BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15525
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P00126|QCR6_BOVIN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Bos taurus
GN=UQCRH PE=1 SV=2
Length = 91
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 48 LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
LVDP T+RE+C + C K ++L+ C++RV+S+ T E C EEL+D+ H DHCVAH
Sbjct: 26 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 85
Query: 107 IHKYLK 112
+ LK
Sbjct: 86 LFNSLK 91
>sp|Q5M9I5|QCR6_RAT Cytochrome b-c1 complex subunit 6, mitochondrial OS=Rattus
norvegicus GN=Uqcrh PE=3 SV=1
Length = 89
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 48 LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
LVDP T+RE C + C K ++L+ C+ RV+S+ T E C EEL D+ H DHCVAH
Sbjct: 24 LVDPLTTVREHCEQLEKCVKARERLESCDRRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83
Query: 107 IHKYLK 112
+ K LK
Sbjct: 84 LFKSLK 89
>sp|P99028|QCR6_MOUSE Cytochrome b-c1 complex subunit 6, mitochondrial OS=Mus musculus
GN=Uqcrh PE=1 SV=2
Length = 89
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 48 LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
LVDP T+RE C + C K ++L+ C++RV+S+ T E C EEL D+ H DHCVAH
Sbjct: 24 LVDPLTTVREHCEQLEKCVKARERLELCDNRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83
Query: 107 IHKYLK 112
+ K LK
Sbjct: 84 LFKNLK 89
>sp|P07919|QCR6_HUMAN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Homo sapiens
GN=UQCRH PE=1 SV=2
Length = 91
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 48 LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
LVDP T+RE+C + C K ++L+ C++RV+S+ +T E C EEL D+ H DHCVAH
Sbjct: 26 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHCVAHK 85
Query: 107 IHKYLK 112
+ LK
Sbjct: 86 LFNNLK 91
>sp|Q8SPH5|QCR6_MACFA Cytochrome b-c1 complex subunit 6, mitochondrial OS=Macaca
fascicularis GN=UQCRH PE=3 SV=1
Length = 91
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 48 LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
LVDP T+RE+C + C K ++L+ C+ RV+S+ T E C EEL+D+ H DHCVA+
Sbjct: 26 LVDPLTTVREQCEQLEKCVKARERLELCDKRVSSRSRTEEDCTEELLDFLHARDHCVAYK 85
Query: 107 IHKYLK 112
+ LK
Sbjct: 86 LFNNLK 91
>sp|P48504|QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2
Length = 69
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 45 EEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVA 104
+EE+VDP+ TL C + C + L + Q C RV ++ + C + DY HC+D CVA
Sbjct: 3 DEEVVDPKATLEVSC-KPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCVA 61
Query: 105 HDIHKYLK 112
+ +LK
Sbjct: 62 AKLFDHLK 69
>sp|Q94218|UFSP_CAEEL Probable Ufm1-specific protease OS=Caenorhabditis elegans
GN=F38A5.1 PE=3 SV=1
Length = 589
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 14 SIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKLQQ 73
S++A E+ + A++ A F+F + AE + +RE+ EA KYLDK +
Sbjct: 163 SLRAGREQEDVKSAAERLSMASFRFTYLNAEH------GLVIREQKPEAAQQKYLDKFSK 216
>sp|Q2RJM5|IF2_MOOTA Translation initiation factor IF-2 OS=Moorella thermoacetica
(strain ATCC 39073) GN=infB PE=3 SV=1
Length = 903
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 18 EEEELNTAQMAQQFFKAIFKFPSIK--AEEEELVDPQVTLREK 58
+E +L TA + Q AI + + K E E+LVDP TLRE+
Sbjct: 362 QELDLETAALVAQDLGAIVEIKAEKPITELEDLVDPPETLRER 404
>sp|P43493|THCC_RHOER Rhodocoxin OS=Rhodococcus erythropolis GN=thcC PE=1 SV=2
Length = 107
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 37 KFPSIKAEEEELVDPQVTLREKCSEAHC 64
KFPSI EE+E++D V+ R + S C
Sbjct: 60 KFPSISEEEDEMLDDTVSPRTEASRLSC 87
>sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2
SV=1
Length = 402
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 37 KFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYA 96
K P K+E + P ++E A K L KLQ C RV EL+D A
Sbjct: 48 KPPKDKSERKPYPTP---MKELIRRAKEEKQLRKLQPC--RVLEDPPDNGLLVPELVDVA 102
Query: 97 HCVDHC 102
HCV C
Sbjct: 103 HCVHRC 108
>sp|A4W871|END8_ENT38 Endonuclease 8 OS=Enterobacter sp. (strain 638) GN=nei PE=3 SV=1
Length = 263
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 13 PSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKY 67
P I+ + L A + A F FP +K+ E L+ +VT E +A T +
Sbjct: 5 PEIRRAADSLEAAIKGKPLTNAWFAFPQLKSFESSLIGQKVTQIETRGKALLTHF 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,373,341
Number of Sequences: 539616
Number of extensions: 1458634
Number of successful extensions: 3849
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 3826
Number of HSP's gapped (non-prelim): 57
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)