Query psy15525
Match_columns 112
No_of_seqs 103 out of 222
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 23:34:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02320 UCR_hinge: Ubiquinol- 100.0 3.7E-34 8E-39 189.5 6.0 64 49-112 1-65 (65)
2 KOG4763|consensus 100.0 2.8E-30 6.2E-35 175.8 6.2 67 46-112 10-77 (77)
3 PF05254 UPF0203: Uncharacteri 94.7 0.064 1.4E-06 35.8 4.3 42 62-103 7-53 (68)
4 KOG3481|consensus 92.2 0.3 6.5E-06 34.5 4.3 42 62-103 11-57 (87)
5 PLN03079 Uncharacterized prote 91.9 0.28 6.1E-06 34.9 3.9 43 62-104 16-63 (91)
6 PF10200 Ndufs5: NADH:ubiquino 82.0 2.1 4.6E-05 30.5 3.5 39 62-101 31-69 (96)
7 PF05811 DUF842: Eukaryotic pr 72.0 5.2 0.00011 29.2 3.3 38 73-112 83-128 (131)
8 PF08583 Cmc1: Cytochrome c ox 47.1 29 0.00062 21.6 3.0 49 54-105 4-52 (69)
9 PLN03079 Uncharacterized prote 42.7 20 0.00043 25.6 2.0 16 62-77 45-60 (91)
10 PF14233 DUF4335: Domain of un 32.7 28 0.00061 26.9 1.6 17 89-105 117-133 (189)
11 COG5050 EPT1 sn-1,2-diacylglyc 32.4 22 0.00048 31.0 1.0 27 76-104 98-124 (384)
12 KOG4110|consensus 27.3 59 0.0013 24.2 2.4 36 64-100 36-71 (120)
13 PF10104 Brr6_like_C_C: Di-sul 24.9 41 0.00088 24.6 1.2 19 48-66 61-80 (135)
14 KOG3480|consensus 23.3 38 0.00083 24.1 0.7 43 48-108 24-66 (90)
15 PF01579 DUF19: Domain of unkn 20.9 1.3E+02 0.0028 20.6 3.0 45 48-92 33-102 (160)
No 1
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=100.00 E-value=3.7e-34 Score=189.46 Aligned_cols=64 Identities=50% Similarity=0.940 Sum_probs=58.2
Q ss_pred CCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525 49 VDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK 112 (112)
Q Consensus 49 vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK 112 (112)
|||++.||++|++ ++|++++++|++|++||+++++++|||+||||||||||||||||+||++||
T Consensus 1 VDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCvD~CvapklF~~LK 65 (65)
T PF02320_consen 1 VDPKDALREECKETPKCAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCVDHCVAPKLFKKLK 65 (65)
T ss_dssp --HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHHHHHHHHHHGGC--
T ss_pred CCchHHHHHHhccchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence 7999999999977 999999999999999999999999999999999999999999999999998
No 2
>KOG4763|consensus
Probab=99.96 E-value=2.8e-30 Score=175.81 Aligned_cols=67 Identities=46% Similarity=0.826 Sum_probs=65.0
Q ss_pred cccCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525 46 EELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK 112 (112)
Q Consensus 46 EE~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK 112 (112)
|..|||+..+||.|++ ++|++....|++|++||+|++.|+++|++||||||||+|||||||||++||
T Consensus 10 E~vvDplt~~rE~C~~~~kcvK~~~~l~~C~~rv~s~s~tee~Ct~e~fDy~h~~DhCva~KlFa~LK 77 (77)
T KOG4763|consen 10 ELVVDPLTYVRESCKQLPKCVKPLLELQACVKRVQSRSSTEEHCTGEYFDYWHCLDHCVAPKLFANLK 77 (77)
T ss_pred hhhccHHHHHHHHHHhhHHHhhHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5567999999999999 999999999999999999999999999999999999999999999999998
No 3
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=94.75 E-value=0.064 Score=35.85 Aligned_cols=42 Identities=29% Similarity=0.623 Sum_probs=33.4
Q ss_pred hhhhhHHHHHHHHHHhhhc----CCC-CCCChhhHHHHHHHhhhhhh
Q psy15525 62 AHCTKYLDKLQQCNDRVNS----KQN-TTESCYEELIDYAHCVDHCV 103 (112)
Q Consensus 62 ~~C~~~~~~yeeC~eRV~s----~~~-t~E~C~eE~fDl~hCvD~Cv 103 (112)
+.|..++..|+.|-.+==+ +++ ....|.+++-+|..||..=.
T Consensus 7 ~eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~al 53 (68)
T PF05254_consen 7 PECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQKAL 53 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 7899999999999888532 233 44699999999999986543
No 4
>KOG3481|consensus
Probab=92.15 E-value=0.3 Score=34.55 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHHHh-----hhcCCCCCCChhhHHHHHHHhhhhhh
Q psy15525 62 AHCTKYLDKLQQCNDR-----VNSKQNTTESCYEELIDYAHCVDHCV 103 (112)
Q Consensus 62 ~~C~~~~~~yeeC~eR-----V~s~~~t~E~C~eE~fDl~hCvD~Cv 103 (112)
+.|.+++..|+.|-.+ +-.+....+.|+.++-.|..||..=.
T Consensus 11 ~eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal 57 (87)
T KOG3481|consen 11 PECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKAL 57 (87)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHH
Confidence 6899999999999766 33455678999999999999987654
No 5
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=91.90 E-value=0.28 Score=34.89 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=33.6
Q ss_pred hhhhhHHHHHHHHHHhhhc----CCCC-CCChhhHHHHHHHhhhhhhh
Q psy15525 62 AHCTKYLDKLQQCNDRVNS----KQNT-TESCYEELIDYAHCVDHCVA 104 (112)
Q Consensus 62 ~~C~~~~~~yeeC~eRV~s----~~~t-~E~C~eE~fDl~hCvD~CvA 104 (112)
+.|..++..|+.|=.|==+ +++. +..|.+++-.|..||..=..
T Consensus 16 ~eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~aL~ 63 (91)
T PLN03079 16 SPCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEHLE 63 (91)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHH
Confidence 5699999999999888533 3444 57899999999999865443
No 6
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=81.95 E-value=2.1 Score=30.52 Aligned_cols=39 Identities=23% Similarity=0.606 Sum_probs=33.3
Q ss_pred hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhh
Q psy15525 62 AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDH 101 (112)
Q Consensus 62 ~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~ 101 (112)
..|..++..|-+|.+.+.. ..+++.|.-++-||+-|+-|
T Consensus 31 ~RC~~FE~e~i~C~~~~G~-~r~kKeC~~e~EDy~EClh~ 69 (96)
T PF10200_consen 31 SRCHPFEKEWIECAEAYGQ-TRGKKECKLELEDYYECLHH 69 (96)
T ss_pred CchHHHHHHHHHHHHHHcc-cchhhhchhHHhHHHHHHhh
Confidence 5799999999999987644 45689999999999999854
No 7
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=72.02 E-value=5.2 Score=29.20 Aligned_cols=38 Identities=34% Similarity=0.677 Sum_probs=26.7
Q ss_pred HHHHhhhcC--CCCCCChhhHHHHHHHhhhhhhh------HHHhhhcC
Q psy15525 73 QCNDRVNSK--QNTTESCYEELIDYAHCVDHCVA------HDIHKYLK 112 (112)
Q Consensus 73 eC~eRV~s~--~~t~E~C~eE~fDl~hCvD~CvA------PKLF~~LK 112 (112)
.|++++++. +++.+.=... +|-.|+..||- |.|+++||
T Consensus 83 ~C~dk~~d~~~~~~~~~~~~~--~~e~C~~~Cvd~hi~llP~l~~r~k 128 (131)
T PF05811_consen 83 HCQDKAKDKMDPNPNESDAEK--QLESCVNKCVDDHIKLLPSLTKRMK 128 (131)
T ss_pred HHHHHHHhhccCCCCchHHHH--HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 678888763 3444444444 88899999997 77777765
No 8
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=47.09 E-value=29 Score=21.62 Aligned_cols=49 Identities=16% Similarity=0.411 Sum_probs=34.4
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhH
Q psy15525 54 TLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAH 105 (112)
Q Consensus 54 ~LrEeC~~~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAP 105 (112)
.|++.=. +.|..+...|.+|... +....-..|-.+.-.+.-|+-.=-..
T Consensus 4 ~l~~~~~-~~C~~~i~~~~~C~~~--~~~~~~~~C~~~~~~m~~Cl~~~~~~ 52 (69)
T PF08583_consen 4 QLKEEAH-KKCADEIEAFAECHKD--RTFKFVGKCREEKKAMNECLKEERND 52 (69)
T ss_pred HHhHHHH-HHhHHHHHHHHHHHhc--chHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 3444444 6788999999999998 32234567999999888887544333
No 9
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=42.71 E-value=20 Score=25.55 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=14.3
Q ss_pred hhhhhHHHHHHHHHHh
Q psy15525 62 AHCTKYLDKLQQCNDR 77 (112)
Q Consensus 62 ~~C~~~~~~yeeC~eR 77 (112)
..|+.+|+.|++|+.+
T Consensus 45 ~eC~~~w~~Yq~Cv~~ 60 (91)
T PLN03079 45 EDCVAEWHKYRACLSE 60 (91)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3699999999999987
No 10
>PF14233 DUF4335: Domain of unknown function (DUF4335)
Probab=32.69 E-value=28 Score=26.94 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.5
Q ss_pred hhHHHHHHHhhhhhhhH
Q psy15525 89 YEELIDYAHCVDHCVAH 105 (112)
Q Consensus 89 ~eE~fDl~hCvD~CvAP 105 (112)
+=|+||++.|+|.+.+.
T Consensus 117 ~~QLfDLv~aLDq~~~D 133 (189)
T PF14233_consen 117 TSQLFDLVEALDQFFAD 133 (189)
T ss_pred hhHHHHHHHHHHHHhhc
Confidence 45899999999999773
No 11
>COG5050 EPT1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]
Probab=32.39 E-value=22 Score=31.00 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=21.6
Q ss_pred HhhhcCCCCCCChhhHHHHHHHhhhhhhh
Q psy15525 76 DRVNSKQNTTESCYEELIDYAHCVDHCVA 104 (112)
Q Consensus 76 eRV~s~~~t~E~C~eE~fDl~hCvD~CvA 104 (112)
|-..+|..+...=.||+|| ||||.|.+
T Consensus 98 DG~qARRTGt~spLGeLFD--H~vDsint 124 (384)
T COG5050 98 DGRQARRTGTGSPLGELFD--HGVDSINT 124 (384)
T ss_pred ccHhhhcCCCCCCcHHHHh--hhHHHHHH
Confidence 3346666777888999999 99999986
No 12
>KOG4110|consensus
Probab=27.32 E-value=59 Score=24.22 Aligned_cols=36 Identities=22% Similarity=0.534 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhh
Q psy15525 64 CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVD 100 (112)
Q Consensus 64 C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD 100 (112)
|-++-.++-+|.+-+.. .-++.-|--|+-||+.||-
T Consensus 36 cg~FE~e~~eC~eayG~-~~g~keC~ie~~dFqECv~ 71 (120)
T KOG4110|consen 36 CGKFEKEWMECAEAYGL-ERGEKECAIEYDDFQECVL 71 (120)
T ss_pred ccHHHHHHHHHHHHHhh-HhhhHHHHHHHHHHHHHHH
Confidence 77889999999998765 2367889999999999984
No 13
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=24.87 E-value=41 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.3
Q ss_pred cCCchHHHHHhhhh-hhhhh
Q psy15525 48 LVDPQVTLREKCSE-AHCTK 66 (112)
Q Consensus 48 ~vDP~~~LrEeC~~-~~C~~ 66 (112)
+..+.|+|++.|.+ .+|..
T Consensus 61 ~~~rvPALe~~C~~We~CMn 80 (135)
T PF10104_consen 61 PETRVPALEEQCDEWEKCMN 80 (135)
T ss_pred CCCCCcHHHHHHHHHHHHHc
Confidence 56678999999998 77763
No 14
>KOG3480|consensus
Probab=23.30 E-value=38 Score=24.13 Aligned_cols=43 Identities=26% Similarity=0.511 Sum_probs=24.8
Q ss_pred cCCchHHHHHhhhhhhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHh
Q psy15525 48 LVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIH 108 (112)
Q Consensus 48 ~vDP~~~LrEeC~~~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF 108 (112)
..|-...|...|- .+|.+.. |.+ +.=+..|+ .|+|.|||+=+-
T Consensus 24 m~d~fNrl~~tC~-~KCI~~~--y~E------aeLtKGE~---------~CiDRCVaKy~~ 66 (90)
T KOG3480|consen 24 MSDMFNRLTNTCH-KKCIPPR--YKE------AELTKGES---------VCIDRCVAKYLD 66 (90)
T ss_pred HHHHHHHHHHHHH-HHhCCcc--ccc------ccccCchh---------hHHHHHHHHHHH
Confidence 3566666777777 5776543 321 11122333 599999997543
No 15
>PF01579 DUF19: Domain of unknown function (DUF19); InterPro: IPR002542 This presumed domain has no known function. It is found in one or two copies in several Caenorhabditis elegans proteins. The domain is roughly 130 amino acids long and contains 12 conserved cysteines, which suggests that it is an extracellular domain and that these cysteines form six intra-domain disulphide bridges.
Probab=20.85 E-value=1.3e+02 Score=20.64 Aligned_cols=45 Identities=18% Similarity=0.433 Sum_probs=32.9
Q ss_pred cCCchHHHHHhhhh-hhhhhH-----------------------HHHHHHHHHhhhc-CCCCCCChhhHH
Q psy15525 48 LVDPQVTLREKCSE-AHCTKY-----------------------LDKLQQCNDRVNS-KQNTTESCYEEL 92 (112)
Q Consensus 48 ~vDP~~~LrEeC~~-~~C~~~-----------------------~~~yeeC~eRV~s-~~~t~E~C~eE~ 92 (112)
.++-+..|...|.+ ..|... ...|..|..++.+ .....-.|+..|
T Consensus 33 ~~~~~~~~~~~C~~~~~C~~~~~C~~~~~~~~~~~~~C~~~~~~~~~f~~C~~kl~~~~~~~~~~C~~~~ 102 (160)
T PF01579_consen 33 NPEDFKKLNKLCEEAKSCFSSLKCKEAEKMKNSIESFCDFIEFYNSEFSDCIKKLYSEKDSKNSECLKDF 102 (160)
T ss_pred CHHHHHHHHHHhhCHHHHhccCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCchhHhh
Confidence 34446777888887 777777 7788899999988 344566787766
Done!