Query psy15526
Match_columns 71
No_of_seqs 136 out of 1050
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:36:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14147 heat shock protein Gr 100.0 1.4E-31 3.1E-36 176.7 7.8 71 1-71 101-171 (172)
2 PRK14148 heat shock protein Gr 100.0 1.8E-31 4E-36 179.1 7.9 71 1-71 125-195 (195)
3 PRK14151 heat shock protein Gr 100.0 1.6E-31 3.5E-36 177.0 7.5 71 1-71 106-176 (176)
4 COG0576 GrpE Molecular chapero 100.0 2.2E-31 4.8E-36 178.3 7.6 71 1-71 122-192 (193)
5 PRK14153 heat shock protein Gr 100.0 4.3E-31 9.4E-36 177.2 8.1 71 1-71 118-188 (194)
6 PRK14150 heat shock protein Gr 100.0 4.6E-31 9.9E-36 176.8 8.1 70 1-70 124-193 (193)
7 PRK10325 heat shock protein Gr 100.0 4.8E-31 1E-35 177.2 7.7 71 1-71 125-195 (197)
8 PRK14161 heat shock protein Gr 100.0 4.6E-31 9.9E-36 175.2 7.2 71 1-71 106-177 (178)
9 PRK14140 heat shock protein Gr 100.0 6.4E-31 1.4E-35 176.1 7.6 70 1-70 122-191 (191)
10 PRK14141 heat shock protein Gr 100.0 1E-30 2.2E-35 177.0 8.0 70 1-70 122-191 (209)
11 PRK14144 heat shock protein Gr 100.0 1.3E-30 2.9E-35 175.4 8.2 71 1-71 129-199 (199)
12 PRK14145 heat shock protein Gr 100.0 1.1E-30 2.5E-35 175.4 7.8 70 1-70 127-196 (196)
13 PRK14155 heat shock protein Gr 100.0 1.3E-30 2.9E-35 176.4 7.9 71 1-71 101-172 (208)
14 PRK14163 heat shock protein Gr 100.0 1.3E-30 2.9E-35 177.0 7.6 71 1-71 118-188 (214)
15 PRK14158 heat shock protein Gr 100.0 1.4E-30 3E-35 174.8 7.0 70 1-70 124-194 (194)
16 PRK14139 heat shock protein Gr 100.0 2.2E-30 4.8E-35 172.8 7.4 70 1-71 115-184 (185)
17 PRK14143 heat shock protein Gr 100.0 2.7E-30 5.9E-35 177.6 7.5 71 1-71 153-223 (238)
18 PRK14159 heat shock protein Gr 100.0 2.1E-30 4.5E-35 171.8 6.6 69 1-70 108-176 (176)
19 PRK14162 heat shock protein Gr 100.0 3.1E-30 6.7E-35 173.1 7.3 70 1-70 124-194 (194)
20 PRK14157 heat shock protein Gr 100.0 4.7E-30 1E-34 175.4 7.9 71 1-71 155-225 (227)
21 PRK14146 heat shock protein Gr 100.0 5.8E-30 1.3E-34 173.9 7.8 71 1-71 139-213 (215)
22 PRK14160 heat shock protein Gr 100.0 6.6E-30 1.4E-34 173.3 7.7 69 1-70 143-211 (211)
23 PF01025 GrpE: GrpE; InterPro 100.0 7.1E-30 1.5E-34 164.9 7.3 70 1-70 96-165 (165)
24 PRK14149 heat shock protein Gr 100.0 9.8E-30 2.1E-34 170.4 8.1 70 1-71 121-190 (191)
25 PRK14154 heat shock protein Gr 100.0 1.5E-29 3.2E-34 171.3 7.6 69 1-69 138-207 (208)
26 cd00446 GrpE GrpE is the adeni 100.0 4.9E-29 1.1E-33 158.4 7.7 68 1-68 70-137 (137)
27 PRK14142 heat shock protein Gr 100.0 5.6E-29 1.2E-33 169.7 7.9 71 1-71 112-183 (223)
28 PRK14164 heat shock protein Gr 100.0 3.1E-28 6.7E-33 165.8 7.5 69 1-71 149-217 (218)
29 PRK14156 heat shock protein Gr 99.9 6.6E-28 1.4E-32 160.0 7.0 68 1-70 109-177 (177)
30 KOG3003|consensus 99.9 4.2E-26 9E-31 156.2 6.5 71 1-71 162-232 (236)
31 PF08823 PG_binding_2: Putativ 55.7 6.5 0.00014 22.6 1.0 33 2-35 17-49 (74)
32 COG4043 Preprotein translocase 55.2 6 0.00013 24.6 0.8 26 2-27 56-81 (111)
33 COG5440 Uncharacterized conser 50.6 62 0.0013 21.5 5.0 46 1-53 5-50 (161)
34 PF01849 NAC: NAC domain; Int 50.0 9.5 0.00021 20.6 1.0 17 4-20 2-18 (58)
35 PF04566 RNA_pol_Rpb2_4: RNA p 47.6 20 0.00043 19.9 2.1 14 54-67 48-61 (63)
36 PF01471 PG_binding_1: Putativ 45.2 5.7 0.00012 20.7 -0.4 32 4-36 6-37 (57)
37 COG3710 CadC DNA-binding winge 40.9 26 0.00057 22.4 2.2 22 43-64 89-110 (148)
38 COG2012 RPB5 DNA-directed RNA 39.6 48 0.001 19.6 2.9 49 3-58 23-72 (80)
39 CHL00072 chlL photochlorophyll 38.9 26 0.00056 24.5 2.1 25 3-27 257-281 (290)
40 PF02037 SAP: SAP domain; Int 36.9 44 0.00096 16.1 2.2 17 1-17 4-20 (35)
41 PF14814 UB2H: Bifunctional tr 35.6 89 0.0019 17.9 5.1 43 1-59 7-52 (85)
42 smart00360 RRM RNA recognition 34.9 17 0.00037 18.0 0.5 19 2-20 9-28 (71)
43 PRK00407 hypothetical protein; 34.2 15 0.00032 23.3 0.2 13 21-33 99-111 (139)
44 PF00076 RRM_1: RNA recognitio 33.6 41 0.00089 17.1 1.9 61 1-62 10-70 (70)
45 PF11062 DUF2863: Protein of u 33.3 22 0.00048 26.8 1.0 32 3-34 340-371 (398)
46 PF07927 YcfA: YcfA-like prote 33.2 37 0.0008 17.5 1.7 20 4-23 2-21 (56)
47 PF06890 Phage_Mu_Gp45: Bacter 32.8 1.2E+02 0.0025 20.0 4.3 52 8-68 31-82 (162)
48 COG1671 Uncharacterized protei 32.2 57 0.0012 21.4 2.7 24 6-29 77-100 (150)
49 COG1945 Pyruvoyl-dependent arg 31.2 81 0.0017 21.0 3.3 48 4-52 23-73 (163)
50 smart00513 SAP Putative DNA-bi 30.9 56 0.0012 15.6 2.0 16 1-16 4-19 (35)
51 COG2815 Uncharacterized protei 30.7 1.6E+02 0.0034 21.2 5.0 53 1-53 170-225 (303)
52 PF03683 UPF0175: Uncharacteri 30.0 50 0.0011 18.6 1.9 18 1-19 46-63 (76)
53 PF08059 SEP: SEP domain; Int 29.2 46 0.00099 19.0 1.7 17 47-63 1-17 (75)
54 PF04914 DltD_C: DltD C-termin 28.0 72 0.0016 20.1 2.6 29 2-30 77-105 (130)
55 PF13393 tRNA-synt_His: Histid 27.3 64 0.0014 22.2 2.5 19 2-20 16-34 (311)
56 PRK09570 rpoH DNA-directed RNA 27.3 1.2E+02 0.0025 17.8 3.2 48 1-55 18-66 (79)
57 PF07717 OB_NTP_bind: Oligonuc 27.1 60 0.0013 19.0 2.0 17 4-20 1-17 (114)
58 PF11691 DUF3288: Protein of u 26.4 46 0.00099 20.1 1.4 16 2-17 47-62 (90)
59 COG0292 RplT Ribosomal protein 26.3 56 0.0012 20.6 1.8 16 1-16 74-89 (118)
60 PF10816 DUF2760: Domain of un 25.9 1.5E+02 0.0032 19.0 3.7 60 4-66 44-124 (125)
61 PF03793 PASTA: PASTA domain; 25.4 1.1E+02 0.0024 15.8 4.6 15 1-15 9-23 (63)
62 PF12949 HeH: HeH/LEM domain; 25.3 37 0.0008 16.9 0.7 15 2-16 5-19 (35)
63 smart00553 SEP Domain present 25.2 57 0.0012 19.5 1.7 19 45-63 5-23 (93)
64 TIGR03081 metmalonyl_epim meth 24.7 1.4E+02 0.0031 16.8 4.9 43 4-50 84-127 (128)
65 PF05194 UreE_C: UreE urease a 24.6 26 0.00056 20.2 0.1 25 4-29 42-66 (87)
66 PF14291 DUF4371: Domain of un 24.6 55 0.0012 22.1 1.7 26 2-27 200-225 (235)
67 PRK12294 hisZ ATP phosphoribos 24.3 83 0.0018 22.1 2.6 26 2-27 13-39 (272)
68 PF05893 LuxC: Acyl-CoA reduct 24.3 1.2E+02 0.0025 22.4 3.4 26 4-29 358-383 (399)
69 COG1724 Predicted RNA binding 24.1 92 0.002 17.8 2.3 23 1-23 7-29 (66)
70 PRK12293 hisZ ATP phosphoribos 23.6 85 0.0018 22.0 2.5 20 2-21 25-44 (281)
71 PF01191 RNA_pol_Rpb5_C: RNA p 23.5 35 0.00076 19.7 0.5 45 2-53 16-61 (74)
72 PRK09919 anti-adapter protein 23.4 95 0.0021 19.5 2.5 22 41-62 39-60 (114)
73 cd03400 Band_7_1 A subgroup of 23.1 26 0.00057 20.9 -0.1 33 2-34 87-121 (124)
74 PRK14113 urease accessory prot 23.0 60 0.0013 21.0 1.6 23 5-28 113-135 (152)
75 COG3640 CooC CO dehydrogenase 22.9 41 0.00089 23.9 0.8 31 6-37 21-51 (255)
76 PF05657 DUF806: Protein of un 22.9 2E+02 0.0044 18.0 4.7 34 3-36 82-115 (123)
77 PF09435 DUF2015: Fungal prote 22.9 88 0.0019 20.0 2.3 19 7-28 110-128 (128)
78 PTZ00032 60S ribosomal protein 22.8 21 0.00045 24.7 -0.6 10 51-60 188-197 (211)
79 PHA03294 envelope glycoprotein 22.6 93 0.002 25.6 2.8 23 24-51 765-791 (835)
80 PRK05134 bifunctional 3-demeth 22.1 70 0.0015 20.9 1.8 26 3-28 186-211 (233)
81 PLN02396 hexaprenyldihydroxybe 21.7 68 0.0015 23.0 1.8 30 2-31 269-298 (322)
82 PF02302 PTS_IIB: PTS system, 21.7 58 0.0013 18.1 1.2 20 1-20 15-34 (90)
83 COG1710 Uncharacterized protei 21.4 1.2E+02 0.0026 19.5 2.6 20 2-21 65-84 (139)
84 PF07727 RVT_2: Reverse transc 21.3 99 0.0021 21.2 2.5 25 4-28 222-246 (246)
85 COG4226 HicB Predicted nucleas 21.2 40 0.00087 21.1 0.5 31 4-34 52-86 (111)
86 TIGR00443 hisZ_biosyn_reg ATP 20.9 1E+02 0.0022 21.6 2.5 20 2-21 14-33 (314)
87 PF07841 DM4_12: DM4/DM12 fami 20.8 96 0.0021 17.4 2.0 14 2-15 4-17 (82)
88 PRK12295 hisZ ATP phosphoribos 20.7 1E+02 0.0022 22.5 2.6 25 2-26 10-35 (373)
89 PF15640 Tox-MPTase4: Metallop 20.6 1.9E+02 0.0041 18.6 3.4 32 4-35 25-65 (132)
90 PRK15124 2'-5' RNA ligase; Pro 20.6 1.4E+02 0.003 19.1 3.0 25 2-29 102-126 (176)
91 COG3414 SgaB Phosphotransferas 20.1 79 0.0017 18.8 1.6 16 1-16 17-32 (93)
No 1
>PRK14147 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.4e-31 Score=176.74 Aligned_cols=71 Identities=39% Similarity=0.643 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|++.
T Consensus 101 mi~k~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~Vak~ 171 (172)
T PRK14147 101 LTYKQLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVVAKQ 171 (172)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeccCceEEeCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999984
No 2
>PRK14148 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.8e-31 Score=179.14 Aligned_cols=71 Identities=41% Similarity=0.600 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+|+||+++|||||||+|+|+|+
T Consensus 125 mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vak~ 195 (195)
T PRK14148 125 LTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIVRAAKVVIVKN 195 (195)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeeccEEEeCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PRK14151 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.6e-31 Score=177.01 Aligned_cols=71 Identities=39% Similarity=0.618 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++|||++++++++.++|+|++|+++||+++|||||||+|+|+++
T Consensus 106 mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l~dRvLRpA~V~Vak~ 176 (176)
T PRK14151 106 LTLKMFQDTLKRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVVSKA 176 (176)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEECCEEecCcEEEecCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999984
No 4
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-31 Score=178.26 Aligned_cols=71 Identities=51% Similarity=0.753 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|+.|||++|+||+++++++.++|+|+.|+|+||+++|||||||+|+|+++
T Consensus 122 m~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRVLRpA~V~Vak~ 192 (193)
T COG0576 122 MTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRPAMVKVAKK 192 (193)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeeeCCEeccceEEEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999974
No 5
>PRK14153 heat shock protein GrpE; Provisional
Probab=99.97 E-value=4.3e-31 Score=177.23 Aligned_cols=71 Identities=39% Similarity=0.646 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 118 mi~k~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 188 (194)
T PRK14153 118 MVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRPAMVSVARN 188 (194)
T ss_pred HHHHHHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEeCCEEeeCcEEEECCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999984
No 6
>PRK14150 heat shock protein GrpE; Provisional
Probab=99.97 E-value=4.6e-31 Score=176.83 Aligned_cols=70 Identities=41% Similarity=0.690 Sum_probs=68.5
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+|+||+++|||||||+|+|+|
T Consensus 124 mi~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l~drvLRpA~V~Vsk 193 (193)
T PRK14150 124 LTLKSLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLRPAMVMVSK 193 (193)
T ss_pred HHHHHHHHHHHHCCCeeeCCCCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEeCCEEecceEEEeCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 7
>PRK10325 heat shock protein GrpE; Provisional
Probab=99.97 E-value=4.8e-31 Score=177.18 Aligned_cols=71 Identities=30% Similarity=0.477 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|+++|++|||++|+|++++++++.++|+|++|+++||+++|||||||+|+|+++
T Consensus 125 m~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk~ 195 (197)
T PRK10325 125 LTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKA 195 (197)
T ss_pred HHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeccCceEEeCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999974
No 8
>PRK14161 heat shock protein GrpE; Provisional
Probab=99.97 E-value=4.6e-31 Score=175.16 Aligned_cols=71 Identities=38% Similarity=0.701 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHhCCceEeCC-CCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~-~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++ +|++|||++|||++++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 106 mi~k~l~~vL~~~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l~dRVLRpA~V~Vak~ 177 (178)
T PRK14161 106 MTKDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDRLLRPATVQVVKK 177 (178)
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEeCCEeecCceEEeCCC
Confidence 78999999999999999999 699999999999999999999999999999999999999999999999984
No 9
>PRK14140 heat shock protein GrpE; Provisional
Probab=99.97 E-value=6.4e-31 Score=176.06 Aligned_cols=70 Identities=43% Similarity=0.731 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 122 mi~k~l~~~L~k~GV~~i~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vak 191 (191)
T PRK14140 122 MVHRQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIRPSMVKVNQ 191 (191)
T ss_pred HHHHHHHHHHHHCCCEeeCCCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEeCCEEecCcEEEeCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 10
>PRK14141 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1e-30 Score=177.04 Aligned_cols=70 Identities=46% Similarity=0.834 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 122 mi~k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vsk 191 (209)
T PRK14141 122 MTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVGVAK 191 (209)
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeecccEEEECC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999997
No 11
>PRK14144 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.3e-30 Score=175.42 Aligned_cols=71 Identities=41% Similarity=0.630 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+|+||+++|||||||+|+|++.
T Consensus 129 mi~k~l~~~L~k~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vskk 199 (199)
T PRK14144 129 LTMKLFLDALQKFDVEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARVIVSTK 199 (199)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEECCEEecccEEEecCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999974
No 12
>PRK14145 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.1e-30 Score=175.43 Aligned_cols=70 Identities=39% Similarity=0.703 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 127 mi~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRPA~V~Vak 196 (196)
T PRK14145 127 LIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRPSLVKVAK 196 (196)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeeccceEEeCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 13
>PRK14155 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.3e-30 Score=176.35 Aligned_cols=71 Identities=41% Similarity=0.759 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHhCCceEeCC-CCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~-~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++ +|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 101 mi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 172 (208)
T PRK14155 101 MTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAVAAK 172 (208)
T ss_pred HHHHHHHHHHHHCCCceecCCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCEeeccceEEECCC
Confidence 78999999999999999999 899999999999999999999999999999999999999999999999983
No 14
>PRK14163 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.3e-30 Score=176.96 Aligned_cols=71 Identities=31% Similarity=0.528 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++|+||+++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 118 mi~k~l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRPA~V~Vsk~ 188 (214)
T PRK14163 118 SVAESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARVAVAEP 188 (214)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCcCCEeccCceEEECCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999984
No 15
>PRK14158 heat shock protein GrpE; Provisional
Probab=99.97 E-value=1.4e-30 Score=174.79 Aligned_cols=70 Identities=39% Similarity=0.678 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHhCCceEeCC-CCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~-~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|++ .|++|||++|||++++++++.++|+|++|+|+||+++|||||||+|+|+|
T Consensus 124 mi~k~l~~vLek~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~VsK 194 (194)
T PRK14158 124 MTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLRPAMVSVAT 194 (194)
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCEEeecceeEeCC
Confidence 78999999999999999998 79999999999999999999999999999999999999999999999986
No 16
>PRK14139 heat shock protein GrpE; Provisional
Probab=99.96 E-value=2.2e-30 Score=172.76 Aligned_cols=70 Identities=41% Similarity=0.666 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++|+|++++++ +.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 115 mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~-~~~~gtVi~V~qkGY~l~dRVLRPA~V~Vak~ 184 (185)
T PRK14139 115 LTLKQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPA-EQEPNTVVAVLQKGYTIADRVLRPALVTVAAP 184 (185)
T ss_pred HHHHHHHHHHHHCCCceeCCCCCCCChHHhheeeeecC-CCCcCEEEEEeeCCcEeCCEeccCceEEeCCC
Confidence 78999999999999999999999999999999999987 56899999999999999999999999999974
No 17
>PRK14143 heat shock protein GrpE; Provisional
Probab=99.96 E-value=2.7e-30 Score=177.65 Aligned_cols=71 Identities=34% Similarity=0.566 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 153 ~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRpA~V~Vsk~ 223 (238)
T PRK14143 153 GLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVLRHAMVKVSMG 223 (238)
T ss_pred HHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEecccceEEECCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999973
No 18
>PRK14159 heat shock protein GrpE; Provisional
Probab=99.96 E-value=2.1e-30 Score=171.80 Aligned_cols=69 Identities=39% Similarity=0.629 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|++.| +|||++|+|++++++++.++|+|++|+|+||+++|||||||+|+|+|
T Consensus 108 mi~k~l~~vL~k~Gv~~I~~~G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 176 (176)
T PRK14159 108 NTLDLFLKKLEKHGVALIKEEK-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVSVAK 176 (176)
T ss_pred HHHHHHHHHHHHCcCEecCCCC-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEeCCEeeecceeEeCC
Confidence 7899999999999999999999 69999999999999999999999999999999999999999999986
No 19
>PRK14162 heat shock protein GrpE; Provisional
Probab=99.96 E-value=3.1e-30 Score=173.09 Aligned_cols=70 Identities=39% Similarity=0.632 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecC-CCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVE-GKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~-~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|++.|++|||++|+|+++++++ +.++|+|++|+|+||+++|||||||+|+|++
T Consensus 124 mi~k~l~~vL~~~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 194 (194)
T PRK14162 124 MTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMVVVAQ 194 (194)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCCEeeecceEEeCC
Confidence 789999999999999999999999999999999999864 6889999999999999999999999999986
No 20
>PRK14157 heat shock protein GrpE; Provisional
Probab=99.96 E-value=4.7e-30 Score=175.43 Aligned_cols=71 Identities=32% Similarity=0.558 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++||||+++++++.++|+|++|+|+||+++|||||||+|+|+++
T Consensus 155 ~i~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~Vak~ 225 (227)
T PRK14157 155 AVAAKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVVVASP 225 (227)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCcCEEEEEeeCCceeCCEeccCceEEeCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999973
No 21
>PRK14146 heat shock protein GrpE; Provisional
Probab=99.96 E-value=5.8e-30 Score=173.91 Aligned_cols=71 Identities=32% Similarity=0.426 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCC----EEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYN----RVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~----rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++|+||+++++++.++|+|+.|+|+||+++| ||||||+|+|+++
T Consensus 139 mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~r~~~RvLRpA~V~Vak~ 213 (215)
T PRK14146 139 MILKEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTLRPARVRIGKP 213 (215)
T ss_pred HHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEeCCccCCeeccCceEEeCCC
Confidence 7899999999999999999999999999999999999999999999999999999999 6999999999974
No 22
>PRK14160 heat shock protein GrpE; Provisional
Probab=99.96 E-value=6.6e-30 Score=173.28 Aligned_cols=69 Identities=36% Similarity=0.564 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|++.| +|||++|+||+++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 143 mi~kql~~vL~k~GVe~I~~~G-~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY~l~dRVLRpA~V~Va~ 211 (211)
T PRK14160 143 MTVKQFKTSLEKLGVEEISTEG-EFDPNLHNAVMHVEDENYGENEIVEVFQKGYKRGDKVIRYSMVKVAN 211 (211)
T ss_pred HHHHHHHHHHHHCCCEEeCCCC-CCChHHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeeecceEEeCC
Confidence 7899999999999999999999 89999999999999999999999999999999999999999999985
No 23
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=99.96 E-value=7.1e-30 Score=164.94 Aligned_cols=70 Identities=44% Similarity=0.696 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
|++++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+++||+++|||||||+|+|+|
T Consensus 96 ~~~~~l~~~L~~~Gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V~K 165 (165)
T PF01025_consen 96 MILKQLEDILEKNGVEEIEPVGEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRLGGRVLRPAEVVVSK 165 (165)
T ss_dssp HHHHHHHHHHHTTTEEEE--TSSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEETTEEEE-EEEEEEE
T ss_pred HHHHHHHHHHHHCCCEecCCCCCCCCHHHheeheecCcCCCCcCeEEEEEecCEEECCEEeeeeEEEecC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999997
No 24
>PRK14149 heat shock protein GrpE; Provisional
Probab=99.96 E-value=9.8e-30 Score=170.37 Aligned_cols=70 Identities=46% Similarity=0.755 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.| +|||++|+|++++++++.++|+|++|+++||+++|||||||+|+|+++
T Consensus 121 mi~k~l~~vL~k~GV~~I~~~G-~FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Vak~ 190 (191)
T PRK14149 121 LTMEKLHEVLARHGIEGIECLE-EFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAKN 190 (191)
T ss_pred HHHHHHHHHHHHCCCEEeCCCC-CCChHHhheeeeecCCCCCcCEEEEEeeCCcEeCCEEeeccEEEeCCC
Confidence 7899999999999999999998 599999999999999999999999999999999999999999999984
No 25
>PRK14154 heat shock protein GrpE; Provisional
Probab=99.96 E-value=1.5e-29 Score=171.30 Aligned_cols=69 Identities=38% Similarity=0.630 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHhCCceEeCC-CCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEee
Q psy15526 1 MTDGNLKKVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGIS 69 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~-~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~ 69 (71)
||+++|.++|+++||++|++ +|++|||++|+|++++++++.++|+|++|+|+||+++|||||||+|+|+
T Consensus 138 mi~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l~dRVLRPA~V~Va 207 (208)
T PRK14154 138 LTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVIVA 207 (208)
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEEecceEEEeC
Confidence 68999999999999999999 6999999999999999999999999999999999999999999999997
No 26
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=99.96 E-value=4.9e-29 Score=158.41 Aligned_cols=68 Identities=49% Similarity=0.744 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEe
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGI 68 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V 68 (71)
|++++|.++|+++||++|++.|++|||++|+|++++++++.++|+|++|+++||+++|||||||+|+|
T Consensus 70 ~i~~~l~~~L~~~Gv~~i~~~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V 137 (137)
T cd00446 70 MTLKQLLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLRPAMVVV 137 (137)
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEECCEEecccEeEC
Confidence 68899999999999999999999999999999999999999999999999999999999999999987
No 27
>PRK14142 heat shock protein GrpE; Provisional
Probab=99.96 E-value=5.6e-29 Score=169.71 Aligned_cols=71 Identities=31% Similarity=0.502 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCC-CCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKE-ANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~-~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++||||+++++++.+ +++|++|+++||+++|||||||+|+|+|.
T Consensus 112 ~I~kqL~~iLek~GVe~I~~~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~ 183 (223)
T PRK14142 112 SVADKLDSALTGLGLVAFGAEGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDT 183 (223)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCCEeccCceEEECCC
Confidence 689999999999999999999999999999999999887754 68999999999999999999999999984
No 28
>PRK14164 heat shock protein GrpE; Provisional
Probab=99.95 E-value=3.1e-28 Score=165.78 Aligned_cols=69 Identities=28% Similarity=0.452 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|++.|++|||++||||+++++++ .++|++|+|+||++||||||||+|+|++.
T Consensus 149 ~i~~~l~~vL~k~Gve~I~~~Ge~FDP~~HEAV~~~~~~~--~~~V~~V~qkGY~l~dRVLRPA~V~Vak~ 217 (218)
T PRK14164 149 AFSDKLTNVLAGLKVEKFGEEGDAFDPEIHEAVQDLSSGD--EKVLGTVLRKGYRMGDRVLRTAMVIIADP 217 (218)
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeecCCC--CCEeeEEeeCCcEECCEeccCceEEeCCC
Confidence 5789999999999999999999999999999999998754 68999999999999999999999999974
No 29
>PRK14156 heat shock protein GrpE; Provisional
Probab=99.95 E-value=6.6e-28 Score=160.01 Aligned_cols=68 Identities=31% Similarity=0.502 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecC-CCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVE-GKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~-~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|++. +|||++|+|+++++++ +.++|+|++|+|+||+++|||||||+|+|++
T Consensus 109 mi~k~l~~~L~~~GV~~i~~~--~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va~ 177 (177)
T PRK14156 109 MVQESLIQALKEEGVEEVAVD--SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYKLHERLLRPAMVVVYN 177 (177)
T ss_pred HHHHHHHHHHHHCCCeecCCC--CCChhHhhcceeecCCCCCCcCEEEEEeeCCcEeCCEEeecceeEeCC
Confidence 789999999999999999985 9999999999999854 5899999999999999999999999999985
No 30
>KOG3003|consensus
Probab=99.93 E-value=4.2e-26 Score=156.15 Aligned_cols=71 Identities=58% Similarity=0.960 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|.++|++..+|+|++|||+.|||+.++++...++|||..|.+.||++|||+||||+|.|+++
T Consensus 162 mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k~Gy~L~~R~IRPA~VgV~~~ 232 (236)
T KOG3003|consen 162 MTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYKLNGRVIRPAMVGVVKG 232 (236)
T ss_pred HHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEeccCcccCCeeechhheeeecC
Confidence 68999999999999999999999999999999999998889999999999999999999999999999874
No 31
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=55.70 E-value=6.5 Score=22.60 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEE
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFE 35 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~ 35 (71)
+.+.+.+.|.++|.-.-.+.|. ||...++|...
T Consensus 17 ~~~evq~~L~~lGyy~g~~~g~-~d~a~~~Al~~ 49 (74)
T PF08823_consen 17 VAREVQEALKRLGYYKGEADGV-WDEATEDALRA 49 (74)
T ss_pred HHHHHHHHHHHcCCccCCCCCc-ccHHHHHHHHH
Confidence 3578899999999966555555 99999998753
No 32
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.20 E-value=6 Score=24.64 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCc
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDP 27 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp 27 (71)
.++.|.++|++.|++.+.|.+..|+-
T Consensus 56 ~Y~tF~~mlreepiE~v~p~~~S~ee 81 (111)
T COG4043 56 VYDTFEEMLREEPIENVLPDVPSFEE 81 (111)
T ss_pred ehhHHHHHHHhcChhhhCCCCccHHH
Confidence 47899999999999999998776664
No 33
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=50.63 E-value=62 Score=21.49 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIG 53 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~G 53 (71)
+..+++.+-|...|.-...+.-+ |..+|=++. -.+.|.++.|+|+-
T Consensus 5 ~~d~~I~~WL~EeG~~~~kv~~~--na~fH~~v~-----~P~~~~~i~VI~p~ 50 (161)
T COG5440 5 DSDNMILDWLAEEGNVSVKVPDE--NAPFHFVVK-----PPTGGKVISVIQPP 50 (161)
T ss_pred hHHHHHHHHHHHhCceeeccCCC--CCceeEEec-----CCCCCceEEEEecC
Confidence 35688999999999999887422 334555552 12345888888874
No 34
>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation. The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.
Probab=49.99 E-value=9.5 Score=20.57 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=8.2
Q ss_pred HHHHHHHHhCCceEeCC
Q psy15526 4 GNLKKVFKRHGLEPINP 20 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~ 20 (71)
+++..+|+++|+++|+-
T Consensus 2 kk~~~~l~klgl~~i~~ 18 (58)
T PF01849_consen 2 KKLQKMLKKLGLKEIPG 18 (58)
T ss_dssp ------GHHCT-EEETT
T ss_pred HHHHHHHHHcCCcccCC
Confidence 57889999999988853
No 35
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=47.62 E-value=20 Score=19.88 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=10.1
Q ss_pred eEeCCEEeeeeEEE
Q psy15526 54 YKLYNRVIRPALVG 67 (71)
Q Consensus 54 y~~~~rvlRpA~V~ 67 (71)
|.-.||++||-.|+
T Consensus 48 ~tD~GR~~RPL~vV 61 (63)
T PF04566_consen 48 NTDAGRLCRPLFVV 61 (63)
T ss_dssp E-SSCEEEEEEEEE
T ss_pred EccCCcccceeEEe
Confidence 34579999997764
No 36
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=45.23 E-value=5.7 Score=20.71 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCceEeCCCCCCCCcccCeeeEEE
Q psy15526 4 GNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQ 36 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~ 36 (71)
..+...|.++|..+....| .||+..-+||...
T Consensus 6 ~~lq~~L~~~gy~~~~~~g-~~~~~t~~Av~~f 37 (57)
T PF01471_consen 6 KALQQYLNRLGYYPGPVDG-IFDPETREAVKAF 37 (57)
T ss_dssp HHHHHHHHHTTTT-SSTTS-BSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCC-CcCHHHHHHHHHH
Confidence 4678889999988554444 5999998888643
No 37
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=40.88 E-value=26 Score=22.40 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.5
Q ss_pred CCeEEEEEecCeEeCCEEeeee
Q psy15526 43 ANTVVVVSKIGYKLYNRVIRPA 64 (71)
Q Consensus 43 ~~~I~~v~~~Gy~~~~rvlRpA 64 (71)
..-|..|-++||++.+.+...+
T Consensus 89 ~~~I~TvPrrGyk~~~~v~~~~ 110 (148)
T COG3710 89 HRLIATVPRRGYKFTADVIIII 110 (148)
T ss_pred ceEEEEeCCcceEEecceEEec
Confidence 4459999999999999887765
No 38
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=39.62 E-value=48 Score=19.61 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCceEeCCC-CCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCC
Q psy15526 3 DGNLKKVFKRHGLEPINPL-GEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYN 58 (71)
Q Consensus 3 ~~~l~~~L~~~gv~~i~~~-G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~ 58 (71)
.++..++|+++|+++-.-. =..=||-. . ..++..|.|++++|+-...+.
T Consensus 23 ~eE~~~vLk~l~i~~~qLPkI~~~DPva-~------~lgak~GdvVkIvRkS~TaGe 72 (80)
T COG2012 23 EEEAKEVLKELGIEPEQLPKIKASDPVA-K------ALGAKPGDVVKIVRKSPTAGE 72 (80)
T ss_pred HHHHHHHHHHhCCCHHHCCcccccChhH-H------HccCCCCcEEEEEecCCCCCc
Confidence 3567889999998775542 12234421 1 235678999999999876554
No 39
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=38.90 E-value=26 Score=24.46 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCceEeCCCCCCCCc
Q psy15526 3 DGNLKKVFKRHGLEPINPLGEKFDP 27 (71)
Q Consensus 3 ~~~l~~~L~~~gv~~i~~~G~~FDp 27 (71)
-++|.+++.++|+.+|.-.|++-|-
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (290)
T CHL00072 257 DRELFSLLSDFYLNPIGNEGQKNDQ 281 (290)
T ss_pred HHHHHHHHHHhccCCCccccccccc
Confidence 4689999999999999999886553
No 40
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=36.95 E-value=44 Score=16.12 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHhCCceE
Q psy15526 1 MTDGNLKKVFKRHGLEP 17 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~ 17 (71)
|...+|.+.|+++|+..
T Consensus 4 l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 4 LTVAELKEELKERGLST 20 (35)
T ss_dssp SHHHHHHHHHHHTTS-S
T ss_pred CcHHHHHHHHHHCCCCC
Confidence 56789999999999753
No 41
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=35.64 E-value=89 Score=17.90 Aligned_cols=43 Identities=12% Similarity=0.343 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHhCCceEeCC---CCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCE
Q psy15526 1 MTDGNLKKVFKRHGLEPINP---LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNR 59 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~---~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~r 59 (71)
+..++|.+-|+.+|..+... .|+ | .-.+.-+.+.++||.+.|.
T Consensus 7 ls~~~l~~eL~~LgYR~v~~~~~pG~-y---------------~~~g~~i~i~~R~F~F~Dg 52 (85)
T PF14814_consen 7 LSPAQLEQELELLGYRKVSNPDRPGE-Y---------------SRSGNRIEIYTRGFDFPDG 52 (85)
T ss_dssp --HHHHHHHHHHTT-EE-SS--STTE-E---------------EEETTEEEEEE--EEETTC
T ss_pred cCHHHHHHHHHHcCCCcCCCCCCCeE-E---------------EEECCEEEEEECCCCCCCC
Confidence 45789999999999998864 233 1 1245678999999999875
No 42
>smart00360 RRM RNA recognition motif.
Probab=34.89 E-value=17 Score=17.99 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhCC-ceEeCC
Q psy15526 2 TDGNLKKVFKRHG-LEPINP 20 (71)
Q Consensus 2 i~~~l~~~L~~~g-v~~i~~ 20 (71)
..+.+.+.|+.+| +..+..
T Consensus 9 ~~~~l~~~f~~~g~v~~~~i 28 (71)
T smart00360 9 TEEELRELFSKFGKIESVRL 28 (71)
T ss_pred CHHHHHHHHHhhCCEeEEEE
Confidence 4567889999998 555544
No 43
>PRK00407 hypothetical protein; Provisional
Probab=34.21 E-value=15 Score=23.31 Aligned_cols=13 Identities=62% Similarity=1.043 Sum_probs=10.9
Q ss_pred CCCCCCcccCeee
Q psy15526 21 LGEKFDPNFHEAL 33 (71)
Q Consensus 21 ~G~~FDp~~heav 33 (71)
-|++|||..|+.-
T Consensus 99 ~Ge~~d~~~H~~~ 111 (139)
T PRK00407 99 WGEKFDPEIHERR 111 (139)
T ss_pred EeeecCcccccCC
Confidence 4899999999853
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=33.62 E-value=41 Score=17.14 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEee
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIR 62 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlR 62 (71)
++.++|.+.|+++|-..--..-.. ....+....-+.=.+.++-.-+-....|+.++|+.||
T Consensus 10 ~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 10 VTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp SSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 356788999999885522111111 2222233333322222222222233578899998887
No 45
>PF11062 DUF2863: Protein of unknown function (DUF2863); InterPro: IPR021292 This bacterial family of proteins have no known function.
Probab=33.34 E-value=22 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCceEeCCCCCCCCcccCeeeE
Q psy15526 3 DGNLKKVFKRHGLEPINPLGEKFDPNFHEALF 34 (71)
Q Consensus 3 ~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~ 34 (71)
..++..+|+..||+-|-.....|-|++++=..
T Consensus 340 ~~~I~a~Lre~GV~di~~~~~~f~~E~CdDCG 371 (398)
T PF11062_consen 340 LEEIEALLRECGVTDIRRHAERFPPEFCDDCG 371 (398)
T ss_pred HHHHHHHHHHcCcHHHHhhhccCCchhcccCC
Confidence 47899999999999999977789999987554
No 46
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=33.23 E-value=37 Score=17.50 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCceEeCCCCC
Q psy15526 4 GNLKKVFKRHGLEPINPLGE 23 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~~G~ 23 (71)
++|.++|+++|.+....-|.
T Consensus 2 ~el~k~L~~~G~~~~r~~GS 21 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQKGS 21 (56)
T ss_dssp HHHHHHHHHTT-EEEEEETT
T ss_pred hHHHHHHHHCCCEEecCCCC
Confidence 68999999999999865565
No 47
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=32.81 E-value=1.2e+02 Score=19.99 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=32.5
Q ss_pred HHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEe
Q psy15526 8 KVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGI 68 (71)
Q Consensus 8 ~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V 68 (71)
..|+.||+..-.|.|. +++-.....+...+-++.+--+.|++.+ |.|=+|.+
T Consensus 31 e~~q~yGftS~Pp~Ga-------~~vvl~lGG~rs~~Vvia~~d~~yR~~~--L~~GEval 82 (162)
T PF06890_consen 31 ERFQQYGFTSVPPPGA-------EAVVLFLGGDRSHGVVIAVEDRRYRPKG--LKPGEVAL 82 (162)
T ss_pred chhhcCccccCCCCCC-------eEEEEEeccCCcceEEEEeCCccccccC--CCCCcEEE
Confidence 4577888888877885 4555444455566666666666666654 44444443
No 48
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.16 E-value=57 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.1
Q ss_pred HHHHHHhCCceEeCCCCCCCCccc
Q psy15526 6 LKKVFKRHGLEPINPLGEKFDPNF 29 (71)
Q Consensus 6 l~~~L~~~gv~~i~~~G~~FDp~~ 29 (71)
|-+.|-.-|+..+++-|+.||++.
T Consensus 77 LA~~ll~kg~~v~~prGr~y~~~n 100 (150)
T COG1671 77 LASLLLDKGAAVLNPRGRLYTEEN 100 (150)
T ss_pred HHHHHHhcCCEEECCCCcccCHhH
Confidence 445677889999999999999874
No 49
>COG1945 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) [Amino acid transport and metabolism]
Probab=31.16 E-value=81 Score=21.02 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCceEeCC--CCCCCCcccCeeeEEEe-cCCCCCCeEEEEEec
Q psy15526 4 GNLKKVFKRHGLEPINP--LGEKFDPNFHEALFEQE-VEGKEANTVVVVSKI 52 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~--~G~~FDp~~heav~~~~-~~~~~~~~I~~v~~~ 52 (71)
..|+.+|.+-||+.++- +-..+=|+ .+.+..++ -++.++|.|+.++..
T Consensus 23 ~aFd~AL~dAgI~~~NLV~vSSIlPp~-~~~V~~e~gl~kl~pG~iv~~V~A 73 (163)
T COG1945 23 NAFDAALLDAGIENFNLVPVSSILPPN-CEIVDPEDGLPKLPPGAILFCVMA 73 (163)
T ss_pred HhHHHHHHhCCCcccceEEEecccCCc-ccccchhhcCCcCCCCcEEeEEEe
Confidence 56899999999999887 35545444 45554433 245789988888766
No 50
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=30.90 E-value=56 Score=15.57 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHhCCce
Q psy15526 1 MTDGNLKKVFKRHGLE 16 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~ 16 (71)
|+.++|.+.|+.+|+.
T Consensus 4 l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 4 LKVSELKDELKKRGLS 19 (35)
T ss_pred CcHHHHHHHHHHcCCC
Confidence 5678899999999975
No 51
>COG2815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.69 E-value=1.6e+02 Score=21.20 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCC--CCC-CeEEEEEecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEG--KEA-NTVVVVSKIG 53 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~--~~~-~~I~~v~~~G 53 (71)
|++.+..+.|++.|+.......-+.+-..-+++.+-+... ... .+|.-++.+|
T Consensus 170 ~t~~~A~~~L~~~G~~~~~~~~~ss~~~~G~Vis~sP~~gt~v~~gs~i~i~vs~~ 225 (303)
T COG2815 170 MTYDEASSNLKAAGLTVNSKEYVSSDRPEGEVISQSPPAGTTVNVGSKIEIVVSKG 225 (303)
T ss_pred ccHHHHHHHHHHhCCCcccccccCCCCCCCeEEEeCCCCCcccCCCCeEEEEecCC
Confidence 6788999999999999987777788888899999887433 344 4566666666
No 52
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=30.01 E-value=50 Score=18.65 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHhCCceEeC
Q psy15526 1 MTDGNLKKVFKRHGLEPIN 19 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~ 19 (71)
|....|.+.|.++||. +.
T Consensus 46 ~s~~eF~~~L~~~gI~-~~ 63 (76)
T PF03683_consen 46 MSRWEFLELLKERGIP-IN 63 (76)
T ss_pred CCHHHHHHHHHHCCCC-CC
Confidence 4577899999999998 65
No 53
>PF08059 SEP: SEP domain; InterPro: IPR012989 The SEP (after shp1, eyc and p47) domain is an eukaryotic domain, which occurs frequently and mainly in single units. Almost all proteins containing a SEP domain are succeeded closely by a UBX domain (see PDOC50033 from PROSITEDOC). The function of the SEP domain is as yet unknown but it has been proposed to act as a reversible competitive inhibitor of the lysosomal cysteine protease cathepsin L [, ]. The sructure of the SEP domain comprises a beta-sheet composed of four strands, and two alpha-helices. One side of the beta-sheet faces alpha1 and alpha2. The longer helix alpha1 packs against the four- stranded beta-sheet, where as the shorter helix alpha2 is located at one edge of the globular structure formed by alpha1 and the four stranded beta sheet. A number of highly conserved hydrophobic residues are present in the SEP domain, which are predominantly buried and form the hydrophobic core [, ]. Some proteins known to contain a SEP domain are listed below: - Eukaryotic NSFL1 cofactor p37 (or p97 cofactor p37), an adapter protein required for Golgi and endoplasmic reticulum biogenesis. It is involved in Golgi and endoplasmic reticulum maintenance during interphase and in their reassembly at the end of mitosis. - Eukaryotic NSFL1 cofactor p47 (or p97 cofactor p47), a major adaptor molecule of the cytosolic AAA-type ATPase (ATPases associated with various cellular activities) p97. p47 is required for the p97-regulated membrane reassembly of the endoplasmic reticulum (ER), the nuclear envelope and the Golgi apparatus. - Vertebrate UBX domain-containing protein 4 (UBXD4). - Plant UBA and UBX domain-containing protein. - Saccharomyces cerevisiae (Baker's yeast) UBX domain-containing protein 1 or Suppressor of high-copy PP1 protein (shp1), the homologue of p47. - Drosophila melanogaster (Fruit fly) eyes closed (eyc). ; PDB: 1S3S_G 1VAZ_A 1SS6_A.
Probab=29.19 E-value=46 Score=18.99 Aligned_cols=17 Identities=18% Similarity=0.467 Sum_probs=12.7
Q ss_pred EEEEecCeEeCCEEeee
Q psy15526 47 VVVSKIGYKLYNRVIRP 63 (71)
Q Consensus 47 ~~v~~~Gy~~~~rvlRp 63 (71)
+..++.||.++|=-||+
T Consensus 1 l~~w~nGf~VddGplR~ 17 (75)
T PF08059_consen 1 LTFWRNGFTVDDGPLRP 17 (75)
T ss_dssp EEEETTEEEETTS-EEE
T ss_pred CEEecCceEecCCCccc
Confidence 45789999999877765
No 54
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=27.96 E-value=72 Score=20.11 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccC
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFH 30 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~h 30 (71)
.++++...++++|+...+--...++|.++
T Consensus 77 ~y~kI~~~~~~~gf~v~D~s~~~y~~yfm 105 (130)
T PF04914_consen 77 YYKKIKYQLKSQGFNVADFSDDEYEPYFM 105 (130)
T ss_dssp HHHHHHHHHHTTT--EEE-TTGTTSTTSB
T ss_pred HHHHHHHHHHHCCCEEEecccCCCCCcee
Confidence 46778888888898777766666777765
No 55
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=27.31 E-value=64 Score=22.18 Aligned_cols=19 Identities=42% Similarity=0.845 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhCCceEeCC
Q psy15526 2 TDGNLKKVFKRHGLEPINP 20 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~ 20 (71)
+.+.|.++|+++|.++|.+
T Consensus 16 i~~~l~~~f~~~Gy~~i~~ 34 (311)
T PF13393_consen 16 IESKLREVFERHGYEEIET 34 (311)
T ss_dssp HHHHHHHHHHHTT-EE-B-
T ss_pred HHHHHHHHHHHcCCEEEEC
Confidence 4678999999999999998
No 56
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=27.26 E-value=1.2e+02 Score=17.77 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHhCCceEeCCC-CCCCCcccCeeeEEEecCCCCCCeEEEEEecCeE
Q psy15526 1 MTDGNLKKVFKRHGLEPINPL-GEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYK 55 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~-G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~ 55 (71)
|..++-.++|+++++++-... =..=||-.-. -+...|.|+.+.|++=.
T Consensus 18 Ls~eE~~~lL~~y~i~~~qLP~I~~~DPv~r~-------~g~k~GdVvkI~R~S~t 66 (79)
T PRK09570 18 LSEEEAKKLLKEYGIKPEQLPKIKASDPVVKA-------IGAKPGDVIKIVRKSPT 66 (79)
T ss_pred CCHHHHHHHHHHcCCCHHHCCceeccChhhhh-------cCCCCCCEEEEEECCCC
Confidence 345678889999998765531 1122332111 15789999999999743
No 57
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=27.15 E-value=60 Score=18.97 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=10.3
Q ss_pred HHHHHHHHhCCceEeCC
Q psy15526 4 GNLKKVFKRHGLEPINP 20 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~ 20 (71)
+||.++|++.|+.+...
T Consensus 1 ~QL~~il~~~g~~~~~~ 17 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSA 17 (114)
T ss_dssp HHHHHHHHHTT------
T ss_pred CHHHHHHHHcCCCCCcc
Confidence 68999999999988887
No 58
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.44 E-value=46 Score=20.10 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhCCceE
Q psy15526 2 TDGNLKKVFKRHGLEP 17 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~ 17 (71)
|++.|..+|+++|+++
T Consensus 47 iq~DL~kiL~~W~lte 62 (90)
T PF11691_consen 47 IQKDLDKILQKWGLTE 62 (90)
T ss_pred HHHHHHHHHHHcCCCH
Confidence 5778999999999875
No 59
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=26.30 E-value=56 Score=20.65 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHhCCce
Q psy15526 1 MTDGNLKKVFKRHGLE 16 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~ 16 (71)
|+|++|.+.|++.||+
T Consensus 74 lsYS~fi~gLkkA~I~ 89 (118)
T COG0292 74 LSYSRFINGLKKAGIE 89 (118)
T ss_pred CcHHHHHHHHHHcCch
Confidence 6799999999999987
No 60
>PF10816 DUF2760: Domain of unknown function (DUF2760); InterPro: IPR021212 This is a bacterial family of uncharacterised proteins.
Probab=25.94 E-value=1.5e+02 Score=18.96 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHHHHHH-hCCceEeCC--CC------CCCCcccCeeeEEEecCCCCCCeEEEEEecCeEe------------CCEEee
Q psy15526 4 GNLKKVFK-RHGLEPINP--LG------EKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKL------------YNRVIR 62 (71)
Q Consensus 4 ~~l~~~L~-~~gv~~i~~--~G------~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~------------~~rvlR 62 (71)
+.-.++|. -+-++++-. +| .-|||+.-.....+.....-.|+++ -+||+- ..++|-
T Consensus 44 ~gc~kvl~~~f~i~pV~~e~Egsrvtv~~gfda~~irLtGnV~G~pPf~G~L~---H~GWra~~v~LPk~~~~~d~~iiA 120 (125)
T PF10816_consen 44 EGCRKVLREYFTIEPVRDEEEGSRVTVPAGFDASAIRLTGNVVGEPPFTGTLV---HRGWRATEVRLPKLAEGHDASIIA 120 (125)
T ss_pred HHHHHHHHHhcceeeccccCCCCeEeccCCCCccceEEEeeecccCCCceeEe---eCCeEeeEEECCCcCCCCCcceec
Confidence 34445553 355666654 34 2699999999988754433357654 477775 347888
Q ss_pred eeEE
Q psy15526 63 PALV 66 (71)
Q Consensus 63 pA~V 66 (71)
||+|
T Consensus 121 PAEV 124 (125)
T PF10816_consen 121 PAEV 124 (125)
T ss_pred cccc
Confidence 8877
No 61
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=25.39 E-value=1.1e+02 Score=15.82 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=11.8
Q ss_pred ChHHHHHHHHHhCCc
Q psy15526 1 MTDGNLKKVFKRHGL 15 (71)
Q Consensus 1 mi~~~l~~~L~~~gv 15 (71)
|..++..+.|++.|+
T Consensus 9 ~~~~~a~~~l~~~g~ 23 (63)
T PF03793_consen 9 MTYDEAKSILEAAGL 23 (63)
T ss_dssp SBHHHHHHHHHHTT-
T ss_pred CcHHHHHHHHHHCCC
Confidence 567788899999998
No 62
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=25.25 E-value=37 Score=16.85 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhCCce
Q psy15526 2 TDGNLKKVFKRHGLE 16 (71)
Q Consensus 2 i~~~l~~~L~~~gv~ 16 (71)
+-.+|..+|..+||+
T Consensus 5 tV~~Lk~iL~~~~I~ 19 (35)
T PF12949_consen 5 TVAQLKRILDEHGIE 19 (35)
T ss_dssp -SHHHHHHHHHHT--
T ss_pred cHHHHHHHHHHcCCC
Confidence 456889999999974
No 63
>smart00553 SEP Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
Probab=25.21 E-value=57 Score=19.53 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=15.8
Q ss_pred eEEEEEecCeEeCCEEeee
Q psy15526 45 TVVVVSKIGYKLYNRVIRP 63 (71)
Q Consensus 45 ~I~~v~~~Gy~~~~rvlRp 63 (71)
.++..++.||.++|=-||+
T Consensus 5 ~~ltlw~nGFtVdDGplr~ 23 (93)
T smart00553 5 VVLTFWSNGFSVDDGPLRT 23 (93)
T ss_pred EEEEEecCCcEecCCCccc
Confidence 5678999999999877774
No 64
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=24.70 E-value=1.4e+02 Score=16.80 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCceEeCCCCCCCCccc-CeeeEEEecCCCCCCeEEEEE
Q psy15526 4 GNLKKVFKRHGLEPINPLGEKFDPNF-HEALFEQEVEGKEANTVVVVS 50 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~~G~~FDp~~-heav~~~~~~~~~~~~I~~v~ 50 (71)
+++.+.|.+.|++.+.. .+..+.. +.+... ...-++|.+++++
T Consensus 84 ~~~~~~l~~~G~~~~~~--~~~~~~~g~~~~~~--~~~dp~G~~~E~~ 127 (128)
T TIGR03081 84 EAALETLKEKGVRLIDE--EPRIGAGGKPVAFL--HPKSTGGVLIELE 127 (128)
T ss_pred HHHHHHHHHCCCcccCC--CCccCCCCCEEEEe--cccccCcEEEEec
Confidence 45667788899987754 1223222 233332 2234789998875
No 65
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=24.63 E-value=26 Score=20.22 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCceEeCCCCCCCCccc
Q psy15526 4 GNLKKVFKRHGLEPINPLGEKFDPNF 29 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~~G~~FDp~~ 29 (71)
.-+.++|+++|++.... -.+|+|..
T Consensus 42 ~~l~~~L~~lg~~~~~~-~~~f~p~~ 66 (87)
T PF05194_consen 42 HVLEELLRKLGLEVEKV-ERPFDPES 66 (87)
T ss_dssp HHHHHHHHHTT-EEEEE-EEE--GCC
T ss_pred HHHHHHHHHCCCccEEe-eeccCCCC
Confidence 35788999999776443 34788865
No 66
>PF14291 DUF4371: Domain of unknown function (DUF4371)
Probab=24.59 E-value=55 Score=22.06 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCc
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDP 27 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp 27 (71)
+.+.+.+.|.++|+..-.+.|.-||-
T Consensus 200 l~~~i~~~L~~~~l~~~~~~gq~yDg 225 (235)
T PF14291_consen 200 LFNAIKDVLEKLGLDLSNCRGQCYDG 225 (235)
T ss_pred HHHHHHHHHHHcCCCHHHcCcccccC
Confidence 45778999999999988889998884
No 67
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=24.31 E-value=83 Score=22.09 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhCCceEeCCC-CCCCCc
Q psy15526 2 TDGNLKKVFKRHGLEPINPL-GEKFDP 27 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~-G~~FDp 27 (71)
+..+|.++|+++|.++|.+. =+.+|-
T Consensus 13 ie~~l~~~f~~~GY~~I~tP~~E~~d~ 39 (272)
T PRK12294 13 SETAFLKYFNKADYELVDFSVIEKLDW 39 (272)
T ss_pred HHHHHHHHHHHcCCeEeeCCcchhHHh
Confidence 46789999999999999983 344443
No 68
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=24.26 E-value=1.2e+02 Score=22.45 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCceEeCCCCCCCCccc
Q psy15526 4 GNLKKVFKRHGLEPINPLGEKFDPNF 29 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~~G~~FDp~~ 29 (71)
..+...|...|+.+|-+.|+.-++..
T Consensus 358 ~~~~~~l~~~Gv~Riv~~G~m~~~~~ 383 (399)
T PF05893_consen 358 EELARALAAAGVDRIVPLGQMLDFDP 383 (399)
T ss_pred HHHHHHHHhcCCeeeCCCCcCCCCCC
Confidence 45677799999999999998666654
No 69
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=24.14 E-value=92 Score=17.76 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHhCCceEeCCCCC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGE 23 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~ 23 (71)
|..+.+.++|++.|...+-..|.
T Consensus 7 ~~~ke~ik~Le~~Gf~~vrqkGS 29 (66)
T COG1724 7 MKAKEVIKALEKDGFQLVRQKGS 29 (66)
T ss_pred CCHHHHHHHHHhCCcEEEEeecc
Confidence 45688999999999999998886
No 70
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=23.62 E-value=85 Score=21.96 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhCCceEeCCC
Q psy15526 2 TDGNLKKVFKRHGLEPINPL 21 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~ 21 (71)
+.+.+.++|+++|.++|.+.
T Consensus 25 i~~~l~~vf~~~Gy~~I~tP 44 (281)
T PRK12293 25 IENVASEILYENGFEEIVTP 44 (281)
T ss_pred HHHHHHHHHHHcCCeEeecc
Confidence 45788999999999999984
No 71
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=23.45 E-value=35 Score=19.71 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhCCceEeCCC-CCCCCcccCeeeEEEecCCCCCCeEEEEEecC
Q psy15526 2 TDGNLKKVFKRHGLEPINPL-GEKFDPNFHEALFEQEVEGKEANTVVVVSKIG 53 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~-G~~FDp~~heav~~~~~~~~~~~~I~~v~~~G 53 (71)
...+-.++|+++++++-... =...||-.... +..+|.|+.+.|+.
T Consensus 16 s~eE~~~lL~~y~i~~~qLP~I~~~DPv~r~~-------g~k~GdVvkI~R~S 61 (74)
T PF01191_consen 16 SEEEKKELLKKYNIKPEQLPKILSSDPVARYL-------GAKPGDVVKIIRKS 61 (74)
T ss_dssp -HHHHHHHHHHTT--TTCSSEEETTSHHHHHT-------T--TTSEEEEEEEE
T ss_pred CHHHHHHHHHHhCCChhhCCcccccChhhhhc-------CCCCCCEEEEEecC
Confidence 45677889999998644421 12355543222 56889999999875
No 72
>PRK09919 anti-adapter protein IraM; Provisional
Probab=23.44 E-value=95 Score=19.48 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.5
Q ss_pred CCCCeEEEEEecCeEeCCEEee
Q psy15526 41 KEANTVVVVSKIGYKLYNRVIR 62 (71)
Q Consensus 41 ~~~~~I~~v~~~Gy~~~~rvlR 62 (71)
.++|.++....+|..++|+...
T Consensus 39 L~pG~~i~~~~~gvliNdk~~p 60 (114)
T PRK09919 39 LPPGSIITPVKSGVLLNDKPYP 60 (114)
T ss_pred eCCCCEEEEcCCeEEECCcEeE
Confidence 4799999999999999997654
No 73
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=23.09 E-value=26 Score=20.93 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhCCceEeCC-CC-CCCCcccCeeeE
Q psy15526 2 TDGNLKKVFKRHGLEPINP-LG-EKFDPNFHEALF 34 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~-~G-~~FDp~~heav~ 34 (71)
+.+.+.+.|+.+|++..+. .+ -.|.+++-+|++
T Consensus 87 i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~ 121 (124)
T cd03400 87 IKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIE 121 (124)
T ss_pred HHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHH
Confidence 3566777788899988776 43 356666666553
No 74
>PRK14113 urease accessory protein UreE; Provisional
Probab=23.01 E-value=60 Score=21.04 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=15.8
Q ss_pred HHHHHHHhCCceEeCCCCCCCCcc
Q psy15526 5 NLKKVFKRHGLEPINPLGEKFDPN 28 (71)
Q Consensus 5 ~l~~~L~~~gv~~i~~~G~~FDp~ 28 (71)
-+.++|+++|+..-. .-.+|+|+
T Consensus 113 vl~~mL~~lG~~v~~-~~~pf~Pe 135 (152)
T PRK14113 113 VLEDLAENYGLSVNH-EPAVFEPE 135 (152)
T ss_pred HHHHHHHhCCCeeEE-eEeccCCC
Confidence 367889999986544 33567776
No 75
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.90 E-value=41 Score=23.90 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=23.8
Q ss_pred HHHHHHhCCceEeCCCCCCCCcccCeeeEEEe
Q psy15526 6 LKKVFKRHGLEPINPLGEKFDPNFHEALFEQE 37 (71)
Q Consensus 6 l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~ 37 (71)
+..++++.|-..+....+| |+++|+++....
T Consensus 21 l~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~ 51 (255)
T COG3640 21 LKRLLSKGGYNVLVVDADP-DSNLPEALGVEE 51 (255)
T ss_pred HHHHHhcCCceEEEEeCCC-CCChHHhcCCCC
Confidence 4566777776666666788 999999998754
No 76
>PF05657 DUF806: Protein of unknown function (DUF806); InterPro: IPR008524 This entry is represented by Streptococcus phage 7201, Orf30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Siphovirus and Lactococcus proteins of unknown function. The viral sequences are thought to be tail component proteins.
Probab=22.90 E-value=2e+02 Score=17.95 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEE
Q psy15526 3 DGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQ 36 (71)
Q Consensus 3 ~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~ 36 (71)
..+|.+.|...|.......|-..||.--|...+.
T Consensus 82 E~~L~~~~~~~~W~i~~s~~ht~DPdT~Q~t~tf 115 (123)
T PF05657_consen 82 EIALMKLFEDNGWQISSSRGHTVDPDTQQITKTF 115 (123)
T ss_pred HHHHHHHHHhCCEEEEeCCCCcCCCCCCcEEEEE
Confidence 4678899999999999999999999988877654
No 77
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=22.90 E-value=88 Score=20.03 Aligned_cols=19 Identities=42% Similarity=0.913 Sum_probs=14.4
Q ss_pred HHHHHhCCceEeCCCCCCCCcc
Q psy15526 7 KKVFKRHGLEPINPLGEKFDPN 28 (71)
Q Consensus 7 ~~~L~~~gv~~i~~~G~~FDp~ 28 (71)
++.|.++| |+|.|-|-||.
T Consensus 110 ~~~f~~Ng---I~pdG~P~DpK 128 (128)
T PF09435_consen 110 ERRFKKNG---IGPDGRPLDPK 128 (128)
T ss_pred HHHHHHcC---CCCCCCCCCCC
Confidence 45677777 67889999883
No 78
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=22.78 E-value=21 Score=24.71 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=8.7
Q ss_pred ecCeEeCCEE
Q psy15526 51 KIGYKLYNRV 60 (71)
Q Consensus 51 ~~Gy~~~~rv 60 (71)
|.||++||||
T Consensus 188 RgGy~YHGRV 197 (211)
T PTZ00032 188 RAHYKYAGKV 197 (211)
T ss_pred CCCCeehhHH
Confidence 7899999986
No 79
>PHA03294 envelope glycoprotein H; Provisional
Probab=22.64 E-value=93 Score=25.65 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=18.8
Q ss_pred CCCcccC----eeeEEEecCCCCCCeEEEEEe
Q psy15526 24 KFDPNFH----EALFEQEVEGKEANTVVVVSK 51 (71)
Q Consensus 24 ~FDp~~h----eav~~~~~~~~~~~~I~~v~~ 51 (71)
.|||..| +++.. .++|||+++.-
T Consensus 765 ~Fnp~~H~~~s~yLLL-----fpNGTVveIlg 791 (835)
T PHA03294 765 VFNPTLHGGPSTALLL-----FPNGTVVHLLA 791 (835)
T ss_pred ccCCcccCCCceEEEE-----cCCceEEEEee
Confidence 6999999 57776 47899999863
No 80
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=22.11 E-value=70 Score=20.89 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCceEeCCCCCCCCcc
Q psy15526 3 DGNLKKVFKRHGLEPINPLGEKFDPN 28 (71)
Q Consensus 3 ~~~l~~~L~~~gv~~i~~~G~~FDp~ 28 (71)
.+++.++|++.|.+.+...|--|+|-
T Consensus 186 ~~~~~~~l~~~Gf~~v~~~~~~~~~~ 211 (233)
T PRK05134 186 PSELAAWLRQAGLEVQDITGLHYNPL 211 (233)
T ss_pred HHHHHHHHHHCCCeEeeeeeEEechh
Confidence 45788999999999988876555554
No 81
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=21.72 E-value=68 Score=23.03 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccCe
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHE 31 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~he 31 (71)
...++.+.|++.|++.++..|-.|+|-.-.
T Consensus 269 tp~eL~~lL~~aGf~i~~~~G~~~~p~~~~ 298 (322)
T PLN02396 269 TPEELSMILQRASVDVKEMAGFVYNPITGR 298 (322)
T ss_pred CHHHHHHHHHHcCCeEEEEeeeEEcCcCCe
Confidence 357899999999999999999889986554
No 82
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=21.68 E-value=58 Score=18.05 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=14.9
Q ss_pred ChHHHHHHHHHhCCceEeCC
Q psy15526 1 MTDGNLKKVFKRHGLEPINP 20 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~ 20 (71)
|+.+++.+.++++|++-...
T Consensus 15 ~~~~~i~~~~~~~gi~~~~~ 34 (90)
T PF02302_consen 15 MVANKIKKALKELGIEVEVS 34 (90)
T ss_dssp HHHHHHHHHHHHTTECEEEE
T ss_pred HHHHHHHHHHHhccCceEEE
Confidence 34688999999999655443
No 83
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.37 E-value=1.2e+02 Score=19.55 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhCCceEeCCC
Q psy15526 2 TDGNLKKVFKRHGLEPINPL 21 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~ 21 (71)
+.+++..+|++.||+.|...
T Consensus 65 ~skkvlkaleq~gI~vIPvk 84 (139)
T COG1710 65 VSKKVLKALEQMGIKVIPVK 84 (139)
T ss_pred HHHHHHHHHHhCCceEeeee
Confidence 35778899999999999874
No 84
>PF07727 RVT_2: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR013103 A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. This entry includes reverse transcriptases not recognised by IPR000477 from INTERPRO [].
Probab=21.33 E-value=99 Score=21.19 Aligned_cols=25 Identities=28% Similarity=0.725 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCceEeCCCCCCCCcc
Q psy15526 4 GNLKKVFKRHGLEPINPLGEKFDPN 28 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~~G~~FDp~ 28 (71)
+-+.++|+++|.+.-.++..|.||+
T Consensus 222 ~YI~~il~~f~~~~~k~~~tP~~p~ 246 (246)
T PF07727_consen 222 AYIEKILERFGMQDAKPVSTPMDPN 246 (246)
T ss_pred HHHHHHHHHhCCCCCcCCCCCcCCC
Confidence 4578899999999888888999885
No 85
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=21.23 E-value=40 Score=21.10 Aligned_cols=31 Identities=35% Similarity=0.695 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCceEeCC-CCC---CCCcccCeeeE
Q psy15526 4 GNLKKVFKRHGLEPINP-LGE---KFDPNFHEALF 34 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~-~G~---~FDp~~heav~ 34 (71)
+.++..-+..|+++-.+ -|+ ..||++|++..
T Consensus 52 ~~yle~C~~~g~EP~k~~SGkf~~Ri~p~lH~~a~ 86 (111)
T COG4226 52 DDYLEFCKERGIEPRKPYSGKFNLRIDPELHEAAA 86 (111)
T ss_pred HHHHHHHHHcCCCCccccCceeeEecCHHHHHHHH
Confidence 34455556789988888 565 56899998764
No 86
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=20.95 E-value=1e+02 Score=21.64 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhCCceEeCCC
Q psy15526 2 TDGNLKKVFKRHGLEPINPL 21 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~ 21 (71)
+.+.|.++++++|.++|.+.
T Consensus 14 i~~~l~~~~~~~Gy~~i~tP 33 (314)
T TIGR00443 14 IERQLQDVFRSWGYQEIITP 33 (314)
T ss_pred HHHHHHHHHHHcCCeeccCc
Confidence 56789999999999999983
No 87
>PF07841 DM4_12: DM4/DM12 family; InterPro: IPR006631 This domain of unknown function is found in primarily in Drosophila melanogaster (Fruit fly) proteins of unknown function.
Probab=20.79 E-value=96 Score=17.44 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhCCc
Q psy15526 2 TDGNLKKVFKRHGL 15 (71)
Q Consensus 2 i~~~l~~~L~~~gv 15 (71)
++++|+++|+++|+
T Consensus 4 lY~~lE~~l~~~G~ 17 (82)
T PF07841_consen 4 LYKKLEDMLQRMGF 17 (82)
T ss_pred HHHHHHHHHHHcCC
Confidence 67889999999997
No 88
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=20.73 E-value=1e+02 Score=22.50 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhCCceEeCCC-CCCCC
Q psy15526 2 TDGNLKKVFKRHGLEPINPL-GEKFD 26 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~-G~~FD 26 (71)
+.+++.++|+++|.++|.+. =+++|
T Consensus 10 i~~~i~~~f~~~Gy~~I~tP~lE~~e 35 (373)
T PRK12295 10 AAEALLASFEAAGAVRVDPPILQPAE 35 (373)
T ss_pred HHHHHHHHHHHcCCEEeeCCccccHH
Confidence 56789999999999999983 34444
No 89
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=20.57 E-value=1.9e+02 Score=18.65 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCceE-eCCC--------CCCCCcccCeeeEE
Q psy15526 4 GNLKKVFKRHGLEP-INPL--------GEKFDPNFHEALFE 35 (71)
Q Consensus 4 ~~l~~~L~~~gv~~-i~~~--------G~~FDp~~heav~~ 35 (71)
+.|.+-+.+.||+. |+.. +.-|||..-+.+-.
T Consensus 25 k~~kk~m~~~gIkV~Idkk~kilP~n~aagFd~~tg~I~lr 65 (132)
T PF15640_consen 25 KNFKKEMGKRGIKVKIDKKDKILPENKAAGFDPETGEIYLR 65 (132)
T ss_pred HHHHHHHHhCCcEEEECCccCCCCccccccCCCCCCcEEEc
Confidence 56778899999998 4433 34577777766643
No 90
>PRK15124 2'-5' RNA ligase; Provisional
Probab=20.55 E-value=1.4e+02 Score=19.05 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCccc
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNF 29 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~ 29 (71)
+++++.+.|.+.|+ .+...+|-|++
T Consensus 102 L~~~l~~~l~~~G~---~~e~r~f~PHi 126 (176)
T PRK15124 102 LANMLRSQAARSGC---YQSPQPFHPHI 126 (176)
T ss_pred HHHHHHHHHHHcCC---CCCCCCCCCCE
Confidence 35678888899997 33567888875
No 91
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.11 E-value=79 Score=18.81 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=13.9
Q ss_pred ChHHHHHHHHHhCCce
Q psy15526 1 MTDGNLKKVFKRHGLE 16 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~ 16 (71)
|+..+++++|+++|+.
T Consensus 17 ~ik~kve~~l~~~gi~ 32 (93)
T COG3414 17 MIKMKVEEVLKELGID 32 (93)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5778999999999983
Done!