Query psy15526
Match_columns 71
No_of_seqs 136 out of 1050
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:36:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dkg_A Nucleotide exchange fac 100.0 2.7E-31 9.1E-36 177.4 8.7 71 1-71 125-195 (197)
2 3a6m_A Protein GRPE, HSP-70 co 100.0 1.8E-30 6.2E-35 171.1 9.3 68 1-71 102-169 (177)
3 4ani_A Protein GRPE; chaperone 100.0 7.7E-31 2.6E-35 177.1 6.6 70 1-70 144-213 (213)
4 1wi8_A EIF-4B, eukaryotic tran 62.0 1.4 4.7E-05 24.5 -0.3 60 2-63 28-88 (104)
5 2dnr_A Synaptojanin-1; RRM dom 61.2 2.1 7.2E-05 24.9 0.4 52 3-64 29-81 (91)
6 1ufw_A Synaptojanin 2; RNP dom 45.3 2.3 7.9E-05 25.0 -1.3 52 3-64 38-90 (95)
7 2lxi_A RNA-binding protein 10; 45.2 2.1 7.3E-05 23.5 -1.4 14 2-15 14-27 (91)
8 3fyn_A Integron gene cassette 41.9 15 0.00052 21.0 2.0 27 6-32 148-176 (176)
9 3cxj_A Uncharacterized protein 40.4 69 0.0024 20.3 5.2 44 2-53 4-47 (165)
10 1vaz_A NSFL1 cofactor P47; bet 38.9 11 0.00038 21.7 1.1 22 42-63 21-42 (88)
11 2a2p_A Selenoprotein M, SELM p 37.5 22 0.00075 21.8 2.3 34 2-35 78-111 (129)
12 2lkt_A Retinoic acid receptor 35.9 18 0.00061 21.1 1.7 27 37-63 4-36 (125)
13 1whz_A Hypothetical protein; a 35.4 23 0.00079 18.6 2.0 23 1-23 5-27 (70)
14 1h3o_A Transcription initiatio 33.2 35 0.0012 19.0 2.5 19 2-20 8-26 (75)
15 2e5g_A U6 snRNA-specific termi 33.2 5.9 0.0002 21.4 -0.8 54 2-63 21-76 (94)
16 1hmj_A RPB5, protein (subunit 32.5 37 0.0013 19.0 2.5 48 1-55 15-63 (78)
17 2j76_E EIF-4B, EIF4B, eukaryot 32.1 1.4 4.7E-05 24.5 -3.7 60 2-63 32-92 (100)
18 2cq4_A RNA binding motif prote 29.3 27 0.00094 19.2 1.7 59 2-63 38-98 (114)
19 2err_A Ataxin-2-binding protei 28.5 4.4 0.00015 22.8 -1.9 60 2-63 42-101 (109)
20 4avr_A PA4485; unknown functio 26.9 74 0.0025 18.3 3.3 29 18-50 17-45 (95)
21 4agk_A Capsid protein, coat pr 26.4 43 0.0015 21.0 2.3 15 53-67 21-37 (158)
22 1eik_A RNA polymerase subunit 26.1 38 0.0013 18.9 1.8 45 2-53 18-63 (77)
23 4ayb_H DNA-directed RNA polyme 25.4 29 0.001 19.6 1.3 45 2-53 24-69 (84)
24 3r0r_A Porcine circovirus 2 (P 24.0 16 0.00054 24.5 -0.1 19 47-65 142-160 (226)
25 1win_A Flotillin 2; BAND 7 dom 23.9 18 0.00061 21.6 0.2 36 2-37 99-136 (143)
26 1ep5_B Capsid protein C, coat 22.4 29 0.00099 21.8 0.9 15 53-67 20-36 (157)
27 3pfg_A N-methyltransferase; N, 22.0 66 0.0022 20.0 2.6 31 2-32 216-246 (263)
28 1taf_A TFIID TBP associated fa 21.2 49 0.0017 17.9 1.6 17 4-20 5-21 (68)
29 1ug1_A KIAA1010 protein; struc 21.0 1.2E+02 0.0042 17.4 3.4 45 2-52 3-47 (92)
30 2xqy_A GH, envelope glycoprote 20.6 63 0.0021 24.4 2.5 22 24-50 505-530 (572)
31 1kxf_A Sindbis virus capsid pr 20.5 76 0.0026 21.6 2.7 26 42-67 111-143 (264)
32 3bma_A D-alanyl-lipoteichoic a 20.2 85 0.0029 22.5 3.1 30 2-31 317-347 (407)
No 1
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=99.97 E-value=2.7e-31 Score=177.35 Aligned_cols=71 Identities=30% Similarity=0.477 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+++||+++|||||||+|+|+++
T Consensus 125 ~~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRvLRpA~V~V~~~ 195 (197)
T 1dkg_A 125 LTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKA 195 (197)
T ss_dssp HHHHHHHHHHTTTTEEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEEECEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCCHHHhheeeeecCCCCCcCeEEEEeeCCeeeCCEEecceEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999974
No 2
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=99.97 E-value=1.8e-30 Score=171.12 Aligned_cols=68 Identities=26% Similarity=0.451 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeecC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISKS 71 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k~ 71 (71)
||+++|.++|+++||++|+++|++|||++|+|++++++ ++|||++|+++||+++|||||||+|+|+++
T Consensus 102 m~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~---~~gtVv~v~qkGY~l~dRvLRpA~V~V~~~ 169 (177)
T 3a6m_A 102 AIRDGFFRILAGLGVEEVPGEGEAFDPRYHEAVGLLPG---EPGKVAKVFQRGFRMGEALVRPARVAVGEE 169 (177)
T ss_dssp HHHHHHHHHHHHTTCEECCCTTSBCCTTTEEEEEEEES---STTBEEEEEECCEEETTEEEECEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhhhhcccC---CcCeEEEEeecCeeeCCEEecCeEEEEeCC
Confidence 68999999999999999999999999999999999987 899999999999999999999999999973
No 3
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=99.97 E-value=7.7e-31 Score=177.06 Aligned_cols=70 Identities=44% Similarity=0.740 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeeeEEEeec
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA~V~V~k 70 (71)
||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+++|||||||+|+|++
T Consensus 144 mi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va~ 213 (213)
T 4ani_A 144 MVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRPAMVKVSQ 213 (213)
T ss_dssp HHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEETTSCCSCEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEECCEEeeceEEEeCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 4
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.98 E-value=1.4 Score=24.54 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCC-CCeEEEEEecCeEeCCEEeee
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKE-ANTVVVVSKIGYKLYNRVIRP 63 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~-~~~I~~v~~~Gy~~~~rvlRp 63 (71)
+.+.|.+.|+++||..+...-++-.+..+.-..-+.=.+.+ ....+ ...|+.++|+.|+.
T Consensus 28 t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~--~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 28 TEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL--SLNEESLGNKRIRV 88 (104)
T ss_dssp CHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH--GGGTCEETTEECEE
T ss_pred CHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH--hcCCCEeCCcEEEE
Confidence 56789999999997777654332221222322222211111 11112 45788889987764
No 5
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.20 E-value=2.1 Score=24.86 Aligned_cols=52 Identities=29% Similarity=0.323 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCC-ceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeee
Q psy15526 3 DGNLKKVFKRHG-LEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPA 64 (71)
Q Consensus 3 ~~~l~~~L~~~g-v~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA 64 (71)
...|.+.|..+| +..+..+.+. ..+.-.+.......++ ..|+.++||.||--
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~--mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS--LNGKELLNRTITIA 81 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG--GTTCEETTEEEEEE
T ss_pred HHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh--cCCeEeCCeEEEEE
Confidence 456889999999 5444445543 2333233222223334 89999999999854
No 6
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.33 E-value=2.3 Score=24.96 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCC-ceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeeee
Q psy15526 3 DGNLKKVFKRHG-LEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPA 64 (71)
Q Consensus 3 ~~~l~~~L~~~g-v~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRpA 64 (71)
...|.+.|..+| +.-+..+.+. .-..-.+....-..++ ..|+.++||.||-.
T Consensus 38 ~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~--ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 38 RTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD--VDGMKVKGRAVKIS 90 (95)
T ss_dssp HHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH--GGGSEETTEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh--cCCeeeCCeEEEEe
Confidence 346888899999 4444444443 2232233322223334 89999999999853
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=45.17 E-value=2.1 Score=23.50 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=11.9
Q ss_pred hHHHHHHHHHhCCc
Q psy15526 2 TDGNLKKVFKRHGL 15 (71)
Q Consensus 2 i~~~l~~~L~~~gv 15 (71)
+.++|.+.|+++|.
T Consensus 14 te~~l~~~F~~~G~ 27 (91)
T 2lxi_A 14 TEDDIRGQLQSHGV 27 (91)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhCC
Confidence 56789999999994
No 8
>3fyn_A Integron gene cassette protein HFX_CASS3; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.45A {Uncultured bacterium}
Probab=41.95 E-value=15 Score=21.00 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=15.9
Q ss_pred HHHHHHhCCceEeCC--CCCCCCcccCee
Q psy15526 6 LKKVFKRHGLEPINP--LGEKFDPNFHEA 32 (71)
Q Consensus 6 l~~~L~~~gv~~i~~--~G~~FDp~~hea 32 (71)
-...++++|.+.+.. ....++|..|||
T Consensus 148 a~~~y~k~GF~~~~~~~~~k~l~~~~~ea 176 (176)
T 3fyn_A 148 ARGVYSRAGFEESGRMLLGQALAPPIHEA 176 (176)
T ss_dssp ---HHHHTTCCCCCCCCCCCCSSCCTTC-
T ss_pred HHHHHHHCCCeeccceEEEEEecCccccC
Confidence 345677777777765 255677777775
No 9
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=40.39 E-value=69 Score=20.30 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecC
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIG 53 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~G 53 (71)
..+++.+.|..+|+..-.+.++ +..+|=.++ .|.|.+++|+++=
T Consensus 4 ~~~~I~~WL~eeG~~v~~~~~a--~a~fH~~v~------~P~~p~~dVIrP~ 47 (165)
T 3cxj_A 4 SQEMIKKWLDEEGFLRMEVPDE--NARFHYVVN------YPEDHVIDIIQPA 47 (165)
T ss_dssp HHHHHHHHHHHTTCEEEECCCT--TEEEEEEEE------CSTTCEEEEEEES
T ss_pred cHHHHHHHHHHcCceEecCCCC--CCceEEEEe------CCCCCEEEEEeeC
Confidence 5688999999999999887543 236666663 3445778888763
No 10
>1vaz_A NSFL1 cofactor P47; beta-BETA-beta-alpha-alpha-beta, novel fold, lipid binding protein; NMR {Rattus norvegicus} SCOP: d.245.1.1
Probab=38.95 E-value=11 Score=21.66 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=17.7
Q ss_pred CCCeEEEEEecCeEeCCEEeee
Q psy15526 42 EANTVVVVSKIGYKLYNRVIRP 63 (71)
Q Consensus 42 ~~~~I~~v~~~Gy~~~~rvlRp 63 (71)
+...++..++.||.++|=-||+
T Consensus 21 ~v~~~LtlW~nGFtVdDGpLR~ 42 (88)
T 1vaz_A 21 DVHVVLKLWKTGFSLDNGDLRS 42 (88)
T ss_dssp CCEEEEEEETTEEECTTSCEEE
T ss_pred CceEEEEEecCceEecCCCCcC
Confidence 3456799999999999877775
No 11
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=37.48 E-value=22 Score=21.84 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEE
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFE 35 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~ 35 (71)
..+++.+.|++.|+..=...-+.+.+++|+|=..
T Consensus 78 ~~d~I~efL~e~GF~rk~~~~~~~p~e~~~~p~~ 111 (129)
T 2a2p_A 78 TRDEINALVQELGFYRKSAPEAQVPPEYLWAPAK 111 (129)
T ss_dssp CHHHHHHHHHHHTCCBCSSTTCCCCGGGSSTTSC
T ss_pred CHHHHHHHHHHcCCccccccccCCCHHHHhCCCC
Confidence 4678999999999998887778899999988643
No 12
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=35.91 E-value=18 Score=21.13 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=20.3
Q ss_pred ecCCCCCCeEEEEEecCeEe------CCEEeee
Q psy15526 37 EVEGKEANTVVVVSKIGYKL------YNRVIRP 63 (71)
Q Consensus 37 ~~~~~~~~~I~~v~~~Gy~~------~~rvlRp 63 (71)
+..+.++|.++++.|.+|.. +|+|+-.
T Consensus 4 ~~~ep~pGDlI~~~r~~Y~H~gIYvGdg~ViH~ 36 (125)
T 2lkt_A 4 PHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHL 36 (125)
T ss_dssp SSCCCCTTCEEEEECSSSCEEEEEEETTEEEEE
T ss_pred CCCCCCCCCEEEEeCCCccEEEEEeCCCeEEEE
Confidence 34567799999999999987 4566654
No 13
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=35.45 E-value=23 Score=18.56 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHhCCceEeCCCCC
Q psy15526 1 MTDGNLKKVFKRHGLEPINPLGE 23 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~G~ 23 (71)
|..++|.++|++.|.+....-|.
T Consensus 5 ~~~~elik~L~~~G~~~~r~~GS 27 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVERMAKGG 27 (70)
T ss_dssp CCHHHHHHHHHHTTCEEEEEETT
T ss_pred CCHHHHHHHHHHCCCEEeCCCCC
Confidence 45689999999999988765565
No 14
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=33.18 E-value=35 Score=19.03 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhCCceEeCC
Q psy15526 2 TDGNLKKVFKRHGLEPINP 20 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~ 20 (71)
.++++.++-.++|++.+.+
T Consensus 8 Lqkri~~I~~k~gl~~~~~ 26 (75)
T 1h3o_A 8 LQRRILEIGKKHGITELHP 26 (75)
T ss_dssp HHHHHHHHHHTTTCCEECT
T ss_pred HHHHHHHHHHhcCCCcCCh
Confidence 4688899999999998876
No 15
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.17 E-value=5.9 Score=21.44 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhCC-ceEeCCCCCCCCcccCeeeEEEecCCC-CCCeEEEEEecCeEeCCEEeee
Q psy15526 2 TDGNLKKVFKRHG-LEPINPLGEKFDPNFHEALFEQEVEGK-EANTVVVVSKIGYKLYNRVIRP 63 (71)
Q Consensus 2 i~~~l~~~L~~~g-v~~i~~~G~~FDp~~heav~~~~~~~~-~~~~I~~v~~~Gy~~~~rvlRp 63 (71)
+.+.|.+.|+++| |..+ ..|+.... ..-+.=.+. .....++ ..|+.++||.|+.
T Consensus 21 t~~~l~~~F~~~G~v~~v-----~~~~~~g~-~afV~f~~~~~a~~ai~--l~g~~~~g~~l~V 76 (94)
T 2e5g_A 21 DSAQLSEYFLAFGPVASV-----VMDKDKGV-FAIVEMGDVGAREAVLS--QSQHSLGGHRLRV 76 (94)
T ss_dssp CHHHHHHHGGGTSCEEEE-----EECSSSCC-EEEEEESSHHHHHHHHT--CSCCEETTEECCC
T ss_pred CHHHHHHHHHhcCCeEEE-----EEcCCCCc-EEEEEECCHHHHHHHHh--cCCeEECCEEEEE
Confidence 4678899999998 3332 33333222 222221111 1222233 5788889987764
No 16
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=32.46 E-value=37 Score=19.03 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHhCCceEeCCC-CCCCCcccCeeeEEEecCCCCCCeEEEEEecCeE
Q psy15526 1 MTDGNLKKVFKRHGLEPINPL-GEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYK 55 (71)
Q Consensus 1 mi~~~l~~~L~~~gv~~i~~~-G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~ 55 (71)
|..++-.++|+++++++-... =..-||-.. .=+...|.|+.+.|+.=.
T Consensus 15 Ls~eEk~~lL~~y~i~~~qLPrI~~~DPvar-------~~G~k~GdVvkI~R~S~t 63 (78)
T 1hmj_A 15 VPKEEVEEILKRYNIKIQQLPKIYEDDPVIQ-------EIGAKEGDVVRVIRKSPT 63 (78)
T ss_pred CCHHHHHHHHHHcCCCHHHCCeeeCcCHhhH-------HhCCCCCCEEEEEECCCC
Confidence 456778899999998644321 122344211 115689999999998643
No 17
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=32.08 E-value=1.4 Score=24.53 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCC-CCeEEEEEecCeEeCCEEeee
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKE-ANTVVVVSKIGYKLYNRVIRP 63 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~-~~~I~~v~~~Gy~~~~rvlRp 63 (71)
+.+.|.+.|+++||..+...-+.-+...+.-..-+.=.+.+ ....+ -..|+.++||.|+.
T Consensus 32 t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai--~l~g~~~~g~~l~V 92 (100)
T 2j76_E 32 TEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL--SLNEESLGNRRIRV 92 (100)
T ss_dssp SSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH--HTTTCCBTTBCCCC
T ss_pred CHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH--hcCCCEECCeEEEE
Confidence 34678899999997766653332122223222222211211 11111 35788888877653
No 18
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.32 E-value=27 Score=19.24 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhCC-ceEeCCCCCCCCcccCeeeEEEecCCCC-CCeEEEEEecCeEeCCEEeee
Q psy15526 2 TDGNLKKVFKRHG-LEPINPLGEKFDPNFHEALFEQEVEGKE-ANTVVVVSKIGYKLYNRVIRP 63 (71)
Q Consensus 2 i~~~l~~~L~~~g-v~~i~~~G~~FDp~~heav~~~~~~~~~-~~~I~~v~~~Gy~~~~rvlRp 63 (71)
+.++|.+.|+++| |..+...-++- ...+.-..-+.=.+.+ ....+ ...|+.++|+.|+.
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~--~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 38 RPRDLEDFFSAVGKVRDVRIISDRN-SRRSKGIAYVEFCEIQSVPLAI--GLTGQRLLGVPIIV 98 (114)
T ss_dssp CHHHHHHHHTTTSCEEEEEECCSCC-SSSCCCCEEEEESCGGGHHHHH--HHTTEEETTEEEEE
T ss_pred CHHHHHHHHHhCCCEeEEEEEecCC-CCccCcEEEEEeCcHHHHHHHH--HcCCCEeCCeEEEE
Confidence 4678999999998 23332221111 1122222222211211 11222 55789999988764
No 19
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.52 E-value=4.4 Score=22.83 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEecCeEeCCEEeee
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRP 63 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~Gy~~~~rvlRp 63 (71)
+.++|.+.|+++| .|..+--..|+....-..-+.=.+.++-.-+-....|+.++||.|+.
T Consensus 42 te~~l~~~F~~~G--~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 42 RDPDLRQMFGQFG--KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CHHHHHHHGGGTC--CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred CHHHHHHHHHhcC--CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4678899999998 33332222333222222222211111111011123688888987764
No 20
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}
Probab=26.93 E-value=74 Score=18.33 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=20.3
Q ss_pred eCCCCCCCCcccCeeeEEEecCCCCCCeEEEEE
Q psy15526 18 INPLGEKFDPNFHEALFEQEVEGKEANTVVVVS 50 (71)
Q Consensus 18 i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~ 50 (71)
..+-|+.|||+-+.|.- ...|=|+.+.|.
T Consensus 17 ~TA~Ge~~~~~~~tAAH----~tlP~gt~vrVt 45 (95)
T 4avr_A 17 RTASGERYNPNAMTAAH----RTLPFGARVRVT 45 (95)
T ss_dssp BCTTSCBCCTTSCEEEC----SSSCTTCEEEEE
T ss_pred CCCCccCcCCCCCEEEc----CCCCCCcEEEEE
Confidence 34579999999887763 345666666665
No 21
>4agk_A Capsid protein, coat protein, C; hydrolase, viral protein; 1.81A {Aura virus} PDB: 4agj_A 1kxa_A 2snw_A 1svp_A 1kxb_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A
Probab=26.43 E-value=43 Score=21.00 Aligned_cols=15 Identities=40% Similarity=0.758 Sum_probs=12.2
Q ss_pred CeE--eCCEEeeeeEEE
Q psy15526 53 GYK--LYNRVIRPALVG 67 (71)
Q Consensus 53 Gy~--~~~rvlRpA~V~ 67 (71)
||. .+|||.+||.|.
T Consensus 21 GyA~~vg~kvmKP~HVk 37 (158)
T 4agk_A 21 GYAVAMEGKVIKPLHVK 37 (158)
T ss_dssp EEEEEETTEEEEETTCC
T ss_pred eEEEEEcCeeecccccc
Confidence 675 489999999874
No 22
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=26.13 E-value=38 Score=18.93 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhCCceEeCCC-CCCCCcccCeeeEEEecCCCCCCeEEEEEecC
Q psy15526 2 TDGNLKKVFKRHGLEPINPL-GEKFDPNFHEALFEQEVEGKEANTVVVVSKIG 53 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~-G~~FDp~~heav~~~~~~~~~~~~I~~v~~~G 53 (71)
..++-.++|+++++++=... =..-||-.-. =+...|.|+.+.|+.
T Consensus 18 s~eEk~~lL~~y~i~~~qLP~I~~~DPvar~-------~G~k~GdVvkI~R~S 63 (77)
T 1eik_A 18 NESEAKRVLKELDAHPEQLPKIKTTDPVAKA-------IGAKRGDIVKIIRKS 63 (77)
T ss_dssp CHHHHHHHHHHTTCCTTTSCCCBTTSHHHHG-------GGCCTTCEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCHHHCCeeeCcCHhhHH-------hCCCCCCEEEEEECC
Confidence 45678899999998644431 1234543221 156789999999875
No 23
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=25.38 E-value=29 Score=19.59 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCceEeCC-CCCCCCcccCeeeEEEecCCCCCCeEEEEEecC
Q psy15526 2 TDGNLKKVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIG 53 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~-~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~G 53 (71)
..++..++|++++++.-.- .=..+||-.. + -+..+|.|+++.|+.
T Consensus 24 s~eE~~~ll~~y~i~~~qLP~I~~~DPva~-~------~g~k~GdVvkI~R~S 69 (84)
T 4ayb_H 24 SIDEAYKILKELGIRPEQLPWIRASDPVAR-S------INAKPGDIIRIIRKS 69 (84)
T ss_dssp CHHHHHHHHHHHTCCGGGSCCEESSSHHHH-H------HTCCTTCEEEEEEEE
T ss_pred CHHHHHHHHHHhcCCHhHCCeecccCHhHH-h------hCCCCCCEEEEEEcC
Confidence 4567888999999864332 2246888322 1 156889999999873
No 24
>3r0r_A Porcine circovirus 2 (PCV2) capsid protein; viral jelly roll, beta barrel, ssDNA; 2.35A {Porcine circovirus 2}
Probab=23.99 E-value=16 Score=24.52 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=16.0
Q ss_pred EEEEecCeEeCCEEeeeeE
Q psy15526 47 VVVSKIGYKLYNRVIRPAL 65 (71)
Q Consensus 47 ~~v~~~Gy~~~~rvlRpA~ 65 (71)
..-+++||+++-|++||=-
T Consensus 142 r~~~r~gfr~hKRlfrPKP 160 (226)
T 3r0r_A 142 RHTITQPFSYHSRYFTPKP 160 (226)
T ss_dssp CEEEETTTCCEEEEECCEE
T ss_pred ceeecCCCccceeEeccCc
Confidence 5569999999999999943
No 25
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=23.91 E-value=18 Score=21.63 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhCCceEeCC-CCC-CCCcccCeeeEEEe
Q psy15526 2 TDGNLKKVFKRHGLEPINP-LGE-KFDPNFHEALFEQE 37 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~-~G~-~FDp~~heav~~~~ 37 (71)
+.+.+...+++|||+.... +-+ .+.+++-+|++...
T Consensus 99 v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~ 136 (143)
T 1win_A 99 VREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQ 136 (143)
T ss_dssp HHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCC
T ss_pred HHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHH
Confidence 4566777888999998887 433 45556666665543
No 26
>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} SCOP: b.47.1.3 PDB: 1ep6_A 3j0c_C
Probab=22.38 E-value=29 Score=21.77 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=11.9
Q ss_pred CeE--eCCEEeeeeEEE
Q psy15526 53 GYK--LYNRVIRPALVG 67 (71)
Q Consensus 53 Gy~--~~~rvlRpA~V~ 67 (71)
||. .+|||.+||.|.
T Consensus 20 GyA~~vg~kv~KP~HVk 36 (157)
T 1ep5_B 20 GYACVVGGKLFRPMHVE 36 (157)
T ss_dssp EEEEEETTEEEEETTCC
T ss_pred EEEEEEcCeeeccceec
Confidence 564 489999999874
No 27
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=21.97 E-value=66 Score=20.02 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccCee
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHEA 32 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~hea 32 (71)
+.+++.++|++.|++.+...|....+.+.-|
T Consensus 216 t~~el~~ll~~aGF~v~~~~~~~~~~~~~va 246 (263)
T 3pfg_A 216 TREQYERAFTAAGLSVEFMPGGPSGRGLFTG 246 (263)
T ss_dssp CHHHHHHHHHHTTEEEEEESSTTTSSCEEEE
T ss_pred cHHHHHHHHHHCCCEEEEeeCCCCCceeEEE
Confidence 3578999999999999888777655555333
No 28
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=21.21 E-value=49 Score=17.88 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCceEeCC
Q psy15526 4 GNLKKVFKRHGLEPINP 20 (71)
Q Consensus 4 ~~l~~~L~~~gv~~i~~ 20 (71)
.-+..+|++.|++.+++
T Consensus 5 ~~i~~iLk~~G~~~~~~ 21 (68)
T 1taf_A 5 QVIMSILKELNVQEYEP 21 (68)
T ss_dssp HHHHHHHHHTTCCCBCT
T ss_pred HHHHHHHHHCCCcccCH
Confidence 34678999999998876
No 29
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=21.02 E-value=1.2e+02 Score=17.40 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhCCceEeCCCCCCCCcccCeeeEEEecCCCCCCeEEEEEec
Q psy15526 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKI 52 (71)
Q Consensus 2 i~~~l~~~L~~~gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~ 52 (71)
+..|-..+|+++|.+++-..-..|+.. +-+ +-...+|.|+.|+++
T Consensus 3 t~~qr~~L~~~y~~~~LY~~t~~~~~t--q~~----dl~l~~GdlVAVl~k 47 (92)
T 1ug1_A 3 SGSSGASLLARYPPEKLFQAERNFNAA--QDL----DVSLLEGDLVGVIKK 47 (92)
T ss_dssp HHHHHHHHHHHSCGGGEEEESSCCCCC--SSS----CCCCCTTCEEEEEES
T ss_pred hHHHHHHHHhhCCchheEEeccCcCCC--Cce----eeeecCCCEEEEEec
Confidence 346777889999988876532223331 111 123567888888775
No 30
>2xqy_A GH, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Suid herpesvirus}
Probab=20.60 E-value=63 Score=24.39 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=16.6
Q ss_pred CCCcccC----eeeEEEecCCCCCCeEEEEE
Q psy15526 24 KFDPNFH----EALFEQEVEGKEANTVVVVS 50 (71)
Q Consensus 24 ~FDp~~h----eav~~~~~~~~~~~~I~~v~ 50 (71)
-|||+.| +.+.. .++|||+++.
T Consensus 505 fFdpn~~s~~thYLLL-----~pNGTVveI~ 530 (572)
T 2xqy_A 505 SFNPTLHGGDVKALML-----FPNGTVVDLL 530 (572)
T ss_dssp CSSSCCSCTTEEEEEE-----CSSCEEEEC-
T ss_pred CCCCccCCCcceEEEE-----cCCCEEEEEe
Confidence 4899999 77765 4788888875
No 31
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A
Probab=20.50 E-value=76 Score=21.62 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=18.5
Q ss_pred CCCeEEEEE-----ecCeEe--CCEEeeeeEEE
Q psy15526 42 EANTVVVVS-----KIGYKL--YNRVIRPALVG 67 (71)
Q Consensus 42 ~~~~I~~v~-----~~Gy~~--~~rvlRpA~V~ 67 (71)
+.+.+-.|. -.||.+ +|+|.+||.|.
T Consensus 111 E~D~~F~VknldGkV~GyAc~vggKVmKPlHVk 143 (264)
T 1kxf_A 111 EADRLFDVKNEDGDVIGHALAMEGKVMKPLHVK 143 (264)
T ss_dssp CCSCEEEEECTTCCEEEEEEEETTEEEEETTCC
T ss_pred hccceeeeeccCCceEEEEEEEcCeeccccccc
Confidence 455555655 357765 89999999884
No 32
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=20.24 E-value=85 Score=22.51 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhCCc-eEeCCCCCCCCcccCe
Q psy15526 2 TDGNLKKVFKRHGL-EPINPLGEKFDPNFHE 31 (71)
Q Consensus 2 i~~~l~~~L~~~gv-~~i~~~G~~FDp~~he 31 (71)
+++++...|+++|+ ..++--...++|.+++
T Consensus 317 ~~~KIk~~l~s~Gf~~i~D~s~~~yepYfm~ 347 (407)
T 3bma_A 317 TVQKIRYQLESQGFTNIADFSKDGGEPFFMK 347 (407)
T ss_dssp HHHHHHHHHHTTTCCCEEECTTCTTSTTCBS
T ss_pred HHHHHHHHHHHCCCcceeeccccCCCCceee
Confidence 46889999999999 7777778889998874
Done!