RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15525
         (112 letters)



>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1,
           membrane protein, heme protein, rieske iron protein,
           cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL
           PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H*
           1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H*
           1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H*
           2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
          Length = 78

 Score = 86.5 bits (214), Expect = 4e-24
 Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 44  EEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
           EEEELVDP  T+RE+C +   C K  ++L+ C++RV+S+  T E C EEL+D+ H  DHC
Sbjct: 9   EEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHC 68

Query: 103 VAHDIHKYLK 112
           VAH +   LK
Sbjct: 69  VAHKLFNSLK 78


>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex
           III subunit VIII...; cytochrome BC1, membrane protein,
           heme protein, rieske iron protein; HET: HEM WF3 UQ CDL
           PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H*
           3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H*
           3l74_H* 3l75_H* 3l70_H*
          Length = 77

 Score = 86.1 bits (213), Expect = 8e-24
 Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 44  EEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
           EEEELVDP  T+RE C +   C K  ++L+ C+ RV+S+ +T E C EEL D+ H  DHC
Sbjct: 8   EEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHC 67

Query: 103 VAHDIHKYLK 112
           VAH +   LK
Sbjct: 68  VAHKLFNKLK 77


>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
           complex, cytochrome BC1 complex,
           mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
           HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
           cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
           1p84_F* 2ibz_H* 1kyo_F*
          Length = 146

 Score = 59.1 bits (142), Expect = 1e-12
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 44  EEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNT--------TESCYEELID 94
           EEEE+ D    LRE           +   ++C +RV  +Q           E C EE   
Sbjct: 69  EEEEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFH 128

Query: 95  YAHCVDHCVAHDIHKYLK 112
             H +D   A  +   LK
Sbjct: 129 LQHYLDTATAPRLFDKLK 146


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 1.4
 Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 4/23 (17%)

Query: 82  QNTTESCYEELID----YAHCVD 100
           Q  T+  +EEL D    Y   V 
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVG 185


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0611    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,716,531
Number of extensions: 86308
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 17
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)