Query psy15525
Match_columns 112
No_of_seqs 103 out of 222
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 23:35:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tgu_H Mitochondrial ubiquinol 100.0 7.1E-36 2.4E-40 202.6 7.5 69 44-112 8-77 (77)
2 1pp9_H Ubiquinol-cytochrome C 100.0 1.8E-35 6.2E-40 201.0 7.3 68 45-112 10-78 (78)
3 3cx5_F Cytochrome B-C1 complex 100.0 4.2E-32 1.5E-36 202.7 5.1 67 46-112 71-146 (146)
4 2lql_A Coiled-coil-helix-coile 46.4 22 0.00074 24.6 3.7 39 63-104 60-98 (113)
5 2lql_A Coiled-coil-helix-coile 34.0 13 0.00044 25.7 0.9 40 63-102 36-75 (113)
6 1q8h_A Osteocalcin; helix-turn 26.6 47 0.0016 20.3 2.5 26 46-71 10-36 (49)
7 2pa8_L DNA-directed RNA polyme 22.7 73 0.0025 20.9 3.1 29 46-74 60-90 (92)
8 1vzm_A Osteocalcin; calcium-bi 22.5 44 0.0015 20.1 1.7 24 48-71 6-30 (45)
9 3h0g_K DNA-directed RNA polyme 20.4 1.1E+02 0.0039 21.2 3.8 32 46-77 77-110 (123)
10 1xpp_A TA1416, DNA-directed RN 14.3 1.4E+02 0.0048 20.5 3.0 30 51-80 74-105 (115)
No 1
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Probab=100.00 E-value=7.1e-36 Score=202.56 Aligned_cols=69 Identities=51% Similarity=0.934 Sum_probs=66.5
Q ss_pred cccccCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525 44 EEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK 112 (112)
Q Consensus 44 ~eEE~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK 112 (112)
||||+|||++.||++|++ ++|++++++|++|++||+++++++|||+|||||||||+|||||||||++||
T Consensus 8 eEeE~vDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~eE~Fd~~hCvD~CvapkLF~~LK 77 (77)
T 3tgu_H 8 EEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK 77 (77)
T ss_dssp -CCCCCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCCCCSHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred ccccccCHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcHHHHHhcC
Confidence 457899999999999998 899999999999999999999999999999999999999999999999998
No 2
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=100.00 E-value=1.8e-35 Score=200.98 Aligned_cols=68 Identities=50% Similarity=0.953 Sum_probs=64.3
Q ss_pred ccccCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525 45 EEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK 112 (112)
Q Consensus 45 eEE~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK 112 (112)
|||+|||++.||++|++ ++|++++++|++|++||+|++++++||+|||||||||||||||||||++||
T Consensus 10 eEE~vDp~~~l~e~C~~~~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCvD~CvapkLf~~LK 78 (78)
T 1pp9_H 10 EEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK 78 (78)
T ss_dssp ---CCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred cccccChHHHHHHHHhcchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence 47899999999999999 999999999999999999999999999999999999999999999999998
No 3
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=99.97 E-value=4.2e-32 Score=202.66 Aligned_cols=67 Identities=28% Similarity=0.497 Sum_probs=62.2
Q ss_pred cccCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCC--------CCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525 46 EELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQ--------NTTESCYEELIDYAHCVDHCVAHDIHKYLK 112 (112)
Q Consensus 46 EE~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~--------~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK 112 (112)
||+|||++.||++|++ ++|++++++|++|++||++++ .+++||++||||||||||||||||||++||
T Consensus 71 EE~vDPk~~LrEeC~~s~~C~~~~~~ydeCveRV~s~~e~~G~~~~~~~EdC~eE~Fdl~hCvD~CvAPKLF~~LK 146 (146)
T 3cx5_F 71 EEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK 146 (146)
T ss_dssp --CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred ccccChHHHHHHHhcCCchhHHHHHHHHHHHHHHHccccccccccCCCCcccHHHHHHHHhhHhhccCHHHHHhcC
Confidence 6799999999999998 999999999999999999853 279999999999999999999999999998
No 4
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=46.40 E-value=22 Score=24.57 Aligned_cols=39 Identities=13% Similarity=0.534 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhh
Q psy15525 63 HCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVA 104 (112)
Q Consensus 63 ~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvA 104 (112)
+|..-...|..|.+.=+. .-+.|..+.-.|..|+.+-..
T Consensus 60 ~C~~ef~~y~~CL~~n~~---~~~~Cr~~~~~f~~Cae~v~~ 98 (113)
T 2lql_A 60 ACAQPFEAFEECLRQNEA---AVGNCAEHMRRFLQCAEQVQP 98 (113)
T ss_dssp HTHHHHHHHHHHHHHCTT---CTTTCCSHHHHHHHHHTTC--
T ss_pred HhHHHHHHHHHHHHHccc---cHHHHHHHHHHHHHHHHHhcc
Confidence 345678889999977332 347899999999999876543
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=33.98 E-value=13 Score=25.71 Aligned_cols=40 Identities=13% Similarity=0.392 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhh
Q psy15525 63 HCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102 (112)
Q Consensus 63 ~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~C 102 (112)
+|.......-.|..=|..=.+=..+|.++|-.|+.|+|.-
T Consensus 36 ~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n 75 (113)
T 2lql_A 36 DCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQN 75 (113)
T ss_dssp TCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 4666666666665321111123579999999999999763
No 6
>1q8h_A Osteocalcin; helix-turn-helix-turn-helix, paper-CLIP, hydroxyapatite CRYS surface binding protein, calcium binding protein; HET: CGU; 2.00A {Sus scrofa} SCOP: g.32.1.1 PDB: 1q3m_A*
Probab=26.57 E-value=47 Score=20.26 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=19.7
Q ss_pred cccCCchHHHHHhhhh-hhhhhHHHHH
Q psy15525 46 EELVDPQVTLREKCSE-AHCTKYLDKL 71 (112)
Q Consensus 46 EE~vDP~~~LrEeC~~-~~C~~~~~~y 71 (112)
+-..+|+..+||.|+. +-|-.+-.++
T Consensus 10 ~~~k~plE~~rEvCE~~~~C~~~A~~~ 36 (49)
T 1q8h_A 10 APYPDPLEPRREVCELNPDCDELADHI 36 (49)
T ss_dssp ---CCTTHHHHHHHHHSHHHHHHHHHH
T ss_pred ccCCChhHHHHHHhccchhHHHHHHHH
Confidence 3457999999999998 8898876654
No 7
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=22.71 E-value=73 Score=20.87 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=24.5
Q ss_pred cccCCchHHHHHhhhh--hhhhhHHHHHHHH
Q psy15525 46 EELVDPQVTLREKCSE--AHCTKYLDKLQQC 74 (112)
Q Consensus 46 EE~vDP~~~LrEeC~~--~~C~~~~~~yeeC 74 (112)
....+|.++|++.|.. ..|..+...|+.-
T Consensus 60 ~~~~~p~~al~~a~~~l~~~~~~~~~~f~~~ 90 (92)
T 2pa8_L 60 DGSITPKDALLKAIENIRGMTSHYIDEIKGL 90 (92)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999998 7799999888763
No 8
>1vzm_A Osteocalcin; calcium-binding protein, bone GLA protein, BGP, hydroxyapatite, gamma carboxyl glutamic acid, vitamin K, bone, mineralization; HET: CGU; 1.4A {Argyrosomus regius}
Probab=22.49 E-value=44 Score=20.08 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=19.8
Q ss_pred cCCchHHHHHhhhh-hhhhhHHHHH
Q psy15525 48 LVDPQVTLREKCSE-AHCTKYLDKL 71 (112)
Q Consensus 48 ~vDP~~~LrEeC~~-~~C~~~~~~y 71 (112)
..+|+..+||.|+. +-|-.+-.++
T Consensus 6 ~k~p~E~~rEvCE~~~~C~~~A~~~ 30 (45)
T 1vzm_A 6 TLAQTESLREVCETNMACDEMADAQ 30 (45)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcChhHHHHHHhccchhHHHHHHHH
Confidence 45799999999998 8898876654
No 9
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.43 E-value=1.1e+02 Score=21.25 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=26.0
Q ss_pred cccCCchHHHHHhhhh--hhhhhHHHHHHHHHHh
Q psy15525 46 EELVDPQVTLREKCSE--AHCTKYLDKLQQCNDR 77 (112)
Q Consensus 46 EE~vDP~~~LrEeC~~--~~C~~~~~~yeeC~eR 77 (112)
+...+|+++|++.|.. ..|..+...|+.=.++
T Consensus 77 ~~~~~p~eaL~~al~~L~~~~~~l~~~F~~~~~~ 110 (123)
T 3h0g_K 77 VEDCSPKQVIVDAAKSLITHLEEIKVNFMREWEL 110 (123)
T ss_dssp CSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999998 7799999988764443
No 10
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=14.28 E-value=1.4e+02 Score=20.53 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=27.2
Q ss_pred chHHHHHhhhh--hhhhhHHHHHHHHHHhhhc
Q psy15525 51 PQVTLREKCSE--AHCTKYLDKLQQCNDRVNS 80 (112)
Q Consensus 51 P~~~LrEeC~~--~~C~~~~~~yeeC~eRV~s 80 (112)
|.++|++.|.. ..|..+...|+.-.++.++
T Consensus 74 p~eaL~~al~~L~~~~~~l~~~f~~a~~~~~~ 105 (115)
T 1xpp_A 74 PQSAIKRAVRKLSKLYEDLGTQFQKEFQRYES 105 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 99999999998 7899999999998888765
Done!