BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15525
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGY|H Chain H, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|T Chain T, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|H Chain H, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|H Chain H, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|H Chain H, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|H Chain H, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|H Chain H, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|U Chain U, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|H Chain H, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|U Chain U, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|H Chain H, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|U Chain U, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|H Chain H, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|H Chain H, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|H Chain H, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|HH Chain h, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 78
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 48 LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
LVDP T+RE+C + C K ++L+ C++RV+S+ T E C EEL+D+ H DHCVAH
Sbjct: 13 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 72
Query: 107 IHKYLK 112
+ LK
Sbjct: 73 LFNSLK 78
>pdb|1BCC|H Chain H, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|H Chain H, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|H Chain H, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 78
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 48 LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
LVDP T+RE+C + C K ++L+ C++RV+S+ T E C EEL D+ H DHCVAH
Sbjct: 13 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELFDFLHARDHCVAHK 72
Query: 107 IHKYLK 112
+ LK
Sbjct: 73 LFNSLK 78
>pdb|3CWB|H Chain H, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|U Chain U, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|H Chain H, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|U Chain U, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|H Chain H, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|U Chain U, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|H Chain H, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|U Chain U, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|H Chain H, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|U Chain U, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|H Chain H, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|U Chain U, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|H Chain H, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|U Chain U, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|H Chain H, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|U Chain U, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|H Chain H, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|U Chain U, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|H Chain H, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|U Chain U, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|H Chain H, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|U Chain U, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|H Chain H, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|U Chain U, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|H Chain H, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|U Chain U, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 77
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 48 LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
LVDP T+RE C + C K ++L+ C+ RV+S+ +T E C EEL D+ H DHCVAH
Sbjct: 12 LVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHK 71
Query: 107 IHKYLK 112
+ LK
Sbjct: 72 LFNKLK 77
>pdb|1QCR|H Chain H, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 60
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 53 VTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYL 111
T+RE+C + C K ++L+ C++RV+S+ T E C EEL+D+ H DHCVAH + L
Sbjct: 1 TTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSL 60
>pdb|1Q3C|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-Viii (Nei) From E. Coli: The E2a Mutant At
2.3 Resolution
Length = 262
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 13 PSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKL 71
P I+ + L A + F FP +K + +L+ VT E +A T + + L
Sbjct: 4 PEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDL 62
>pdb|1K3W|A Chain A, Crystal Structure Of A Trapped Reaction Intermediate Of
The Dna Repair Enzyme Endonuclease Viii With Dna
pdb|1K3X|A Chain A, Crystal Structure Of A Trapped Reaction Intermediate Of
The Dna Repair Enzyme Endonuclease Viii With
Brominated-Dna
pdb|1Q39|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-Viii (Nei) From E. Coli: The Wt Enzyme At
2.8 Resolution.
pdb|2EA0|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-viii (nei) From E. Coli In Complex With
Ap-site Containing Dna Substrate
Length = 262
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 13 PSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKL 71
P I+ + L A + F FP +K + +L+ VT E +A T + + L
Sbjct: 4 PEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDL 62
>pdb|1Q3B|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-Viii (Nei) From E. Coli: The R252a Mutant
At 2.05 Resolution.
pdb|2OPF|A Chain A, Crystal Structure Of The Dna Repair Enzyme
Endonuclease-Viii (Nei) From E. Coli (R252a) In Complex
With Ap-Site Containing Dna Substrate
Length = 262
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 13 PSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKL 71
P I+ + L A + F FP +K + +L+ VT E +A T + + L
Sbjct: 4 PEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDL 62
>pdb|2OQ4|A Chain A, Crystal Structure Of The Dna Repair Enzyme Endonuclease-
Viii (Nei) From E. Coli (E2q) In Complex With Ap-Site
Containing Dna Substrate
pdb|2OQ4|B Chain B, Crystal Structure Of The Dna Repair Enzyme Endonuclease-
Viii (Nei) From E. Coli (E2q) In Complex With Ap-Site
Containing Dna Substrate
Length = 262
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 13 PSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKL 71
P I+ + L A + F FP +K + +L+ VT E +A T + + L
Sbjct: 4 PEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDL 62
>pdb|1WCG|A Chain A, Aphid Myrosinase
pdb|1WCG|B Chain B, Aphid Myrosinase
Length = 464
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 8 AIFKFPSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREK 58
+F P ++++ TA+ A QF + F P K + ++ V + K
Sbjct: 227 GVFFMPKNAESDDDIETAERANQFERGWFGHPVYKGDYPPIMKKWVDQKSK 277
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 73 QCNDRVNSKQNTTESCYEELIDYAHCVDHCV 103
QC D + QN + CYE + A H V
Sbjct: 121 QCRDALAIVQNQVQQCYETALSQAQTYRHQV 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,195,760
Number of Sequences: 62578
Number of extensions: 110859
Number of successful extensions: 299
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 39
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)