RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15525
         (112 letters)



>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1
           complex (Ubiquinol-cytochrome c reductase) {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 66

 Score = 81.3 bits (201), Expect = 1e-22
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 48  LVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE+C +   C K  ++L+ C++RV+S+  T E C EEL+D+ H  DHCVAH 
Sbjct: 1   LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 60

Query: 107 IHKYLK 112
           +   LK
Sbjct: 61  LFNSLK 66


>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome
           bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 74

 Score = 69.1 bits (169), Expect = 1e-17
 Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 48  LVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNT--------TESCYEELIDYAHC 98
           + D    LRE           +   ++C +RV  +Q           E C EE     H 
Sbjct: 1   VTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHY 60

Query: 99  VDHCVAHDIHKYLK 112
           +D   A  +   LK
Sbjct: 61  LDTATAPRLFDKLK 74


>d2fj8a1 g.3.13.1 (A:64-122) Bowman-Birk inhibitor, BBI {Barley
          (Hordeum vulgare) [TaxId: 4513]}
          Length = 59

 Score = 26.7 bits (59), Expect = 0.18
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 59 CSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCV 99
          C +A CT+      +C D V     T ++C       +  V
Sbjct: 6  CDKAICTRSNPPTCRCVDEVKKCAPTCKTCLPSRSRPSRRV 46


>d1c2aa1 g.3.13.1 (A:4-64) Bowman-Birk inhibitor, BBI {Barley
          (Hordeum vulgare) [TaxId: 4513]}
          Length = 61

 Score = 25.5 bits (56), Expect = 0.59
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 59 CSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCV 99
          C EA CT+ +  +  C D V     T +SC   + D +  +
Sbjct: 7  CDEAVCTRSIPPICTCMDEVFECPKTCKSCGPSMGDPSRRI 47


>d1pi2a_ g.3.13.1 (A:) Bowman-Birk inhibitor, BBI {Soybean
          (Glycine max), PI-II [TaxId: 3847]}
          Length = 61

 Score = 23.3 bits (50), Expect = 3.3
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 59 CSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCV 99
          C    CT+ +     C DR+NS  +  +SC         C 
Sbjct: 6  CDLCMCTRSMPPQCSCEDRINSCHSDCKSCMCTRSQPGQCR 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,807
Number of extensions: 18662
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 17
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)