RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15524
(930 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 122 bits (306), Expect = 4e-32
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 16/217 (7%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIP 449
++ E + + + + T +Q I L+ +++ +++TGSGKT ++AIP
Sbjct: 5 NFNEL-NLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP 62
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+I+ + E GI A+I+ PTRELA+Q + L + + G K
Sbjct: 63 LIELVNENN-------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIY--GGKAIY 113
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ + K +I+V TPGR+LDH TL V++ +LDEAD +L+ G+ +D +I
Sbjct: 114 PQIKALKNANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLNMGFIKD---VEKI 169
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDA 606
L + +L SAT+ + LA + + I A
Sbjct: 170 LNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
Score = 98.2 bits (244), Expect = 8e-24
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 14/180 (7%)
Query: 1 MNITQVTTVQQLSIQPILDGG-DVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIY 59
+ T +Q I L+ +++ +++TGSGKT ++AIP+I+ + E GI
Sbjct: 22 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN-------GIE 74
Query: 60 AVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRL 119
A+I+ PTRELA+Q + L + + G K + + K +I+V TPGR+
Sbjct: 75 AIILTPTRELAIQVADEIESLKGNKNLKIAKIY--GGKAIYPQIKALKNANIVVGTPGRI 132
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
LDH TL V++ +LDEAD +L+ G+ +D +IL + +L SAT+
Sbjct: 133 LDHINR-GTLNLKNVKYFILDEADEMLNMGFIKD---VEKILNACNKDKRILLFSATMPR 188
Score = 69.3 bits (169), Expect = 8e-14
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 186 HTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRL 245
+ TL V++ +LDEAD +L+ G+ +D +IL + +L SAT+ + L
Sbjct: 137 NRGTLNLKNVKYFILDEADEMLNMGFIKD---VEKILNACNKDKRILLFSATMPREILNL 193
Query: 246 AGMTLQNPIQIDA 258
A + + I A
Sbjct: 194 AKKYMGDYSFIKA 206
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 116 bits (290), Expect = 6e-30
Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+++ + + + + + + +QQ +I PI++G DVL ++Q+G+GKT ++I
Sbjct: 10 YKFDDM-ELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIA 67
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+Q++ + A+++ PTRELALQ ++ L V + +
Sbjct: 68 ALQRID------TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG--GTSFV 119
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
E A + I+V TPGR+ D+ + + K++ +LDEAD +L G++ I + +
Sbjct: 120 EDAEGLRDAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 178
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
L Q +LLSAT+ V + ++NP++I
Sbjct: 179 LPPTT---QVVLLSATMPNDVLEVTTKFMRNPVRI 210
Score = 89.9 bits (222), Expect = 6e-21
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 12/179 (6%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + +QQ +I PI++G DVL ++Q+G+GKT ++I +Q++ + A
Sbjct: 28 YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID------TSVKAPQA 81
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELALQ ++ L V + + E A + I+V TPGR+
Sbjct: 82 LMLAPTRELALQIQKVVMALAFHMDIKVHACIG--GTSFVEDAEGLRDAQIVVGTPGRVF 139
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
D+ + + K++ +LDEAD +L G++ I + +L Q +LLSAT+
Sbjct: 140 DNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT---QVVLLSATMPN 194
Score = 63.7 bits (154), Expect = 7e-12
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 178 TPA-TCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP + K++ +LDEAD +L G++ I + +L Q VLLSA
Sbjct: 134 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT---QVVLLSA 190
Query: 237 TLTPAVQRLAGMTLQNPIQI 256
T+ V + ++NP++I
Sbjct: 191 TMPNDVLEVTTKFMRNPVRI 210
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 113 bits (284), Expect = 5e-29
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 383 SEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGK 442
SE + +++ G+ + + + + + +QQ +I+ I+ G DV+ +SQ+G+GK
Sbjct: 10 SEEVDVTPTFDTM-GLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGK 67
Query: 443 TLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLT 502
T ++I ++Q L A+I+ PTRELA+Q + L + +
Sbjct: 68 TATFSISVLQCLDIQVR------ETQALILAPTRELAVQIQKGLLALGD-YMNVQCHACI 120
Query: 503 GGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD 562
GG + + ++ G ++ TPGR+ D + + ++ LVLDEAD +L++G++
Sbjct: 121 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSL-RTRAIKMLVLDEADEMLNKGFKEQ 179
Query: 563 IAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
I + L Q +L+SATL + + + +PI+I
Sbjct: 180 IYDVYRYLPPAT---QVVLISATLPHEILEMTNKFMTDPIRIL 219
Score = 85.3 bits (210), Expect = 3e-19
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 11/179 (6%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + +QQ +I+ I+ G DV+ +SQ+G+GKT ++I ++Q L A
Sbjct: 35 YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR------ETQA 88
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ PTRELA+Q + L + + GG + + ++ G ++ TPGR+
Sbjct: 89 LILAPTRELAVQIQKGLLALGD-YMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 147
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
D + + ++ LVLDEAD +L++G++ I + L Q +L+SATL
Sbjct: 148 DMIRRRSL-RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT---QVVLISATLPH 202
Score = 54.8 bits (131), Expect = 8e-09
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 178 TPATCW-CKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP + +L+ ++ LVLDEAD +L++G++ I + L Q VL+SA
Sbjct: 142 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT---QVVLISA 198
Query: 237 TLTPAVQRLAGMTLQNPIQID 257
TL + + + +PI+I
Sbjct: 199 TLPHEILEMTNKFMTDPIRIL 219
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 112 bits (280), Expect = 9e-29
Identities = 65/216 (30%), Positives = 116/216 (53%), Gaps = 12/216 (5%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+E++ + + + E M + + +Q+ SI L G D+L R++ G+GK+ AY IP
Sbjct: 3 NEFEDY-CLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIP 60
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
++++L +KD I A++I+PTRELALQ +I ++ K TGG ++
Sbjct: 61 LLERLDL------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ R+ + +++ATPGR+ K V+ +VLDEAD++L Q + + + + +
Sbjct: 115 DIMRLDDTVHVVIATPGRI-LDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
L K + Q +L SAT +VQ+ L+ P +I+
Sbjct: 174 LPKNR---QILLYSATFPLSVQKFMNSHLEKPYEIN 206
Score = 82.3 bits (202), Expect = 2e-18
Identities = 58/179 (32%), Positives = 98/179 (54%), Gaps = 10/179 (5%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
M + + +Q+ SI L G D+L R++ G+GK+ AY IP++++L +KD I A
Sbjct: 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL------KKDNIQA 74
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++I+PTRELALQ +I ++ K TGG ++ + R+ + +++ATPGR +
Sbjct: 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGR-I 133
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
K V+ +VLDEAD++L Q + + + + + L K + Q +L SAT
Sbjct: 134 LDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR---QILLYSATFPL 189
Score = 52.7 bits (125), Expect = 3e-08
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
K V+ +VLDEAD++L Q + + + + + L K + Q +L SAT +
Sbjct: 134 LDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR---QILLYSATFPLS 190
Query: 242 VQRLAGMTLQNPIQID 257
VQ+ L+ P +I+
Sbjct: 191 VQKFMNSHLEKPYEIN 206
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 111 bits (277), Expect = 3e-28
Identities = 52/216 (24%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
+ + +F + P + + + + + VQ I + G DVL ++++G GKT + +
Sbjct: 1 SGFRDF-LLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA 58
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
+Q+L+ + ++ +++ TRELA Q + + + K + + GG +K
Sbjct: 59 TLQQLEPVTGQV------SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 112
Query: 510 EKARIRK-GISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLE 568
++ ++K I+V TPGR+L ++L ++H +LDE D++L+Q R + E
Sbjct: 113 DEEVLKKNCPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ--E 169
Query: 569 ILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
I + + Q ++ SATL+ ++ + +Q+P++I
Sbjct: 170 IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 205
Score = 84.9 bits (209), Expect = 3e-19
Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 10/180 (5%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ VQ I + G DVL ++++G GKT + + +Q+L+ + + +
Sbjct: 19 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ------VSV 72
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRK-GISILVATPGRL 119
+++ TRELA Q + + + K + + GG +K ++ ++K I+V TPGR+
Sbjct: 73 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 132
Query: 120 LDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
L ++L ++H +LDE D++L+Q R + EI + + Q ++ SATL+
Sbjct: 133 LALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ--EIFRMTPHEKQVMMFSATLSK 189
Score = 53.7 bits (128), Expect = 1e-08
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 178 TPAT-CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP ++L ++H +LDE D++L+Q R + EI + + Q ++ SA
Sbjct: 128 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ--EIFRMTPHEKQVMMFSA 185
Query: 237 TLTPAVQRLAGMTLQNPIQI 256
TL+ ++ + +Q+P++I
Sbjct: 186 TLSKEIRPVCRKFMQDPMEI 205
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 111 bits (278), Expect = 4e-28
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 8/236 (3%)
Query: 373 NVPTRRLKPVSEALFAPTSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDV 432
++P P A +++E + P ++ N+ + + T +Q+ +I IL+ D+
Sbjct: 4 SIPVSVTGPDYSATNVIENFDEL-KLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDI 61
Query: 433 LVRSQTGSGKTLAYAIPIIQKLQEMRP---KISRKDGIYAVIILPTRELALQTLEIFTKL 489
+ +QTGSGKT A+ IPII L + S+ +I+ PTRELA+Q L K
Sbjct: 62 MACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 121
Query: 490 CKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLD 549
T + + GG S+ ++ G +LVATPGR L + +++VLD
Sbjct: 122 SL-NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGR-LVDFIEKNKISLEFCKYIVLD 179
Query: 550 EADRILDQGYERDIAEFLEILKKQKP-QFQSILLSATLTPAVQRLAGMTLQNPIQI 604
EADR+LD G+E I + +E Q+++ SAT +Q+LA L N I +
Sbjct: 180 EADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235
Score = 85.0 bits (209), Expect = 6e-19
Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 6/184 (3%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRP---KISRKDG 57
+ + T +Q+ +I IL+ D++ +QTGSGKT A+ IPII L + S+
Sbjct: 39 ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 98
Query: 58 IYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPG 117
+I+ PTRELA+Q L K T + + GG S+ ++ G +LVATPG
Sbjct: 99 PKCLILAPTRELAIQILSESQKFSL-NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPG 157
Query: 118 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSILLSAT 176
R L + +++VLDEADR+LD G+E I + +E Q+++ SAT
Sbjct: 158 R-LVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSAT 216
Query: 177 LTPA 180
Sbjct: 217 FPKE 220
Score = 53.8 bits (128), Expect = 2e-08
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKP-QFQSVLLSATLTP 240
+ +++VLDEADR+LD G+E I + +E Q+++ SAT
Sbjct: 160 VDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPK 219
Query: 241 AVQRLAGMTLQNPIQI 256
+Q+LA L N I +
Sbjct: 220 EIQKLAADFLYNYIFM 235
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 110 bits (276), Expect = 4e-28
Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 12/216 (5%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
S+++ + + + + + + +QQ +I P + G DV+ ++Q+G+GKT +AI
Sbjct: 12 DSFDDM-NLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 69
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
I+Q+++ A+++ PTRELA Q ++ L + + G
Sbjct: 70 ILQQIEL------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 123
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
+ + I+V TPGR+ D L ++ VLDEAD +L +G++ I + +
Sbjct: 124 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 182
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
L Q +LLSAT+ V + +++PI+I
Sbjct: 183 LNSNT---QVVLLSATMPSDVLEVTKKFMRDPIRIL 215
Score = 84.9 bits (209), Expect = 4e-19
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + +QQ +I P + G DV+ ++Q+G+GKT +AI I+Q+++ A
Sbjct: 30 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL------DLKATQA 83
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+++ PTRELA Q ++ L + + G + + I+V TPGR+
Sbjct: 84 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVF 143
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
D L ++ VLDEAD +L +G++ I + + L Q +LLSAT+
Sbjct: 144 DMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT---QVVLLSATMPS 198
Score = 53.3 bits (127), Expect = 2e-08
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 178 TPAT-CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP + L ++ VLDEAD +L +G++ I + + L Q VLLSA
Sbjct: 138 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT---QVVLLSA 194
Query: 237 TLTPAVQRLAGMTLQNPIQID 257
T+ V + +++PI+I
Sbjct: 195 TMPSDVLEVTKKFMRDPIRIL 215
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 102 bits (255), Expect = 2e-24
Identities = 39/357 (10%), Positives = 87/357 (24%), Gaps = 85/357 (23%)
Query: 426 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485
++ G+GKT Y I+++ K G+ +I+ PTR +A + E
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREA--------IKRGLRTLILAPTRVVAAEMEEA 57
Query: 486 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 545
L + G ++ + + ++
Sbjct: 58 LRGLPIRYQTPAIRAEHTGREI------------VDLMCHATFTMRLL--SPIRVPNYNL 103
Query: 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
+++DEA A + + + I ++AT + +
Sbjct: 104 IIMDEAHFTDPAS---IAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEER 160
Query: 606 AADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMA 665
++ + + D + K + F+
Sbjct: 161 EIPERSWNSGHEWV----------------------------------TDFKGKTVWFVP 186
Query: 666 TQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLD 725
+ + L +L SE + ++ TD++ G +
Sbjct: 187 SIKAGNDIAACLR---KNGKKVIQLSRKTFDSEYIKTRTNDWD----FVVTTDISEMGAN 239
Query: 726 L-------------------PLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763
I+ P + + R GR R +
Sbjct: 240 FKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI 296
Score = 78.8 bits (193), Expect = 2e-16
Identities = 34/298 (11%), Positives = 82/298 (27%), Gaps = 39/298 (13%)
Query: 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76
++ G+GKT Y I+++ K G+ +I+ PTR +A + E
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREA--------IKRGLRTLILAPTRVVAAEMEEA 57
Query: 77 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 136
L + G ++ + + ++
Sbjct: 58 LRGLPIRYQTPAIRAEHTGREI------------VDLMCHATFTMRLL--SPIRVPNYNL 103
Query: 137 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSAT------------LTPATCWC 184
+++DEA A + + + I ++AT
Sbjct: 104 IIMDEAHFTDPAS---IAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEER 160
Query: 185 KHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQR 244
+ E S E + + + + + L+K + + LS +
Sbjct: 161 EIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNG--KKVIQLSRKTFDSEYI 218
Query: 245 LAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLRLVALASFILGKCQ 302
+ + + + ++ P + I+T + R++ +
Sbjct: 219 KTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSS 276
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 96.6 bits (239), Expect = 3e-23
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 13/215 (6%)
Query: 391 SYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPI 450
++E+F + + + E + + +Q+ +I + G D+L R++ G+GKT A+ IP
Sbjct: 2 TFEDF-YLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP- 58
Query: 451 IQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSE 510
K+ K +I+ + I TGG ++ +
Sbjct: 59 ------TLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDD 112
Query: 511 KARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEIL 570
R+ + + ILV TPGR+ + S ++DEAD++L + ++ +IL
Sbjct: 113 ILRLNETVHILVGTPGRV-LDLASRKVADLSDCSLFIMDEADKMLSRDFKTI---IEQIL 168
Query: 571 KKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQID 605
P QS+L SAT V+ L P +I+
Sbjct: 169 SFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEIN 203
Score = 69.2 bits (168), Expect = 7e-14
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 11/179 (6%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + +Q+ +I + G D+L R++ G+GKT A+ IP K+ K
Sbjct: 19 AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIP-------TLEKVKPKLNKIQ 71
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
+I+ + I TGG ++ + R+ + + ILV TPGR +
Sbjct: 72 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGR-V 130
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
+ S ++DEAD++L + ++ +IL P QS+L SAT
Sbjct: 131 LDLASRKVADLSDCSLFIMDEADKMLSRDFKTI---IEQILSFLPPTHQSLLFSATFPL 186
Score = 51.9 bits (123), Expect = 7e-08
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 178 TPATC-WCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSA 236
TP + S ++DEAD++L + ++ +IL P QS+L SA
Sbjct: 126 TPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTI---IEQILSFLPPTHQSLLFSA 182
Query: 237 TLTPAVQRLAGMTLQNPIQID 257
T V+ L P +I+
Sbjct: 183 TFPLTVKEFMVKHLHKPYEIN 203
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 96.2 bits (238), Expect = 4e-23
Identities = 50/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 394 EFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQK 453
E + K+ L E Q Q+ I +L G D LV TG GK+L Y IP +
Sbjct: 5 EVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL 64
Query: 454 LQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKAR 513
V++ P L ++ + + S T ++++
Sbjct: 65 NGL------------TVVVSPLISLMKDQVDQL-QANGVAAACLNSTQTREQQLEVMTGC 111
Query: 514 IRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKK 572
I +L P RL+ E L L +DEA I G++ R L L++
Sbjct: 112 RTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ 170
Query: 573 QKPQFQSILLSATLTPAVQR--LAGMTLQNP-IQI 604
+ P + L+AT ++ + + L +P IQI
Sbjct: 171 RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205
Score = 83.5 bits (205), Expect = 9e-19
Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 15/180 (8%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 62
Q Q+ I +L G D LV TG GK+L Y IP + V+
Sbjct: 23 YQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL------------TVV 70
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDH 122
+ P L ++ + + S T ++++ I +L P RL+
Sbjct: 71 VSPLISLMKDQVDQL-QANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD 129
Query: 123 CKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSATLTPAT 181
E L L +DEA I G++ R L L+++ P + L+AT T
Sbjct: 130 NFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Score = 46.2 bits (108), Expect = 5e-06
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSVLLSATLTP 240
E L L +DEA I G++ R L L+++ P + L+AT
Sbjct: 127 MLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADD 186
Query: 241 AVQR--LAGMTLQNP-IQI 256
++ + + L +P IQI
Sbjct: 187 TTRQDIVRLLGLNDPLIQI 205
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 93.0 bits (230), Expect = 8e-22
Identities = 34/242 (14%), Positives = 70/242 (28%), Gaps = 31/242 (12%)
Query: 374 VPTRRLKPVSEALFAPTSYEEFP--GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGD 431
+ A A S FP + + + + + +Q++ + IL
Sbjct: 3 AAAAAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKC--VGEPRAIQKMWAKRILRKES 60
Query: 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491
+ TG GKT + + + +I PT L +Q E K +
Sbjct: 61 FAATAPTGVGKTSFGLAMSLFLALKGKR---------CYVIFPTSLLVIQAAETIRKYAE 111
Query: 492 SFTWIVPS-----WLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHL 546
+ ++ K + + I++ T L H + + +
Sbjct: 112 KAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE-----LGHFDFI 166
Query: 547 VLDEADRILDQGYERD--------IAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTL 598
+D+ D IL D + + + ++ +AT + L
Sbjct: 167 FVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL 226
Query: 599 QN 600
N
Sbjct: 227 LN 228
Score = 89.6 bits (221), Expect = 1e-20
Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 27/190 (14%)
Query: 3 ITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVI 62
+ + +Q++ + IL + TG GKT + + + +
Sbjct: 41 VGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR---------CYV 91
Query: 63 ILPTRELALQTLEIFTKLCKSFTWIVPS-----WLTGGEKMKSEKARIRKGISILVATPG 117
I PT L +Q E K + + ++ K + + I++ T
Sbjct: 92 IFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQ 151
Query: 118 RLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERD--------IAEFLEILKKQKPQFQ 169
L H + + + +D+ D IL D + + +
Sbjct: 152 FLSKHYRE-----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGC 206
Query: 170 SILLSATLTP 179
++ +AT
Sbjct: 207 LMVSTATAKK 216
Score = 46.4 bits (109), Expect = 6e-06
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 11/83 (13%)
Query: 178 TPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERD--------IAEFLEILKKQKPQF 229
T + + + + +D+ D IL D + + +
Sbjct: 149 TTQFLSKHYR---ELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARG 205
Query: 230 QSVLLSATLTPAVQRLAGMTLQN 252
++ +AT + L N
Sbjct: 206 CLMVSTATAKKGKKAELFRQLLN 228
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 88.5 bits (218), Expect = 2e-20
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 18/203 (8%)
Query: 393 EEFP-GIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPII 451
EE I + L E I ++ Q +++ + G ++L+ T +GKTL + ++
Sbjct: 4 EELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV 62
Query: 452 QKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEK 511
++ + + ++P R LA + E F K K I S +
Sbjct: 63 REAIKGGKSL---------YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRD---- 109
Query: 512 ARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILK 571
I+V T + ++ V LV+DE + + + + ++
Sbjct: 110 -EHLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR 167
Query: 572 KQKPQFQSILLSATLTPAVQRLA 594
+ + I LSAT P V +A
Sbjct: 168 RMNKALRVIGLSATA-PNVTEIA 189
Score = 81.9 bits (201), Expect = 3e-18
Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 15/180 (8%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
I ++ Q +++ + G ++L+ T +GKTL + ++++ + +
Sbjct: 21 EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSL-------- 72
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
++P R LA + E F K K I S + I+V T +
Sbjct: 73 -YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRD-----EHLGDCDIIVTTSEKAD 126
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 180
++ V LV+DE + + + + +++ + I LSAT
Sbjct: 127 SLIRN-RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNV 185
Score = 40.3 bits (93), Expect = 4e-04
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
V LV+DE + + + + +++ + + LSAT P
Sbjct: 126 DSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA-PN 184
Query: 242 VQRLA 246
V +A
Sbjct: 185 VTEIA 189
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 87.4 bits (215), Expect = 4e-20
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 9/215 (4%)
Query: 390 TSYEEFPGIHPFMKKNLNEGMNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIP 449
T + F PF+ + + + + T +Q+ I L G ++ +SQTG+GKT AY +P
Sbjct: 1 TQFTRF-PFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLP 58
Query: 450 IIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKS 509
I++K ++P+ + + TK C IV L GG +
Sbjct: 59 IMEK---IKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK 115
Query: 510 EKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEI 569
++ I++ TPGR+ + + L LV+DEAD +LD G+ D+ +
Sbjct: 116 ALEKLNVQPHIVIGTPGRI-NDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR 174
Query: 570 LKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQI 604
+ K Q ++ SAT+ ++ ++NP +
Sbjct: 175 MPKDL---QMLVFSATIPEKLKPFLKKYMENPTFV 206
Score = 59.3 bits (142), Expect = 2e-10
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 7/179 (3%)
Query: 1 MNITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYA 60
+ + T +Q+ I L G ++ +SQTG+GKT AY +PI++K ++P+ + +
Sbjct: 19 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK---IKPERAEVQAVIT 75
Query: 61 VIILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLL 120
TK C IV L GG + ++ I++ TPGR +
Sbjct: 76 APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGR-I 134
Query: 121 DHCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTP 179
+ + L LV+DEAD +LD G+ D+ + + K Q ++ SAT+
Sbjct: 135 NDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDL---QMLVFSATIPE 190
Score = 47.7 bits (112), Expect = 2e-06
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
+ L LV+DEAD +LD G+ D+ + + K Q ++ SAT+
Sbjct: 135 NDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDL---QMLVFSATIPEK 191
Query: 242 VQRLAGMTLQNPIQI 256
++ ++NP +
Sbjct: 192 LKPFLKKYMENPTFV 206
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 83.9 bits (206), Expect = 2e-19
Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
++Q ++ R AL + +++E LVF T+ +L
Sbjct: 4 IEQSYVEVNENERFEALCRLL--------KNKEFYGLVFCKTKRDTKELASMLRD---IG 52
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+HG +SQS+R +V + F+ K +LI TDV +RG+D+ ++ ++ Y P + Y
Sbjct: 53 FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESY 112
Query: 745 VHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEIK 786
+HR+GRT R G +G ++ + E K + ++ +++I+++K
Sbjct: 113 MHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 155
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 87.3 bits (216), Expect = 3e-19
Identities = 26/154 (16%), Positives = 42/154 (27%), Gaps = 21/154 (13%)
Query: 631 VTPPKLRLVALASF----ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIA 686
V P + VAL++ GK + + + L+F ++ D L I
Sbjct: 6 VPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLV---ALGIN 62
Query: 687 FFKLHGSMSQSERT----------EVFKTFRSVKSGVLICTDVAARG---LDLPLVDWIV 733
+ + S + T + +I + L I
Sbjct: 63 AVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIE 122
Query: 734 QYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPS 767
T P + R GRT R G G
Sbjct: 123 TTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 155
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 79.0 bits (194), Expect = 7e-17
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 654 EDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGV 713
E + +++ T + A+ E L K + + + ++ F +
Sbjct: 22 EKLGTGGIIYARTGEEAEEIYESLK---------NKFRIGIVTATKKGDYEKFVEGEIDH 72
Query: 714 LICT----DVAARGLDLP-LVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLFLIPSE 768
LI T RGLDLP + + V P + + + + LL +
Sbjct: 73 LIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMVKLLAYLYRN 128
Query: 769 VKLVEEL-QNRRIRIEEIK 786
V +E L I+E++
Sbjct: 129 VDEIERLLPAVERHIDEVR 147
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 72.6 bits (177), Expect = 2e-15
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 12/162 (7%)
Query: 626 KQHFI-VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
KQ ++ V + + L + ++ ++F T+ + T L +
Sbjct: 2 KQFYVNVEEEEYKYECLTDLY-------DSISVTQAVIFCNTRRKVEELTTKLRN---DK 51
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
++ + Q ER + K FRS S +LI TD+ ARG+D+ V ++ Y P++ +Y
Sbjct: 52 FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENY 111
Query: 745 VHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNRR-IRIEEI 785
+HR+GR R G +G ++ F+ +V + EL+ +IEE+
Sbjct: 112 IHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEEL 153
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 74.9 bits (183), Expect = 3e-15
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 652 VNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGS--------MSQSERTEVF 703
+ + SK++VF ++ A ++ + I + G +SQ E+ +
Sbjct: 156 LQRKQNSKIIVFTNYRETAKKIVNE---LVKDGIKAKRFVGQASKENDRGLSQREQKLIL 212
Query: 704 KTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHRVGRTARVGHEGSSLLF 763
F + VL+ T V GLD+P VD +V Y S+ + R GRT R G ++
Sbjct: 213 DEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR-HMPGRVIIL 271
Query: 764 LIPSEV 769
+
Sbjct: 272 MAKGTR 277
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 68.0 bits (165), Expect = 9e-14
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 12/167 (7%)
Query: 623 DSLKQHFI-VTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL 681
+ +KQ F+ V + + L + ++ ++F T+ D+ TE +
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLY-------DTLTITQAVIFCNTKRKVDWLTEKMRE-- 56
Query: 682 GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSS 741
N +HG M Q ER + K FRS S VLI TDV ARGLD+P V I+ Y P++
Sbjct: 57 -ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 115
Query: 742 TDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEIKL 787
Y+HR+GR+ R G +G ++ F+ +++++ +++ +I+E+ +
Sbjct: 116 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 162
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 65.3 bits (158), Expect = 1e-12
Identities = 26/199 (13%), Positives = 71/199 (35%), Gaps = 18/199 (9%)
Query: 566 FLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSL 625
F+ + + ++ +++ + + ++ +I A D +
Sbjct: 12 FVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYE---ALRAWE 68
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685
+ I K ++ L + + K+++F ++ +++
Sbjct: 69 EARRIAFNSKNKIRKLREIL-------ERHRKDKIIIFTRHNELVYRISKVFLIP----- 116
Query: 686 AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYV 745
+ S+ ER E+ + FR+ + ++ + V G+D+P + V + S+ +Y+
Sbjct: 117 ---AITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYI 173
Query: 746 HRVGRTARVGHEGSSLLFL 764
R+GR R +
Sbjct: 174 QRLGRILRPSKGKKEAVLY 192
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 62.0 bits (150), Expect = 4e-12
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 19/142 (13%)
Query: 634 PKLRLVALASF----ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFK 689
P + VAL++ GK + + + L+F ++ D L
Sbjct: 8 PNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLV----------A 57
Query: 690 LHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLP---LVDWIVQYTAPSSSTDYVH 746
L + R + V++ TD G ++D P +
Sbjct: 58 LGINAVAYYRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQ 117
Query: 747 RVGRTARVGHEGSSLLFLIPSE 768
R GRT R G G F+ P E
Sbjct: 118 RRGRTGR-GKPG-IYRFVAPGE 137
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 60.2 bits (144), Expect = 9e-11
Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 15/184 (8%)
Query: 411 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 470
++ Q Q++ + L+ TG GKTL + +L K G +
Sbjct: 6 DLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRL--------TKYGGKVL 56
Query: 471 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 530
++ PT+ L LQ E F +L + + E+ + ++ + ++
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLPPEK---IVALTGEKSPEERSKAWARAKVIVATPQTIE 113
Query: 531 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAV 590
+ + V +V DEA R + I K+Q I L+A+
Sbjct: 114 NDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFI---AREYKRQAKNPLVIGLTASPGSTP 170
Query: 591 QRLA 594
+++
Sbjct: 171 EKIM 174
Score = 58.2 bits (139), Expect = 4e-10
Identities = 35/196 (17%), Positives = 66/196 (33%), Gaps = 16/196 (8%)
Query: 2 NITQVTTVQQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAV 61
++ Q Q++ + L+ TG GKTL + +L K G +
Sbjct: 6 DLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRL--------TKYGGKVL 56
Query: 62 IILPTRELALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLD 121
++ PT+ L LQ E F +L + + E+ + ++ + ++
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLPPEK---IVALTGEKSPEERSKAWARAKVIVATPQTIE 113
Query: 122 HCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA- 180
+ + V +V DEA R + I K+Q I L+A+
Sbjct: 114 NDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFI---AREYKRQAKNPLVIGLTASPGSTP 170
Query: 181 TCWCKHTETLKFSKVE 196
+ L +E
Sbjct: 171 EKIMEVINNLGIEHIE 186
Score = 34.0 bits (76), Expect = 0.050
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 182 CWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPA 241
+ V +V DEA R + I K+Q + L+A+
Sbjct: 113 ENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFI---AREYKRQAKNPLVIGLTASPGST 169
Query: 242 VQRLA 246
+++
Sbjct: 170 PEKIM 174
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 58.9 bits (141), Expect = 1e-10
Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 623 DSLKQHFIVTPP-KLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVL 681
++++Q++++ K + AL + + ++F T+ A + T +
Sbjct: 4 NNIRQYYVLCEHRKDKYQALCNIY-------GSITIGQAIIFCQTRRNAKWLTVEMIQDG 56
Query: 682 GENIAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSS 741
+ G ++ +R + + FR K VLI T+V ARG+D+ V +V + P
Sbjct: 57 HQVSLL---SGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQ 113
Query: 742 TD------YVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQNR-RIRIEEIKLKD 789
+ Y+HR+GRT R G +G + + E+ + ++Q+ I+++ +D
Sbjct: 114 GEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAED 168
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 57.0 bits (136), Expect = 1e-09
Identities = 25/178 (14%), Positives = 67/178 (37%), Gaps = 10/178 (5%)
Query: 628 HFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAF 687
+++ L L ++ E +++ ++ + + + + + I+
Sbjct: 8 RYMLMEKFKPLDQLMRYV-------QEQRGKSGIIYCNSRAKVE---DTAARLQSKGISA 57
Query: 688 FKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR 747
H + + R +V + F+ +++ T G++ P V ++V + P + Y
Sbjct: 58 AAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQE 117
Query: 748 VGRTARVGHEGSSLLFLIPSEVKLVEELQNRRIRIEEIKLKDCLQNLLSVKMEGDLSR 805
GR R G ++LF P+++ + + + + ++ N + E R
Sbjct: 118 TGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCR 175
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 56.0 bits (134), Expect = 2e-09
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 11/151 (7%)
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704
++G+ + E E ++ + + D + I LH + ER E+ +
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLT----DYLKEAGIKVAYLHSEIKTLERIEIIR 75
Query: 705 TFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDYVHR--VGRTARVGHEGSSLL 762
R K VL+ ++ GLD+P V + A R + R + +
Sbjct: 76 DLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHV 135
Query: 763 FLIPSEV-----KLVEELQNRRIRIEEIKLK 788
+ + ++E + RR EE K
Sbjct: 136 IMYADTITKSMEIAIQETKRRRAIQEEYNRK 166
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 49.9 bits (118), Expect = 2e-07
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 12/159 (7%)
Query: 626 KQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENI 685
+ + A + E+E + + + L+ + +
Sbjct: 41 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS---RKLAECVRKGA 97
Query: 686 AFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPS------ 739
AF H + +R V FR V++ T A G++LP IV+
Sbjct: 98 AFH--HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR 155
Query: 740 -SSTDYVHRVGRTARVGHEGSSLLFLIPSEVKLVEELQN 777
++Y GR R G + +I + ++
Sbjct: 156 IKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKR 194
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 48.9 bits (115), Expect = 3e-07
Identities = 37/163 (22%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 625 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGEN 684
L+Q+++ + L + + E +++++F+ + +LL +N
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLL-------DVLEFNQVVIFVKSVQRCIALAQLLVE---QN 51
Query: 685 IAFFKLHGSMSQSERTEVFKTFRSVKSGVLICTDVAARGLDLPLVDWIVQYTAPSSSTDY 744
+H M Q ER ++ F+ + +L+ T++ RG+D+ V+ Y P S Y
Sbjct: 52 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 111
Query: 745 VHRVGRTARVGHEGSSLLFLIPS-EVKLVEELQNR-RIRIEEI 785
+HRV R R G +G ++ F+ + K++ ++Q+R + I E+
Sbjct: 112 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 154
Score = 28.1 bits (61), Expect = 3.7
Identities = 6/52 (11%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 277 LKQHFIVTPPKLRLVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTEL 328
L+Q+++ + L + + E +++++F+ + +L
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLL-------DVLEFNQVVIFVKSVQRCIALAQL 46
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 39.5 bits (91), Expect = 4e-04
Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 29/154 (18%)
Query: 23 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 82
+ + TGSGK+ P G +++ P+ L + K
Sbjct: 11 AHLHAPTGSGKSTKV------------PAAYAAQGYKVLVLNPSVAATLGFGA---YMSK 55
Query: 83 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 142
+ + ++ DE
Sbjct: 56 AHGVDPNIRTGVRTITTGSPITYSTYG------------KFLADGGCSGGAYDIIICDEC 103
Query: 143 DRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 176
D I L+ + +L +AT
Sbjct: 104 HS-TDATSILGIGTVLDQAET-AGARLVVLATAT 135
Score = 39.5 bits (91), Expect = 4e-04
Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 29/154 (18%)
Query: 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491
+ + TGSGK+ P G +++ P+ L + K
Sbjct: 11 AHLHAPTGSGKSTKV------------PAAYAAQGYKVLVLNPSVAATLGFGA---YMSK 55
Query: 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551
+ + ++ DE
Sbjct: 56 AHGVDPNIRTGVRTITTGSPITYSTYG------------KFLADGGCSGGAYDIIICDEC 103
Query: 552 DRILDQGYERDIAEFLEILKKQKPQFQSILLSAT 585
D I L+ + +L +AT
Sbjct: 104 HS-TDATSILGIGTVLDQAET-AGARLVVLATAT 135
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 38.1 bits (87), Expect = 0.001
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 27/161 (16%)
Query: 17 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 76
+ G ++ G+GKT + I+ + + +++ PTR + + E
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKEA 55
Query: 77 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 136
F L F S G ++ + E + E
Sbjct: 56 FHGLDVKFHTQAFSAHGSGREVIDAMCHATL--------------TYRMLEPTRVVNWEV 101
Query: 137 LVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSAT 176
+++DEA + R A + + IL++AT
Sbjct: 102 IIMDEAHFLDPASIAARGWAA--HRARANESAT--ILMTAT 138
Score = 38.1 bits (87), Expect = 0.001
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 27/161 (16%)
Query: 426 ILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEI 485
+ G ++ G+GKT + I+ + + +++ PTR + + E
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKEA 55
Query: 486 FTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEH 545
F L F S G ++ + E + E
Sbjct: 56 FHGLDVKFHTQAFSAHGSGREVIDAMCHATL--------------TYRMLEPTRVVNWEV 101
Query: 546 LVLDEADRILDQGYE-RDIAEFLEILKKQKPQFQSILLSAT 585
+++DEA + R A + + IL++AT
Sbjct: 102 IIMDEAHFLDPASIAARGWAA--HRARANESAT--ILMTAT 138
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 39.6 bits (92), Expect = 0.001
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 26/147 (17%)
Query: 655 DEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKSGVL 714
++ F+ + A+ L + L+ + E + K +
Sbjct: 34 ADKRPTAWFLPSIRAANVMAASLR---KAGKSVVVLNRKTFEREYPTIK----QKKPDFI 86
Query: 715 ICTDVAARGLDLPLVDWI------------------VQYTAPSSSTDYVHRVGRTARV-G 755
+ TD+A G +L + + ++ S++ R GR R
Sbjct: 87 LATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 146
Query: 756 HEGSSLLFLIPSEVKLVEELQNRRIRI 782
+G S + P+ + +
Sbjct: 147 RDGDSYYYSEPTSENNAHHVCWLEASM 173
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 35.2 bits (80), Expect = 0.018
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 37/168 (22%)
Query: 10 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 69
Q+ +++ L + TGSGKT + +I++PT L
Sbjct: 75 QEKALERWLVDKRGCIVLPTGSGKTHVA------------MAAINELSTPTLIVVPTLAL 122
Query: 70 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 129
A Q E + + + + + T + E L
Sbjct: 123 AEQWKERLGIFGEEYVGEFSGRIKELKPL----------------TVSTYDSAYVNAEKL 166
Query: 130 KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 177
++ L+ DE + + Y + I + F+ + L+AT
Sbjct: 167 -GNRFMLLIFDEVHHLPAESYVQ-------IAQMSIAPFR-LGLTATF 205
Score = 35.2 bits (80), Expect = 0.018
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 37/168 (22%)
Query: 419 QQLSIQPILDGGDVLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTREL 478
Q+ +++ L + TGSGKT + +I++PT L
Sbjct: 75 QEKALERWLVDKRGCIVLPTGSGKTHVA------------MAAINELSTPTLIVVPTLAL 122
Query: 479 ALQTLEIFTKLCKSFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETL 538
A Q E + + + + + T + E L
Sbjct: 123 AEQWKERLGIFGEEYVGEFSGRIKELKPL----------------TVSTYDSAYVNAEKL 166
Query: 539 KFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATL 586
++ L+ DE + + Y + I + F+ + L+AT
Sbjct: 167 -GNRFMLLIFDEVHHLPAESYVQ-------IAQMSIAPFR-LGLTATF 205
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 31.8 bits (71), Expect = 0.36
Identities = 32/290 (11%), Positives = 82/290 (28%), Gaps = 20/290 (6%)
Query: 432 VLVRSQTGSGKTLAYAIPIIQKLQEMRPKISRKDGIYAVIILPTRELALQTLEIFTKLCK 491
+LV TG+GK++ G VI+ P ++ + +
Sbjct: 53 LLVNGATGTGKSVLLRELAYT---------GLLRGDRMVIVDPNGDMLSKFGRDKDIILN 103
Query: 492 SFTWIVPSWLTGGEKMKSEKARIRKGISILVATPGRLLDHCKHTETLKFSKVEHLVLDEA 551
+ W E ++++ R +S++ + L + +
Sbjct: 104 PYDQRTKGWSFFNE-IRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIG 162
Query: 552 DRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGM--TLQNPIQIDAADS 609
+ + + + L+ + L A A + L L + +
Sbjct: 163 TPSMRELFHWTTIATFDDLRGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMP 222
Query: 610 TDIHNTTDSLVIPDSLKQHFIVTPPKLR-----LVALASFILGKCQNVNEDEESKMLVFM 664
+ L P+ + A + ++ E+ + ++ +F+
Sbjct: 223 DGDFSIRSWLEDPNGGNLFITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWLFI 282
Query: 665 ATQDMADYHTEL---LSTVLGENIAFFKLHGSMSQSERTEVFKTFRSVKS 711
+ L L+ + S SQ + K +++++
Sbjct: 283 DELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRA 332
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 30.2 bits (68), Expect = 0.75
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 645 ILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTVLGENIAFFKLHGSMSQSERTEVFK 704
+ +LV + ++ ++LL + I L+ + E + +
Sbjct: 23 VAEDVAQRYM-TGQPVLVGTVAVETSELISKLLKN---KGIPHQVLNAKNHEREAQIIEE 78
Query: 705 TFRSVKSGVLICTDVAARGLDLPLVD--------WIVQYTAPSSSTDYVHRVGRTARVGH 756
+ K V I T++A RG D+ L + +V S GR+ R G
Sbjct: 79 AGQ--KGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGD 136
Query: 757 EGSSLLFL 764
G + +L
Sbjct: 137 PGITQFYL 144
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 29.7 bits (66), Expect = 1.1
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 180 ATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF 218
A W K+ +T F+ + +E + +D G+ + IA+
Sbjct: 111 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADA 149
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW
{Staphylococcus aureus [TaxId: 1280]}
Length = 267
Score = 29.2 bits (64), Expect = 1.9
Identities = 6/54 (11%), Positives = 19/54 (35%)
Query: 132 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCK 185
+ ++ + + R ++I + +E L +Q+ + + A
Sbjct: 10 TLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINI 63
Score = 29.2 bits (64), Expect = 2.3
Identities = 6/49 (12%), Positives = 19/49 (38%)
Query: 541 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPA 589
+ ++ + + R ++I + +E L +Q+ + + A
Sbjct: 10 TLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIA 58
Score = 28.4 bits (62), Expect = 3.6
Identities = 5/36 (13%), Positives = 17/36 (47%)
Query: 193 SKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQ 228
+ ++ + + R ++I + +E L +Q+ +
Sbjct: 10 TLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQIE 45
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 29.2 bits (65), Expect = 2.2
Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 14/181 (7%)
Query: 178 TPATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEF----LEILKKQK----PQF 229
K KVE L++D ++ ++G++ D E +E ++
Sbjct: 88 PQFGIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPR 147
Query: 230 QSVLLSATLTPAVQRLAGMTLQNPIQIDAADSTDIHNTTDSLVIPDSLKQHFIVTPPKLR 289
L+ +++ + + + A T I V +++ + ++
Sbjct: 148 GLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVT 207
Query: 290 LVALASFILGKCQNVNEDEESKMLVFMATQDMADYHTELLSTKKKIKKLKEYNIDPDNYE 349
+ + V E + + T++ +L + ++LK PD E
Sbjct: 208 IEMQPDPEKATQEEVEEKNILEKVKAAMTEE------DLAELARATEELKLKQETPDPPE 261
Query: 350 I 350
Sbjct: 262 A 262
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 28.9 bits (63), Expect = 3.2
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQN 600
VLDE D LD + IA ++ + QF I L T+ L G+ Q
Sbjct: 358 FVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQ 412
Score = 28.5 bits (62), Expect = 3.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 137 LVLDEADRILDQGYERDIAEFLEILKKQKPQF 168
VLDE D LD + IA ++ + QF
Sbjct: 358 FVLDEVDAALDITNVQRIAAYIRRHRNPDLQF 389
Score = 28.5 bits (62), Expect = 3.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQF 229
VLDE D LD + IA ++ + QF
Sbjct: 358 FVLDEVDAALDITNVQRIAAYIRRHRNPDLQF 389
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 28.6 bits (62), Expect = 3.8
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 26/74 (35%)
Query: 137 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVE 196
L+LDE LD E + + I+++ + ++L V
Sbjct: 229 LILDEPTPYLD---EERRRKLITIMERYLKKIPQVIL---------------------VS 264
Query: 197 HL--VLDEADRILD 208
H + D AD ++
Sbjct: 265 HDEELKDAADHVIR 278
Score = 28.2 bits (61), Expect = 4.3
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 180 ATCWCKHTETLKFSKVEHLVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLL 234
A + L+LDE LD E + + I+++ + V+L
Sbjct: 213 AFRLAMSLYLAGEISL--LILDEPTPYLD---EERRRKLITIMERYLKKIPQVIL 262
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 28.3 bits (61), Expect = 4.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 198 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSVLLSATLTPAVQRLAGMTLQN 252
L+LDE LD+ R + +E K+ PQ V L A + ++L+N
Sbjct: 306 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLEN 360
Score = 28.3 bits (61), Expect = 4.8
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 26/74 (35%)
Query: 137 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPATCWCKHTETLKFSKVE 196
L+LDE LD E + + I+++ + ++L V
Sbjct: 306 LILDEPTPYLD---EERRRKLITIMERYLKKIPQVIL---------------------VS 341
Query: 197 HL--VLDEADRILD 208
H + D AD ++
Sbjct: 342 HDEELKDAADHVIR 355
Score = 28.3 bits (61), Expect = 4.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 546 LVLDEADRILDQGYERDIAEFLEILKKQKPQFQSILLSATLTPAVQRLAGMTLQN 600
L+LDE LD+ R + +E K+ PQ + L A + ++L+N
Sbjct: 306 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLEN 360
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 26.2 bits (58), Expect = 7.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 320 DMADYHTELLSTKKKIKKLKEYNIDPDNYEIPKKTEV 356
+ Y EL + + KLKE + D Y++ K+ EV
Sbjct: 16 EEGYYQQELKDQEAHVAKLKE-DKSVDPYDLKKQEEV 51
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 26.2 bits (58), Expect = 7.6
Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 319 QDMADYHTELLSTKKKIKKLKEYNIDPDNYEIPKKTEV 356
++ Y E ++KI+K++ + + Y+I K+ E+
Sbjct: 18 KERVMYEKEAKQQEEKIEKMRAEDGEN--YDIKKQAEI 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.379
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,303,653
Number of extensions: 155948
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 83
Length of query: 930
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 836
Effective length of database: 1,116,976
Effective search space: 933791936
Effective search space used: 933791936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.7 bits)