y ELL++ + I ++ S+ Q+ R F K VL+
Sbjct: 277 QDQTVVFVATKHHTEYLKELLTS---QGICCTHIYSSLDQTARKINIAKFAHGKCQVLLV 333
Query: 717 TDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
TDVAARGLD+P++D ++ Y+ P+ S ++HRVGR AR G G++ + P E+ + +L
Sbjct: 334 TDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEMPYIFDL 392
Score = 98 (39.6 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
LK VE++V DEADR+ + G+ + E IL + Q+VL SATL + A
Sbjct: 175 LKLQSVEYVVFDEADRLFEMGFAEQLQE---ILARLPGSHQTVLFSATLPKLLVEFARAG 231
Query: 250 LQNPIQI 256
L P+ I
Sbjct: 232 LTEPMLI 238
Score = 37 (18.1 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 637 RLVALASFILGKCQ 650
R + +A F GKCQ
Sbjct: 316 RKINIAKFAHGKCQ 329
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 277 (102.6 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 69/206 (33%), Positives = 117/206 (56%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 286
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L++ I I+ A + + HN
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHN 312
Score = 261 (96.9 bits), Expect = 9.7e-39, Sum P(2) = 9.7e-39
Identities = 60/175 (34%), Positives = 101/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 230
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 281
Score = 238 (88.8 bits), Expect = 9.7e-39, Sum P(2) = 9.7e-39
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ I I+ + ++ + L I D
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC-- 320
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D EL + +
Sbjct: 321 HDVEKDEKLIRLM----------EEIMSEKENKTIVFVETKRRCD---ELTRKMRRDGWP 367
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 368 AMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 423 (154.0 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 126/402 (31%), Positives = 211/402 (52%)
Query: 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE---MR 458
++KN+++ +++T VQ+ SI I G D++ +QTGSGKT A+ +PI+ ++ +
Sbjct: 178 LRKNISK-TGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTA 236
Query: 459 PKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF--TWIVPSWLTGGEKMKSEKARIRK 516
++ +I+ PTREL Q IF + K T I P + GG + +I +
Sbjct: 237 SAFQKQQEPQCIIVAPTRELINQ---IFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQ 293
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK-QKP 575
G +IL ATPGRLLD + + + +V++LVLDEADR+LD G+ D+ + + + K
Sbjct: 294 GCNILCATPGRLLDIIEKGK-ISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKD 352
Query: 576 QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK 635
+ Q+++ SAT VQRLAG L+ I NT + ++Q+ + P
Sbjct: 353 RRQTLMFSATFPEEVQRLAGEFLKTDYIFLV-----IGNTCGAC---SDVQQNILQVPRL 404
Query: 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMS 695
+ L + Q+ + + +VF+ T+ ADY L + + EN+ +HG
Sbjct: 405 SKRDKLIEIL----QSTGGE---RTMVFVDTKKKADY---LAAFLCQENLPSTSIHGDRE 454
Query: 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755
Q ER + FRS K +L+ T VA+RGLD+ V ++ + P++ DYVHR+GRT R G
Sbjct: 455 QREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCG 514
Query: 756 HEGSSLLF--------LIPSEVKLVEELQNR-RIRIEEIKLK 788
+ G ++ F L+ S +K++ E Q + +EE+ ++
Sbjct: 515 NTGKAVSFFDDQSDGHLVQSLLKVLSEAQQEVPVWLEEMAVQ 556
Score = 228 (85.3 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 63/179 (35%), Positives = 102/179 (56%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE---MRPKISRKDGIYA 60
+++T VQ+ SI I G D++ +QTGSGKT A+ +PI+ ++ + ++
Sbjct: 188 SKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQC 247
Query: 61 VIILPTRELALQTLEIFTKLCKSF--TWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
+I+ PTREL Q IF + K T I P + GG + +I +G +IL ATPGR
Sbjct: 248 IIVAPTRELINQ---IFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGR 304
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK-QKPQFQSILLSAT 176
LLD + + + +V++LVLDEADR+LD G+ D+ + + + K + Q+++ SAT
Sbjct: 305 LLDIIEKGK-ISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSAT 362
Score = 38 (18.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 289 RLVALASFILGKCQ 302
R +AL F GKCQ
Sbjct: 458 REIALRDFRSGKCQ 471
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 277 (102.6 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 69/206 (33%), Positives = 117/206 (56%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 170 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 228
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 229 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 287
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 288 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 343
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L++ I I+ A + + HN
Sbjct: 344 RQLAEDFLKDYIHINIGALELSANHN 369
Score = 261 (96.9 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 60/175 (34%), Positives = 101/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 170 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 228
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + C++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 229 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 287
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 288 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 338
Score = 239 (89.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ I I+ + ++ + L I D
Sbjct: 321 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC-- 377
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D EL + +
Sbjct: 378 HDVEKDEKLIRLM----------EEIMSEKENKTIVFVETKRRCD---ELTRKMRRDGWP 424
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 425 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 484
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 485 RIGRTARSTKTGTAYTFFTPNNIKQVSDL 513
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 273 (101.2 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 81/280 (28%), Positives = 144/280 (51%)
Query: 344 DPDNYEIPKKTEVKS-GPISSLFQ-NNPDIPNVPT------RRLKPVS-EALFAPTSYEE 394
D D E P+K ++ P F +P + + R+L+ ++ E P +
Sbjct: 41 DNDGNESPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKS 100
Query: 395 FP--GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQ 452
F G ++ + + + T+ T +Q + G D++ ++TGSGKTL+Y +P I
Sbjct: 101 FRDVGFPDYVLEEVKKA-GFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 453 KLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA 512
+ +P ++ DG +++ PTRELA+Q + +K S + I + + GG +
Sbjct: 160 HVNA-QPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSS-SKIKTTCIYGGVPKGPQVR 217
Query: 513 RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572
++KG+ I++ATPGRL+D + T +V +LVLDEADR+LD G++ I + I+
Sbjct: 218 DLQKGVEIVIATPGRLIDMMESNNT-NLRRVTYLVLDEADRMLDMGFDPQIRK---IVSH 273
Query: 573 QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDI 612
+P Q++ SAT V++L+ L NP ++ S+D+
Sbjct: 274 IRPDRQTLYWSATWPKEVEQLSKKFLYNPYKV-IIGSSDL 312
Score = 249 (92.7 bits), Expect = 7.3e-36, Sum P(2) = 7.3e-36
Identities = 64/187 (34%), Positives = 104/187 (55%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
T+ T +Q + G D++ ++TGSGKTL+Y +P I + +P ++ DG +++
Sbjct: 120 TEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA-QPMLAHGDGPIVLVL 178
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 123
PTRELA+Q + +K S + I + + GG + ++KG+ I++ATPGRL+D
Sbjct: 179 APTRELAVQIQQEASKFGSS-SKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMM 237
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCW 183
+ T +V +LVLDEADR+LD G++ I + I+ +P Q++ SAT W
Sbjct: 238 ESNNT-NLRRVTYLVLDEADRMLDMGFDPQIRK---IVSHIRPDRQTLYWSAT------W 287
Query: 184 CKHTETL 190
K E L
Sbjct: 288 PKEVEQL 294
Score = 219 (82.2 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 48/120 (40%), Positives = 68/120 (56%)
Query: 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717
S++LVF+ T+ D T L + +HG SQ+ER V FRS KS ++ T
Sbjct: 345 SRILVFLDTKKGCDQITRQLRM---DGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTAT 401
Query: 718 DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
DVAARGLD+ V +++ Y P S DYVHR+GRT R G +G++ F + + +EL N
Sbjct: 402 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTN 461
Score = 102 (41.0 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 194 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNP 253
+V +LVLDEADR+LD G++ I + I+ +P Q++ SAT V++L+ L NP
Sbjct: 246 RVTYLVLDEADRMLDMGFDPQIRK---IVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNP 302
Query: 254 IQIDAADSTDI 264
++ S+D+
Sbjct: 303 YKV-IIGSSDL 312
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 310 (114.2 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 74/206 (35%), Positives = 117/206 (56%)
Query: 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
+P K + +G + T +Q+ +I ILDG DV+ ++TGSGKT A+ +P+ +KL+
Sbjct: 87 YPVYKGIMKKGYKVP--TPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEKLKA-- 142
Query: 459 PKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGI 518
P+ + G A+I+ PTRELALQT++ FTK FT + + + GG+ M + A + +
Sbjct: 143 PQA--QTGARALILTPTRELALQTMK-FTKELGKFTGLRTALILGGDSMDDQFAALHENP 199
Query: 519 SILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQ 578
I++ TPGRL+ H LK VE++V DEADR+ + G+ + E + L + Q
Sbjct: 200 DIIIGTPGRLM-HVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDAR---Q 255
Query: 579 SILLSATLTPAVQRLAGMTLQNPIQI 604
++L SATL + A L P+ I
Sbjct: 256 TLLFSATLPKLIVEFARAGLTEPVLI 281
Score = 292 (107.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 67/171 (39%), Positives = 104/171 (60%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ +I ILDG DV+ ++TGSGKT A+ +P+ +KL+ P+ + G A+I+ PT
Sbjct: 102 TPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEKLKA--PQA--QTGARALILTPT 157
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQT++ FTK FT + + + GG+ M + A + + I++ TPGRL+ H
Sbjct: 158 RELALQTMK-FTKELGKFTGLRTALILGGDSMDDQFAALHENPDIIIGTPGRLM-HVIQE 215
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LK VE++V DEADR+ + G+ + E + L + Q++L SATL
Sbjct: 216 MNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDAR---QTLLFSATL 263
Score = 191 (72.3 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 48/140 (34%), Positives = 78/140 (55%)
Query: 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMS 695
LRL + +L +NV + +E + +VF+AT+ +Y ELLS E + ++ ++
Sbjct: 300 LRLDDKPALLLHLLRNVVKPQE-QTVVFVATKHHVEYLKELLSA---EGVDCSCIYSALD 355
Query: 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755
Q+ R F K +L+ TDVAARG+D+PL+D ++ Y P ++HRVGR AR G
Sbjct: 356 QTARKISIGRFVHRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAG 415
Query: 756 HEGSSLLFLIPSEVKLVEEL 775
G++ + P EV + +L
Sbjct: 416 RGGTAYSLVCPDEVPYLYDL 435
Score = 102 (41.0 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 45/162 (27%), Positives = 72/162 (44%)
Query: 96 EKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIA 155
EK+K+ +A+ G L+ TP R L +T+KF+K ++ G D
Sbjct: 138 EKLKAPQAQT--GARALILTPTRELA----LQTMKFTKELGKFTGLRTALILGGDSMD-D 190
Query: 156 EFLEILKKQKPQFQSILLSATLTPATCWCKHTE-TLKFSKVEHLVLDEADRILDQGYERD 214
+F + + P I++ TP E LK VE++V DEADR+ + G+
Sbjct: 191 QFAAL--HENPD---IIIG---TPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQ 242
Query: 215 IAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+ E + L + Q++L SATL + A L P+ I
Sbjct: 243 LQEIIRRLPDAR---QTLLFSATLPKLIVEFARAGLTEPVLI 281
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 422 (153.6 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 123/381 (32%), Positives = 201/381 (52%)
Query: 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE---MR 458
++KN+++ +++T VQ+ SI I G D++ +QTGSGKT A+ +PI+ ++ +
Sbjct: 178 LRKNISK-TGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTA 236
Query: 459 PKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF--TWIVPSWLTGGEKMKSEKARIRK 516
++ +I+ PTREL Q IF + K T I P + GG + +I +
Sbjct: 237 SAFQKQQEPQCIIVAPTRELINQ---IFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQ 293
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK-QKP 575
G +IL ATPGRLLD + + + +V++LVLDEADR+LD G+ D+ + + + K
Sbjct: 294 GCNILCATPGRLLDIIEKGK-ISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKD 352
Query: 576 QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPK 635
+ Q+++ SAT VQRLAG L+ I NT + ++Q+ + P
Sbjct: 353 RRQTLMFSATFPEEVQRLAGEFLKTDYIFLV-----IGNTCGAC---SDVQQNILQVPRL 404
Query: 636 LRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMS 695
+ L + Q+ + + +VF+ T+ ADY L + + EN+ +HG
Sbjct: 405 SKRDKLIEIL----QSTGGE---RTMVFVDTKKKADY---LAAFLCQENLPSTSIHGDRE 454
Query: 696 QSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVG 755
Q ER + FRS K +L+ T VA+RGLD+ V ++ + P++ DYVHR+GRT R G
Sbjct: 455 QREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCG 514
Query: 756 HEGSSLLFLIP-SEVKLVEEL 775
+ G ++ F S+ LV+ L
Sbjct: 515 NTGKAVSFFDDQSDGHLVQSL 535
Score = 228 (85.3 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 63/179 (35%), Positives = 102/179 (56%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE---MRPKISRKDGIYA 60
+++T VQ+ SI I G D++ +QTGSGKT A+ +PI+ ++ + ++
Sbjct: 188 SKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQC 247
Query: 61 VIILPTRELALQTLEIFTKLCKSF--TWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
+I+ PTREL Q IF + K T I P + GG + +I +G +IL ATPGR
Sbjct: 248 IIVAPTRELINQ---IFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGR 304
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK-QKPQFQSILLSAT 176
LLD + + + +V++LVLDEADR+LD G+ D+ + + + K + Q+++ SAT
Sbjct: 305 LLDIIEKGK-ISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSAT 362
Score = 38 (18.4 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 289 RLVALASFILGKCQ 302
R +AL F GKCQ
Sbjct: 458 REIALRDFRSGKCQ 471
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 308 (113.5 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 96/303 (31%), Positives = 150/303 (49%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ +F G+ + K + E T T +Q+ +I IL GGDV +QTG+GKT A+ +P
Sbjct: 4 TTFADF-GLAENILKAVTES-GYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLP 61
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+IQ+L R + +R +I+ PTRELA Q E F K K + + + L GG K
Sbjct: 62 MIQRLSTGRAR-ARMPR--CLILCPTRELAAQVAENFEKYGK-YLKLTMALLIGGVSFKE 117
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
++ +++G+ +L+ATPGRL+D + L VE L++DEADR+LD G+ DI + I
Sbjct: 118 QETLLQRGVDVLIATPGRLMDQFDRGKLLMMG-VETLIIDEADRMLDMGFIPDIEK---I 173
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629
K Q++L SAT +QRLA ++P +I+ T V+
Sbjct: 174 CAKLPANRQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGK 233
Query: 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ---DMADYHTELLSTVLGENIA 686
LR V A+ + N E ++ T+ D A H +L +V E +
Sbjct: 234 -ARRTALRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQ 292
Query: 687 FFK 689
F+
Sbjct: 293 RFR 295
Score = 272 (100.8 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 68/170 (40%), Positives = 101/170 (59%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q+ +I IL GGDV +QTG+GKT A+ +P+IQ+L R + +R +I+ PT
Sbjct: 28 TPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRAR-ARMPR--CLILCPT 84
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E F K K + + + L GG K ++ +++G+ +L+ATPGRL+D
Sbjct: 85 RELAAQVAENFEKYGK-YLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRLMDQFDRG 143
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ L VE L++DEADR+LD G+ DI + I K Q++L SAT
Sbjct: 144 KLLMMG-VETLIIDEADRMLDMGFIPDIEK---ICAKLPANRQTLLFSAT 189
Score = 206 (77.6 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 65/208 (31%), Positives = 93/208 (44%)
Query: 563 IAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622
I + +I K Q++L SAT +QRLA ++P +I+ T V+
Sbjct: 167 IPDIEKICAKLPANRQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVK 226
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
K R AL I + NV +VF + D L T G
Sbjct: 227 ------LPTNDGKARRTALRRVI--EATNVKNG-----IVFCNRKVEVDIVAASL-TKHG 272
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+ A +HG + QS R+E + FR K +L+ +DVAARGLD+P V + + P
Sbjct: 273 HDAA--PIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDE 330
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVK 770
DYVHR+GRT R G G S + P++ K
Sbjct: 331 DYVHRIGRTGRAGRTGESYTVVTPADDK 358
Score = 58 (25.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 798 KMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKG 839
K +GD++ +AD VET AT + E A +Q+K A +G
Sbjct: 433 KEDGDVA-VADAPVETVATETVEAAEPAAVQEKPKRERAPRG 473
Score = 39 (18.8 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 458 RPKISRKDGIYAVIILPTRELALQTLE 484
R + ++DG AV P +A +T+E
Sbjct: 428 RRRREKEDGDVAVADAPVETVATETVE 454
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 294 (108.6 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 68/198 (34%), Positives = 110/198 (55%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
+ T T +Q L+I P+L G DVL +QTG+GKT A+ +P + K+ I +
Sbjct: 33 IGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKIDT---SIKKPQ---L 86
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
+++ PTRELA+Q E K + + L GG+ + ++ +G ++V TPGRL+
Sbjct: 87 MVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLM 146
Query: 530 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 589
DH + ++LK ++ VLDEAD +L+ G+ DI L+ + K Q L SAT+ PA
Sbjct: 147 DHLRR-KSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTA---QMCLFSATMPPA 202
Query: 590 VQRLAGMTLQNPIQIDAA 607
++++A L++P I A
Sbjct: 203 IRKIANRFLKDPEHIKVA 220
Score = 268 (99.4 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 63/180 (35%), Positives = 99/180 (55%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ T T +Q L+I P+L G DVL +QTG+GKT A+ +P + K+ I +
Sbjct: 33 IGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKIDT---SIKKPQ---L 86
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA+Q E K + + L GG+ + ++ +G ++V TPGRL+
Sbjct: 87 MVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLM 146
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
DH + ++LK ++ VLDEAD +L+ G+ DI L+ + K Q L SAT+ PA
Sbjct: 147 DHLRR-KSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTA---QMCLFSATMPPA 202
Score = 200 (75.5 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 46/126 (36%), Positives = 69/126 (54%)
Query: 656 EESKMLVFMATQ-DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714
E M++F+ T+ D D E L +A L+G ++Q++R +S KS +L
Sbjct: 253 EYDAMIIFVRTRNDTVDI-AEKLERAGYPALA---LNGDLNQAQRERCIDQMKSGKSSIL 308
Query: 715 ICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKL 771
+ TDV ARGLD+P + ++ Y P + YVHR+GRT R G EG S+ F+ P E ++
Sbjct: 309 VATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRH 368
Query: 772 VEELQN 777
E L N
Sbjct: 369 YERLTN 374
Score = 119 (46.9 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 51/208 (24%), Positives = 87/208 (41%)
Query: 59 YAVIILPTRELALQTLEI-FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 117
+A + LP L+ L I FT +P L G + + + K + +
Sbjct: 17 FASLGLPENLLSA-VLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALA 75
Query: 118 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK--PQFQSILLSA 175
++ K + + + L + A+ I G + + Q PQFQ + A
Sbjct: 76 KIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGA 135
Query: 176 TL---TPATCWCK-HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS 231
+ TP ++LK ++ VLDEAD +L+ G+ DI L+ + K Q
Sbjct: 136 QVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTA---QM 192
Query: 232 VLLSATLTPAVQRLAGMTLQNPIQIDAA 259
L SAT+ PA++++A L++P I A
Sbjct: 193 CLFSATMPPAIRKIANRFLKDPEHIKVA 220
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 299 (110.3 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 75/196 (38%), Positives = 113/196 (57%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
+ +QQ SI IL G D++ ++QTG+GKT A+A+PI+ ++ P S+++ A+I+ PT
Sbjct: 30 SAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRID---P--SKREP-QALILAPT 83
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 535
RELALQ F K + + GG M + IR G I+VATPGRL DH +
Sbjct: 84 RELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRD 143
Query: 536 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF-QSILLSATLTPAVQRLA 594
E + + V HLVLDEAD +L G+ D LE++ K P+ Q++L SATL +++ +A
Sbjct: 144 EKV-LATVNHLVLDEADEMLKLGFMDD----LEVIFKAMPETRQTVLFSATLPQSIRAIA 198
Query: 595 GMTLQNPIQIDAADST 610
L++P + T
Sbjct: 199 ERHLKDPKHVKIQSKT 214
Score = 283 (104.7 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 96/279 (34%), Positives = 143/279 (51%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
+ +QQ SI IL G D++ ++QTG+GKT A+A+PI+ ++ P S+++ A+I+ PT
Sbjct: 30 SAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRID---P--SKREP-QALILAPT 83
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ F K + + GG M + IR G I+VATPGRL DH +
Sbjct: 84 RELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRD 143
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF-QSILLSATLTP-----A 180
E + + V HLVLDEAD +L G+ D LE++ K P+ Q++L SATL A
Sbjct: 144 EKV-LATVNHLVLDEADEMLKLGFMDD----LEVIFKAMPETRQTVLFSATLPQSIRAIA 198
Query: 181 TCWCKHTETLKF-SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT 239
K + +K SK + + E +L ++ A L +L+ + F ++++
Sbjct: 199 ERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSA-VLSLLEVE--DFDALIMFVRTK 255
Query: 240 PAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 278
A LA L+ AA + DI VI DSLK
Sbjct: 256 QATLDLAS-ALEAKGYKAAALNGDIAQNQRERVI-DSLK 292
Score = 192 (72.6 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 42/148 (28%), Positives = 83/148 (56%)
Query: 654 EDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713
ED ++ +++F+ T+ +L S + + L+G ++Q++R V + + + +
Sbjct: 243 EDFDA-LIMFVRTKQAT---LDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 714 LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVE 773
++ TDVAARGLD+P + + P YVHR+GRT R G EG +LL + P E ++++
Sbjct: 299 VVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQ 358
Query: 774 ELQN-RRIRIEEIKLKDCLQNLLSVKME 800
++ ++ E++L D Q +L +++
Sbjct: 359 VIERVTGQKVAEVRLPDA-QAVLDARIK 385
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 311 (114.5 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 96/292 (32%), Positives = 155/292 (53%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++EE G ++ K + + + T +QQ + + G D++ S TGSGKTL+Y +P
Sbjct: 122 TTFEE-AGFPNYVLKEVKQ-LGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLP 179
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
I + +P +S DG +++ PTRELA+Q + TK KS + I + + GG
Sbjct: 180 AIVHINA-QPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKS-SRIRNTCVYGGVPRGP 237
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ + +G+ I +ATPGRLLD +T +V +LVLDEADR+LD G+E I + ++
Sbjct: 238 QIRDLIRGVEICIATPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQ 296
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDI---HNTTDSLVIPDSLK 626
++ P Q+++ SAT VQRLA L + IQ+ S D+ HN + + D+
Sbjct: 297 IR---PDRQTVMFSATWPKEVQRLARDYLNDYIQVTVG-SLDLAASHNIKQIVEVVDNAD 352
Query: 627 QHFIVTPPKLRLVALASFILGK-CQNVNEDEESKMLVFMATQDMADYHTELL 677
+ + RL GK + V +D ++K+L+F T+ +AD T L
Sbjct: 353 K-------RARL--------GKDIEEVLKDRDNKVLIFTGTKRVADDITRFL 389
Score = 257 (95.5 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 64/170 (37%), Positives = 100/170 (58%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +QQ + + G D++ S TGSGKTL+Y +P I + +P +S DG +++ PT
Sbjct: 146 TPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINA-QPLLSPGDGPIVLVLAPT 204
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA+Q + TK KS + I + + GG + + +G+ I +ATPGRLLD
Sbjct: 205 RELAVQIQQECTKFGKS-SRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSN 263
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+T +V +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 264 KT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTVMFSAT 309
Score = 237 (88.5 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 65/208 (31%), Positives = 104/208 (50%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT VQRLA L + IQ+ S D L ++KQ
Sbjct: 292 KIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVG-SLD-------LAASHNIKQ 343
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
V + L I + V +D ++K+L+F T+ +AD T L +
Sbjct: 344 IVEVVDNADKRARLGKDI----EEVLKDRDNKVLIFTGTKRVADDITRFLRQ---DGWPA 396
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG +Q ER V FR+ KS +++ TDVA+RG+D+ + + Y P ++ DYVHR
Sbjct: 397 LAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHR 456
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRT R G +G++ + K EL
Sbjct: 457 IGRTGRAGAKGTAYTYFTSDNAKQAREL 484
Score = 136 (52.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 47/140 (33%), Positives = 74/140 (52%)
Query: 194 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNP 253
+V +LVLDEADR+LD G+E I + ++ ++ P Q+V+ SAT VQRLA L +
Sbjct: 269 RVTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTVMFSATWPKEVQRLARDYLNDY 325
Query: 254 IQIDAADSTDI---HNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK-CQNVNEDEE 309
IQ+ S D+ HN + + D+ + + RL GK + V +D +
Sbjct: 326 IQVTVG-SLDLAASHNIKQIVEVVDNADK-------RARL--------GKDIEEVLKDRD 369
Query: 310 SKMLVFMATQDMADYHTELL 329
+K+L+F T+ +AD T L
Sbjct: 370 NKVLIFTGTKRVADDITRFL 389
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 440 (159.9 bits), Expect = 2.0e-38, P = 2.0e-38
Identities = 127/393 (32%), Positives = 198/393 (50%)
Query: 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPK 460
M++N+ E T+ T +QQ ++ + DG D+L +QTGSGKT A+ +PI+ +L E
Sbjct: 309 MRRNV-ERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLN 367
Query: 461 ISRKDGIY--AVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKG 517
+ G Y +I+ PTRELA Q K +S I P + GG + K++I KG
Sbjct: 368 YGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVY--GGINVGYNKSQIMKG 425
Query: 518 ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQK-P 575
+I+V T GR+ C+ +K K +LVLDEADR++D G+ +I + + K
Sbjct: 426 CTIIVGTIGRVKHFCEDG-AIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKND 484
Query: 576 QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD-SLKQHFIVTPP 634
+ Q+++ SAT +VQ A L+ + D N VI + L
Sbjct: 485 KRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAAN---KCVIQEFELCDRTSKVDK 541
Query: 635 KLRLVALASFILGKCQNVNEDE-ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGS 693
L+L+ + I N D K +VF+A Q MAD ++S + +HG+
Sbjct: 542 LLKLLGID--IDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAA---QVPAITIHGA 596
Query: 694 MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR 753
Q ER+ K FRS VLI T V RGLD+ VD ++ Y P++ DY+HR+GRT R
Sbjct: 597 REQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGR 656
Query: 754 VGHEGSSLLFL-IPSEVKLVEELQNRRIRIEEI 785
VG+ G + F+ + +V+++ +L E++
Sbjct: 657 VGNSGRATSFISLADDVQILPQLVRTLADAEQV 689
Score = 235 (87.8 bits), Expect = 6.6e-16, P = 6.6e-16
Identities = 64/179 (35%), Positives = 99/179 (55%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIY--A 60
T+ T +QQ ++ + DG D+L +QTGSGKT A+ +PI+ +L E + G Y
Sbjct: 319 TRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRC 378
Query: 61 VIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
+I+ PTRELA Q K +S I P + GG + K++I KG +I+V T GR+
Sbjct: 379 IILTPTRELADQIYNEGRKFSYQSVMEIKPVY--GGINVGYNKSQIMKGCTIIVGTIGRV 436
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQK-PQFQSILLSAT 176
C+ +K K +LVLDEADR++D G+ +I + + K + Q+++ SAT
Sbjct: 437 KHFCEDG-AIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSAT 494
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 440 (159.9 bits), Expect = 2.0e-38, P = 2.0e-38
Identities = 127/393 (32%), Positives = 198/393 (50%)
Query: 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPK 460
M++N+ E T+ T +QQ ++ + DG D+L +QTGSGKT A+ +PI+ +L E
Sbjct: 309 MRRNV-ERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLN 367
Query: 461 ISRKDGIY--AVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKG 517
+ G Y +I+ PTRELA Q K +S I P + GG + K++I KG
Sbjct: 368 YGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVY--GGINVGYNKSQIMKG 425
Query: 518 ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQK-P 575
+I+V T GR+ C+ +K K +LVLDEADR++D G+ +I + + K
Sbjct: 426 CTIIVGTIGRVKHFCEDG-AIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKND 484
Query: 576 QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPD-SLKQHFIVTPP 634
+ Q+++ SAT +VQ A L+ + D N VI + L
Sbjct: 485 KRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAAN---KCVIQEFELCDRTSKVDK 541
Query: 635 KLRLVALASFILGKCQNVNEDE-ESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGS 693
L+L+ + I N D K +VF+A Q MAD ++S + +HG+
Sbjct: 542 LLKLLGID--IDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAA---QVPAITIHGA 596
Query: 694 MSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTAR 753
Q ER+ K FRS VLI T V RGLD+ VD ++ Y P++ DY+HR+GRT R
Sbjct: 597 REQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGR 656
Query: 754 VGHEGSSLLFL-IPSEVKLVEELQNRRIRIEEI 785
VG+ G + F+ + +V+++ +L E++
Sbjct: 657 VGNSGRATSFISLADDVQILPQLVRTLADAEQV 689
Score = 235 (87.8 bits), Expect = 6.6e-16, P = 6.6e-16
Identities = 64/179 (35%), Positives = 99/179 (55%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIY--A 60
T+ T +QQ ++ + DG D+L +QTGSGKT A+ +PI+ +L E + G Y
Sbjct: 319 TRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRC 378
Query: 61 VIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
+I+ PTRELA Q K +S I P + GG + K++I KG +I+V T GR+
Sbjct: 379 IILTPTRELADQIYNEGRKFSYQSVMEIKPVY--GGINVGYNKSQIMKGCTIIVGTIGRV 436
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQ-GYERDIAEFLEILKKQK-PQFQSILLSAT 176
C+ +K K +LVLDEADR++D G+ +I + + K + Q+++ SAT
Sbjct: 437 KHFCEDG-AIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSAT 494
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 443 (161.0 bits), Expect = 2.2e-38, P = 2.2e-38
Identities = 126/414 (30%), Positives = 215/414 (51%)
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465
+++ + + + +Q ++ IL G DV+ ++TGSGKTL+Y +P+++ +Q+ + S+ +
Sbjct: 308 IHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQ--FSKDN 365
Query: 466 -GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
G +I+ PTRELALQ + K + GG ++++ ++KG+ I+V T
Sbjct: 366 QGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGT 425
Query: 525 PGRLLD--HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILL 582
PGR++D L + +VLDEADR+ D G+E + + IL + +P Q++L
Sbjct: 426 PGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNK---ILTQIRPDRQTVLF 482
Query: 583 SATLTPAVQRLAGMTLQNPIQIDAAD-STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVAL 641
SAT ++ LA L +P+ I S +V+ ++ + K + V
Sbjct: 483 SATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEE--QDKYKQQRVEK 540
Query: 642 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701
IL Q E +SK+LVF Q+ AD EL++ +L +HG Q +R
Sbjct: 541 LHDILTNYQI--EHPDSKILVFTEKQNDAD---ELVANLLSNKYPAIAIHGGKDQMDRKY 595
Query: 702 VFKTFRSVKSGV--LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGS 759
K F S+ SG+ LI T +AARGLD+ + ++ + P+ DYVHRVGRT R G +G+
Sbjct: 596 AIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGN 655
Query: 760 SLLFLI---PSEV-KLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADG 809
++ F+ P EV LV+ L+ I+ KL++ + N K++ +++ G
Sbjct: 656 AITFVSSSQPKEVFNLVKALKLSHSDIDP-KLEE-IANKFVTKVKAGKEKISSG 707
Score = 242 (90.2 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 58/173 (33%), Positives = 99/173 (57%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD-GIYAVIILP 65
+ +Q ++ IL G DV+ ++TGSGKTL+Y +P+++ +Q+ + S+ + G +I+ P
Sbjct: 318 SAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQ--FSKDNQGPIGLILSP 375
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD--HC 123
TRELALQ + K + GG ++++ ++KG+ I+V TPGR++D
Sbjct: 376 TRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAA 435
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
L + +VLDEADR+ D G+E + + IL + +P Q++L SAT
Sbjct: 436 NSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNK---ILTQIRPDRQTVLFSAT 485
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 443 (161.0 bits), Expect = 2.2e-38, P = 2.2e-38
Identities = 126/414 (30%), Positives = 215/414 (51%)
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD 465
+++ + + + +Q ++ IL G DV+ ++TGSGKTL+Y +P+++ +Q+ + S+ +
Sbjct: 308 IHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQ--FSKDN 365
Query: 466 -GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
G +I+ PTRELALQ + K + GG ++++ ++KG+ I+V T
Sbjct: 366 QGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGT 425
Query: 525 PGRLLD--HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILL 582
PGR++D L + +VLDEADR+ D G+E + + IL + +P Q++L
Sbjct: 426 PGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNK---ILTQIRPDRQTVLF 482
Query: 583 SATLTPAVQRLAGMTLQNPIQIDAAD-STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVAL 641
SAT ++ LA L +P+ I S +V+ ++ + K + V
Sbjct: 483 SATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEE--QDKYKQQRVEK 540
Query: 642 ASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTE 701
IL Q E +SK+LVF Q+ AD EL++ +L +HG Q +R
Sbjct: 541 LHDILTNYQI--EHPDSKILVFTEKQNDAD---ELVANLLSNKYPAIAIHGGKDQMDRKY 595
Query: 702 VFKTFRSVKSGV--LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGS 759
K F S+ SG+ LI T +AARGLD+ + ++ + P+ DYVHRVGRT R G +G+
Sbjct: 596 AIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGN 655
Query: 760 SLLFLI---PSEV-KLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADG 809
++ F+ P EV LV+ L+ I+ KL++ + N K++ +++ G
Sbjct: 656 AITFVSSSQPKEVFNLVKALKLSHSDIDP-KLEE-IANKFVTKVKAGKEKISSG 707
Score = 242 (90.2 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 58/173 (33%), Positives = 99/173 (57%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD-GIYAVIILP 65
+ +Q ++ IL G DV+ ++TGSGKTL+Y +P+++ +Q+ + S+ + G +I+ P
Sbjct: 318 SAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQ--FSKDNQGPIGLILSP 375
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD--HC 123
TRELALQ + K + GG ++++ ++KG+ I+V TPGR++D
Sbjct: 376 TRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAA 435
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
L + +VLDEADR+ D G+E + + IL + +P Q++L SAT
Sbjct: 436 NSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNK---ILTQIRPDRQTVLFSAT 485
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 287 (106.1 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 79/231 (34%), Positives = 122/231 (52%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
G+ + KNL N Q T +QQ +I + G D+L S+TGSGKTLA+ +P++ K +
Sbjct: 11 GLDNRLLKNLAH-YNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLK 69
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
+ S KD +I++PTRELA Q + ++ + +TGGE + + +
Sbjct: 70 TKA-FSAKDP-RGLILVPTRELAKQVYGELRSMLGGLSYTA-TLITGGENFNDQVKALAR 126
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
G +VATPGRL DH H +L +E LVLDEADR+LD G+ +++ K ++ Q
Sbjct: 127 GPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQ 185
Query: 577 FQSILLSATLTPA-VQRLAGMTLQNPIQIDAADSTDIH-NTTDSLVIPDSL 625
+++ SATL A V +A L P +I ++ H + T + D L
Sbjct: 186 --TLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHL 234
Score = 272 (100.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 66/179 (36%), Positives = 101/179 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N Q T +QQ +I + G D+L S+TGSGKTLA+ +P++ K + + S KD +
Sbjct: 24 NFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLKTKA-FSAKDP-RGL 81
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
I++PTRELA Q + ++ + +TGGE + + +G +VATPGRL D
Sbjct: 82 ILVPTRELAKQVYGELRSMLGGLSYTA-TLITGGENFNDQVKALARGPRFIVATPGRLAD 140
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
H H +L +E LVLDEADR+LD G+ +++ K ++ Q +++ SATL A
Sbjct: 141 HLDH-RSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQ--TLMFSATLDHA 196
Score = 196 (74.1 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 43/131 (32%), Positives = 73/131 (55%)
Query: 656 EESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715
E ++++F AT+ D TE L+ N+ L G+++Q++R + F +L+
Sbjct: 249 EYRQVIIFTATRADTDRLTEKLNQ---NNLKAVALSGNLNQTQRNTIMGQFERAVFKILV 305
Query: 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLV 772
TDVA+RGLD+P V ++ + P + +YVHRVGRT R G++G ++ + P + K V
Sbjct: 306 TTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRV 365
Query: 773 EELQNRRIRIE 783
E + I+ E
Sbjct: 366 EAFLQQEIQFE 376
Score = 95 (38.5 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 40/137 (29%), Positives = 64/137 (46%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA-VQRLAGMTLQNP 253
+E LVLDEADR+LD G+ +++ K ++ Q +++ SATL A V +A L P
Sbjct: 152 LETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQ--TLMFSATLDHADVNDMAMELLNEP 209
Query: 254 IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKML 313
+I ++ H + QHF + AL IL + E +++
Sbjct: 210 KRIAIGVGSEEHK---------DITQHFYLCDHLDHKEALLDRILA------DAEYRQVI 254
Query: 314 VFMATQDMADYHTELLS 330
+F AT+ D TE L+
Sbjct: 255 IFTATRADTDRLTEKLN 271
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 287 (106.1 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 79/231 (34%), Positives = 122/231 (52%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
G+ + KNL N Q T +QQ +I + G D+L S+TGSGKTLA+ +P++ K +
Sbjct: 11 GLDNRLLKNLAH-YNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLK 69
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
+ S KD +I++PTRELA Q + ++ + +TGGE + + +
Sbjct: 70 TKA-FSAKDP-RGLILVPTRELAKQVYGELRSMLGGLSYTA-TLITGGENFNDQVKALAR 126
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
G +VATPGRL DH H +L +E LVLDEADR+LD G+ +++ K ++ Q
Sbjct: 127 GPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQ 185
Query: 577 FQSILLSATLTPA-VQRLAGMTLQNPIQIDAADSTDIH-NTTDSLVIPDSL 625
+++ SATL A V +A L P +I ++ H + T + D L
Sbjct: 186 --TLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHL 234
Score = 272 (100.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 66/179 (36%), Positives = 101/179 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N Q T +QQ +I + G D+L S+TGSGKTLA+ +P++ K + + S KD +
Sbjct: 24 NFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSLKTKA-FSAKDP-RGL 81
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
I++PTRELA Q + ++ + +TGGE + + +G +VATPGRL D
Sbjct: 82 ILVPTRELAKQVYGELRSMLGGLSYTA-TLITGGENFNDQVKALARGPRFIVATPGRLAD 140
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
H H +L +E LVLDEADR+LD G+ +++ K ++ Q +++ SATL A
Sbjct: 141 HLDH-RSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQ--TLMFSATLDHA 196
Score = 196 (74.1 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 43/131 (32%), Positives = 73/131 (55%)
Query: 656 EESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715
E ++++F AT+ D TE L+ N+ L G+++Q++R + F +L+
Sbjct: 249 EYRQVIIFTATRADTDRLTEKLNQ---NNLKAVALSGNLNQTQRNTIMGQFERAVFKILV 305
Query: 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLV 772
TDVA+RGLD+P V ++ + P + +YVHRVGRT R G++G ++ + P + K V
Sbjct: 306 TTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRV 365
Query: 773 EELQNRRIRIE 783
E + I+ E
Sbjct: 366 EAFLQQEIQFE 376
Score = 95 (38.5 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 40/137 (29%), Positives = 64/137 (46%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA-VQRLAGMTLQNP 253
+E LVLDEADR+LD G+ +++ K ++ Q +++ SATL A V +A L P
Sbjct: 152 LETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQ--TLMFSATLDHADVNDMAMELLNEP 209
Query: 254 IQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKML 313
+I ++ H + QHF + AL IL + E +++
Sbjct: 210 KRIAIGVGSEEHK---------DITQHFYLCDHLDHKEALLDRILA------DAEYRQVI 254
Query: 314 VFMATQDMADYHTELLS 330
+F AT+ D TE L+
Sbjct: 255 IFTATRADTDRLTEKLN 271
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 278 (102.9 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 72/206 (34%), Positives = 116/206 (56%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N + T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 114 NFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 172
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ KS + I + + GG + + +G+ I +ATPGRL+D
Sbjct: 173 VLAPTRELAQQVQQVAFDYGKS-SRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLID 231
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 232 FLEVGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 287
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA LQ+ +QI+ A + + HN
Sbjct: 288 RQLAEDFLQDYVQINIGALELSANHN 313
Score = 254 (94.5 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 62/175 (35%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N + T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 114 NFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 172
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ KS + I + + GG + + +G+ I +ATPGRL+D
Sbjct: 173 VLAPTRELAQQVQQVAFDYGKS-SRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLID 231
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 232 FLEVGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 282
Score = 243 (90.6 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 66/208 (31%), Positives = 113/208 (54%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA LQ+ +QI+ + ++ + L I D +
Sbjct: 265 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIG-ALELSANHNILQIVDVCME 323
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D EL + +
Sbjct: 324 N----EKDNKLIQLMEEIMA-------EKENKTIIFVETKKRCD---ELTRRMRRDGWPA 369
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V FRS K+ +LI TDVA+RGLD+ V +++ Y P+SS DYVHR
Sbjct: 370 MCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 429
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR ++G++ F P ++ +L
Sbjct: 430 IGRTARSTNKGTAYTFFTPGNLRQARDL 457
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 431 (156.8 bits), Expect = 2.9e-38, P = 2.9e-38
Identities = 137/441 (31%), Positives = 215/441 (48%)
Query: 348 YEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLN 407
+ +P+ +S I+ F N DIP V K V E + TS P + + +N+
Sbjct: 107 FGVPEDPNFQSSGIN--FDNYDDIP-VDASG-KDVPEPITEFTS----PPLDGLLLENIK 158
Query: 408 EGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK------- 460
T+ T VQ+ S+ + +G D++ +QTGSGKT + P++ + + P
Sbjct: 159 LA-RFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQG 217
Query: 461 --ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFT---WIVPSWLTGGEKMKSEKARIR 515
RK AVI+ PTRELA Q IF + K FT W+ + GG + ++ I
Sbjct: 218 SFYQRKAYPTAVIMAPTRELATQ---IFDE-AKKFTYRSWVKACVVYGGSPIGNQLREIE 273
Query: 516 KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 575
+G +LVATPGRL D + + + + V++LVLDEADR+LD G+E I +E
Sbjct: 274 RGCDLLVATPGRLNDLLERGK-ISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPV 332
Query: 576 -QFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP 634
+ Q+++ SAT +Q LA L + I + + +T++++ Q +
Sbjct: 333 GERQTLMFSATFPADIQHLARDFLSDYIFLSVGR---VGSTSENIT------QKVLYVEN 383
Query: 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSM 694
+ + AL + + L+F+ T+ MAD T+ L + +N +HG
Sbjct: 384 QDKKSALLDLLSASTDGLT-------LIFVETKRMADQLTDFL---IMQNFRATAIHGDR 433
Query: 695 SQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754
+QSER FRS + +L+ T VAARGLD+P V ++ Y PS DYVHR+GRT R
Sbjct: 434 TQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRA 493
Query: 755 GHEGSSLLFLIPSEVKLVEEL 775
G+ G + F +V+ L
Sbjct: 494 GNTGLATAFFNSENSNIVKGL 514
Score = 235 (87.8 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 68/190 (35%), Positives = 103/190 (54%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---------ISR 54
T+ T VQ+ S+ + +G D++ +QTGSGKT + P++ + + P R
Sbjct: 163 TKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQR 222
Query: 55 KDGIYAVIILPTRELALQTLEIFTKLCKSFT---WIVPSWLTGGEKMKSEKARIRKGISI 111
K AVI+ PTRELA Q IF + K FT W+ + GG + ++ I +G +
Sbjct: 223 KAYPTAVIMAPTRELATQ---IFDE-AKKFTYRSWVKACVVYGGSPIGNQLREIERGCDL 278
Query: 112 LVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQS 170
LVATPGRL D + + + + V++LVLDEADR+LD G+E I +E + Q+
Sbjct: 279 LVATPGRLNDLLERGK-ISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQT 337
Query: 171 ILLSATLTPA 180
++ SAT PA
Sbjct: 338 LMFSATF-PA 346
Score = 37 (18.1 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 759 SSLLFLIPSEV-KLVEELQNRRIRIEEIKLKDCLQNLLSVKMEG 801
S +FL V E + + + +E K L +LLS +G
Sbjct: 357 SDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDG 400
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 434 (157.8 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 138/439 (31%), Positives = 220/439 (50%)
Query: 354 TEVKSGPISSLFQNNPDIP-NVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNI 412
T+V +G I+ F+ DIP V ++PV+E F TS P ++ + +N+
Sbjct: 142 TKVSTG-IN--FEKYDDIPVEVSGGDIEPVNE--F--TS----PPLNSHLLQNIKLS-GY 189
Query: 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---ISRKDGI-Y 468
TQ T VQ+ SI + G D++ +QTGSGKT + PI+ + P + + G+ Y
Sbjct: 190 TQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGY 249
Query: 469 --------AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISI 520
+I+ PTREL Q E K C +W+ P + GG ++++ +I +G +
Sbjct: 250 RPRKAYPTTLILAPTRELVCQIHEESRKFCYR-SWVRPCAVYGGADIRAQIRQIDQGCDL 308
Query: 521 LVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK-PQFQS 579
L ATPGRL+D + + ++ LVLDEADR+LD G+E I +E + Q+
Sbjct: 309 LSATPGRLVDLIDRGR-ISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQT 367
Query: 580 ILLSATLTPAVQRLAGMTLQNPI--QIDAADSTDIHNTTDSLV-IPDSLKQHFIVTPPKL 636
++ SAT +Q LA L++ + + ST N T +V + DS K+
Sbjct: 368 LMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTS-ENITQKVVHVEDSEKR--------- 417
Query: 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696
S++L + E L+F+ T+ MAD T+ L L N +HG +Q
Sbjct: 418 ------SYLLDILHTL--PPEGLTLIFVETKRMADTLTDYL---LNSNFPATSIHGDRTQ 466
Query: 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756
ER + FRS ++ +++ T VA+RGLD+P V ++ Y P+ DYVHR+GRT R G+
Sbjct: 467 RERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGN 526
Query: 757 EGSSLLFLIPSEVKLVEEL 775
G ++ F + + +EL
Sbjct: 527 TGQAVAFFNRNNKGIAKEL 545
Score = 229 (85.7 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 63/186 (33%), Positives = 98/186 (52%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---ISRKDGI-Y 59
TQ T VQ+ SI + G D++ +QTGSGKT + PI+ + P + + G+ Y
Sbjct: 190 TQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGY 249
Query: 60 --------AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISI 111
+I+ PTREL Q E K C +W+ P + GG ++++ +I +G +
Sbjct: 250 RPRKAYPTTLILAPTRELVCQIHEESRKFCYR-SWVRPCAVYGGADIRAQIRQIDQGCDL 308
Query: 112 LVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQK-PQFQS 170
L ATPGRL+D + + ++ LVLDEADR+LD G+E I +E + Q+
Sbjct: 309 LSATPGRLVDLIDRGR-ISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQT 367
Query: 171 ILLSAT 176
++ SAT
Sbjct: 368 LMFSAT 373
>SGD|S000001894 [details] [associations]
symbol:SPB4 "Putative ATP-dependent RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0000027 "ribosomal
large subunit assembly" evidence=IMP] [GO:0030686 "90S preribosome"
evidence=IDA;IPI] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000470 "maturation of LSU-rRNA" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001894
GO:GO:0005524 GO:GO:0005730 EMBL:D50617 EMBL:BK006940 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030686
GO:GO:0006364 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 GeneTree:ENSGT00550000074969
OMA:MDSSANI OrthoDB:EOG46MFT3 EMBL:X16147 PIR:S14942
RefSeq:NP_116654.1 ProteinModelPortal:P25808 SMR:P25808
DIP:DIP-5423N IntAct:P25808 MINT:MINT-525740 STRING:P25808
PaxDb:P25808 EnsemblFungi:YFL002C GeneID:850549 KEGG:sce:YFL002C
CYGD:YFL002c NextBio:966324 Genevestigator:P25808
GermOnline:YFL002C Uniprot:P25808
Length = 606
Score = 418 (152.2 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
Identities = 124/406 (30%), Positives = 207/406 (50%)
Query: 400 PFMKKNLNEGMNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKL--QE 456
P+++ L+ M +T VQ +I P+L G DV+V S TGSGKT A+ IP+++K+ +E
Sbjct: 16 PWIRTGLDV-MGFETMTPVQASTI-PMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEE 73
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF-TWIVP---SWLTGGEK--MKSE 510
+K +++II PTREL+ Q + + + + + P L G + ++ +
Sbjct: 74 ANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDD 133
Query: 511 KAR-IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ +R IL+ TPGR+LD + +K S +V+DEADR+LD + +D + L +
Sbjct: 134 VSNFLRNRPQILIGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRL 192
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHF 629
L KQ+ ++ L SAT+ A + L+NP++I N+ + P SLK ++
Sbjct: 193 LPKQR---RTGLFSATMRSAGSDIFKTGLRNPVRITV-------NSKNQA--PSSLKLNY 240
Query: 630 IVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS-----TVLGEN 684
V P +L L S + N + K +V+ T Y + +L
Sbjct: 241 CVVNPAEKLQLLVSIL-------NNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNE 293
Query: 685 IAFFKLHGSMSQSERTEVFKTFR-SVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTD 743
+ F LHG + S RT+ F S+ + VL TDVAARG+D+P VD ++Q P+++
Sbjct: 294 VEIFSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDM 353
Query: 744 YVHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQNRRIRIEEIKLK 788
++HR GRT R G ++ FL E + +Q + + +EE+ L+
Sbjct: 354 FMHRCGRTGRANRVGKAITFLNEGREEDFIPFMQVKNVELEELDLE 399
Score = 217 (81.4 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 64/190 (33%), Positives = 105/190 (55%)
Query: 1 MNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDG 57
M +T VQ +I P+L G DV+V S TGSGKT A+ IP+++K+ +E +K
Sbjct: 25 MGFETMTPVQASTI-PMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKAH 83
Query: 58 IYAVIILPTRELALQTLEIFTKLCKSF-TWIVP---SWLTGGEK--MKSEKAR-IRKGIS 110
+++II PTREL+ Q + + + + + P L G + ++ + + +R
Sbjct: 84 FHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQ 143
Query: 111 ILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQS 170
IL+ TPGR+LD + +K S +V+DEADR+LD + +D + L +L KQ+ ++
Sbjct: 144 ILIGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQR---RT 199
Query: 171 ILLSATLTPA 180
L SAT+ A
Sbjct: 200 GLFSATMRSA 209
Score = 117 (46.2 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 56/221 (25%), Positives = 100/221 (45%)
Query: 82 KSFTWIVPSWLTGGEKMKSEKARIRKG-ISILVATPGRLLDHCKHTETLKFSKVEHLVLD 140
K+ +++P L K ++ ++ +K L+ P R L + E++ S +EH D
Sbjct: 57 KTAAFVIPV-LEKVVKEEANTSKFKKAHFHSLIIAPTRELS--RQIESVVLSFLEHYPSD 113
Query: 141 EAD---RILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCW-CKHTETLKFSKVE 196
++L E + + + + +PQ IL+ TP +K S
Sbjct: 114 LFPIKCQLLVGTNEATVRDDVSNFLRNRPQ---ILIG---TPGRVLDFLQMPAVKTSACS 167
Query: 197 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+V+DEADR+LD + +D + L +L KQ+ ++ L SAT+ A + L+NP++I
Sbjct: 168 MVVMDEADRLLDMSFIKDTEKILRLLPKQR---RTGLFSATMRSAGSDIFKTGLRNPVRI 224
Query: 257 DAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 297
N+ + P SLK ++ V P +L L S +
Sbjct: 225 TV-------NSKNQA--PSSLKLNYCVVNPAEKLQLLVSIL 256
Score = 56 (24.8 bits), Expect = 3.7e-38, Sum P(2) = 3.7e-38
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 802 DLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFK 861
+L L D V+ T F + +L+ + K Y +++++Y+++S IF +
Sbjct: 392 ELEEL-DLEVKGITTNFYEDFRNWILEDRDRFDKGVKAYVAFIKYYSNHSAT--SIFRLQ 448
Query: 862 QIHLGHFAKSFALRDAP 878
+ AK + L P
Sbjct: 449 SLDYVGIAKLYGLFRLP 465
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 432 (157.1 bits), Expect = 3.7e-38, P = 3.7e-38
Identities = 123/392 (31%), Positives = 195/392 (49%)
Query: 396 PGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQ 455
P + + +N+ + T+ T VQ+ SI + G D++ +QTGSGKT + P+ +L
Sbjct: 159 PPLDELLMENIKLA-SFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELF 217
Query: 456 EMRPK---------ISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEK 506
P SRK A+++ PTRELA Q E K +W+ P + GG
Sbjct: 218 RSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYR-SWVRPCVVYGGAP 276
Query: 507 MKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 566
+ ++ + +G +LVATPGRL D + + + + +++LVLDEADR+LD G+E I
Sbjct: 277 IGNQMREVDRGCDLLVATPGRLNDLLERGK-VSLANIKYLVLDEADRMLDMGFEPQIRHI 335
Query: 567 LEILKKQKPQF-QSILLSATLTPAVQRLAGMTLQNPI--QIDAADSTDIHNTTDSLVIPD 623
+E + Q+++ SAT +Q LA L N I + ST N T ++ D
Sbjct: 336 VEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTS-ENITQRILYVD 394
Query: 624 SLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGE 683
+ + K L+ L S + + L+F+ T+ MAD T+ L + +
Sbjct: 395 DMDK-------KSALLDLLS----------AEHKGLTLIFVETKRMADQLTDFL---IMQ 434
Query: 684 NIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTD 743
N +HG +Q+ER F++ + +L+ T VAARGLD+P V ++ Y PS D
Sbjct: 435 NFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDD 494
Query: 744 YVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
YVHR+GRT R G+ G + F + +V+ L
Sbjct: 495 YVHRIGRTGRAGNTGVATSFFNSNNQNIVKGL 526
Score = 239 (89.2 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 63/185 (34%), Positives = 99/185 (53%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPK---------I 52
+ T+ T VQ+ SI + G D++ +QTGSGKT + P+ +L P
Sbjct: 173 SFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFY 232
Query: 53 SRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISIL 112
SRK A+++ PTRELA Q E K +W+ P + GG + ++ + +G +L
Sbjct: 233 SRKGYPSALVLAPTRELATQIFEEARKFTYR-SWVRPCVVYGGAPIGNQMREVDRGCDLL 291
Query: 113 VATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQF-QSI 171
VATPGRL D + + + + +++LVLDEADR+LD G+E I +E + Q++
Sbjct: 292 VATPGRLNDLLERGK-VSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTL 350
Query: 172 LLSAT 176
+ SAT
Sbjct: 351 MFSAT 355
Score = 39 (18.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 773 EELQNRRIRIEEIKLKDCLQNLLSVKMEG 801
E + R + ++++ K L +LLS + +G
Sbjct: 384 ENITQRILYVDDMDKKSALLDLLSAEHKG 412
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 270 (100.1 bits), Expect = 7.3e-20, P = 7.3e-20
Identities = 68/206 (33%), Positives = 116/206 (56%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + C++ + + + GG + + +G+ +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVENCIATPGRLID 230
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 286
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L++ I I+ A + + HN
Sbjct: 287 RQLAEDFLKDYIHINIGALELSANHN 312
Score = 254 (94.5 bits), Expect = 4.6e-38, Sum P(2) = 4.6e-38
Identities = 59/175 (33%), Positives = 100/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 113 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 171
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + C++ + + + GG + + +G+ +ATPGRL+D
Sbjct: 172 VLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVENCIATPGRLID 230
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 231 FLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 281
Score = 239 (89.2 bits), Expect = 4.6e-38, Sum P(2) = 4.6e-38
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ I I+ + ++ + L I D
Sbjct: 264 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG-ALELSANHNILQIVDVC-- 320
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D EL + +
Sbjct: 321 HDVEKDEKLIRLM----------EEIMSEKENKTIVFVETKRRCD---ELTRKMRRDGWP 367
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDL 456
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 303 (111.7 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 92/293 (31%), Positives = 156/293 (53%)
Query: 389 PTSYEEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYA 447
PT EF G P N + T +Q + G D++ +QTGSGKTLAY
Sbjct: 153 PTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYV 212
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKM 507
+P + + +P++ R DG A+++ PTRELA Q ++ + S T + + + GG
Sbjct: 213 LPAVVHINN-QPRLERGDGPIALVLAPTRELAQQIQQVAIEF-GSNTHVRNTCIFGGAP- 269
Query: 508 KSEKAR-IRKGISILVATPGRLLDHCKH-TETLKFSKVEHLVLDEADRILDQGYERDIAE 565
K ++AR + +G+ I++ATPGRL+D + T +LK + +LVLDEADR+LD G+E I +
Sbjct: 270 KGQQARDLERGVEIVIATPGRLIDFLERGTTSLK--RCTYLVLDEADRMLDMGFEPQIRK 327
Query: 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625
I+++ +P Q ++ SAT V++LA L N IQ++ S + + L I D
Sbjct: 328 ---IMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIG-SLSLSANHNILQIVDVC 383
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLS 678
++ ++L+ L + +++ + E+K ++F+ T+ D T +S
Sbjct: 384 DEN----EKLMKLIKLLT-------DISAENETKTIIFVETKKRVDEITRNIS 425
Score = 263 (97.6 bits), Expect = 4.8e-38, Sum P(2) = 4.8e-38
Identities = 65/164 (39%), Positives = 105/164 (64%)
Query: 16 PI-LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTL 74
PI + G D++ +QTGSGKTLAY +P + + +P++ R DG A+++ PTRELA Q
Sbjct: 189 PIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINN-QPRLERGDGPIALVLAPTRELAQQIQ 247
Query: 75 EIFTKLCKSFTWIVPSWLTGGEKMKSEKAR-IRKGISILVATPGRLLDHCKH-TETLKFS 132
++ + S T + + + GG K ++AR + +G+ I++ATPGRL+D + T +LK
Sbjct: 248 QVAIEF-GSNTHVRNTCIFGGAP-KGQQARDLERGVEIVIATPGRLIDFLERGTTSLK-- 303
Query: 133 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +LVLDEADR+LD G+E I + I+++ +P Q ++ SAT
Sbjct: 304 RCTYLVLDEADRMLDMGFEPQIRK---IMQQIRPDRQVLMWSAT 344
Score = 234 (87.4 bits), Expect = 4.8e-38, Sum P(2) = 4.8e-38
Identities = 69/243 (28%), Positives = 122/243 (50%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+++ +P Q ++ SAT V++LA L N IQ++ S + + L I D +
Sbjct: 327 KIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIG-SLSLSANHNILQIVDVCDE 385
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ ++L+ L + +++ + E+K ++F+ T+ D E+ + +
Sbjct: 386 N----EKLMKLIKLLT-------DISAENETKTIIFVETKKRVD---EITRNISRQGWRA 431
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V +FR+ + +L+ TDVAARGLD+ V +++ Y PS+S DYVHR
Sbjct: 432 CAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHR 491
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL-QNRRIRIEEIKLKDCLQNLLSVKMEGDLSRL 806
+GRT R + G++ S +L Q R + I K L+++ M G ++
Sbjct: 492 IGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPK-----LMNMAMNGGYNKR 546
Query: 807 ADG 809
G
Sbjct: 547 GGG 549
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 291 (107.5 bits), Expect = 5.6e-38, Sum P(3) = 5.6e-38
Identities = 84/236 (35%), Positives = 132/236 (55%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
+ T+ T +Q L G D++ ++TGSGKTLAY +P + + +P++ + DG
Sbjct: 183 LGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSA-QPRLGQDDGPIV 241
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
+I+ PTRELA+Q E K + + + + GG + +R+G+ I++ATPGRL+
Sbjct: 242 LILAPTRELAVQIQEESRKFGLR-SGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 300
Query: 530 D--HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587
D C+HT LK +V +LVLDEADR+LD G+E I + I+ + +P Q++L SAT
Sbjct: 301 DMLECQHTN-LK--RVTYLVLDEADRMLDMGFEPQIRK---IVSQIRPDRQTLLWSATWP 354
Query: 588 PAVQRLAGMTLQNPIQIDAADSTDIH-NTTDSLVIPDSLKQHFIVTPPKL-RLVAL 641
V+ LA L++P + STD+ N + + VI + TP K RL+ L
Sbjct: 355 REVETLARQFLRDPYKA-IIGSTDLKANQSINQVI------EIVPTPEKYNRLLTL 403
Score = 274 (101.5 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 71/192 (36%), Positives = 111/192 (57%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ T+ T +Q L G D++ ++TGSGKTLAY +P + + +P++ + DG
Sbjct: 183 LGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSA-QPRLGQDDGPIV 241
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+Q E K + + + + GG + +R+G+ I++ATPGRL+
Sbjct: 242 LILAPTRELAVQIQEESRKFGLR-SGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 300
Query: 121 D--HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
D C+HT LK +V +LVLDEADR+LD G+E I + I+ + +P Q++L SAT
Sbjct: 301 DMLECQHTN-LK--RVTYLVLDEADRMLDMGFEPQIRK---IVSQIRPDRQTLLWSAT-- 352
Query: 179 PATCWCKHTETL 190
W + ETL
Sbjct: 353 ----WPREVETL 360
Score = 203 (76.5 bits), Expect = 5.6e-38, Sum P(3) = 5.6e-38
Identities = 44/118 (37%), Positives = 64/118 (54%)
Query: 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717
SK+L+F+ T+ D T L + +HG +QSER V F+S +S ++ T
Sbjct: 411 SKILIFVETKRGCDQVTRQLRM---DGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTAT 467
Query: 718 DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
DVAARGLD+ + +V Y P++ DY+HR+GRT R G +G + F K EL
Sbjct: 468 DVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAREL 525
Score = 124 (48.7 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 43/112 (38%), Positives = 63/112 (56%)
Query: 184 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQ 243
C+HT LK +V +LVLDEADR+LD G+E I + I+ + +P Q++L SAT V+
Sbjct: 305 CQHTN-LK--RVTYLVLDEADRMLDMGFEPQIRK---IVSQIRPDRQTLLWSATWPREVE 358
Query: 244 RLAGMTLQNPIQIDAADSTDIH-NTTDSLVIPDSLKQHFIVTPPKL-RLVAL 293
LA L++P + STD+ N + + VI + TP K RL+ L
Sbjct: 359 TLARQFLRDPYKA-IIGSTDLKANQSINQVI------EIVPTPEKYNRLLTL 403
Score = 38 (18.4 bits), Expect = 5.6e-38, Sum P(3) = 5.6e-38
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 309 ESKMLVFMATQDMADYHTE 327
ES + M QD+A Y TE
Sbjct: 132 ESPTVQAMTEQDVAMYRTE 150
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 298 (110.0 bits), Expect = 5.9e-38, Sum P(2) = 5.9e-38
Identities = 76/242 (31%), Positives = 129/242 (53%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N + T +Q +I I+ G D++ ++TGSGKT+A+ +P+ + + + RP + +G AV
Sbjct: 376 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRP-VGEAEGPLAV 434
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
I+ PTRELALQ + K KS V + GG + + A +++G I+V TPGR++D
Sbjct: 435 IMTPTRELALQITKECKKFSKSLALRVVC-VYGGTGISEQIAELKRGAEIIVCTPGRMID 493
Query: 531 H--CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588
+ +V ++V+DEADR+ D G+E + + I+ +P Q+++ SAT
Sbjct: 494 MLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQV---MRIVDNVRPDRQTVMFSATFPR 550
Query: 589 AVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 648
++ LA L P+++ S+V D ++QH IV + + + L ILG
Sbjct: 551 TMEALARRILSKPVEVQVGGR--------SVVCSD-VEQHVIVIEEEKKFLKLLE-ILGH 600
Query: 649 CQ 650
Q
Sbjct: 601 YQ 602
Score = 269 (99.8 bits), Expect = 8.5e-35, Sum P(2) = 8.5e-35
Identities = 62/182 (34%), Positives = 104/182 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N + T +Q +I I+ G D++ ++TGSGKT+A+ +P+ + + + RP + +G AV
Sbjct: 376 NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRP-VGEAEGPLAV 434
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
I+ PTRELALQ + K KS V + GG + + A +++G I+V TPGR++D
Sbjct: 435 IMTPTRELALQITKECKKFSKSLALRVVC-VYGGTGISEQIAELKRGAEIIVCTPGRMID 493
Query: 122 H--CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
+ +V ++V+DEADR+ D G+E + + I+ +P Q+++ SAT P
Sbjct: 494 MLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQV---MRIVDNVRPDRQTVMFSATF-P 549
Query: 180 AT 181
T
Sbjct: 550 RT 551
Score = 200 (75.5 bits), Expect = 5.9e-38, Sum P(2) = 5.9e-38
Identities = 47/151 (31%), Positives = 80/151 (52%)
Query: 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST 679
V+ ++QH IV + + + L ILG Q E+ +++F+ Q+ AD LL
Sbjct: 573 VVCSDVEQHVIVIEEEKKFLKLLE-ILGHYQ-----EKGSVIIFVDKQEHAD---GLLKD 623
Query: 680 VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS 739
++ + LHG + Q +R + F++ +L+ T VAARGLD+ + +V Y+ P+
Sbjct: 624 LMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPN 683
Query: 740 SSTDYVHRVGRTARVGHEGSSLLFLIPSEVK 770
DYVHR GRT R G++G + F+ + +
Sbjct: 684 HYEDYVHRAGRTGRAGNKGYAYTFITEGQAR 714
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 269 (99.8 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 84/242 (34%), Positives = 127/242 (52%)
Query: 394 EFPGIHP-FMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQ 452
E G P +++ L+ G + T +Q S + G D++ ++TGSGKTL Y IP
Sbjct: 161 EATGFPPELLREVLSAGFSAP--TPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 453 KLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKA 512
LQ +R SR G +++ PTRELA Q E K +S + I + L GG +
Sbjct: 219 HLQRIRND-SRM-GPTILVLSPTRELATQIQEEAVKFGRS-SRISCTCLYGGAPKGPQLR 275
Query: 513 RIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKK 572
+ +G I+VATPGRL D + + ++ +LVLDEADR+LD G+E I + I+K+
Sbjct: 276 DLERGADIVVATPGRLNDILE-MRRISLRQISYLVLDEADRMLDMGFEPQIRK---IVKE 331
Query: 573 QKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT 632
+ Q+++ +AT V+++A L NP Q++ I N D LV S+ QH V
Sbjct: 332 IPTKRQTLMYTATWPKGVRKIAADLLVNPAQVN------IGNV-DELVANKSITQHIEVV 384
Query: 633 PP 634
P
Sbjct: 385 AP 386
Score = 222 (83.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 63/170 (37%), Positives = 95/170 (55%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q S + G D++ ++TGSGKTL Y IP LQ +R SR G +++ PT
Sbjct: 182 TPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRND-SRM-GPTILVLSPT 239
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELA Q E K +S + I + L GG + + +G I+VATPGRL D +
Sbjct: 240 RELATQIQEEAVKFGRS-SRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILE-M 297
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ ++ +LVLDEADR+LD G+E I + I+K+ + Q+++ +AT
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRK---IVKEIPTKRQTLMYTAT 344
Score = 221 (82.9 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 56/159 (35%), Positives = 80/159 (50%)
Query: 617 DSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 676
D LV S+ QH V P + L + +++ SK+++F +T+ M D T
Sbjct: 369 DELVANKSITQHIEVVAPMEKQRRLEQILR------SQEPGSKVIIFCSTKRMCDQLTRN 422
Query: 677 LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYT 736
L+ G +HG SQ ER V FRS ++ VL+ TDVAARGLD+ + +V Y
Sbjct: 423 LTRQFGAAA----IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYD 478
Query: 737 APSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
P+ DYVHR+GRT R G G + F + K +L
Sbjct: 479 FPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDL 517
Score = 144 (55.7 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 63/250 (25%), Positives = 116/250 (46%)
Query: 82 KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDE 141
K+ +++P +L ++++++ R G +ILV +P R L E +KF + +
Sbjct: 208 KTLGYLIPGFLHL-QRIRNDS---RMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263
Query: 142 ADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVEHLVL 200
+G + RD+ +I+ + IL + ++ +LVL
Sbjct: 264 LYGGAPKGPQLRDLERGADIVVATPGRLNDIL-------------EMRRISLRQISYLVL 310
Query: 201 DEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAAD 260
DEADR+LD G+E I + I+K+ + Q+++ +AT V+++A L NP Q++
Sbjct: 311 DEADRMLDMGFEPQIRK---IVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVN--- 364
Query: 261 STDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQD 320
I N D LV S+ QH V P + L + +++ SK+++F +T+
Sbjct: 365 ---IGNV-DELVANKSITQHIEVVAPMEKQRRLEQILR------SQEPGSKVIIFCSTKR 414
Query: 321 MADYHTELLS 330
M D T L+
Sbjct: 415 MCDQLTRNLT 424
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 307 (113.1 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 80/252 (31%), Positives = 136/252 (53%)
Query: 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472
T+ T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++
Sbjct: 44 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVL 97
Query: 473 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 532
PTRELA Q E F L S + + + GG S+ + K I++ATPGRL+DH
Sbjct: 98 TPTRELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHL 156
Query: 533 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQR 592
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 157 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQK 213
Query: 593 LAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 650
L L+NP++ + L IP K ++V L +A SF++ C
Sbjct: 214 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CS 270
Query: 651 NVNEDEESKMLV 662
N + + +L+
Sbjct: 271 TCNNTQRTALLL 282
Score = 264 (98.0 bits), Expect = 8.4e-38, Sum P(2) = 8.4e-38
Identities = 62/175 (35%), Positives = 104/175 (59%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
T+ T +Q +I L G D++ ++TGSGKT A+A+PI+ L E ++ +A+++
Sbjct: 44 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVL 97
Query: 64 LPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHC 123
PTRELA Q E F L S + + + GG S+ + K I++ATPGRL+DH
Sbjct: 98 TPTRELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHL 156
Query: 124 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T
Sbjct: 157 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMT 208
Score = 218 (81.8 bits), Expect = 8.4e-38, Sum P(2) = 8.4e-38
Identities = 66/194 (34%), Positives = 96/194 (49%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ L+Q+++ P K + L +IL NE + ++F +T + T LL LG
Sbjct: 235 EKLQQYYLFIPSKFKDTYLV-YIL------NELAGNSFMIFCSTCNNTQ-RTALLLRNLG 286
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
LHG MSQS+R F++ +L+ TDVA+RGLD+P VD +V + P+ S
Sbjct: 287 --FTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSK 344
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPS-----EVKLVEELQNRRIRIE---EIKLKDCLQNL 794
DY+HRVGRTAR G S PS V+ E L N +I I + +L CL +
Sbjct: 345 DYIHRVGRTARAGRCWSQRAVTFPSIYQASTVQRREPLVNNKINIFVYWDFRLI-CLHEV 403
Query: 795 LSVKMEGDLSRLAD 808
L + D L +
Sbjct: 404 LGSYLAFDFKELRE 417
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 36/132 (27%), Positives = 68/132 (51%)
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
++T+ +++LV+DEADRIL+ +E ++ + L+++ + + F L SAT+T VQ+
Sbjct: 157 ENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF---LFSATMTKKVQK 213
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 302
L L+NP++ + L IP K ++V L +A SF++ C
Sbjct: 214 LQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI--LNELAGNSFMIF-CS 270
Query: 303 NVNEDEESKMLV 314
N + + +L+
Sbjct: 271 TCNNTQRTALLL 282
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 271 (100.5 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 74/204 (36%), Positives = 113/204 (55%)
Query: 414 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 473
Q T +Q+ I +++G D+L +QTG+GKT A+++PII K + I K ++I+
Sbjct: 24 QPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKS-TRSLILT 82
Query: 474 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 533
PTRELA Q ++ + + GG +++ I G+ ILVATPGRLLD +
Sbjct: 83 PTRELASQIMQNIDDYSDGLG-LKTKVVYGGVGRQAQVDSIELGLDILVATPGRLLDLIE 141
Query: 534 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRL 593
T + F +E VLDEAD +LD G+ +D+ + L K + Q++L SAT+ ++ L
Sbjct: 142 -TGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSR---QTLLFSATMPAEIEIL 197
Query: 594 AGMTLQNP--IQIDAADST-DIHN 614
A L +P IQI A T D+ N
Sbjct: 198 AEAILTDPTKIQITAETVTIDLVN 221
Score = 251 (93.4 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 65/176 (36%), Positives = 100/176 (56%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL 64
Q T +Q+ I +++G D+L +QTG+GKT A+++PII K + I K ++I+
Sbjct: 24 QPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKS-TRSLILT 82
Query: 65 PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
PTRELA Q ++ + + GG +++ I G+ ILVATPGRLLD +
Sbjct: 83 PTRELASQIMQNIDDYSDGLG-LKTKVVYGGVGRQAQVDSIELGLDILVATPGRLLDLIE 141
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
T + F +E VLDEAD +LD G+ +D+ + L K + Q++L SAT+ PA
Sbjct: 142 -TGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSR---QTLLFSATM-PA 192
Score = 200 (75.5 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 53/170 (31%), Positives = 86/170 (50%)
Query: 608 DSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQ 667
D T I T +++ I D + Q + K V L IL K D E K+L+F T+
Sbjct: 204 DPTKIQITAETVTI-DLVNQS-VYHLDKSNKVPLLFNILTKA-----DYE-KVLIFCKTK 255
Query: 668 DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP 727
AD + L +I LH +Q+ R E + F+ VL+ TDVAARG+D+
Sbjct: 256 YGADIIVKALEKA---SITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDVD 312
Query: 728 LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
+ ++ Y P +Y+HR+GRTAR G G ++ F + ++++ + ++N
Sbjct: 313 NITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIEN 362
Score = 111 (44.1 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 187 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA 246
T + F +E VLDEAD +LD G+ +D+ + L K + Q++L SAT+ ++ LA
Sbjct: 142 TGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSR---QTLLFSATMPAEIEILA 198
Query: 247 GMTLQNP--IQIDAADST-DIHN 266
L +P IQI A T D+ N
Sbjct: 199 EAILTDPTKIQITAETVTIDLVN 221
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 397 (144.8 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 90/272 (33%), Positives = 161/272 (59%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
M T++T +Q S+ P+L G D++ +QTGSGKTLA+ IP ++ + ++R ++G
Sbjct: 205 MGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLR--FMPRNGTGV 262
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
+II PTREL++QT + +L + GG + E ++ KGI+ILVATPGRLL
Sbjct: 263 IIISPTRELSMQTFGVLKELMAHHHHTY-GLVMGGSNRQVESEKLGKGINILVATPGRLL 321
Query: 530 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 589
DH +++ + ++ L++DE DRIL+ G+E ++ + + +L K++ Q++L SAT T
Sbjct: 322 DHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRR---QTMLFSATQTAR 378
Query: 590 VQRLAGMTLQN-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGK 648
++ L+ + L++ PI + +H+ D+ + D L+Q +IV P + RL+ L +F+
Sbjct: 379 IEALSKLALKSEPIYVG------VHDNQDTATV-DGLEQGYIVCPSEKRLLVLFTFL--- 428
Query: 649 CQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
++ + K++VF ++ YH EL + +
Sbjct: 429 ----KKNRKKKVMVFFSSCMSVKYHHELFNYI 456
Score = 331 (121.6 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 84/263 (31%), Positives = 145/263 (55%)
Query: 565 EFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 624
E +I+ + Q++L SAT T ++ L+ + L++ I +H+ D+ + D
Sbjct: 354 ELKQIINLLPKRRQTMLFSATQTARIEALSKLALKSE-PIYVG----VHDNQDTATV-DG 407
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q +IV P + RL+ L +F+ ++ + K++VF ++ YH EL + + +
Sbjct: 408 LEQGYIVCPSEKRLLVLFTFL-------KKNRKKKVMVFFSSCMSVKYHHELFNYI---D 457
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+ +HG Q++RT F F + +SG+L+CTDVAARGLD+P VDWIVQY P +Y
Sbjct: 458 LPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREY 517
Query: 745 VHRVGRTAR-VGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDL 803
+HRVGRTAR G G +LL + P E+ + L+ ++ + E + Q + ++++ L
Sbjct: 518 IHRVGRTARGSGTSGHALLLMRPEELGFLRYLKAAKVPLNEFEFS--WQKIADIQLQ--L 573
Query: 804 SRLADGNVETAATALQMSFESAV 826
+L N +A + +F+S V
Sbjct: 574 EKLIAKNYFLNQSAKE-AFKSYV 595
Score = 330 (121.2 bits), Expect = 5.6e-30, Sum P(2) = 5.6e-30
Identities = 83/248 (33%), Positives = 137/248 (55%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M T++T +Q S+ P+L G D++ +QTGSGKTLA+ IP ++ + ++R ++G
Sbjct: 205 MGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLR--FMPRNGTGV 262
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+II PTREL++QT + +L + GG + E ++ KGI+ILVATPGRLL
Sbjct: 263 IIISPTRELSMQTFGVLKELMAHHHHTY-GLVMGGSNRQVESEKLGKGINILVATPGRLL 321
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
DH +++ + ++ L++DE DRIL+ G+E ++ + + +L K++ Q++L SAT T A
Sbjct: 322 DHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRR---QTMLFSATQT-A 377
Query: 181 TCWCKHTETLKFSKVEHLVLDEADRI----LDQGY-----ERDIAEFLEILKKQKPQFQS 231
LK + V D D L+QGY E+ + LKK + +
Sbjct: 378 RIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 437
Query: 232 VLLSATLT 239
V S+ ++
Sbjct: 438 VFFSSCMS 445
Score = 164 (62.8 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 40/140 (28%), Positives = 81/140 (57%)
Query: 192 FSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQ 251
+ ++ L++DE DRIL+ G+E ++ + + +L K++ Q++L SAT T ++ L+ + L+
Sbjct: 332 YKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRR---QTMLFSATQTARIEALSKLALK 388
Query: 252 N-PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEES 310
+ PI + +H+ D+ + D L+Q +IV P + RL+ L +F+ ++ +
Sbjct: 389 SEPIYVG------VHDNQDTATV-DGLEQGYIVCPSEKRLLVLFTFL-------KKNRKK 434
Query: 311 KMLVFMATQDMADYHTELLS 330
K++VF ++ YH EL +
Sbjct: 435 KVMVFFSSCMSVKYHHELFN 454
Score = 83 (34.3 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 818 LQMSFESAVLQQKILHTSACKGYTSWVRFYASYSKDLRHIFNFKQIHLGHFAKSFALRDA 877
+Q+ E + + L+ SA + + S+VR Y S+ L+ IFN + L AKSF
Sbjct: 569 IQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQ--LKQIFNVNTLDLQAVAKSFGFLVP 626
Query: 878 PSVISGIG 885
P V +G
Sbjct: 627 PVVDLKVG 634
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 285 (105.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 73/224 (32%), Positives = 125/224 (55%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ E G+ + +++ E M + T +Q +I L G D++ ++QTG+GKT A+ +P
Sbjct: 2 TTFREL-GLSDSLLQSV-ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMK 508
++ K+ + K+ + ++I PTRELA+Q E K+ K I+P + GG+ +
Sbjct: 60 LLDKVD------THKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDIN 111
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ ++K I+V TPGR+LDH +TL+ VE +VLDEAD +L+ G+ DI
Sbjct: 112 RQIRALKKHPHIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA--- 167
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST 610
IL Q++L SAT+ ++R+A + P I++ A + T
Sbjct: 168 ILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211
Score = 258 (95.9 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 63/178 (35%), Positives = 101/178 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +Q +I L G D++ ++QTG+GKT A+ +P++ K+ + K+ +
Sbjct: 20 MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD------THKESVQG 73
Query: 61 VIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++I PTRELA+Q E K+ K I+P + GG+ + + ++K I+V TPGR+
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LDH +TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+
Sbjct: 132 LDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATM 185
Score = 197 (74.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
+VF T+ D +E L+ A +HG ++Q++R V + F+ VL+ TDVA
Sbjct: 244 IVFGRTKRRVDELSEALNL---RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQN 777
ARGLD+ V + + P YVHR+GRT R G +G ++LF+ P E +K +E
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Query: 778 RRI-RIEEIKLKDCL---QNLLSVKMEGDL 803
R++ R++ L + L Q L++ K++ +
Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQNTI 390
Score = 101 (40.6 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
+TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+ ++R+A
Sbjct: 138 KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATMPDPIRRIAE 194
Query: 248 MTLQNP--IQIDAADST 262
+ P I++ A + T
Sbjct: 195 RFMTEPQHIKVKAKEVT 211
Score = 56 (24.8 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 515 RKGISILVATPGRL--LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+KGI++L TP L + + T K +++ LDEA L+ G +R IAE L+
Sbjct: 336 KKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEA---LE-GQQRLIAEKLQ 387
Score = 37 (18.1 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 675 ELLSTVLGENIAFFK 689
+L +T+ EN+A++K
Sbjct: 385 KLQNTIENENLAYYK 399
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 285 (105.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 73/224 (32%), Positives = 125/224 (55%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ E G+ + +++ E M + T +Q +I L G D++ ++QTG+GKT A+ +P
Sbjct: 2 TTFREL-GLSDSLLQSV-ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMK 508
++ K+ + K+ + ++I PTRELA+Q E K+ K I+P + GG+ +
Sbjct: 60 LLDKVD------THKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDIN 111
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ ++K I+V TPGR+LDH +TL+ VE +VLDEAD +L+ G+ DI
Sbjct: 112 RQIRALKKHPHIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA--- 167
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST 610
IL Q++L SAT+ ++R+A + P I++ A + T
Sbjct: 168 ILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211
Score = 258 (95.9 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 63/178 (35%), Positives = 101/178 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +Q +I L G D++ ++QTG+GKT A+ +P++ K+ + K+ +
Sbjct: 20 MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD------THKESVQG 73
Query: 61 VIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++I PTRELA+Q E K+ K I+P + GG+ + + ++K I+V TPGR+
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LDH +TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+
Sbjct: 132 LDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATM 185
Score = 197 (74.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
+VF T+ D +E L+ A +HG ++Q++R V + F+ VL+ TDVA
Sbjct: 244 IVFGRTKRRVDELSEALNL---RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQN 777
ARGLD+ V + + P YVHR+GRT R G +G ++LF+ P E +K +E
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Query: 778 RRI-RIEEIKLKDCL---QNLLSVKMEGDL 803
R++ R++ L + L Q L++ K++ +
Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQSTI 390
Score = 101 (40.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
+TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+ ++R+A
Sbjct: 138 KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATMPDPIRRIAE 194
Query: 248 MTLQNP--IQIDAADST 262
+ P I++ A + T
Sbjct: 195 RFMTEPQHIKVKAKEVT 211
Score = 56 (24.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 515 RKGISILVATPGRL--LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+KGI++L TP L + + T K +++ LDEA L+ G +R IAE L+
Sbjct: 336 KKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEA---LE-GQQRLIAEKLQ 387
Score = 40 (19.1 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 675 ELLSTVLGENIAFFK 689
+L ST+ EN+A++K
Sbjct: 385 KLQSTIENENLAYYK 399
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 285 (105.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 73/224 (32%), Positives = 125/224 (55%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ E G+ + +++ E M + T +Q +I L G D++ ++QTG+GKT A+ +P
Sbjct: 2 TTFREL-GLSDSLLQSV-ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMK 508
++ K+ + K+ + ++I PTRELA+Q E K+ K I+P + GG+ +
Sbjct: 60 LLDKVD------THKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDIN 111
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ ++K I+V TPGR+LDH +TL+ VE +VLDEAD +L+ G+ DI
Sbjct: 112 RQIRALKKHPHIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA--- 167
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST 610
IL Q++L SAT+ ++R+A + P I++ A + T
Sbjct: 168 ILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211
Score = 258 (95.9 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 63/178 (35%), Positives = 101/178 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +Q +I L G D++ ++QTG+GKT A+ +P++ K+ + K+ +
Sbjct: 20 MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD------THKESVQG 73
Query: 61 VIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++I PTRELA+Q E K+ K I+P + GG+ + + ++K I+V TPGR+
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LDH +TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+
Sbjct: 132 LDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATM 185
Score = 197 (74.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
+VF T+ D +E L+ A +HG ++Q++R V + F+ VL+ TDVA
Sbjct: 244 IVFGRTKRRVDELSEALNL---RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQN 777
ARGLD+ V + + P YVHR+GRT R G +G ++LF+ P E +K +E
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Query: 778 RRI-RIEEIKLKDCL---QNLLSVKMEGDL 803
R++ R++ L + L Q L++ K++ +
Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQSTI 390
Score = 101 (40.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
+TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+ ++R+A
Sbjct: 138 KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATMPDPIRRIAE 194
Query: 248 MTLQNP--IQIDAADST 262
+ P I++ A + T
Sbjct: 195 RFMTEPQHIKVKAKEVT 211
Score = 56 (24.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 515 RKGISILVATPGRL--LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+KGI++L TP L + + T K +++ LDEA L+ G +R IAE L+
Sbjct: 336 KKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEA---LE-GQQRLIAEKLQ 387
Score = 40 (19.1 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 675 ELLSTVLGENIAFFK 689
+L ST+ EN+A++K
Sbjct: 385 KLQSTIENENLAYYK 399
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 285 (105.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 73/224 (32%), Positives = 125/224 (55%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ E G+ + +++ E M + T +Q +I L G D++ ++QTG+GKT A+ +P
Sbjct: 2 TTFREL-GLSDSLLQSV-ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMK 508
++ K+ + K+ + ++I PTRELA+Q E K+ K I+P + GG+ +
Sbjct: 60 LLDKVD------THKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDIN 111
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ ++K I+V TPGR+LDH +TL+ VE +VLDEAD +L+ G+ DI
Sbjct: 112 RQIRALKKHPHIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA--- 167
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST 610
IL Q++L SAT+ ++R+A + P I++ A + T
Sbjct: 168 ILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211
Score = 258 (95.9 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 63/178 (35%), Positives = 101/178 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +Q +I L G D++ ++QTG+GKT A+ +P++ K+ + K+ +
Sbjct: 20 MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD------THKESVQG 73
Query: 61 VIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++I PTRELA+Q E K+ K I+P + GG+ + + ++K I+V TPGR+
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LDH +TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+
Sbjct: 132 LDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATM 185
Score = 197 (74.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
+VF T+ D +E L+ A +HG ++Q++R V + F+ VL+ TDVA
Sbjct: 244 IVFGRTKRRVDELSEALNL---RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQN 777
ARGLD+ V + + P YVHR+GRT R G +G ++LF+ P E +K +E
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Query: 778 RRI-RIEEIKLKDCL---QNLLSVKMEGDL 803
R++ R++ L + L Q L++ K++ +
Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQSTI 390
Score = 101 (40.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
+TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+ ++R+A
Sbjct: 138 KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATMPDPIRRIAE 194
Query: 248 MTLQNP--IQIDAADST 262
+ P I++ A + T
Sbjct: 195 RFMTEPQHIKVKAKEVT 211
Score = 56 (24.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 515 RKGISILVATPGRL--LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+KGI++L TP L + + T K +++ LDEA L+ G +R IAE L+
Sbjct: 336 KKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEA---LE-GQQRLIAEKLQ 387
Score = 40 (19.1 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 675 ELLSTVLGENIAFFK 689
+L ST+ EN+A++K
Sbjct: 385 KLQSTIENENLAYYK 399
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 285 (105.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 73/224 (32%), Positives = 125/224 (55%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ E G+ + +++ E M + T +Q +I L G D++ ++QTG+GKT A+ +P
Sbjct: 2 TTFREL-GLSDSLLQSV-ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMK 508
++ K+ + K+ + ++I PTRELA+Q E K+ K I+P + GG+ +
Sbjct: 60 LLDKVD------THKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDIN 111
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ ++K I+V TPGR+LDH +TL+ VE +VLDEAD +L+ G+ DI
Sbjct: 112 RQIRALKKHPHIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA--- 167
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST 610
IL Q++L SAT+ ++R+A + P I++ A + T
Sbjct: 168 ILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211
Score = 258 (95.9 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 63/178 (35%), Positives = 101/178 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +Q +I L G D++ ++QTG+GKT A+ +P++ K+ + K+ +
Sbjct: 20 MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD------THKESVQG 73
Query: 61 VIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++I PTRELA+Q E K+ K I+P + GG+ + + ++K I+V TPGR+
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LDH +TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+
Sbjct: 132 LDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATM 185
Score = 197 (74.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
+VF T+ D +E L+ A +HG ++Q++R V + F+ VL+ TDVA
Sbjct: 244 IVFGRTKRRVDELSEALNL---RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQN 777
ARGLD+ V + + P YVHR+GRT R G +G ++LF+ P E +K +E
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Query: 778 RRI-RIEEIKLKDCL---QNLLSVKMEGDL 803
R++ R++ L + L Q L++ K++ +
Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQSTI 390
Score = 101 (40.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
+TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+ ++R+A
Sbjct: 138 KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATMPDPIRRIAE 194
Query: 248 MTLQNP--IQIDAADST 262
+ P I++ A + T
Sbjct: 195 RFMTEPQHIKVKAKEVT 211
Score = 56 (24.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 515 RKGISILVATPGRL--LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+KGI++L TP L + + T K +++ LDEA L+ G +R IAE L+
Sbjct: 336 KKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEA---LE-GQQRLIAEKLQ 387
Score = 40 (19.1 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 675 ELLSTVLGENIAFFK 689
+L ST+ EN+A++K
Sbjct: 385 KLQSTIENENLAYYK 399
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 285 (105.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 73/224 (32%), Positives = 125/224 (55%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ E G+ + +++ E M + T +Q +I L G D++ ++QTG+GKT A+ +P
Sbjct: 2 TTFREL-GLSDSLLQSV-ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMK 508
++ K+ + K+ + ++I PTRELA+Q E K+ K I+P + GG+ +
Sbjct: 60 LLDKVD------THKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDIN 111
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ ++K I+V TPGR+LDH +TL+ VE +VLDEAD +L+ G+ DI
Sbjct: 112 RQIRALKKHPHIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA--- 167
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST 610
IL Q++L SAT+ ++R+A + P I++ A + T
Sbjct: 168 ILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211
Score = 258 (95.9 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 63/178 (35%), Positives = 101/178 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +Q +I L G D++ ++QTG+GKT A+ +P++ K+ + K+ +
Sbjct: 20 MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD------THKESVQG 73
Query: 61 VIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++I PTRELA+Q E K+ K I+P + GG+ + + ++K I+V TPGR+
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LDH +TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+
Sbjct: 132 LDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATM 185
Score = 197 (74.4 bits), Expect = 1.6e-37, Sum P(2) = 1.6e-37
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
+VF T+ D +E L+ A +HG ++Q++R V + F+ VL+ TDVA
Sbjct: 244 IVFGRTKRRVDELSEALNL---RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQN 777
ARGLD+ V + + P YVHR+GRT R G +G ++LF+ P E +K +E
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Query: 778 RRI-RIEEIKLKDCL---QNLLSVKMEGDL 803
R++ R++ L + L Q L++ K++ +
Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQSTI 390
Score = 101 (40.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
+TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+ ++R+A
Sbjct: 138 KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATMPDPIRRIAE 194
Query: 248 MTLQNP--IQIDAADST 262
+ P I++ A + T
Sbjct: 195 RFMTEPQHIKVKAKEVT 211
Score = 56 (24.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 515 RKGISILVATPGRL--LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+KGI++L TP L + + T K +++ LDEA L+ G +R IAE L+
Sbjct: 336 KKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEA---LE-GQQRLIAEKLQ 387
Score = 40 (19.1 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 675 ELLSTVLGENIAFFK 689
+L ST+ EN+A++K
Sbjct: 385 KLQSTIENENLAYYK 399
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 285 (105.4 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
Identities = 73/224 (32%), Positives = 125/224 (55%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ E G+ + +++ E M + T +Q +I L G D++ ++QTG+GKT A+ +P
Sbjct: 2 TTFREL-GLSDSLLQSV-ESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP 59
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMK 508
++ K+ + K+ + ++I PTRELA+Q E K+ K I+P + GG+ +
Sbjct: 60 LLDKVD------THKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDIN 111
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ ++K I+V TPGR+LDH +TL+ VE +VLDEAD +L+ G+ DI
Sbjct: 112 RQIRALKKHPHIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA--- 167
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST 610
IL Q++L SAT+ ++R+A + P I++ A + T
Sbjct: 168 ILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVT 211
Score = 258 (95.9 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 63/178 (35%), Positives = 101/178 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +Q +I L G D++ ++QTG+GKT A+ +P++ K+ + K+ +
Sbjct: 20 MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVD------THKESVQG 73
Query: 61 VIILPTRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++I PTRELA+Q E K+ K I+P + GG+ + + ++K I+V TPGR+
Sbjct: 74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIY--GGQDINRQIRALKKHPHIIVGTPGRI 131
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LDH +TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+
Sbjct: 132 LDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATM 185
Score = 197 (74.4 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
+VF T+ D +E L+ A +HG ++Q++R V + F+ VL+ TDVA
Sbjct: 244 IVFGRTKRRVDELSEALNL---RGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVA 300
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQN 777
ARGLD+ V + + P YVHR+GRT R G +G ++LF+ P E +K +E
Sbjct: 301 ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTK 360
Query: 778 RRI-RIEEIKLKDCL---QNLLSVKMEGDL 803
R++ R++ L + L Q L++ K++ +
Sbjct: 361 RKMDRMDAPTLDEALEGQQRLIAEKLQSTI 390
Score = 101 (40.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAG 247
+TL+ VE +VLDEAD +L+ G+ DI IL Q++L SAT+ ++R+A
Sbjct: 138 KTLRLQNVETVVLDEADEMLNMGFIEDIEA---ILTDVPETHQTLLFSATMPDPIRRIAE 194
Query: 248 MTLQNP--IQIDAADST 262
+ P I++ A + T
Sbjct: 195 RFMTEPQHIKVKAKEVT 211
Score = 56 (24.8 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 515 RKGISILVATPGRL--LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+KGI++L TP L + + T K +++ LDEA L+ G +R IAE L+
Sbjct: 336 KKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEA---LE-GQQRLIAEKLQ 387
Score = 40 (19.1 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 675 ELLSTVLGENIAFFK 689
+L ST+ EN+A++K
Sbjct: 385 KLQSTIENENLAYYK 399
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 291 (107.5 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 79/247 (31%), Positives = 141/247 (57%)
Query: 418 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 477
+Q+ +I L G DV+ ++TGSGKT A+A+PI+ L E P+ +A+++ PTRE
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLE-NPQ-----RYFALVLTPTRE 140
Query: 478 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 537
LA Q E F L S I + GG M ++ ++ K I++ATPGRL+DH ++ +
Sbjct: 141 LAFQIGEQFEAL-GSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKG 199
Query: 538 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMT 597
+++LV+DEADRIL+ +E ++ + L++L +++ F L SAT+T V++L +
Sbjct: 200 FNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTF---LFSATMTKKVKKLQRAS 256
Query: 598 LQNPIQIDAADSTD-IHNTTDS-LVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNED 655
L++P++++ ++ + S L IP K ++V L +A SF++ C N
Sbjct: 257 LKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHI--LNELAGNSFMIF-CSTCNNT 313
Query: 656 EESKMLV 662
++ +++
Sbjct: 314 VKTALML 320
Score = 253 (94.1 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 63/170 (37%), Positives = 103/170 (60%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68
+Q+ +I L G DV+ ++TGSGKT A+A+PI+ L E P+ +A+++ PTRE
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLE-NPQ-----RYFALVLTPTRE 140
Query: 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 128
LA Q E F L S I + GG M ++ ++ K I++ATPGRL+DH ++ +
Sbjct: 141 LAFQIGEQFEAL-GSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKG 199
Query: 129 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
+++LV+DEADRIL+ +E ++ + L++L +++ F L SAT+T
Sbjct: 200 FNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTF---LFSATMT 246
Score = 230 (86.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 52/155 (33%), Positives = 86/155 (55%)
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ L+Q ++ P K + V L + NE + ++F +T + T L+ LG
Sbjct: 273 EQLQQSYLFIPVKYKDVYLVHIL-------NELAGNSFMIFCSTCNNT-VKTALMLRALG 324
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
+A LHG MSQ++R F++ +LI TDVA+RGLD+P VD +V + P+ S
Sbjct: 325 --LAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSK 382
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
DY+HRVGRTAR G G ++ + +++L + +++
Sbjct: 383 DYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEH 417
Score = 133 (51.9 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 46/166 (27%), Positives = 92/166 (55%)
Query: 154 IAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLK-FS--KVEHLVLDEADRILDQG 210
+A+ L++ KK P I+++ TP H E +K F+ +++LV+DEADRIL+
Sbjct: 170 VAQGLQLAKK--PH---IIIA---TPGRL-VDHLENMKGFNLKAIKYLVMDEADRILNMD 220
Query: 211 YERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTD-IHNTTD 269
+E ++ + L++L +++ F L SAT+T V++L +L++P++++ ++ +
Sbjct: 221 FEVELDKILKVLPRERRTF---LFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQ 277
Query: 270 S-LVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLV 314
S L IP K ++V L +A SF++ C N ++ +++
Sbjct: 278 SYLFIPVKYKDVYLVHI--LNELAGNSFMIF-CSTCNNTVKTALML 320
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 269 (99.8 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 72/224 (32%), Positives = 122/224 (54%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 169
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 170 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 229 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 284
Query: 591 QRLAGMTLQNPIQIDAA--DSTDIHNTTDSL-VIPDSLKQHFIV 631
++LA L++ QI+ + + HN + V +S K H ++
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLI 328
Score = 249 (92.7 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 60/175 (34%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 169
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 170 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 229 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 279
Score = 239 (89.2 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 66/208 (31%), Positives = 112/208 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ QI+ + ++ + L I D +
Sbjct: 262 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGN-LELSANHNILQIVDVCME 320
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D +L + +
Sbjct: 321 ----SEKDHKLIQLMEEIMA-------EKENKTIIFVETKRRCD---DLTRRMRRDGWPA 366
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V FRS K+ +LI TDVA+RGLD+ V +++ Y P+SS DYVHR
Sbjct: 367 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 426
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR ++G++ F P +K EL
Sbjct: 427 IGRTARSTNKGTAYTFFTPGNLKQAREL 454
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 269 (99.8 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 72/224 (32%), Positives = 122/224 (54%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 169
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 170 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 229 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 284
Query: 591 QRLAGMTLQNPIQIDAA--DSTDIHNTTDSL-VIPDSLKQHFIV 631
++LA L++ QI+ + + HN + V +S K H ++
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLI 328
Score = 249 (92.7 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 60/175 (34%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 169
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 170 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 229 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 279
Score = 239 (89.2 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 66/208 (31%), Positives = 112/208 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ QI+ + ++ + L I D +
Sbjct: 262 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGN-LELSANHNILQIVDVCME 320
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D +L + +
Sbjct: 321 ----SEKDHKLIQLMEEIMA-------EKENKTIIFVETKRRCD---DLTRRMRRDGWPA 366
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V FRS K+ +LI TDVA+RGLD+ V +++ Y P+SS DYVHR
Sbjct: 367 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 426
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR ++G++ F P +K EL
Sbjct: 427 IGRTARSTNKGTAYTFFTPGNLKQAREL 454
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 269 (99.8 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 72/224 (32%), Positives = 122/224 (54%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 169
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 170 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 229 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 284
Query: 591 QRLAGMTLQNPIQIDAA--DSTDIHNTTDSL-VIPDSLKQHFIV 631
++LA L++ QI+ + + HN + V +S K H ++
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLI 328
Score = 249 (92.7 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 60/175 (34%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 169
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 170 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 228
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 229 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 279
Score = 239 (89.2 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 66/208 (31%), Positives = 112/208 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ QI+ + ++ + L I D +
Sbjct: 262 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGN-LELSANHNILQIVDVCME 320
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D +L + +
Sbjct: 321 ----SEKDHKLIQLMEEIMA-------EKENKTIIFVETKRRCD---DLTRRMRRDGWPA 366
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V FRS K+ +LI TDVA+RGLD+ V +++ Y P+SS DYVHR
Sbjct: 367 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 426
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR ++G++ F P +K EL
Sbjct: 427 IGRTARSTNKGTAYTFFTPGNLKQAREL 454
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 265 (98.3 bits), Expect = 2.4e-19, P = 2.4e-19
Identities = 67/206 (32%), Positives = 115/206 (55%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 101 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 159
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + ++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 160 VLAPTRELAQQVQQVAAEYSRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 218
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 219 FLEAGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 274
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L+ + I+ A + + HN
Sbjct: 275 RQLAEDFLKEYVHINIGALELSANHN 300
Score = 251 (93.4 bits), Expect = 2.9e-37, Sum P(2) = 2.9e-37
Identities = 59/175 (33%), Positives = 100/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 101 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 159
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + ++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 160 VLAPTRELAQQVQQVAAEYSRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 218
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 219 FLEAGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 269
Score = 234 (87.4 bits), Expect = 2.9e-37, Sum P(2) = 2.9e-37
Identities = 65/209 (31%), Positives = 111/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L+ + I+ + ++ + L I D
Sbjct: 252 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIG-ALELSANHNILQIVDVC-- 308
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D +L + +
Sbjct: 309 HDVEKDDKLIRLM----------EEIMSEKENKTIVFVETKRRCD---DLTRKMRRDGWP 355
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 356 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 415
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 416 RIGRTARSTKTGTAYTFFTPNNIKQVNDL 444
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 278 (102.9 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 77/241 (31%), Positives = 130/241 (53%)
Query: 392 YEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPII 451
+E+ G +P + K++ + + T +Q + +L G D++ +QTG+GKTL+Y +P
Sbjct: 216 FEDAFGPYPELMKSIKKA-GFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGF 274
Query: 452 QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
L +++G +++ PTRELALQ +K S+ + + GG K +
Sbjct: 275 IHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKY--SYKGLKSVCIYGGGNRKGQI 332
Query: 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571
I KG+ I++ATPGRL D + + + +LVLDEAD++LD G+E I ++IL
Sbjct: 333 QDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQI---MKILL 388
Query: 572 KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 631
+P Q+I+ SAT +++LA L+ P+ + T D LV D++KQ+ I+
Sbjct: 389 DVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVG-------TLD-LVAVDTVKQNIII 440
Query: 632 T 632
T
Sbjct: 441 T 441
Score = 235 (87.8 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 60/170 (35%), Positives = 95/170 (55%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q + +L G D++ +QTG+GKTL+Y +P L +++G +++ PT
Sbjct: 239 TPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPT 298
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ +K S+ + + GG K + I KG+ I++ATPGRL D +
Sbjct: 299 RELALQVGAECSKY--SYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLND-LQMN 355
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ + +LVLDEAD++LD G+E I ++IL +P Q+I+ SAT
Sbjct: 356 NFVNLRSITYLVLDEADKMLDLGFEHQI---MKILLDVRPDRQTIMTSAT 402
Score = 206 (77.6 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 53/160 (33%), Positives = 87/160 (54%)
Query: 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675
T LV D++KQ+ I+T + + F+ Q+++ + K++VF++ + +AD +
Sbjct: 425 TLDLVAVDTVKQNIIITTEEEKRSLFQEFL----QSLSPKD--KVIVFVSRKLIAD---D 475
Query: 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY 735
L S + + I LHG QS+R F++ K +LI TD+A+RGLD+ V + Y
Sbjct: 476 LSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNY 535
Query: 736 TAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
P + +YVHRVGRT R G G S+ + + K+ EL
Sbjct: 536 NFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGEL 575
Score = 119 (46.9 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 32/90 (35%), Positives = 53/90 (58%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+ +LVLDEAD++LD G+E I ++IL +P Q+++ SAT +++LA L+ P+
Sbjct: 363 ITYLVLDEADKMLDLGFEHQI---MKILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPM 419
Query: 255 QIDAADSTDIHNTTDSLVIPDSLKQHFIVT 284
+ T D LV D++KQ+ I+T
Sbjct: 420 LVYVG-------TLD-LVAVDTVKQNIIIT 441
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 265 (98.3 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 67/206 (32%), Positives = 115/206 (55%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 109 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 167
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ + ++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 168 VLAPTRELAQQVQQVAAEYSRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 226
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 227 FLEAGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 282
Query: 591 QRLAGMTLQNPIQID--AADSTDIHN 614
++LA L+ + I+ A + + HN
Sbjct: 283 RQLAEDFLKEYVHINIGALELSANHN 308
Score = 251 (93.4 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 59/175 (33%), Positives = 100/175 (57%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T+ T +Q L G D++ +QTGSGKTL+Y +P I + +P + R DG +
Sbjct: 109 NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH-QPFLERGDGPICL 167
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + ++ + + + GG + + +G+ I +ATPGRL+D
Sbjct: 168 VLAPTRELAQQVQQVAAEYSRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 226
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 227 FLEAGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 277
Score = 234 (87.4 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 65/209 (31%), Positives = 111/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L+ + I+ + ++ + L I D
Sbjct: 260 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIG-ALELSANHNILQIVDVC-- 316
Query: 628 HFIVTPPKL-RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
H + KL RL+ + + ++E+K +VF+ T+ D +L + +
Sbjct: 317 HDVEKDDKLIRLM----------EEIMSEKENKTIVFVETKRRCD---DLTRKMRRDGWP 363
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG SQ ER V F+ K+ +LI TDVA+RGLD+ V +++ Y P+SS DY+H
Sbjct: 364 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 423
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRTAR G++ F P+ +K V +L
Sbjct: 424 RIGRTARSTKTGTAYTFFTPNNIKQVNDL 452
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 260 (96.6 bits), Expect = 6.0e-19, P = 6.0e-19
Identities = 71/216 (32%), Positives = 117/216 (54%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPI-LDGGDVLVRSQTGSGKTLAYAIPIIQKLQ 455
G ++ K+L NI T +Q + PI L G D++ +++TGSGKTLA+ +P +
Sbjct: 119 GFPDYVIKSLKNN-NIVAPTPIQ-IQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHIL 176
Query: 456 EMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR 515
+P + DG +++ PTRELA Q + K + I + GG + ++
Sbjct: 177 A-QPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTE-SKIRNTCAYGGVPKSGQIYALK 234
Query: 516 KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 575
+G+ IL+A PGRL+D + T +V +LVLDEAD++LD G+E I + ++ ++ P
Sbjct: 235 QGVHILIACPGRLIDLLEQNVT-NLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR---P 290
Query: 576 QFQSILLSATLTPAVQRLA-GMTLQNPIQIDAADST 610
Q+++ SAT VQ LA + + PIQ++ T
Sbjct: 291 DRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLT 326
Score = 252 (93.8 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 65/209 (31%), Positives = 111/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLA-GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626
+I+ + +P Q+++ SAT VQ LA + + PIQ++ T L S+K
Sbjct: 283 KIVDQIRPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLT--------LTACRSIK 334
Query: 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
Q + ++ L S + Q + +D + +++VF+ T+ AD+ T+ L + +
Sbjct: 335 QEIYLLEEHEKIGNLKSLL----QRIFKDND-RIIVFVETKKNADFITKALRL---DGMP 386
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG Q ER V F++ KS ++I TDVA+RGLD+ V +++ + P+ DYVH
Sbjct: 387 ALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVH 446
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRT R G G+S FL + +L ++L
Sbjct: 447 RIGRTGRAGSHGASFTFLTADKYRLAKDL 475
Score = 230 (86.0 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 60/176 (34%), Positives = 99/176 (56%)
Query: 2 NITQVTTVQQLSIQPI-LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
NI T +Q + PI L G D++ +++TGSGKTLA+ +P + +P + DG
Sbjct: 132 NIVAPTPIQ-IQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILA-QPNLKYGDGPIV 189
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA Q + K + I + GG + +++G+ IL+A PGRL+
Sbjct: 190 LVLAPTRELAEQIRQECIKFSTE-SKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLI 248
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
D + T +V +LVLDEAD++LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 249 DLLEQNVT-NLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR---PDRQTLMWSAT 300
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 41/137 (29%), Positives = 73/137 (53%)
Query: 194 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA-GMTLQN 252
+V +LVLDEAD++LD G+E I + ++ ++ P Q+++ SAT VQ LA + +
Sbjct: 260 RVTYLVLDEADKMLDMGFELQIRKIVDQIR---PDRQTLMWSATWPKEVQALAKDLCKEQ 316
Query: 253 PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKM 312
PIQ++ T L S+KQ + ++ L S + Q + +D + ++
Sbjct: 317 PIQVNVGSLT--------LTACRSIKQEIYLLEEHEKIGNLKSLL----QRIFKDND-RI 363
Query: 313 LVFMATQDMADYHTELL 329
+VF+ T+ AD+ T+ L
Sbjct: 364 IVFVETKKNADFITKAL 380
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 260 (96.6 bits), Expect = 6.0e-19, P = 6.0e-19
Identities = 71/216 (32%), Positives = 117/216 (54%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPI-LDGGDVLVRSQTGSGKTLAYAIPIIQKLQ 455
G ++ K+L NI T +Q + PI L G D++ +++TGSGKTLA+ +P +
Sbjct: 119 GFPDYVIKSLKNN-NIVAPTPIQ-IQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHIL 176
Query: 456 EMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIR 515
+P + DG +++ PTRELA Q + K + I + GG + ++
Sbjct: 177 A-QPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTE-SKIRNTCAYGGVPKSGQIYALK 234
Query: 516 KGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 575
+G+ IL+A PGRL+D + T +V +LVLDEAD++LD G+E I + ++ ++ P
Sbjct: 235 QGVHILIACPGRLIDLLEQNVT-NLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR---P 290
Query: 576 QFQSILLSATLTPAVQRLA-GMTLQNPIQIDAADST 610
Q+++ SAT VQ LA + + PIQ++ T
Sbjct: 291 DRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLT 326
Score = 252 (93.8 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 65/209 (31%), Positives = 111/209 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLA-GMTLQNPIQIDAADSTDIHNTTDSLVIPDSLK 626
+I+ + +P Q+++ SAT VQ LA + + PIQ++ T L S+K
Sbjct: 283 KIVDQIRPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLT--------LTACRSIK 334
Query: 627 QHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
Q + ++ L S + Q + +D + +++VF+ T+ AD+ T+ L + +
Sbjct: 335 QEIYLLEEHEKIGNLKSLL----QRIFKDND-RIIVFVETKKNADFITKALRL---DGMP 386
Query: 687 FFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVH 746
+HG Q ER V F++ KS ++I TDVA+RGLD+ V +++ + P+ DYVH
Sbjct: 387 ALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVH 446
Query: 747 RVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
R+GRT R G G+S FL + +L ++L
Sbjct: 447 RIGRTGRAGSHGASFTFLTADKYRLAKDL 475
Score = 230 (86.0 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 60/176 (34%), Positives = 99/176 (56%)
Query: 2 NITQVTTVQQLSIQPI-LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
NI T +Q + PI L G D++ +++TGSGKTLA+ +P + +P + DG
Sbjct: 132 NIVAPTPIQ-IQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILA-QPNLKYGDGPIV 189
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA Q + K + I + GG + +++G+ IL+A PGRL+
Sbjct: 190 LVLAPTRELAEQIRQECIKFSTE-SKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLI 248
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
D + T +V +LVLDEAD++LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 249 DLLEQNVT-NLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR---PDRQTLMWSAT 300
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 41/137 (29%), Positives = 73/137 (53%)
Query: 194 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLA-GMTLQN 252
+V +LVLDEAD++LD G+E I + ++ ++ P Q+++ SAT VQ LA + +
Sbjct: 260 RVTYLVLDEADKMLDMGFELQIRKIVDQIR---PDRQTLMWSATWPKEVQALAKDLCKEQ 316
Query: 253 PIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKM 312
PIQ++ T L S+KQ + ++ L S + Q + +D + ++
Sbjct: 317 PIQVNVGSLT--------LTACRSIKQEIYLLEEHEKIGNLKSLL----QRIFKDND-RI 363
Query: 313 LVFMATQDMADYHTELL 329
+VF+ T+ AD+ T+ L
Sbjct: 364 IVFVETKKNADFITKAL 380
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 278 (102.9 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
Identities = 77/241 (31%), Positives = 130/241 (53%)
Query: 392 YEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPII 451
+E+ G +P + K++ + + T +Q + +L G D++ +QTG+GKTL+Y +P
Sbjct: 225 FEDAFGPYPELMKSIKKA-GFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGF 283
Query: 452 QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
L +++G +++ PTRELALQ +K S+ + + GG K +
Sbjct: 284 IHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKY--SYKGLKSVCIYGGGNRKGQI 341
Query: 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571
I KG+ I++ATPGRL D + + + +LVLDEAD++LD G+E I ++IL
Sbjct: 342 QDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQI---MKILL 397
Query: 572 KQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIV 631
+P Q+I+ SAT +++LA L+ P+ + T D LV D++KQ+ I+
Sbjct: 398 DVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVG-------TLD-LVAVDTVKQNIII 449
Query: 632 T 632
T
Sbjct: 450 T 450
Score = 235 (87.8 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 60/170 (35%), Positives = 95/170 (55%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q + +L G D++ +QTG+GKTL+Y +P L +++G +++ PT
Sbjct: 248 TPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPT 307
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHT 126
RELALQ +K S+ + + GG K + I KG+ I++ATPGRL D +
Sbjct: 308 RELALQVGAECSKY--SYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLND-LQMN 364
Query: 127 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ + +LVLDEAD++LD G+E I ++IL +P Q+I+ SAT
Sbjct: 365 NFVNLRSITYLVLDEADKMLDLGFEHQI---MKILLDVRPDRQTIMTSAT 411
Score = 206 (77.6 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
Identities = 53/160 (33%), Positives = 87/160 (54%)
Query: 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675
T LV D++KQ+ I+T + + F+ Q+++ + K++VF++ + +AD +
Sbjct: 434 TLDLVAVDTVKQNIIITTEEEKRSLFQEFL----QSLSPKD--KVIVFVSRKLIAD---D 484
Query: 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY 735
L S + + I LHG QS+R F++ K +LI TD+A+RGLD+ V + Y
Sbjct: 485 LSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNY 544
Query: 736 TAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
P + +YVHRVGRT R G G S+ + + K+ EL
Sbjct: 545 NFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGEL 584
Score = 119 (46.9 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 32/90 (35%), Positives = 53/90 (58%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPI 254
+ +LVLDEAD++LD G+E I ++IL +P Q+++ SAT +++LA L+ P+
Sbjct: 372 ITYLVLDEADKMLDLGFEHQI---MKILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPM 428
Query: 255 QIDAADSTDIHNTTDSLVIPDSLKQHFIVT 284
+ T D LV D++KQ+ I+T
Sbjct: 429 LVYVG-------TLD-LVAVDTVKQNIIIT 450
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 269 (99.8 bits), Expect = 8.6e-19, Sum P(2) = 8.6e-19
Identities = 72/224 (32%), Positives = 122/224 (54%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 190 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 248
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 249 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 307
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 308 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 363
Query: 591 QRLAGMTLQNPIQIDAA--DSTDIHNTTDSL-VIPDSLKQHFIV 631
++LA L++ QI+ + + HN + V +S K H ++
Sbjct: 364 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLI 407
Score = 249 (92.7 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 60/175 (34%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 190 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 248
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 249 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 307
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 308 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 358
Score = 239 (89.2 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 66/208 (31%), Positives = 112/208 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ QI+ + ++ + L I D +
Sbjct: 341 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGN-LELSANHNILQIVDVCME 399
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D +L + +
Sbjct: 400 ----SEKDHKLIQLMEEIMA-------EKENKTIIFVETKRRCD---DLTRRMRRDGWPA 445
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V FRS K+ +LI TDVA+RGLD+ V +++ Y P+SS DYVHR
Sbjct: 446 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 505
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR ++G++ F P +K EL
Sbjct: 506 IGRTARSTNKGTAYTFFTPGNLKQAREL 533
Score = 42 (19.8 bits), Expect = 8.6e-19, Sum P(2) = 8.6e-19
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 372 PNVPTRRLKPVSEALFAPTSYEEFPGIHPF 401
P+V TR P +AL +P P ++PF
Sbjct: 51 PSVVTR---PEPQALPSPAIRAPLPDLYPF 77
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 269 (99.8 bits), Expect = 8.6e-19, Sum P(2) = 8.6e-19
Identities = 72/224 (32%), Positives = 122/224 (54%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 190 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 248
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 249 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 307
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 308 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 363
Query: 591 QRLAGMTLQNPIQIDAA--DSTDIHNTTDSL-VIPDSLKQHFIV 631
++LA L++ QI+ + + HN + V +S K H ++
Sbjct: 364 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLI 407
Score = 249 (92.7 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 60/175 (34%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 190 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 248
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 249 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 307
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 308 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 358
Score = 239 (89.2 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 66/208 (31%), Positives = 112/208 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ QI+ + ++ + L I D +
Sbjct: 341 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGN-LELSANHNILQIVDVCME 399
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D +L + +
Sbjct: 400 ----SEKDHKLIQLMEEIMA-------EKENKTIIFVETKRRCD---DLTRRMRRDGWPA 445
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V FRS K+ +LI TDVA+RGLD+ V +++ Y P+SS DYVHR
Sbjct: 446 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 505
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR ++G++ F P +K EL
Sbjct: 506 IGRTARSTNKGTAYTFFTPGNLKQAREL 533
Score = 42 (19.8 bits), Expect = 8.6e-19, Sum P(2) = 8.6e-19
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 372 PNVPTRRLKPVSEALFAPTSYEEFPGIHPF 401
P+V TR P +AL +P P ++PF
Sbjct: 51 PSVVTR---PEPQALPSPAIRAPLPDLYPF 77
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 269 (99.8 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 72/224 (32%), Positives = 122/224 (54%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 192 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 250
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 251 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 309
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 310 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 365
Query: 591 QRLAGMTLQNPIQIDAA--DSTDIHNTTDSL-VIPDSLKQHFIV 631
++LA L++ QI+ + + HN + V +S K H ++
Sbjct: 366 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLI 409
Score = 249 (92.7 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 60/175 (34%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 192 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 250
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 251 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 309
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 310 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 360
Score = 239 (89.2 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 66/208 (31%), Positives = 112/208 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ QI+ + ++ + L I D +
Sbjct: 343 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGN-LELSANHNILQIVDVCME 401
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D +L + +
Sbjct: 402 ----SEKDHKLIQLMEEIMA-------EKENKTIIFVETKRRCD---DLTRRMRRDGWPA 447
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V FRS K+ +LI TDVA+RGLD+ V +++ Y P+SS DYVHR
Sbjct: 448 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 507
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR ++G++ F P +K EL
Sbjct: 508 IGRTARSTNKGTAYTFFTPGNLKQAREL 535
Score = 42 (19.8 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 372 PNVPTRRLKPVSEALFAPTSYEEFPGIHPF 401
P+V TR P +AL +P P ++PF
Sbjct: 53 PSVVTR---PEPQALPSPAIRAPLPDLYPF 79
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 269 (99.8 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 72/224 (32%), Positives = 122/224 (54%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 192 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 250
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 251 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 309
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V
Sbjct: 310 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEV 365
Query: 591 QRLAGMTLQNPIQIDAA--DSTDIHNTTDSL-VIPDSLKQHFIV 631
++LA L++ QI+ + + HN + V +S K H ++
Sbjct: 366 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLI 409
Score = 249 (92.7 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 60/175 (34%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
+ T+ T +Q L G D++ +QTGSGKTLAY +P I + +P + R DG +
Sbjct: 192 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINH-QPYLERGDGPICL 250
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ K + + + + GG + + +G+ I +ATPGRL+D
Sbjct: 251 VLAPTRELAQQVQQVADDYGKC-SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 309
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 310 FLESGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 360
Score = 239 (89.2 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 66/208 (31%), Positives = 112/208 (53%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L++ QI+ + ++ + L I D +
Sbjct: 343 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGN-LELSANHNILQIVDVCME 401
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D +L + +
Sbjct: 402 ----SEKDHKLIQLMEEIMA-------EKENKTIIFVETKRRCD---DLTRRMRRDGWPA 447
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG SQ ER V FRS K+ +LI TDVA+RGLD+ V +++ Y P+SS DYVHR
Sbjct: 448 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 507
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR ++G++ F P +K EL
Sbjct: 508 IGRTARSTNKGTAYTFFTPGNLKQAREL 535
Score = 42 (19.8 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 372 PNVPTRRLKPVSEALFAPTSYEEFPGIHPF 401
P+V TR P +AL +P P ++PF
Sbjct: 53 PSVVTR---PEPQALPSPAIRAPLPDLYPF 79
>UNIPROTKB|F5H5U2 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AC055713 EMBL:AC117503
HGNC:HGNC:20085 ChiTaRS:DDX55 IPI:IPI01010332
ProteinModelPortal:F5H5U2 SMR:F5H5U2 Ensembl:ENST00000538744
ArrayExpress:F5H5U2 Bgee:F5H5U2 Uniprot:F5H5U2
Length = 569
Score = 362 (132.5 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 111/331 (33%), Positives = 172/331 (51%)
Query: 391 SYEEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
S+E P +HP + L E + +T VQ +I + DV + TGSGKTLA+ IP
Sbjct: 8 SWESLPVPLHPQVLGALRE-LGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIP 66
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI---FTKLCKSFTWIVPSWLTGGEK 506
I++ L K+ +K + A+II PTRELA+Q E+ FTK F+ I+ W+ GG
Sbjct: 67 ILEILLRREEKL-KKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQIL--WI-GGRN 122
Query: 507 MKSEKARIRK-GISILVATPGRLLDHCKH-TETLKFSK----VEHLVLDEADRILDQGYE 560
+ R ++ G +I+VATPGRL D + E L + ++ LVLDEADR+LD G+E
Sbjct: 123 PGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFE 182
Query: 561 RDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLV 620
I LE L KQ+ ++ L SAT T V+ L L+NP+++ + ++
Sbjct: 183 ASINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKT- 238
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
P L+ +++V + L F+ N +E K LVF +T +Y+ + L V
Sbjct: 239 -PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLVFFSTCACVEYYGKALE-V 289
Query: 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
L + + +HG M +R ++F FR ++S
Sbjct: 290 LVKGVKIMCIHGKMKY-KRNKIFMEFRKLQS 319
Score = 262 (97.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 75/182 (41%), Positives = 105/182 (57%)
Query: 6 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 65
+T VQ +I + DV + TGSGKTLA+ IPI++ L K+ +K + A+II P
Sbjct: 32 MTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKL-KKSQVGAIIITP 90
Query: 66 TRELALQTLEI---FTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRLLD 121
TRELA+Q E+ FTK F+ I+ W+ GG + R ++ G +I+VATPGRL D
Sbjct: 91 TRELAIQIDEVLSHFTKHFPEFSQIL--WI-GGRNPGEDVERFKQQGGNIIVATPGRLED 147
Query: 122 HCKH-TETLKFSK----VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ E L + ++ LVLDEADR+LD G+E I LE L KQ+ ++ L SAT
Sbjct: 148 MFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSAT 204
Query: 177 LT 178
T
Sbjct: 205 QT 206
Score = 140 (54.3 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 42/132 (31%), Positives = 66/132 (50%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQID 257
LVLDEADR+LD G+E I LE L KQ+ ++ L SAT T V+ L L+NP+++
Sbjct: 168 LVLDEADRLLDMGFEASINTILEFLPKQR---RTGLFSATQTQEVENLVRAGLRNPVRVS 224
Query: 258 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 317
+ ++ P L+ +++V + L F+ N +E K LVF +
Sbjct: 225 VKEKGVAASSAQKT--PSRLENYYMVCKADEKFNQLVHFLR------NHKQE-KHLVFFS 275
Query: 318 TQDMADYHTELL 329
T +Y+ + L
Sbjct: 276 TCACVEYYGKAL 287
Score = 110 (43.8 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 744 YVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQ-NRRIRIEEIK 786
+VHR GRTAR+GH GS+L+FL+P E + L N++ ++E+K
Sbjct: 321 FVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMK 364
Score = 66 (28.3 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 22/96 (22%), Positives = 41/96 (42%)
Query: 785 IKLKDCLQNLLSVKMEGDLSRLADGNVETAATALQMSFESAVLQQKILHTSACKGYTSWV 844
+ +++ N L++ + L + TA L +S L + + K + S+V
Sbjct: 342 LPMEESYINFLAINQKCPLQEMKPQR-NTAD--LLPKLKSMALADRAVFEKGMKAFVSYV 398
Query: 845 RFYASYSKDLRHIFNFKQIHLGHFAKSFALRDAPSV 880
+ YA + +L IF K + A+ FAL P +
Sbjct: 399 QAYAKHECNL--IFRLKDLDFASLARGFALLRMPKM 432
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 430 (156.4 bits), Expect = 3.5e-37, P = 3.5e-37
Identities = 130/404 (32%), Positives = 201/404 (49%)
Query: 390 TSYEEFPGIHP---FMKKNLNEGM--NI-----TQVTTVQQLSIQPILDGGDVLVRSQTG 439
TS E+ GI P F + NL E M N+ ++ T +QQ ++ + G D++ +QTG
Sbjct: 329 TSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTG 388
Query: 440 SGKTLAYAIPIIQKL-QEMRPKISRKDGIY--AVIILPTRELALQTLEIFTKLC-KSFTW 495
SGKT A+ +PI+ +L + + + G Y +I+ PTRELA Q K ++
Sbjct: 389 SGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMME 448
Query: 496 IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555
I P + GG + K +I KG +I+V T GR+ C+ T+K K VLDEADR++
Sbjct: 449 IKPVY--GGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEG-TIKLDKCRFFVLDEADRMI 505
Query: 556 D-QGYERDIAEFLEI-LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIH 613
D G+ DI + +K Q+++ SAT +VQ A L+ + A D
Sbjct: 506 DAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAA 565
Query: 614 NTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDE--ESKMLVFMATQDMAD 671
N V+ + + + K +L+ L + E K +VF++ + MAD
Sbjct: 566 N---KCVLQEF--ERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMAD 620
Query: 672 YHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDW 731
+LS+ + +HG+ Q ER+E + FR+ VLI T VA RGLD+ VD
Sbjct: 621 TLASILSSA---QVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDH 677
Query: 732 IVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
++ Y P + DY+HR+GRT RVG+ G + F I + L+ EL
Sbjct: 678 VINYDMPDNIDDYIHRIGRTGRVGNSGRATSF-ISEDCSLLSEL 720
Score = 227 (85.0 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 84/309 (27%), Positives = 141/309 (45%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIY--A 60
++ T +QQ ++ + G D++ +QTGSGKT A+ +PI+ +L + + + G Y
Sbjct: 362 SKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRC 421
Query: 61 VIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
+I+ PTRELA Q K ++ I P + GG + K +I KG +I+V T GR+
Sbjct: 422 IILTPTRELADQIYNEGRKFAYQTMMEIKPVY--GGLAVGYNKGQIEKGATIIVGTVGRI 479
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEFLEI-LKKQKPQFQSILLSATL 177
C+ T+K K VLDEADR++D G+ DI + +K Q+++ SAT
Sbjct: 480 KHFCEEG-TIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATF 538
Query: 178 TP-----ATCWCKHTETL----KFSKVEHLVLDEADRILDQGYERD-IAEFL--EILKKQ 225
A + + + K VL E +R ++ ++D + E L +I
Sbjct: 539 PDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERC-ERSEKKDKLLELLGIDIDSYT 597
Query: 226 KPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP 285
+ V T+ QR TL + + + IH + ++L+Q +
Sbjct: 598 TEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSK 657
Query: 286 PKLRLVALA 294
P L A+A
Sbjct: 658 PVLIATAVA 666
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 430 (156.4 bits), Expect = 3.5e-37, P = 3.5e-37
Identities = 130/404 (32%), Positives = 201/404 (49%)
Query: 390 TSYEEFPGIHP---FMKKNLNEGM--NI-----TQVTTVQQLSIQPILDGGDVLVRSQTG 439
TS E+ GI P F + NL E M N+ ++ T +QQ ++ + G D++ +QTG
Sbjct: 329 TSSEKTVGIKPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTG 388
Query: 440 SGKTLAYAIPIIQKL-QEMRPKISRKDGIY--AVIILPTRELALQTLEIFTKLC-KSFTW 495
SGKT A+ +PI+ +L + + + G Y +I+ PTRELA Q K ++
Sbjct: 389 SGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMME 448
Query: 496 IVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRIL 555
I P + GG + K +I KG +I+V T GR+ C+ T+K K VLDEADR++
Sbjct: 449 IKPVY--GGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEG-TIKLDKCRFFVLDEADRMI 505
Query: 556 D-QGYERDIAEFLEI-LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIH 613
D G+ DI + +K Q+++ SAT +VQ A L+ + A D
Sbjct: 506 DAMGFGTDIETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAA 565
Query: 614 NTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDE--ESKMLVFMATQDMAD 671
N V+ + + + K +L+ L + E K +VF++ + MAD
Sbjct: 566 N---KCVLQEF--ERCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMAD 620
Query: 672 YHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDW 731
+LS+ + +HG+ Q ER+E + FR+ VLI T VA RGLD+ VD
Sbjct: 621 TLASILSSA---QVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDH 677
Query: 732 IVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
++ Y P + DY+HR+GRT RVG+ G + F I + L+ EL
Sbjct: 678 VINYDMPDNIDDYIHRIGRTGRVGNSGRATSF-ISEDCSLLSEL 720
Score = 227 (85.0 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 84/309 (27%), Positives = 141/309 (45%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIY--A 60
++ T +QQ ++ + G D++ +QTGSGKT A+ +PI+ +L + + + G Y
Sbjct: 362 SKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGEGGCYPRC 421
Query: 61 VIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
+I+ PTRELA Q K ++ I P + GG + K +I KG +I+V T GR+
Sbjct: 422 IILTPTRELADQIYNEGRKFAYQTMMEIKPVY--GGLAVGYNKGQIEKGATIIVGTVGRI 479
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEFLEI-LKKQKPQFQSILLSATL 177
C+ T+K K VLDEADR++D G+ DI + +K Q+++ SAT
Sbjct: 480 KHFCEEG-TIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNYDSMPRKENRQTLMFSATF 538
Query: 178 TP-----ATCWCKHTETL----KFSKVEHLVLDEADRILDQGYERD-IAEFL--EILKKQ 225
A + + + K VL E +R ++ ++D + E L +I
Sbjct: 539 PDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERC-ERSEKKDKLLELLGIDIDSYT 597
Query: 226 KPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTP 285
+ V T+ QR TL + + + IH + ++L+Q +
Sbjct: 598 TEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSK 657
Query: 286 PKLRLVALA 294
P L A+A
Sbjct: 658 PVLIATAVA 666
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 292 (107.8 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 77/240 (32%), Positives = 130/240 (54%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 475
T +Q +I I++G D++ ++TGSGKT+A+ +P+ + + + R + +G AVI+ PT
Sbjct: 395 TPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRA-LEEGEGPIAVIMTPT 453
Query: 476 RELALQTLEIFTKLCKSFTWIVPSWLT---GGEKMKSEKARIRKGISILVATPGRLLDH- 531
RELALQ TK CK F+ + + GG + + A +++G I+V TPGR++D
Sbjct: 454 RELALQ----ITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 509
Query: 532 -CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ +V ++VLDEADR+ D G+E + + I+ +P Q+++ SAT A+
Sbjct: 510 AANNGRVTNLRRVTYVVLDEADRMFDMGFEPQV---MRIVDNVRPDRQTVMFSATFPRAM 566
Query: 591 QRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 650
+ LA L PI++ S+V D ++QH IV + + + L +LG Q
Sbjct: 567 EALARRILSKPIEVQVGGR--------SVVCSD-VEQHVIVIEEENKFLKLLE-LLGHYQ 616
Score = 260 (96.6 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 61/179 (34%), Positives = 103/179 (57%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T +Q +I I++G D++ ++TGSGKT+A+ +P+ + + + R + +G AVI+ PT
Sbjct: 395 TPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRA-LEEGEGPIAVIMTPT 453
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLT---GGEKMKSEKARIRKGISILVATPGRLLDH- 122
RELALQ TK CK F+ + + GG + + A +++G I+V TPGR++D
Sbjct: 454 RELALQ----ITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 509
Query: 123 -CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
+ +V ++VLDEADR+ D G+E + + I+ +P Q+++ SAT A
Sbjct: 510 AANNGRVTNLRRVTYVVLDEADRMFDMGFEPQV---MRIVDNVRPDRQTVMFSATFPRA 565
Score = 198 (74.8 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 46/156 (29%), Positives = 82/156 (52%)
Query: 620 VIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLST 679
V+ ++QH IV + + + L +LG Q E+ +++F+ Q+ AD LL
Sbjct: 587 VVCSDVEQHVIVIEEENKFLKLLE-LLGHYQ-----EKGSVIIFVDKQEHAD---GLLKD 637
Query: 680 VLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS 739
++ + LHG + Q +R + F++ +L+ T VAARGLD+ + +V Y+ P+
Sbjct: 638 LMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPN 697
Query: 740 SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
DYVHR GRT R G++G + F+ + + ++
Sbjct: 698 HYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDI 733
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 305 (112.4 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 78/208 (37%), Positives = 126/208 (60%)
Query: 399 HPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
H K +G N Q T +Q+ +I I+DG DV+ S+TGSGKT A+ IP++QKL+
Sbjct: 33 HSVYKAIEKKGFN--QPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLK--- 87
Query: 459 PKISRKD--GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
R+D GI A+++ PTRELALQT ++ +L + FT + + L GG++++ + + I +
Sbjct: 88 ----RRDTTGIRALMVSPTRELALQTFKVVKELGR-FTGLRCACLVGGDQIEEQFSTIHE 142
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
IL+ATPGRLL H L+ S V+++V DEADR+ + G++ + E L+ + + +
Sbjct: 143 NPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESR-- 199
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQI 604
Q++L SATL + A L +P+ +
Sbjct: 200 -QTLLFSATLPKMLVDFAKAGLTDPMLV 226
Score = 294 (108.6 bits), Expect = 6.9e-36, Sum P(2) = 6.9e-36
Identities = 71/175 (40%), Positives = 114/175 (65%)
Query: 5 QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKD--GIYAVI 62
Q T +Q+ +I I+DG DV+ S+TGSGKT A+ IP++QKL+ R+D GI A++
Sbjct: 46 QPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLK-------RRDTTGIRALM 98
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
+ PTRELALQT ++ +L + FT + + L GG++++ + + I + IL+ATPGRLL H
Sbjct: 99 VSPTRELALQTFKVVKELGR-FTGLRCACLVGGDQIEEQFSTIHENPDILLATPGRLL-H 156
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
L+ S V+++V DEADR+ + G++ + E L+ + + + Q++L SATL
Sbjct: 157 VIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESR---QTLLFSATL 208
Score = 182 (69.1 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 45/155 (29%), Positives = 80/155 (51%)
Query: 621 IPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTV 680
+ D L F + P +L AL L C+ ++ E + +VF AT +Y +L
Sbjct: 234 VSDKLSMVFCMCRPDEKLFAL----LHLCRRMDR-ENKQTVVFCATMKHVEYVVGILHRA 288
Query: 681 LGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSS 740
G + +F ++ + + R + F ++ +L+ TDVAARG+D+PL+D ++ P
Sbjct: 289 -GIDCSF--VYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPK 345
Query: 741 STDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+ +VHRVGR AR G G+++ + E+ + +L
Sbjct: 346 AKLFVHRVGRVARAGRSGTAISLIANDELPYLTDL 380
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 277 (102.6 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 70/223 (31%), Positives = 124/223 (55%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
++++F + + K +N M + T +Q +I L DV+ ++QTG+GKT A+ IP+
Sbjct: 4 TFQDF-NLSSDLMKAINR-MGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPL 61
Query: 451 IQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSF-TWIVPSWLTGGEKMKS 509
++K+ P I A++I PTRELA+Q E K+ + ++P + GG+ +
Sbjct: 62 VEKINPESPNIQ------AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIY--GGQDIGR 113
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ ++K +I+V TPGRLLDH T++ + V +V+DEAD +L+ G+ DI I
Sbjct: 114 QIRALKKNPNIIVGTPGRLLDHINR-RTIRLNNVNTVVMDEADEMLNMGFIDDIES---I 169
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNP--IQIDAADST 610
L + Q++L SAT+ ++R+A + P +++ A + T
Sbjct: 170 LSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMT 212
Score = 255 (94.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 64/181 (35%), Positives = 103/181 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +Q +I L DV+ ++QTG+GKT A+ IP+++K+ P I A
Sbjct: 21 MGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQ------A 74
Query: 61 VIILPTRELALQTLEIFTKLCKSF-TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++I PTRELA+Q E K+ + ++P + GG+ + + ++K +I+V TPGRL
Sbjct: 75 IVIAPTRELAIQVSEELYKIGQDKRAKVLPIY--GGQDIGRQIRALKKNPNIIVGTPGRL 132
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
LDH T++ + V +V+DEAD +L+ G+ DI IL + Q++L SAT+ P
Sbjct: 133 LDHINR-RTIRLNNVNTVVMDEADEMLNMGFIDDIES---ILSNVPSEHQTLLFSATM-P 187
Query: 180 A 180
A
Sbjct: 188 A 188
Score = 199 (75.1 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 49/161 (30%), Positives = 83/161 (51%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
+VF T+ D E L+ A +HG ++Q++R + F+ VL+ TDVA
Sbjct: 245 IVFGRTKRRVDELAEALNL---RGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 301
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQN 777
ARGLD+ V + + P YVHR+GRT R G G ++ F+ P E ++ +E+
Sbjct: 302 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTK 361
Query: 778 RRI-RIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAATA 817
R++ R++E L + L+ V +E + +++ N+ TA
Sbjct: 362 RKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTA 402
Score = 96 (38.9 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGM 248
T++ + V +V+DEAD +L+ G+ DI IL + Q++L SAT+ ++R+A
Sbjct: 140 TIRLNNVNTVVMDEADEMLNMGFIDDIES---ILSNVPSEHQTLLFSATMPAPIKRIAER 196
Query: 249 TLQNP--IQIDAADST 262
+ P +++ A + T
Sbjct: 197 FMTEPEHVKVKAKEMT 212
Score = 39 (18.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 368 NPDIPNV------PTRRLK-PVSEALF 387
NP+ PN+ PTR L VSE L+
Sbjct: 66 NPESPNIQAIVIAPTRELAIQVSEELY 92
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 291 (107.5 bits), Expect = 5.7e-37, Sum P(3) = 5.7e-37
Identities = 80/243 (32%), Positives = 127/243 (52%)
Query: 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYA 469
I T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y
Sbjct: 200 ILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 259
Query: 470 VIILPTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
+II P+RELA QT LE + +L + S + + GG +K + +R G+ I+VAT
Sbjct: 260 LIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVAT 319
Query: 525 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584
PGRL+D + + + +L LDEADR++D G+E DI K Q+ Q++L SA
Sbjct: 320 PGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSA 375
Query: 585 TLTPAVQRLAGMTLQNPIQIDA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLR 637
T+ +Q A L P+ I+ A + + + + + K +++ TPP +
Sbjct: 376 TMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 435
Query: 638 LVA 640
+ A
Sbjct: 436 IFA 438
Score = 268 (99.4 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 69/182 (37%), Positives = 103/182 (56%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYA 60
I T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y
Sbjct: 200 ILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 259
Query: 61 VIILPTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 115
+II P+RELA QT LE + +L + S + + GG +K + +R G+ I+VAT
Sbjct: 260 LIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVAT 319
Query: 116 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175
PGRL+D + + + +L LDEADR++D G+E DI K Q+ Q++L SA
Sbjct: 320 PGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSA 375
Query: 176 TL 177
T+
Sbjct: 376 TM 377
Score = 187 (70.9 bits), Expect = 5.7e-37, Sum P(3) = 5.7e-37
Identities = 53/157 (33%), Positives = 81/157 (51%)
Query: 660 MLVFMATQ-DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
+L+F + D+ H LL + E +A +HG Q ERT+ + FR K VL+ TD
Sbjct: 434 VLIFAKKKADVDAIHEYLLLKGV-EAVA---IHGGKDQEERTKAIEAFREGKKDVLVATD 489
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778
VA++GLD P + ++ Y P +YVHR+GRT R G+ G + F+ + + V L +
Sbjct: 490 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESV--LMDL 547
Query: 779 RIRIEEIKLKDCLQNLLSVKMEGDLSRLADGNVETAA 815
+ + E K K + +L V GD S L G + A
Sbjct: 548 KALLLEAKQK--VPPVLQVLHCGDESMLDIGGEQGCA 582
Score = 110 (43.8 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 197 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+L LDEADR++D G+E DI K Q+ Q++L SAT+ +Q A L P+ I
Sbjct: 339 YLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPKKIQNFAKSALVKPVTI 395
Query: 257 DA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 292
+ A + + + + + K +++ TPP + + A
Sbjct: 396 NVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 438
Score = 46 (21.3 bits), Expect = 5.7e-37, Sum P(3) = 5.7e-37
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 199 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQ 255
+LD+ R+ ++ R + + LK+++ +SV L + G+T +PI+
Sbjct: 86 LLDQHQRLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 142
Score = 45 (20.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+LD+ R+ ++ R + + LK+++ +S+ L + G+T +PI+
Sbjct: 86 LLDQHQRLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 142
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 275 (101.9 bits), Expect = 5.9e-37, Sum P(2) = 5.9e-37
Identities = 94/316 (29%), Positives = 160/316 (50%)
Query: 365 FQNNPDIPNV-PT---RRLKPVS---EALFAPTSYEEFPGIHP-FMKKNLNEGMNITQVT 416
F +PD+P++ P R+ V+ E + AP E G+ P +++ L+ G T
Sbjct: 402 FVTSPDVPHLSPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGF--PSPT 459
Query: 417 TVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTR 476
+Q + L D++ ++TGSGKTL Y IP L+ R SR +G +I+ PTR
Sbjct: 460 PIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRND-SR-NGPTVLILAPTR 517
Query: 477 ELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTE 536
ELA Q + + +S + I + L GG + + +G I+VATPGRL D + +
Sbjct: 518 ELATQIQDEALRFGRS-SRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILE-MK 575
Query: 537 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGM 596
+ F +V LVLDEADR+LD G+E I + I+ + P+ Q+++ +AT V+++A
Sbjct: 576 MIDFQQVSLLVLDEADRMLDMGFEPQIRK---IVNEIPPRRQTLMYTATWPKEVRKIASD 632
Query: 597 TLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDE 656
L NP+Q++ D L ++ Q+ V P + L + +++
Sbjct: 633 LLVNPVQVNIG-------RVDELAANKAITQYVEVVPQMEKERRLEQILR------SQER 679
Query: 657 ESKMLVFMATQDMADY 672
SK+++F +T+ + D+
Sbjct: 680 GSKVIIFCSTKRLCDH 695
Score = 224 (83.9 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 69/219 (31%), Positives = 114/219 (52%)
Query: 11 QLSIQPI-LDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69
Q PI L D++ ++TGSGKTL Y IP L+ R SR +G +I+ PTREL
Sbjct: 462 QAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRND-SR-NGPTVLILAPTREL 519
Query: 70 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 129
A Q + + +S + I + L GG + + +G I+VATPGRL D + + +
Sbjct: 520 ATQIQDEALRFGRS-SRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILE-MKMI 577
Query: 130 KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTET 189
F +V LVLDEADR+LD G+E I + I+ + P+ Q+++ +AT W K
Sbjct: 578 DFQQVSLLVLDEADRMLDMGFEPQIRK---IVNEIPPRRQTLMYTAT------WPKEVRK 628
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 228
+ + + V R+ + + I +++E++ + + +
Sbjct: 629 IASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKE 667
Score = 215 (80.7 bits), Expect = 5.9e-37, Sum P(2) = 5.9e-37
Identities = 46/123 (37%), Positives = 70/123 (56%)
Query: 653 NEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSG 712
+++ SK+++F +T+ + D+ L+ +G + +HG +Q ER V FRS KS
Sbjct: 676 SQERGSKVIIFCSTKRLCDH----LARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSC 731
Query: 713 VLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLV 772
VLI TDVAARGLD+ + ++ Y P+ DYVHR+GRT R G G + F + K
Sbjct: 732 VLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYA 791
Query: 773 EEL 775
+L
Sbjct: 792 PDL 794
Score = 128 (50.1 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 37/135 (27%), Positives = 70/135 (51%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
+ F +V LVLDEADR+LD G+E I + I+ + P+ Q+++ +AT V+++A
Sbjct: 577 IDFQQVSLLVLDEADRMLDMGFEPQIRK---IVNEIPPRRQTLMYTATWPKEVRKIASDL 633
Query: 250 LQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEE 309
L NP+Q++ D L ++ Q+ V P + L + +++
Sbjct: 634 LVNPVQVNIG-------RVDELAANKAITQYVEVVPQMEKERRLEQILR------SQERG 680
Query: 310 SKMLVFMATQDMADY 324
SK+++F +T+ + D+
Sbjct: 681 SKVIIFCSTKRLCDH 695
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 293 (108.2 bits), Expect = 6.1e-37, Sum P(2) = 6.1e-37
Identities = 86/236 (36%), Positives = 125/236 (52%)
Query: 413 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 472
T+ T +Q +I P LDG DVL + TG+GKT AY +P +Q L + P+ +K G ++I
Sbjct: 25 TRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDF-PR--KKSGPPRILI 81
Query: 473 L-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 531
L PTRELA+Q + +L K T + + +TGG + + I+VAT GRLL +
Sbjct: 82 LTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQY 140
Query: 532 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT-PAV 590
K E VE L+LDEADR+LD G+ +DI + +K Q++L SATL A+
Sbjct: 141 IKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK---QTLLFSATLEGDAI 196
Query: 591 QRLAGMTLQNPIQIDAADST----DIHN---TTDSLVIPDSLKQHFIVTPPKLRLV 639
Q A L++P+++ A ST IH D L +L H + P R +
Sbjct: 197 QDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSI 252
Score = 259 (96.2 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 70/175 (40%), Positives = 100/175 (57%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVII 63
T+ T +Q +I P LDG DVL + TG+GKT AY +P +Q L + P+ +K G ++I
Sbjct: 25 TRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDF-PR--KKSGPPRILI 81
Query: 64 L-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
L PTRELA+Q + +L K T + + +TGG + + I+VAT GRLL +
Sbjct: 82 LTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQY 140
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
K E VE L+LDEADR+LD G+ +DI + +K Q++L SATL
Sbjct: 141 IKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK---QTLLFSATL 191
Score = 174 (66.3 bits), Expect = 6.1e-37, Sum P(2) = 6.1e-37
Identities = 46/144 (31%), Positives = 77/144 (53%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+ + E ++ +VF+ ++ H EL + + I L G M Q +R E K +
Sbjct: 243 LKQPEATRSIVFVRKRERV--H-ELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 299
Query: 712 GVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF------LI 765
VL+ TDVAARG+D+P V + + P S Y+HR+GRTAR G +G+++ L+
Sbjct: 300 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 359
Query: 766 PSEV-KLVEELQNRRIRIEEIKLK 788
+V + +EE R+ I+E++ K
Sbjct: 360 LGKVGRYIEEPIKARV-IDELRPK 382
Score = 120 (47.3 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 37/105 (35%), Positives = 54/105 (51%)
Query: 195 VEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLT-PAVQRLAGMTLQNP 253
VE L+LDEADR+LD G+ +DI + +K Q++L SATL A+Q A L++P
Sbjct: 151 VETLILDEADRMLDMGFAQDIEHIAGETRWRK---QTLLFSATLEGDAIQDFAERLLEDP 207
Query: 254 IQIDAADST----DIHN---TTDSLVIPDSLKQHFIVTPPKLRLV 291
+++ A ST IH D L +L H + P R +
Sbjct: 208 VEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSI 252
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 268 (99.4 bits), Expect = 6.8e-37, Sum P(2) = 6.8e-37
Identities = 80/260 (30%), Positives = 141/260 (54%)
Query: 389 PT-SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYA 447
PT ++++ +P + +N+ + + T +Q + +L G D++ +QTG+GKTL Y
Sbjct: 239 PTCTFDDAFQCYPEVMENIKKA-GFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYL 297
Query: 448 IPIIQKLQEMRPKISRKDGIYAVIIL-PTRELALQTLEIFTKLCK-SFTWIVPSWLTGGE 505
+P L ++P + + +++L PTRELALQ + + CK S+ + + GG
Sbjct: 298 MPGFIHLV-LQPSLKGQRNRPGMLVLTPTRELALQ---VEGECCKYSYKGLRSVCVYGGG 353
Query: 506 KMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAE 565
+ ++KG+ I++ATPGRL D + + + + +LVLDEAD++LD G+E I
Sbjct: 354 NRDEQIEELKKGVDIIIATPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQI-- 410
Query: 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625
++IL +P Q+++ SAT +V RLA L+ P+ + T D LV S+
Sbjct: 411 -MKILLDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVG-------TLD-LVAVSSV 461
Query: 626 KQHFIVTPPKLRLVALASFI 645
KQ+ IVT + + + +F+
Sbjct: 462 KQNIIVTTEEEKWSHMQTFL 481
Score = 227 (85.0 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 59/172 (34%), Positives = 99/172 (57%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-P 65
T +Q + +L G D++ +QTG+GKTL Y +P L ++P + + +++L P
Sbjct: 266 TPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV-LQPSLKGQRNRPGMLVLTP 324
Query: 66 TRELALQTLEIFTKLCK-SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCK 124
TRELALQ + + CK S+ + + GG + ++KG+ I++ATPGRL D +
Sbjct: 325 TRELALQ---VEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLND-LQ 380
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ + + +LVLDEAD++LD G+E I ++IL +P Q+++ SAT
Sbjct: 381 MSNFVNLKNITYLVLDEADKMLDMGFEPQI---MKILLDVRPDRQTVMTSAT 429
Score = 214 (80.4 bits), Expect = 6.8e-37, Sum P(2) = 6.8e-37
Identities = 54/162 (33%), Positives = 94/162 (58%)
Query: 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTE 675
T LV S+KQ+ IVT + + + +F+ Q+++ + K++VF++ + +AD+ +
Sbjct: 452 TLDLVAVSSVKQNIIVTTEEEKWSHMQTFL----QSMSSTD--KVIVFVSRKAVADHLSS 505
Query: 676 LLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQY 735
L +LG NI+ LHG Q +R + + F++ K +LI TD+A+RGLD+ V + +
Sbjct: 506 DL--ILG-NISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNF 562
Query: 736 TAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
P + +YVHR+GRT R G G S+ L ++ ++ EL N
Sbjct: 563 DFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 604
Score = 124 (48.7 bits), Expect = 0.00057, P = 0.00057
Identities = 37/108 (34%), Positives = 59/108 (54%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
+ + +LVLDEAD++LD G+E I ++IL +P Q+V+ SAT +V RLA
Sbjct: 385 VNLKNITYLVLDEADKMLDMGFEPQI---MKILLDVRPDRQTVMTSATWPHSVHRLAQSY 441
Query: 250 LQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 297
L+ P+ + T D LV S+KQ+ IVT + + + +F+
Sbjct: 442 LKEPMIVYVG-------TLD-LVAVSSVKQNIIVTTEEEKWSHMQTFL 481
Score = 42 (19.8 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 277 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMAD 323
LK+ IV L LVA++S E++ S M F+ + D
Sbjct: 442 LKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTD 488
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 287 (106.1 bits), Expect = 7.1e-37, Sum P(2) = 7.1e-37
Identities = 74/216 (34%), Positives = 121/216 (56%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T++ + G+ + + LN+ + + + +Q I +L+G DVL +QTGSGKT A+++P
Sbjct: 6 TTFADL-GLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLP 63
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
++Q L P++ +++ PTRELA+Q E T K + L GG++
Sbjct: 64 LLQNLD---PELKAPQ---ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ +R+G I+V TPGRLLDH K TL SK+ LVLDEAD +L G+ D+ E
Sbjct: 118 QLRALRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADEMLRMGFIEDV----ET 172
Query: 570 LKKQKPQ-FQSILLSATLTPAVQRLAGMTLQNPIQI 604
+ Q P+ Q+ L SAT+ A++R+ ++ P ++
Sbjct: 173 IMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEV 208
Score = 266 (98.7 bits), Expect = 1.6e-34, Sum P(2) = 1.6e-34
Identities = 68/173 (39%), Positives = 98/173 (56%)
Query: 9 VQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRE 68
+Q I +L+G DVL +QTGSGKT A+++P++Q L P++ +++ PTRE
Sbjct: 32 IQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD---PELKAPQ---ILVLAPTRE 85
Query: 69 LALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTET 128
LA+Q E T K + L GG++ + +R+G I+V TPGRLLDH K T
Sbjct: 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG-T 144
Query: 129 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ-FQSILLSATLTPA 180
L SK+ LVLDEAD +L G+ D+ E + Q P+ Q+ L SAT+ A
Sbjct: 145 LDLSKLSGLVLDEADEMLRMGFIEDV----ETIMAQIPEGHQTALFSATMPEA 193
Score = 193 (73.0 bits), Expect = 7.1e-37, Sum P(2) = 7.1e-37
Identities = 47/135 (34%), Positives = 76/135 (56%)
Query: 654 EDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713
ED ++ ++F+ T++ E L G N A L+G M+Q+ R + + + + +
Sbjct: 243 EDFDAA-IIFVRTKNATLEVAEALERN-GYNSA--ALNGDMNQALREQTLERLKDGRLDI 298
Query: 714 LICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVE 773
LI TDVAARGLD+ + +V Y P S YVHR+GRT R G G +LLF+ E +L+
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358
Query: 774 ELQNR-RIRIEEIKL 787
++ ++ I E++L
Sbjct: 359 NIERTMKLTIPEVEL 373
Score = 102 (41.0 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 189 TLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ-FQSVLLSATLTPAVQRLAG 247
TL SK+ LVLDEAD +L G+ D+ E + Q P+ Q+ L SAT+ A++R+
Sbjct: 144 TLDLSKLSGLVLDEADEMLRMGFIEDV----ETIMAQIPEGHQTALFSATMPEAIRRITR 199
Query: 248 MTLQNPIQI 256
++ P ++
Sbjct: 200 RFMKEPQEV 208
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 421 (153.3 bits), Expect = 7.5e-37, P = 7.5e-37
Identities = 127/393 (32%), Positives = 201/393 (51%)
Query: 396 PGIHPFMKKNLNEGMNIT-------QVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAI 448
P ++ F +L + +N+ + T VQ+ +I +L D++ +QTGSGKT A+
Sbjct: 148 PPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCF 207
Query: 449 PIIQ---KLQEM-RPKISRKDGIYAVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTG 503
PII K Q + RP+ SR +AVI+ PTRELA Q + K ++ +V ++ G
Sbjct: 208 PIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAY--G 265
Query: 504 GEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDI 563
G + + + +G ILVATPGRL D + + + L LDEADR+LD G+E I
Sbjct: 266 GTPIHQQLRELERGCDILVATPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFEPQI 324
Query: 564 AEFLEILKKQ-KPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIP 622
+ +E + + Q++L SAT +QRLA + N I + + ++TD +
Sbjct: 325 RKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGR---VGSSTDLI--- 378
Query: 623 DSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLG 682
+ + F+ K L + Q +D++S LVF+ T+ AD L +
Sbjct: 379 -TQRVEFVQESDKRS--HLMDLL--HAQRETQDKQSLTLVFVETKRGADTLENWLC--MN 431
Query: 683 ENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSST 742
E A +HG +Q ER ++F++ ++ +L+ TDVAARGLD+P V +V + P+
Sbjct: 432 EFPAT-SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 490
Query: 743 DYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL 775
DYVHR+GRT R G G + F + +L L
Sbjct: 491 DYVHRIGRTGRAGKSGIATAFFNENNAQLARSL 523
Score = 226 (84.6 bits), Expect = 4.6e-15, P = 4.6e-15
Identities = 66/176 (37%), Positives = 98/176 (55%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQ---KLQEM-RPKISRKDGIYAVI 62
T VQ+ +I +L D++ +QTGSGKT A+ PII K Q + RP+ SR +AVI
Sbjct: 175 TPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVI 234
Query: 63 ILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
+ PTRELA Q + K ++ +V ++ GG + + + +G ILVATPGRL D
Sbjct: 235 LSPTRELACQIHDEAKKFSYQTGVKVVVAY--GGTPIHQQLRELERGCDILVATPGRLND 292
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQ-KPQFQSILLSAT 176
+ + + L LDEADR+LD G+E I + +E + + Q++L SAT
Sbjct: 293 LLERAR-VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSAT 347
>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
symbol:PFE0215w "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 219 (82.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 50/145 (34%), Positives = 89/145 (61%)
Query: 469 AVIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 527
++++L PTREL+ Q F ++ + + + + S + GGE ++ ++RKGI IL TPGR
Sbjct: 259 SILVLEPTRELSKQVENTFKEISQFYNFNIMS-IYGGESYTYQENKLRKGIDILTGTPGR 317
Query: 528 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587
++DH + + L ++++VLDEAD +L+ G+ DI L + ++ Q +L SAT T
Sbjct: 318 IIDHIEK-KNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQV--LLYSAT-T 373
Query: 588 PA-VQRLAGMTLQNPIQIDAADSTD 611
P+ ++ ++ L+NP ID DS++
Sbjct: 374 PSWIKDISSKYLKNPFCIDVVDSSN 398
Score = 209 (78.6 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 64/194 (32%), Positives = 104/194 (53%)
Query: 578 QSILLSATLTPA-VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636
Q +L SAT TP+ ++ ++ L+NP ID DS+ N T + ++K + + K
Sbjct: 365 QVLLYSAT-TPSWIKDISSKYLKNPFCIDVVDSS---NKTAKNIKHIAIKTPYDI---KE 417
Query: 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696
+ + L IL K ++++F T+ AD L S ++++F LHG+++Q
Sbjct: 418 KALLLEDIILVKSNG------GQVIIFTRTKLEADI---LCSEGSFKSLSFAVLHGNIAQ 468
Query: 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756
S R + FR +LI TD+A+RGLD+ VD ++Q P+ S Y+HR GRT R
Sbjct: 469 STREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYIHRAGRTGRANK 528
Query: 757 EGSSLLFLIPSEVK 770
+G+SL+ L +E K
Sbjct: 529 KGTSLV-LYSNEDK 541
Score = 194 (73.4 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 47/136 (34%), Positives = 81/136 (59%)
Query: 60 AVIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
++++L PTREL+ Q F ++ + + + + S + GGE ++ ++RKGI IL TPGR
Sbjct: 259 SILVLEPTRELSKQVENTFKEISQFYNFNIMS-IYGGESYTYQENKLRKGIDILTGTPGR 317
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
++DH + + L ++++VLDEAD +L+ G+ DI L + ++ Q +L SAT T
Sbjct: 318 IIDHIEK-KNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQV--LLYSAT-T 373
Query: 179 PATCWCKHTETLKFSK 194
P+ W K + K+ K
Sbjct: 374 PS--WIKDISS-KYLK 386
Score = 132 (51.5 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
L I +T +Q S +PI +G D++ RS+TGSGKTLA+A+P+++KL +M+
Sbjct: 157 LENKKGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMK 209
Score = 131 (51.2 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 23/47 (48%), Positives = 37/47 (78%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 49
I +T +Q S +PI +G D++ RS+TGSGKTLA+A+P+++KL +M+
Sbjct: 163 IKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMK 209
Score = 109 (43.4 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA-VQRLA 246
+ L ++++VLDEAD +L+ G+ DI L + ++ Q VLL + TP+ ++ ++
Sbjct: 325 KNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQ---VLLYSATTPSWIKDIS 381
Query: 247 GMTLQNPIQIDAADSTD 263
L+NP ID DS++
Sbjct: 382 SKYLKNPFCIDVVDSSN 398
>UNIPROTKB|Q8I457 [details] [associations]
symbol:PFE0215w "ATP-dependent helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 219 (82.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 50/145 (34%), Positives = 89/145 (61%)
Query: 469 AVIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 527
++++L PTREL+ Q F ++ + + + + S + GGE ++ ++RKGI IL TPGR
Sbjct: 259 SILVLEPTRELSKQVENTFKEISQFYNFNIMS-IYGGESYTYQENKLRKGIDILTGTPGR 317
Query: 528 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 587
++DH + + L ++++VLDEAD +L+ G+ DI L + ++ Q +L SAT T
Sbjct: 318 IIDHIEK-KNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQV--LLYSAT-T 373
Query: 588 PA-VQRLAGMTLQNPIQIDAADSTD 611
P+ ++ ++ L+NP ID DS++
Sbjct: 374 PSWIKDISSKYLKNPFCIDVVDSSN 398
Score = 209 (78.6 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 64/194 (32%), Positives = 104/194 (53%)
Query: 578 QSILLSATLTPA-VQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKL 636
Q +L SAT TP+ ++ ++ L+NP ID DS+ N T + ++K + + K
Sbjct: 365 QVLLYSAT-TPSWIKDISSKYLKNPFCIDVVDSS---NKTAKNIKHIAIKTPYDI---KE 417
Query: 637 RLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQ 696
+ + L IL K ++++F T+ AD L S ++++F LHG+++Q
Sbjct: 418 KALLLEDIILVKSNG------GQVIIFTRTKLEADI---LCSEGSFKSLSFAVLHGNIAQ 468
Query: 697 SERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGH 756
S R + FR +LI TD+A+RGLD+ VD ++Q P+ S Y+HR GRT R
Sbjct: 469 STREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYIHRAGRTGRANK 528
Query: 757 EGSSLLFLIPSEVK 770
+G+SL+ L +E K
Sbjct: 529 KGTSLV-LYSNEDK 541
Score = 194 (73.4 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 47/136 (34%), Positives = 81/136 (59%)
Query: 60 AVIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGR 118
++++L PTREL+ Q F ++ + + + + S + GGE ++ ++RKGI IL TPGR
Sbjct: 259 SILVLEPTRELSKQVENTFKEISQFYNFNIMS-IYGGESYTYQENKLRKGIDILTGTPGR 317
Query: 119 LLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
++DH + + L ++++VLDEAD +L+ G+ DI L + ++ Q +L SAT T
Sbjct: 318 IIDHIEK-KNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQV--LLYSAT-T 373
Query: 179 PATCWCKHTETLKFSK 194
P+ W K + K+ K
Sbjct: 374 PS--WIKDISS-KYLK 386
Score = 132 (51.5 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 406 LNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 458
L I +T +Q S +PI +G D++ RS+TGSGKTLA+A+P+++KL +M+
Sbjct: 157 LENKKGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMK 209
Score = 131 (51.2 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 23/47 (48%), Positives = 37/47 (78%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMR 49
I +T +Q S +PI +G D++ RS+TGSGKTLA+A+P+++KL +M+
Sbjct: 163 IKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMK 209
Score = 109 (43.4 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 188 ETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA-VQRLA 246
+ L ++++VLDEAD +L+ G+ DI L + ++ Q VLL + TP+ ++ ++
Sbjct: 325 KNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQ---VLLYSATTPSWIKDIS 381
Query: 247 GMTLQNPIQIDAADSTD 263
L+NP ID DS++
Sbjct: 382 SKYLKNPFCIDVVDSSN 398
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 298 (110.0 bits), Expect = 8.7e-37, Sum P(2) = 8.7e-37
Identities = 69/202 (34%), Positives = 118/202 (58%)
Query: 405 NLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRK 464
N+ + ++ T++Q +I I+ G DV+ ++TGSGKTLA+ +P+ + + + +P++
Sbjct: 317 NVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILD-QPELEEG 375
Query: 465 DGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
DG AVI+ PTRELA+QT + K K V + GG + + A +++G I+V T
Sbjct: 376 DGPIAVILAPTRELAMQTYKEANKFAKPLGLKV-ACTYGGVGISEQIADLKRGAEIVVCT 434
Query: 525 PGRLLD--HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILL 582
PGR++D + +V +LVLDEADR+ D+G+E I ++++ +P Q++L
Sbjct: 435 PGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQI---MKVVNNIRPDKQTVLF 491
Query: 583 SATLTPAVQRLAGMTLQNPIQI 604
SAT ++ LA L P++I
Sbjct: 492 SATFPRHMEALARKVLDKPVEI 513
Score = 274 (101.5 bits), Expect = 3.6e-34, Sum P(2) = 3.6e-34
Identities = 63/172 (36%), Positives = 104/172 (60%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPT 66
T++Q +I I+ G DV+ ++TGSGKTLA+ +P+ + + + +P++ DG AVI+ PT
Sbjct: 328 TSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILD-QPELEEGDGPIAVILAPT 386
Query: 67 RELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD--HCK 124
RELA+QT + K K V + GG + + A +++G I+V TPGR++D
Sbjct: 387 RELAMQTYKEANKFAKPLGLKV-ACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAAN 445
Query: 125 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +V +LVLDEADR+ D+G+E I ++++ +P Q++L SAT
Sbjct: 446 SGKVTNLRRVTYLVLDEADRMFDKGFEPQI---MKVVNNIRPDKQTVLFSAT 494
Score = 188 (71.2 bits), Expect = 8.7e-37, Sum P(2) = 8.7e-37
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 656 EESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLI 715
EE +VF+ Q+ AD + L ++A LHG + Q +R F++ VL+
Sbjct: 550 EEGSSIVFVDKQEKADDIVDQLMRTGYNSVA--PLHGGIDQHDRDSSIADFKTGVIKVLV 607
Query: 716 CTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS-EVKLVEE 774
T VAARGLD+ + +V Y P+ DYVHRVGRT R G +G + F++P + K+ E
Sbjct: 608 ATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGE 667
Query: 775 L 775
+
Sbjct: 668 I 668
Score = 115 (45.5 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 194 KVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNP 253
+V +LVLDEADR+ D+G+E I ++++ +P Q+VL SAT ++ LA L P
Sbjct: 454 RVTYLVLDEADRMFDKGFEPQI---MKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKP 510
Query: 254 IQI 256
++I
Sbjct: 511 VEI 513
Score = 69 (29.3 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 39/180 (21%), Positives = 72/180 (40%)
Query: 217 EFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDS 276
+ ++++ +P Q+VL SAT ++ LA L P++I S+V D
Sbjct: 474 QIMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGK--------SVVCSD- 524
Query: 277 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMAD-YHTELLSTXXXX 335
+ Q+ ++ + + L +LG EE +VF+ Q+ AD +L+ T
Sbjct: 525 ITQNAVICAEHQKFLKLLE-LLGMYY-----EEGSSIVFVDKQEKADDIVDQLMRTGYNS 578
Query: 336 XXXXEYNIDPDNYEIPKKTEVKSGPISSLFQNNPDIPNVPTRRLKPVSEALFAPTSYEEF 395
ID + + + K+G I L + + + L V P YE++
Sbjct: 579 VAPLHGGIDQHDRD-SSIADFKTGVIKVLVATSVAARGLDVKNLILVVN-YDCPNHYEDY 636
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 266 (98.7 bits), Expect = 9.1e-37, Sum P(2) = 9.1e-37
Identities = 77/251 (30%), Positives = 130/251 (51%)
Query: 363 SLFQNNPDIPNVPT------RRLKPVS-EALFAPTSYEEFPGIH-PFMKKNLNEGMNITQ 414
+ +Q NPD+ RR K ++ + P +F + P ++ N T
Sbjct: 59 NFYQENPDVARRSAQEVEHYRRSKEITVKGRDGPKPIVKFHEANFPKYVMDVITKQNWTD 118
Query: 415 VTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILP 474
T +Q L G D++ +QTGSGKTL+Y +P I + +P + DG +++ P
Sbjct: 119 PTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINH-QPFLEHGDGPICLVLAP 177
Query: 475 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 534
TRELA Q ++ + K+ + I + + GG + + +G+ I +ATPGRL+D +
Sbjct: 178 TRELAQQVQQVAAEYGKA-SRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA 236
Query: 535 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLA 594
+T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT V++LA
Sbjct: 237 GKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEVRQLA 292
Query: 595 GMTLQNPIQID 605
L+ IQI+
Sbjct: 293 EDFLKEYIQIN 303
Score = 246 (91.7 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 60/175 (34%), Positives = 99/175 (56%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
N T T +Q L G D++ +QTGSGKTL+Y +P I + +P + DG +
Sbjct: 115 NWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINH-QPFLEHGDGPICL 173
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PTRELA Q ++ + K+ + I + + GG + + +G+ I +ATPGRL+D
Sbjct: 174 VLAPTRELAQQVQQVAAEYGKA-SRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID 232
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
+ +T + +LVLDEADR+LD G+E I + ++ ++ P Q+++ SAT
Sbjct: 233 FLEAGKT-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSAT 283
Score = 214 (80.4 bits), Expect = 9.1e-37, Sum P(2) = 9.1e-37
Identities = 60/208 (28%), Positives = 108/208 (51%)
Query: 568 EILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQ 627
+I+ + +P Q+++ SAT V++LA L+ IQI+ + + + L I D
Sbjct: 266 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVG-ALQLSANHNILQIVDVCND 324
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+ +L+ L I+ ++E+K ++F+ T+ D +L + +
Sbjct: 325 G----EKEDKLIRLLEEIMS-------EKENKTIIFVETKRRCD---DLTRRMRRDGWPA 370
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
+HG +Q ER V F+ K+ +LI TDVA+RGLD+ V +++ + P++S DY+HR
Sbjct: 371 MGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHR 430
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEEL 775
+GRTAR G++ F P+ +K +L
Sbjct: 431 IGRTARSQKTGTAYTFFTPNNMKQAHDL 458
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 276 (102.2 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 69/204 (33%), Positives = 113/204 (55%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
M + T +Q +I L DV+ ++QTG+GKT A+ IP+++K+ P I A
Sbjct: 21 MGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQ------A 74
Query: 470 VIILPTRELALQTLEIFTKLCKSF-TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 528
++I PTRELA+Q E K+ + ++P + GG+ + + ++K I+V TPGRL
Sbjct: 75 IVIAPTRELAIQVSEELYKIGQDKRARVLPIY--GGQDIGRQIRALKKNPHIIVGTPGRL 132
Query: 529 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588
LDH T++ V +VLDEAD +L+ G+ DI IL + Q++L SAT+
Sbjct: 133 LDHINR-RTMRLQTVNTVVLDEADEMLNMGFIEDIES---ILSNVPAEHQTLLFSATMPA 188
Query: 589 AVQRLAGMTLQNP--IQIDAADST 610
++R+A + NP +++ A + T
Sbjct: 189 PIKRIAERFMTNPEHVKVKAKEMT 212
Score = 253 (94.1 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 65/181 (35%), Positives = 101/181 (55%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + T +Q +I L DV+ ++QTG+GKT A+ IP+++K+ P I A
Sbjct: 21 MGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQ------A 74
Query: 61 VIILPTRELALQTLEIFTKLCKSF-TWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
++I PTRELA+Q E K+ + ++P + GG+ + + ++K I+V TPGRL
Sbjct: 75 IVIAPTRELAIQVSEELYKIGQDKRARVLPIY--GGQDIGRQIRALKKNPHIIVGTPGRL 132
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
LDH T++ V +VLDEAD +L+ G+ DI IL + Q++L SAT+ P
Sbjct: 133 LDHINR-RTMRLQTVNTVVLDEADEMLNMGFIEDIES---ILSNVPAEHQTLLFSATM-P 187
Query: 180 A 180
A
Sbjct: 188 A 188
Score = 188 (71.2 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 50/174 (28%), Positives = 88/174 (50%)
Query: 661 LVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVA 720
+VF T+ D TE L+ + G +HG ++Q++R + F+ VL+ TDVA
Sbjct: 245 IVFGRTKRRVDELTEALN-LRGYTAE--GIHGDLTQAKRMVALRKFKQGAIEVLVATDVA 301
Query: 721 ARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVEELQN 777
ARGLD+ V + + P YVHR+GRT R G G ++ F+ P E ++ +E+
Sbjct: 302 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTK 361
Query: 778 RRI-RIEEIKLKDCLQNLLSVKMEGDLSRLADGNVE---TAATALQMSFESAVL 827
R++ R++ L + ++ V ++ + + + N+ TAA L +S +
Sbjct: 362 RKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHDSVTV 415
Score = 105 (42.0 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 37/126 (29%), Positives = 62/126 (49%)
Query: 140 DEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCK-HTETLKFSKVEHL 198
D+ R+L +DI + LKK P I++ TP + T++ V +
Sbjct: 97 DKRARVLPIYGGQDIGRQIRALKKN-PH---IIVG---TPGRLLDHINRRTMRLQTVNTV 149
Query: 199 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNP--IQI 256
VLDEAD +L+ G+ DI IL + Q++L SAT+ ++R+A + NP +++
Sbjct: 150 VLDEADEMLNMGFIEDIES---ILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKV 206
Query: 257 DAADST 262
A + T
Sbjct: 207 KAKEMT 212
Score = 48 (22.0 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQ 603
FQ LS+ LT A++R+ G PIQ
Sbjct: 5 FQDFQLSSDLTKAIKRM-GFEEATPIQ 30
Score = 47 (21.6 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 229 FQSVLLSATLTPAVQRLAGMTLQNPIQ 255
FQ LS+ LT A++R+ G PIQ
Sbjct: 5 FQDFQLSSDLTKAIKRM-GFEEATPIQ 30
Score = 39 (18.8 bits), Expect = 6.7e-11, Sum P(3) = 6.7e-11
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 368 NPDIPNV------PTRRLK-PVSEALF 387
NP+ PN+ PTR L VSE L+
Sbjct: 66 NPESPNIQAIVIAPTRELAIQVSEELY 92
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 292 (107.8 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 80/243 (32%), Positives = 128/243 (52%)
Query: 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYA 469
I Q T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y
Sbjct: 197 IQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 256
Query: 470 VIILPTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
+II P+RELA QT +E + +L + S + + GG +K + I+ G+ ++VAT
Sbjct: 257 LIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVAT 316
Query: 525 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584
PGRL+D + + + +L LDEADR++D G+E DI K Q+ Q++L SA
Sbjct: 317 PGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSA 372
Query: 585 TLTPAVQRLAGMTLQNPIQIDA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLR 637
T+ +Q A L PI I+ A + + + + + K +++ TPP +
Sbjct: 373 TMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLLECLQKTPPPVL 432
Query: 638 LVA 640
+ A
Sbjct: 433 IFA 435
Score = 267 (99.0 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 68/182 (37%), Positives = 104/182 (57%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYA 60
I Q T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y
Sbjct: 197 IQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 256
Query: 61 VIILPTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 115
+II P+RELA QT +E + +L + S + + GG +K + I+ G+ ++VAT
Sbjct: 257 LIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVAT 316
Query: 116 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175
PGRL+D + + + +L LDEADR++D G+E DI K Q+ Q++L SA
Sbjct: 317 PGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSA 372
Query: 176 TL 177
T+
Sbjct: 373 TM 374
Score = 185 (70.2 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 660 MLVFMATQ-DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
+L+F + D+ H LL + E +A +HG Q ERT+ + FR K VL+ TD
Sbjct: 431 VLIFAEKKADVDAIHEYLLLKGV-EAVA---IHGGKDQEERTKAIEAFRDGKKDVLVATD 486
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
VA++GLD P + ++ Y P +YVHR+GRT R G+ G + F+
Sbjct: 487 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 532
Score = 112 (44.5 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
Identities = 31/103 (30%), Positives = 51/103 (49%)
Query: 197 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+L LDEADR++D G+E DI K Q+ Q++L SAT+ +Q A L PI I
Sbjct: 336 YLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPKKIQNFAKSALVKPITI 392
Query: 257 DA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 292
+ A + + + + + K +++ TPP + + A
Sbjct: 393 NVGRAGAASLDVVQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 435
Score = 41 (19.5 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 199 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQ 255
+LD+ + ++ R + + LK+++ +SV L + G+T +PI+
Sbjct: 83 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 139
Score = 40 (19.1 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+LD+ + ++ R + + LK+++ +S+ L + G+T +PI+
Sbjct: 83 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 139
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 423 (154.0 bits), Expect = 2.5e-36, P = 2.5e-36
Identities = 127/407 (31%), Positives = 198/407 (48%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM---------RPKISRKDG 466
T VQ+ +I I++G D++ +QTGSGKT A+ +PI+ ++ E+ R RK
Sbjct: 319 TPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQY 378
Query: 467 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 526
+++ PTRELA Q E K + + P+ L GG + + +G ++VATPG
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYR-SRMRPAVLYGGNNTSEQMRELDRGCHLIVATPG 437
Query: 527 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSAT 585
RL D + + + LVLDEADR+LD G+E I +E L Q Q+++ SAT
Sbjct: 438 RLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSAT 496
Query: 586 LTPAVQRLAGMTLQNPI--QIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR-LVALA 642
+Q LA L N I + ST N T +++ ++ P K L+ L
Sbjct: 497 FPKQIQELASDFLSNYIFLAVGRVGSTS-ENITQTIL--------WVYEPDKRSYLLDLL 547
Query: 643 SFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEV 702
S I ++S L+F+ T+ AD E L N +HG +Q ER E
Sbjct: 548 SSIR---DGPEYTKDSLTLIFVETKKGADSLEEFLYQC---NHPVTSIHGDRTQKEREEA 601
Query: 703 FKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLL 762
+ FRS +L+ T VAARGLD+P V ++ + PS +YVHR+GRT R+G+ G +
Sbjct: 602 LRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATS 661
Query: 763 FLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSRLADG 809
F + +L I ++ ++ ++++ S + G R G
Sbjct: 662 FFNEKNRNICSDLLELLIETKQ-EIPSFMEDMSSDRGHGGAKRAGRG 707
Score = 235 (87.8 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 63/180 (35%), Positives = 96/180 (53%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEM---------RPKISRKDG 57
T VQ+ +I I++G D++ +QTGSGKT A+ +PI+ ++ E+ R RK
Sbjct: 319 TPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQY 378
Query: 58 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 117
+++ PTRELA Q E K + + P+ L GG + + +G ++VATPG
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYR-SRMRPAVLYGGNNTSEQMRELDRGCHLIVATPG 437
Query: 118 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSAT 176
RL D + + + LVLDEADR+LD G+E I +E L Q Q+++ SAT
Sbjct: 438 RLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSAT 496
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 306 (112.8 bits), Expect = 8.3e-24, P = 8.3e-24
Identities = 78/240 (32%), Positives = 130/240 (54%)
Query: 397 GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQE 456
GI P + K L+ I ++ +Q+ ++P ++G D++ R++TG+GKTLA+ IPII K+ +
Sbjct: 110 GISPEIVKALSS-KGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
Query: 457 MRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK 516
K R +++ PTRELA Q + F + S I L GG + + ++
Sbjct: 169 YNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC---LYGGTPIGQQMRQLDY 225
Query: 517 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 576
G+ + V TPGR++D K L S+V+ +VLDEAD++L G+ D+ LE L +++
Sbjct: 226 GVDVAVGTPGRVIDLMKRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR-- 282
Query: 577 FQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTD---IHNTTDSLVIPDSLKQHFIVTP 633
QS++ SAT+ ++ L L NP+ +D +D T +I DS + I+ P
Sbjct: 283 -QSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGP 341
Score = 261 (96.9 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 61/175 (34%), Positives = 103/175 (58%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 62
I ++ +Q+ ++P ++G D++ R++TG+GKTLA+ IPII K+ + K R ++
Sbjct: 124 IEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLV 183
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
+ PTRELA Q + F + S I L GG + + ++ G+ + V TPGR++D
Sbjct: 184 LAPTRELARQVEKEFRESAPSLDTIC---LYGGTPIGQQMRQLDYGVDVAVGTPGRVIDL 240
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
K L S+V+ +VLDEAD++L G+ D+ LE L +++ QS++ SAT+
Sbjct: 241 MKRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR---QSMMFSATM 291
Score = 215 (80.7 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 72/238 (30%), Positives = 120/238 (50%)
Query: 556 DQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNT 615
DQ + AE +EI+ ++ P+ + ++ + P+ R +T + ++ + D+
Sbjct: 260 DQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIR--SLTKK---YLNNPLTVDLVGD 314
Query: 616 TDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEES-KMLVFMATQDMADYHT 674
+D + D + + I+ R AS I+G V E + K +VF T+ AD
Sbjct: 315 SDQK-LADGITTYSIIADSYGR----AS-IIGPL--VTEHAKGGKCIVFTQTKRDADR-- 364
Query: 675 ELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQ 734
LS L + LHG +SQS+R FR +L+ TDVAARGLD+P VD I+
Sbjct: 365 --LSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIH 422
Query: 735 YTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE---VKLVE-ELQNRRIRIEEIKLK 788
Y P+++ +VHR GRT R G +GS++L + VK++E E+ +R + I ++
Sbjct: 423 YELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480
Score = 123 (48.4 bits), Expect = 0.00068, P = 0.00068
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
L S+V+ +VLDEAD++L G+ D+ LE L +++ QS++ SAT+ ++ L
Sbjct: 246 LNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR---QSMMFSATMPSWIRSLTKKY 302
Query: 250 LQNPIQIDAADSTD---IHNTTDSLVIPDSLKQHFIVTP 285
L NP+ +D +D T +I DS + I+ P
Sbjct: 303 LNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGP 341
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 425 (154.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 125/381 (32%), Positives = 192/381 (50%)
Query: 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPK 460
MKKN+ T+ T +QQ ++ I G D++ +QTGSGKT A+ +PI+ +L E
Sbjct: 563 MKKNVAHA-GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLN 621
Query: 461 ISRKDGIY--AVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKG 517
+ + G Y +I+ PTREL Q K ++ I P + GG + K +I KG
Sbjct: 622 TAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVY--GGLAVGYNKGQIEKG 679
Query: 518 ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEFL--EILKKQK 574
+I+V T GR+ C+ T+K K VLDEADR++D G+ DI + E + K++
Sbjct: 680 ATIIVGTVGRIKHFCEEG-TIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKE 738
Query: 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP 634
+ Q+++ SAT +VQ A L+ + A D N V+ + K
Sbjct: 739 NR-QTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAAN---KCVLQEFEKCDRSEKKD 794
Query: 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSM 694
KL + + +E K +VF++ + MAD +LS+ + +HG+
Sbjct: 795 KLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSA---QVPAITIHGAR 851
Query: 695 SQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754
Q ER+E + FR+ VLI T VA RGLD+ VD ++ Y P + DY+HR+GRT RV
Sbjct: 852 EQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRV 911
Query: 755 GHEGSSLLFLIPSEVKLVEEL 775
G+ G + F I + L+ EL
Sbjct: 912 GNAGRATSF-ISEDCNLLSEL 931
Score = 229 (85.7 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 89/310 (28%), Positives = 146/310 (47%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIY--A 60
T+ T +QQ ++ I G D++ +QTGSGKT A+ +PI+ +L E + + G Y
Sbjct: 573 TKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRC 632
Query: 61 VIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
+I+ PTREL Q K ++ I P + GG + K +I KG +I+V T GR+
Sbjct: 633 IILTPTRELTDQIYNEGRKFAYQTMMEIRPVY--GGLAVGYNKGQIEKGATIIVGTVGRI 690
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEFL--EILKKQKPQFQSILLSAT 176
C+ T+K K VLDEADR++D G+ DI + E + K++ + Q+++ SAT
Sbjct: 691 KHFCEEG-TIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENR-QTLMFSAT 748
Query: 177 LTPATCWC--KHTET----LKFSKV---EHLVLDEADRILDQGYERD-IAEFLEI-LKKQ 225
+ H + L K+ VL E ++ D+ ++D + E L I +
Sbjct: 749 FPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKC-DRSEKKDKLLEILGIDIDSY 807
Query: 226 KPQFQS-VLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT 284
+ S V T+ QR TL + + + IH + ++L+Q +
Sbjct: 808 TTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGS 867
Query: 285 PPKLRLVALA 294
P L A+A
Sbjct: 868 KPVLIATAVA 877
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 425 (154.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 125/381 (32%), Positives = 192/381 (50%)
Query: 402 MKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPK 460
MKKN+ T+ T +QQ ++ I G D++ +QTGSGKT A+ +PI+ +L E
Sbjct: 563 MKKNVAHA-GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLN 621
Query: 461 ISRKDGIY--AVIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKG 517
+ + G Y +I+ PTREL Q K ++ I P + GG + K +I KG
Sbjct: 622 TAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVY--GGLAVGYNKGQIEKG 679
Query: 518 ISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEFL--EILKKQK 574
+I+V T GR+ C+ T+K K VLDEADR++D G+ DI + E + K++
Sbjct: 680 ATIIVGTVGRIKHFCEEG-TIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKE 738
Query: 575 PQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPP 634
+ Q+++ SAT +VQ A L+ + A D N V+ + K
Sbjct: 739 NR-QTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAAN---KCVLQEFEKCDRSEKKD 794
Query: 635 KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSM 694
KL + + +E K +VF++ + MAD +LS+ + +HG+
Sbjct: 795 KLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSA---QVPAITIHGAR 851
Query: 695 SQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARV 754
Q ER+E + FR+ VLI T VA RGLD+ VD ++ Y P + DY+HR+GRT RV
Sbjct: 852 EQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRV 911
Query: 755 GHEGSSLLFLIPSEVKLVEEL 775
G+ G + F I + L+ EL
Sbjct: 912 GNAGRATSF-ISEDCNLLSEL 931
Score = 229 (85.7 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 89/310 (28%), Positives = 146/310 (47%)
Query: 4 TQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL-QEMRPKISRKDGIY--A 60
T+ T +QQ ++ I G D++ +QTGSGKT A+ +PI+ +L E + + G Y
Sbjct: 573 TKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRC 632
Query: 61 VIILPTRELALQTLEIFTKLC-KSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
+I+ PTREL Q K ++ I P + GG + K +I KG +I+V T GR+
Sbjct: 633 IILTPTRELTDQIYNEGRKFAYQTMMEIRPVY--GGLAVGYNKGQIEKGATIIVGTVGRI 690
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILD-QGYERDIAEFL--EILKKQKPQFQSILLSAT 176
C+ T+K K VLDEADR++D G+ DI + E + K++ + Q+++ SAT
Sbjct: 691 KHFCEEG-TIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENR-QTLMFSAT 748
Query: 177 LTPATCWC--KHTET----LKFSKV---EHLVLDEADRILDQGYERD-IAEFLEI-LKKQ 225
+ H + L K+ VL E ++ D+ ++D + E L I +
Sbjct: 749 FPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKC-DRSEKKDKLLEILGIDIDSY 807
Query: 226 KPQFQS-VLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVT 284
+ S V T+ QR TL + + + IH + ++L+Q +
Sbjct: 808 TTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGS 867
Query: 285 PPKLRLVALA 294
P L A+A
Sbjct: 868 KPVLIATAVA 877
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 290 (107.1 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 80/243 (32%), Positives = 127/243 (52%)
Query: 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYA 469
I T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y
Sbjct: 201 ILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 260
Query: 470 VIILPTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
+II P+RELA QT LE + +L + S + + GG +K + IR G+ ++VAT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 525 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584
PGRL+D + + + +L LDEADR++D G+E DI K Q+ Q++L SA
Sbjct: 321 PGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSA 376
Query: 585 TLTPAVQRLAGMTLQNPIQIDA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLR 637
T+ +Q A L P+ I+ A + + + + + K +++ TPP +
Sbjct: 377 TMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 436
Query: 638 LVA 640
+ A
Sbjct: 437 IFA 439
Score = 267 (99.0 bits), Expect = 8.0e-34, Sum P(2) = 8.0e-34
Identities = 69/182 (37%), Positives = 103/182 (56%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYA 60
I T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y
Sbjct: 201 ILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 260
Query: 61 VIILPTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 115
+II P+RELA QT LE + +L + S + + GG +K + IR G+ ++VAT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 116 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175
PGRL+D + + + +L LDEADR++D G+E DI K Q+ Q++L SA
Sbjct: 321 PGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSA 376
Query: 176 TL 177
T+
Sbjct: 377 TM 378
Score = 185 (70.2 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 660 MLVFMATQ-DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
+L+F + D+ H LL + E +A +HG Q ERT+ + FR K VL+ TD
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGV-EAVA---IHGGKDQEERTKAIEAFREGKKDVLVATD 490
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
VA++GLD P + ++ Y P +YVHR+GRT R G+ G + F+
Sbjct: 491 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
Score = 110 (43.8 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 197 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+L LDEADR++D G+E DI K Q+ Q++L SAT+ +Q A L P+ I
Sbjct: 340 YLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPKKIQNFAKSALVKPVTI 396
Query: 257 DA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 292
+ A + + + + + K +++ TPP + + A
Sbjct: 397 NVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 439
Score = 41 (19.5 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 199 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQ 255
+LD+ + ++ R + + LK+++ +SV L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
Score = 40 (19.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+LD+ + ++ R + + LK+++ +S+ L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 290 (107.1 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 80/243 (32%), Positives = 127/243 (52%)
Query: 412 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYA 469
I T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y
Sbjct: 201 ILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 260
Query: 470 VIILPTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 524
+II P+RELA QT LE + +L + S + + GG +K + IR G+ ++VAT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 525 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 584
PGRL+D + + + +L LDEADR++D G+E DI K Q+ Q++L SA
Sbjct: 321 PGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSA 376
Query: 585 TLTPAVQRLAGMTLQNPIQIDA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLR 637
T+ +Q A L P+ I+ A + + + + + K +++ TPP +
Sbjct: 377 TMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 436
Query: 638 LVA 640
+ A
Sbjct: 437 IFA 439
Score = 267 (99.0 bits), Expect = 8.0e-34, Sum P(2) = 8.0e-34
Identities = 69/182 (37%), Positives = 103/182 (56%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYA 60
I T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y
Sbjct: 201 ILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYG 260
Query: 61 VIILPTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVAT 115
+II P+RELA QT LE + +L + S + + GG +K + IR G+ ++VAT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 116 PGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSA 175
PGRL+D + + + +L LDEADR++D G+E DI K Q+ Q++L SA
Sbjct: 321 PGRLMDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSA 376
Query: 176 TL 177
T+
Sbjct: 377 TM 378
Score = 185 (70.2 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 660 MLVFMATQ-DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
+L+F + D+ H LL + E +A +HG Q ERT+ + FR K VL+ TD
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGV-EAVA---IHGGKDQEERTKAIEAFREGKKDVLVATD 490
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
VA++GLD P + ++ Y P +YVHR+GRT R G+ G + F+
Sbjct: 491 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
Score = 110 (43.8 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 197 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+L LDEADR++D G+E DI K Q+ Q++L SAT+ +Q A L P+ I
Sbjct: 340 YLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPKKIQNFAKSALVKPVTI 396
Query: 257 DA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 292
+ A + + + + + K +++ TPP + + A
Sbjct: 397 NVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 439
Score = 41 (19.5 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 199 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQ 255
+LD+ + ++ R + + LK+++ +SV L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
Score = 40 (19.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+LD+ + ++ R + + LK+++ +S+ L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 289 (106.8 bits), Expect = 4.2e-36, Sum P(3) = 4.2e-36
Identities = 79/239 (33%), Positives = 126/239 (52%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYAVIIL 473
T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y +II
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIIC 264
Query: 474 PTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 528
P+RELA QT LE + +L + S + + GG +K + IR G+ ++VATPGRL
Sbjct: 265 PSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRL 324
Query: 529 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588
+D + + + +L LDEADR++D G+E DI K Q+ Q++L SAT+
Sbjct: 325 MDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPK 380
Query: 589 AVQRLAGMTLQNPIQIDA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 640
+Q A L P+ I+ A + + + + + K +++ TPP + + A
Sbjct: 381 KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 439
Score = 266 (98.7 bits), Expect = 8.1e-34, Sum P(2) = 8.1e-34
Identities = 68/178 (38%), Positives = 102/178 (57%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYAVIIL 64
T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y +II
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIIC 264
Query: 65 PTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
P+RELA QT LE + +L + S + + GG +K + IR G+ ++VATPGRL
Sbjct: 265 PSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRL 324
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
+D + + + +L LDEADR++D G+E DI K Q+ Q++L SAT+
Sbjct: 325 MDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATM 378
Score = 186 (70.5 bits), Expect = 4.2e-36, Sum P(3) = 4.2e-36
Identities = 52/151 (34%), Positives = 79/151 (52%)
Query: 660 MLVFMATQ-DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
+L+F + D+ H LL + E +A +HG Q ERT+ + FR K VL+ TD
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGV-EAVA---IHGGKDQEERTKAIEAFREGKKDVLVATD 490
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR 778
VA++GLD P + ++ Y P +YVHR+GRT R G+ G + F+ + + V L +
Sbjct: 491 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESV--LMDL 548
Query: 779 RIRIEEIKLKDCLQNLLSVKMEGDLSRLADG 809
+ + E K K + +L V GD S L G
Sbjct: 549 KALLLEAKQK--VPPVLQVLHCGDESMLEIG 577
Score = 110 (43.8 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 197 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+L LDEADR++D G+E DI K Q+ Q++L SAT+ +Q A L P+ I
Sbjct: 340 YLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPKKIQNFAKSALVKPVTI 396
Query: 257 DA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 292
+ A + + + + + K +++ TPP + + A
Sbjct: 397 NVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 439
Score = 41 (19.5 bits), Expect = 4.2e-36, Sum P(3) = 4.2e-36
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 199 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQ 255
+LD+ + ++ R + + LK+++ +SV L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
Score = 40 (19.1 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+LD+ + ++ R + + LK+++ +S+ L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 399 (145.5 bits), Expect = 4.3e-36, P = 4.3e-36
Identities = 103/339 (30%), Positives = 171/339 (50%)
Query: 466 GIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATP 525
GI+ +++ PTRELA Q E F L K + + GG M ++ + + +++ATP
Sbjct: 70 GIFCLVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVAQALELSRKPHVVIATP 128
Query: 526 GRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585
GRL DH + + T K+ LV+DEADR+L+QG + IL + Q++L SAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQTLLFSAT 188
Query: 586 LTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFI 645
LT ++ L G+ P +A + + L Q +++ P K++ L I
Sbjct: 189 LTDTLKELQGLATNQPFFWEA--QAPVRTV-------EQLDQRYLLVPEKVKDAYLVHLI 239
Query: 646 LGKCQNVNEDEES-KMLVFMATQDMADYHTELLSTVLGE-NIAFFKLHGSMSQSERTEVF 703
QN ++ E +++F T ++L +L + N LH M Q ER
Sbjct: 240 ----QNFQDEHEDWSIIIFTNTCKTC----QILCMMLRKFNFPTVALHSMMKQKERFAAL 291
Query: 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763
F+S +LI TDVA+RGLD+P V ++ + P Y+HRVGRTAR G +G ++
Sbjct: 292 AKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITL 351
Query: 764 LIPSEVKLVEELQNR-RIRIEEIKLKDC--LQNLLSVKM 799
+ ++ LV ++ + + ++EE+ +++ LQ L V +
Sbjct: 352 VTQYDIHLVHAIEEQIKKQLEELSVEEAKVLQILTQVNV 390
Score = 310 (114.2 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 78/224 (34%), Positives = 119/224 (53%)
Query: 410 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 469
+ + Q T VQ I IL+G D L ++TGSGKT A+ +PI+QKL E P GI+
Sbjct: 20 LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE-DPY-----GIFC 73
Query: 470 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 529
+++ PTRELA Q E F L K + + GG M ++ + + +++ATPGRL
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVAQALELSRKPHVVIATPGRLA 132
Query: 530 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 589
DH + + T K+ LV+DEADR+L+QG + IL + Q++L SATLT
Sbjct: 133 DHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQTLLFSATLTDT 192
Query: 590 VQRLAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIV 631
++ L G+ P +A D L++P+ +K ++V
Sbjct: 193 LKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLV 236
Score = 279 (103.3 bits), Expect = 3.5e-21, P = 3.5e-21
Identities = 69/178 (38%), Positives = 100/178 (56%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + Q T VQ I IL+G D L ++TGSGKT A+ +PI+QKL E P GI+
Sbjct: 20 LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSE-DPY-----GIFC 73
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA Q E F L K + + GG M ++ + + +++ATPGRL
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVAQALELSRKPHVVIATPGRLA 132
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLT 178
DH + + T K+ LV+DEADR+L+QG + IL + Q++L SATLT
Sbjct: 133 DHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQTLLFSATLT 190
Score = 130 (50.8 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 50/178 (28%), Positives = 82/178 (46%)
Query: 108 GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 167
GI LV TP R L + + + +V L D I+ G + +A+ LE+ +KP
Sbjct: 70 GIFCLVLTPTRELAY----QIAEQFRVLGKPLGLKDCIIVGGMDM-VAQALEL--SRKPH 122
Query: 168 FQSILLSATLTPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP 227
++ AT + + T K+ LV+DEADR+L+QG + IL
Sbjct: 123 ----VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPT 178
Query: 228 QFQSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDS--LVIPDSLKQHFIV 283
+ Q++L SATLT ++ L G+ P +A D L++P+ +K ++V
Sbjct: 179 RRQTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLV 236
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 248 (92.4 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 67/216 (31%), Positives = 112/216 (51%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
TS+E GI + + + + + +QQ I+PIL+G DV+++SQ+G+GKT +A+
Sbjct: 17 TSFENI-GIDEGLLRGIY-AYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVG 74
Query: 450 IIQKLQEMRPKISRKDGIYAVIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508
+ ++R VIIL PTRELA QT ++ L + + GG+KM
Sbjct: 75 ALNC-------VNRNLNETQVIILSPTRELAEQTQKVCLALA-DYIHVTIYCCIGGKKMS 126
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ + G+ ++ TPGR+ H + LK ++ LV+DEAD +L++G++ + +
Sbjct: 127 DDIKALNNGVHVISGTPGRIY-HMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYR 185
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
L P Q IL SATL V + + P++I
Sbjct: 186 FLS---PNTQIILSSATLPQEVLEITNKFMHKPVKI 218
Score = 230 (86.0 bits), Expect = 7.7e-34, Sum P(2) = 7.7e-34
Identities = 59/172 (34%), Positives = 95/172 (55%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-P 65
+ +QQ I+PIL+G DV+++SQ+G+GKT +A+ + ++R VIIL P
Sbjct: 41 SAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNC-------VNRNLNETQVIILSP 93
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA QT ++ L + + GG+KM + + G+ ++ TPGR+ H +
Sbjct: 94 TRELAEQTQKVCLALA-DYIHVTIYCCIGGKKMSDDIKALNNGVHVISGTPGRIY-HMLN 151
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LK ++ LV+DEAD +L++G++ + + L P Q IL SATL
Sbjct: 152 LRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLS---PNTQIILSSATL 200
Score = 213 (80.0 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 46/131 (35%), Positives = 76/131 (58%)
Query: 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717
++ +VF TQ D+ T+ + L N K+H MSQSER ++ FR K VLI T
Sbjct: 257 TQAVVFCNTQMKVDWLTKKM---LESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLIST 313
Query: 718 DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL-Q 776
D+ RGLD+ V +V Y P+S Y+HR+GR+ R G +G ++ F+ ++K++ ++ Q
Sbjct: 314 DIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 373
Query: 777 NRRIRIEEIKL 787
+I+E+ +
Sbjct: 374 YYSTQIDEMPM 384
Score = 95 (38.5 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
LK ++ LV+DEAD +L++G++ + + L P Q +L SATL V +
Sbjct: 155 LKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLS---PNTQIILSSATLPQEVLEITNKF 211
Query: 250 LQNPIQI 256
+ P++I
Sbjct: 212 MHKPVKI 218
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 248 (92.4 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 67/216 (31%), Positives = 112/216 (51%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
TS+E GI + + + + + +QQ I+PIL+G DV+++SQ+G+GKT +A+
Sbjct: 17 TSFENI-GIDEGLLRGIY-AYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVG 74
Query: 450 IIQKLQEMRPKISRKDGIYAVIIL-PTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMK 508
+ ++R VIIL PTRELA QT ++ L + + GG+KM
Sbjct: 75 ALNC-------VNRNLNETQVIILSPTRELAEQTQKVCLALA-DYIHVTIYCCIGGKKMS 126
Query: 509 SEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
+ + G+ ++ TPGR+ H + LK ++ LV+DEAD +L++G++ + +
Sbjct: 127 DDIKALNNGVHVISGTPGRIY-HMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYR 185
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
L P Q IL SATL V + + P++I
Sbjct: 186 FLS---PNTQIILSSATLPQEVLEITNKFMHKPVKI 218
Score = 230 (86.0 bits), Expect = 7.7e-34, Sum P(2) = 7.7e-34
Identities = 59/172 (34%), Positives = 95/172 (55%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIIL-P 65
+ +QQ I+PIL+G DV+++SQ+G+GKT +A+ + ++R VIIL P
Sbjct: 41 SAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNC-------VNRNLNETQVIILSP 93
Query: 66 TRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKH 125
TRELA QT ++ L + + GG+KM + + G+ ++ TPGR+ H +
Sbjct: 94 TRELAEQTQKVCLALA-DYIHVTIYCCIGGKKMSDDIKALNNGVHVISGTPGRIY-HMLN 151
Query: 126 TETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
LK ++ LV+DEAD +L++G++ + + L P Q IL SATL
Sbjct: 152 LRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLS---PNTQIILSSATL 200
Score = 213 (80.0 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 46/131 (35%), Positives = 76/131 (58%)
Query: 658 SKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICT 717
++ +VF TQ D+ T+ + L N K+H MSQSER ++ FR K VLI T
Sbjct: 257 TQAVVFCNTQMKVDWLTKKM---LESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLIST 313
Query: 718 DVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEEL-Q 776
D+ RGLD+ V +V Y P+S Y+HR+GR+ R G +G ++ F+ ++K++ ++ Q
Sbjct: 314 DIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQ 373
Query: 777 NRRIRIEEIKL 787
+I+E+ +
Sbjct: 374 YYSTQIDEMPM 384
Score = 95 (38.5 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 190 LKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMT 249
LK ++ LV+DEAD +L++G++ + + L P Q +L SATL V +
Sbjct: 155 LKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLS---PNTQIILSSATLPQEVLEITNKF 211
Query: 250 LQNPIQI 256
+ P++I
Sbjct: 212 MHKPVKI 218
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 289 (106.8 bits), Expect = 5.3e-36, Sum P(3) = 5.3e-36
Identities = 79/239 (33%), Positives = 126/239 (52%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYAVIIL 473
T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y +II
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIIC 264
Query: 474 PTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 528
P+RELA QT LE + +L + S + + GG +K + IR G+ ++VATPGRL
Sbjct: 265 PSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRL 324
Query: 529 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588
+D + + + +L LDEADR++D G+E DI K Q+ Q++L SAT+
Sbjct: 325 MDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPK 380
Query: 589 AVQRLAGMTLQNPIQIDA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 640
+Q A L P+ I+ A + + + + + K +++ TPP + + A
Sbjct: 381 KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 439
Score = 266 (98.7 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 68/178 (38%), Positives = 102/178 (57%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYAVIIL 64
T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y +II
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIIC 264
Query: 65 PTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
P+RELA QT LE + +L + S + + GG +K + IR G+ ++VATPGRL
Sbjct: 265 PSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRL 324
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
+D + + + +L LDEADR++D G+E DI K Q+ Q++L SAT+
Sbjct: 325 MDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATM 378
Score = 185 (70.2 bits), Expect = 5.3e-36, Sum P(3) = 5.3e-36
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 660 MLVFMATQ-DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
+L+F + D+ H LL + E +A +HG Q ERT+ + FR K VL+ TD
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGV-EAVA---IHGGKDQEERTKAIEAFREGKKDVLVATD 490
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
VA++GLD P + ++ Y P +YVHR+GRT R G+ G + F+
Sbjct: 491 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
Score = 110 (43.8 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 197 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+L LDEADR++D G+E DI K Q+ Q++L SAT+ +Q A L P+ I
Sbjct: 340 YLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPKKIQNFAKSALVKPVTI 396
Query: 257 DA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 292
+ A + + + + + K +++ TPP + + A
Sbjct: 397 NVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 439
Score = 41 (19.5 bits), Expect = 5.3e-36, Sum P(3) = 5.3e-36
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 199 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQ 255
+LD+ + ++ R + + LK+++ +SV L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
Score = 40 (19.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+LD+ + ++ R + + LK+++ +S+ L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 289 (106.8 bits), Expect = 5.3e-36, Sum P(3) = 5.3e-36
Identities = 79/239 (33%), Positives = 126/239 (52%)
Query: 416 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYAVIIL 473
T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y +II
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIIC 264
Query: 474 PTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 528
P+RELA QT LE + +L + S + + GG +K + IR G+ ++VATPGRL
Sbjct: 265 PSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRL 324
Query: 529 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 588
+D + + + +L LDEADR++D G+E DI K Q+ Q++L SAT+
Sbjct: 325 MDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPK 380
Query: 589 AVQRLAGMTLQNPIQIDA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 640
+Q A L P+ I+ A + + + + + K +++ TPP + + A
Sbjct: 381 KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 439
Score = 266 (98.7 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 68/178 (38%), Positives = 102/178 (57%)
Query: 7 TTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKL--QEMRPKISRKDGIYAVIIL 64
T +Q I IL G D++ + TGSGKTL + +P+I QE R S+++G Y +II
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIIC 264
Query: 65 PTRELALQT---LEIFTKLCK--SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
P+RELA QT LE + +L + S + + GG +K + IR G+ ++VATPGRL
Sbjct: 265 PSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRL 324
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
+D + + + +L LDEADR++D G+E DI K Q+ Q++L SAT+
Sbjct: 325 MDLLQK-KMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATM 378
Score = 185 (70.2 bits), Expect = 5.3e-36, Sum P(3) = 5.3e-36
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 660 MLVFMATQ-DMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTD 718
+L+F + D+ H LL + E +A +HG Q ERT+ + FR K VL+ TD
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGV-EAVA---IHGGKDQEERTKAIEAFREGKKDVLVATD 490
Query: 719 VAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFL 764
VA++GLD P + ++ Y P +YVHR+GRT R G+ G + F+
Sbjct: 491 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536
Score = 110 (43.8 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 197 HLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQI 256
+L LDEADR++D G+E DI K Q+ Q++L SAT+ +Q A L P+ I
Sbjct: 340 YLALDEADRMIDMGFEGDIRTIFSYFKGQR---QTLLFSATMPKKIQNFAKSALVKPVTI 396
Query: 257 DA--ADSTDIHNTTDSLVIPDSLKQHFIV-----TPPKLRLVA 292
+ A + + + + + K +++ TPP + + A
Sbjct: 397 NVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFA 439
Score = 41 (19.5 bits), Expect = 5.3e-36, Sum P(3) = 5.3e-36
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 199 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQNPIQ 255
+LD+ + ++ R + + LK+++ +SV L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
Score = 40 (19.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 547 VLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQ 603
+LD+ + ++ R + + LK+++ +S+ L + G+T +PI+
Sbjct: 87 LLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIK 143
WARNING: HSPs involving 667 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 930 910 0.00089 122 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 917
No. of states in DFA: 616 (65 KB)
Total size of DFA: 371 KB (2179 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 79.19u 0.14s 79.33t Elapsed: 00:00:04
Total cpu time: 79.34u 0.14s 79.48t Elapsed: 00:00:04
Start: Thu Aug 15 14:24:26 2013 End: Thu Aug 15 14:24:30 2013
WARNINGS ISSUED: 2