RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15526
(71 letters)
>gnl|CDD|238252 cd00446, GrpE, GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of
ADP, which enables rebinding of ATP, one step in the
Hsp70 reaction cycle in protein folding. In eukaryotes,
only the mitochondrial Hsp70, not the cytosolic form, is
GrpE dependent.
Length = 137
Score = 100 bits (251), Expect = 3e-29
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
MT L V ++HG+E I P GE FDPN HEA+ + E TVV V + GYKL +RV
Sbjct: 70 MTLKQLLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRV 129
Query: 61 IRPALVGI 68
+RPA+V +
Sbjct: 130 LRPAMVVV 137
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 98.1 bits (245), Expect = 4e-28
Identities = 35/70 (50%), Positives = 47/70 (67%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
M L KV ++HG+E I P GE FDPN HEA+ + + K TVV V + GYKL++RV
Sbjct: 96 MILKQLLKVLEKHGVEKIEPEGEPFDPNLHEAVSQVPSDEKPPGTVVEVLQKGYKLHDRV 155
Query: 61 IRPALVGISK 70
+RPA+V +SK
Sbjct: 156 LRPAMVVVSK 165
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 92.4 bits (230), Expect = 1e-25
Identities = 36/71 (50%), Positives = 46/71 (64%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
MT L ++ G+E I P GEKFDPN HEA+ E E E NTVV V + GYKL +RV
Sbjct: 122 MTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRV 181
Query: 61 IRPALVGISKS 71
+RPA+V ++K
Sbjct: 182 LRPAMVKVAKK 192
>gnl|CDD|172630 PRK14141, PRK14141, heat shock protein GrpE; Provisional.
Length = 209
Score = 77.0 bits (190), Expect = 2e-19
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
MT+ + +RHG++ ++P G+KFDPNFH+A+FE NTVV V + GY + RV
Sbjct: 122 MTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERV 181
Query: 61 IRPALVGISK 70
+RPA+VG++K
Sbjct: 182 LRPAMVGVAK 191
>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional.
Length = 185
Score = 74.2 bits (183), Expect = 2e-18
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
+T L F++ + INP+GEKFDP+ H+A+ E E NTVV V + GY + +RV
Sbjct: 115 LTLKQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPAEQ-EPNTVVAVLQKGYTIADRV 173
Query: 61 IRPALVGISK 70
+RPALV ++
Sbjct: 174 LRPALVTVAA 183
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 69.6 bits (171), Expect = 9e-17
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
M L + K+ G+E I +GE+FDPN H+A+ + E E E+N VV + GYKL +RV
Sbjct: 122 MVHRQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRV 181
Query: 61 IRPALV 66
IRP++V
Sbjct: 182 IRPSMV 187
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 69.2 bits (170), Expect = 1e-16
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 12 RHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70
+ G+E + P+GE F+P H+A+ QE E E NTV++V + GY L R++RPA+V +SK
Sbjct: 135 KFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLLRPAMVMVSK 193
>gnl|CDD|237627 PRK14155, PRK14155, heat shock protein GrpE; Provisional.
Length = 208
Score = 66.9 bits (163), Expect = 2e-15
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 1 MTDGNLKKVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNR 59
MT+ L F+R+GL+ I+P G+KFDP+ H+A+ EQ A V+ V + GY+L R
Sbjct: 101 MTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGR 160
Query: 60 VIRPALVGIS 69
++RPA+V ++
Sbjct: 161 LVRPAMVAVA 170
>gnl|CDD|172640 PRK14151, PRK14151, heat shock protein GrpE; Provisional.
Length = 176
Score = 66.0 bits (161), Expect = 2e-15
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 11 KRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70
KR+ LE ++P GE F+P H+A+ QE E N+V+ V + GY L R++RPA+V +SK
Sbjct: 116 KRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVVSK 175
Query: 71 S 71
+
Sbjct: 176 A 176
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 62.2 bits (151), Expect = 7e-14
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 5 NLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPA 64
L +V RHG+E I L E FDPNFH A+ + + E KE +V V + GYK RV+RPA
Sbjct: 125 KLHEVLARHGIEGIECLEE-FDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPA 183
Query: 65 LVGISKS 71
+V I+K+
Sbjct: 184 MVSIAKN 190
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional.
Length = 199
Score = 60.1 bits (145), Expect = 5e-13
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 15 LEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70
+E I+PLG+ FDP HEA+ Q G N+V+ V + GYKL +RVIRPA V +S
Sbjct: 143 VEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARVIVST 198
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 59.5 bits (144), Expect = 7e-13
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKE-ANTVVVVSKIGYKLYNR 59
MT +L K K HG+ I GEKFDP H+A+ E + + VV V + GY+ +R
Sbjct: 124 MTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDR 183
Query: 60 VIRPALV 66
+RPA+V
Sbjct: 184 TLRPAMV 190
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional.
Length = 194
Score = 59.1 bits (143), Expect = 1e-12
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 9 VFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGI 68
+ +++GLE I GE+FDP+ HEA+ E NT+V V K GY L ++VIRPA+V +
Sbjct: 126 ILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRPAMVSV 185
Query: 69 SKS 71
+++
Sbjct: 186 ARN 188
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 56.9 bits (137), Expect = 7e-12
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 6 LKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPAL 65
KK+ + G++ I G+ FDP H A+ ++EVEGK+ N ++ V + GY L ++VIRP+L
Sbjct: 132 FKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRPSL 191
Query: 66 VGISK 70
V ++K
Sbjct: 192 VKVAK 196
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 56.5 bits (136), Expect = 1e-11
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MTDGNLKKVFKRHGLEPIN-PLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNR 59
MT L K+ G+ P+ G FDP +H+A+ + E +E NTVV V + GY L R
Sbjct: 124 MTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNER 183
Query: 60 VIRPALVGISK 70
++RPA+V ++
Sbjct: 184 LLRPAMVSVAT 194
>gnl|CDD|237630 PRK14161, PRK14161, heat shock protein GrpE; Provisional.
Length = 178
Score = 55.8 bits (134), Expect = 2e-11
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MTDGNLKKVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNR 59
MT L KVF +H +E I P +G FD N H A+ + E N+++ + + GYK+ +R
Sbjct: 106 MTKDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDR 165
Query: 60 VIRPALVGISK 70
++RPA V + K
Sbjct: 166 LLRPATVQVVK 176
>gnl|CDD|237625 PRK14147, PRK14147, heat shock protein GrpE; Provisional.
Length = 172
Score = 55.3 bits (133), Expect = 3e-11
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
+T L KV +GL ++P+G+ F+P H+A+ + E EG VV V + GY L R+
Sbjct: 101 LTYKQLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERL 160
Query: 61 IRPALVGISK 70
+RPALV ++K
Sbjct: 161 LRPALVVVAK 170
>gnl|CDD|172647 PRK14159, PRK14159, heat shock protein GrpE; Provisional.
Length = 176
Score = 53.5 bits (128), Expect = 1e-10
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 8 KVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 67
K ++HG+ I E FDPN HEA+F + E ++ VV V + GYK+ +RVIRP V
Sbjct: 115 KKLEKHGVALIKEEKE-FDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVS 173
Query: 68 ISK 70
++K
Sbjct: 174 VAK 176
>gnl|CDD|237624 PRK14143, PRK14143, heat shock protein GrpE; Provisional.
Length = 238
Score = 54.0 bits (130), Expect = 2e-10
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 6 LKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPAL 65
L V KR G+ P+ +G++FDPN HEA+ + + + V+ + GY L RV+R A+
Sbjct: 158 LVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVLRHAM 217
Query: 66 VGIS 69
V +S
Sbjct: 218 VKVS 221
>gnl|CDD|172637 PRK14148, PRK14148, heat shock protein GrpE; Provisional.
Length = 195
Score = 51.3 bits (122), Expect = 1e-09
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
+T L + K++G+E ++P GEKFDPN HEA+ E NT+ V + GY L R+
Sbjct: 125 LTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRI 184
Query: 61 IRPALVGISKS 71
+R A V I K+
Sbjct: 185 VRAAKVVIVKN 195
>gnl|CDD|237626 PRK14154, PRK14154, heat shock protein GrpE; Provisional.
Length = 208
Score = 46.7 bits (110), Expect = 6e-08
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 6 LKKVFKRHGLEPINP-LGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPA 64
L +HG++ INP G+ FDP HEA+ Q V + +T++ V + GY+L RV+R A
Sbjct: 143 LHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAA 202
Query: 65 LV 66
V
Sbjct: 203 RV 204
>gnl|CDD|184543 PRK14157, PRK14157, heat shock protein GrpE; Provisional.
Length = 227
Score = 46.1 bits (109), Expect = 9e-08
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 8 KVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVG 67
K F++ G+E GE FDP H+A+ + E TV V + GY++ +RVIR A V
Sbjct: 162 KAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVV 221
Query: 68 IS 69
++
Sbjct: 222 VA 223
>gnl|CDD|184546 PRK14163, PRK14163, heat shock protein GrpE; Provisional.
Length = 214
Score = 44.7 bits (105), Expect = 3e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 5 NLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPA 64
+L+ + GL+ GE FDP HEAL T V + + GY++ R IRPA
Sbjct: 122 SLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPA 181
Query: 65 LVGISK 70
V +++
Sbjct: 182 RVAVAE 187
>gnl|CDD|237632 PRK14164, PRK14164, heat shock protein GrpE; Provisional.
Length = 218
Score = 42.9 bits (101), Expect = 1e-06
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 6 LKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPAL 65
L V +E G+ FDP HEA+ Q++ + + V + GY++ +RV+R A+
Sbjct: 154 LTNVLAGLKVEKFGEEGDAFDPEIHEAV--QDLSSGDEKVLGTVLRKGYRMGDRVLRTAM 211
Query: 66 VGI 68
V I
Sbjct: 212 VII 214
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 42.1 bits (99), Expect = 2e-06
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKE---ANTVVVVSKIGYKLY 57
M +L + K G+E + + FD N H A+ Q + + A+++ V + GYKL+
Sbjct: 109 MVQESLIQALKEEGVEEVA--VDSFDHNLHMAV--QTLPADDEHPADSIAQVFQKGYKLH 164
Query: 58 NRVIRPALV 66
R++RPA+V
Sbjct: 165 ERLLRPAMV 173
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional.
Length = 197
Score = 41.6 bits (97), Expect = 4e-06
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 9 VFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGI 68
V ++ G+E I DPN H+A+ E + V+ + + GY L R IR A+V +
Sbjct: 133 VVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTV 192
Query: 69 SKS 71
+K+
Sbjct: 193 AKA 195
>gnl|CDD|237623 PRK14142, PRK14142, heat shock protein GrpE; Provisional.
Length = 223
Score = 41.1 bits (96), Expect = 7e-06
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 14 GLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVV--VSKIGYKLYNRVIRPALVGI 68
GL GE FDP HEA+ + E +G + + V+ V + GY+L +V+R ALVG+
Sbjct: 125 GLVAFGAEGEDFDPVLHEAV-QHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGV 180
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 40.1 bits (94), Expect = 2e-05
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
MT K ++ G+E I +FDPN H A+ E E N +V V + GYK ++V
Sbjct: 143 MTVKQFKTSLEKLGVEEI-STEGEFDPNLHNAVMHVEDENYGENEIVEVFQKGYKRGDKV 201
Query: 61 IRPALVGISK 70
IR ++V ++
Sbjct: 202 IRYSMVKVAN 211
>gnl|CDD|172635 PRK14146, PRK14146, heat shock protein GrpE; Provisional.
Length = 215
Score = 32.4 bits (73), Expect = 0.008
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 9 VFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLY----NRVIRPA 64
V ++ + +P GE FDP EAL +E + TV+ V + GY +RPA
Sbjct: 147 VLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTLRPA 206
Query: 65 LVGISK 70
V I K
Sbjct: 207 RVRIGK 212
>gnl|CDD|239000 cd02045, antithrombin-III_like, Antithrombin is a serine proteinase
inhibitor (serpin) which controls the process of
coagulation. It is the most important anticoagulant
molecule in mammalian circulation systems, controlled by
its interaction with the co-factor, heparin, which
accelerates its interaction with target proteases, such
as thrombin and factor Xa. This subgroup corresponds to
clade C of the serpin superfamily.
Length = 381
Score = 27.5 bits (61), Expect = 0.41
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 29 FHEALFEQEVEGKEANTVVVVSKIGYKL-YNRVI----RPALVGISKS 71
FH+A E EG EA+ V G L NR+I RP L+ I +
Sbjct: 323 FHKAFLEVNEEGSEASAATAVVITGRSLNINRIIFVANRPFLLFIREV 370
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 27.0 bits (60), Expect = 0.66
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 8 KVFKRHGLEPINPLGEK--FDPNFHEALFEQEVEGKEANTVVV 48
+V KRH LE INP+ + ++ E Q ++ +A +V
Sbjct: 308 EVGKRHNLEFINPVDDDGTYNEEAPEF---QGLKRFKARKKIV 347
>gnl|CDD|222651 pfam14286, DHHW, DHHW protein. This family of proteins is found in
bacteria. Proteins in this family are typically between
366 and 404 amino acids in length. There is a conserved
DHHW motif.
Length = 378
Score = 26.2 bits (58), Expect = 1.5
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 16 EPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYN 58
DP+ + +V+G+ N V V Y LY
Sbjct: 105 SSAETTVIPVDPDDSVVFDDGKVQGEIQNGVYVYGGRAYSLYY 147
>gnl|CDD|176740 cd08326, CARD_CASP9, Caspase activation and recruitment domain of
Caspase-9. Caspase activation and recruitment domain
(CARD) similar to that found in caspase-9 (CASP9, MCH6,
APAF3), which interacts with the CARD of apoptotic
protease-activating factor 1 (APAF-1). Caspases are
aspartate-specific cysteine proteases with functions in
apoptosis and immune signaling. Initiator caspases are
the first to be activated following death- or
inflammation-inducing signals. Caspase-9 is the
initiator caspase associated with the intrinsic or
mitochondrial pathway of apoptosis, induced by many
pro-apoptotic signals. Together with APAF-1, it forms
the heptameric 'apoptosome' in response to the release
of cytochrome c from mitochondria. Activated caspase-9
cleaves and activates downstream effector caspases,
like caspase-3, caspase-6, and caspase-7, resulting in
apoptosis. In general, CARDs are death domains (DDs)
associated with caspases. They are known to be
important in the signaling pathways for apoptosis,
inflammation and host-defense mechanisms. DDs are
protein-protein interaction domains found in a variety
of domain architectures. Their common feature is that
they form homodimers by self-association or
heterodimers by associating with other members of the
DD superfamily including PYRIN and DED (Death Effector
Domain). They serve as adaptors in signaling pathways
and can recruit other proteins into signaling
complexes.
Length = 84
Score = 25.1 bits (55), Expect = 2.5
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 7 KKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEA 43
+ VF +E I G + D + L + E GK+A
Sbjct: 28 RGVFTPDMIEEIQAAGSRRDQA-RQLLIDLETRGKQA 63
>gnl|CDD|215800 pfam00221, Lyase_aromatic, Aromatic amino acid lyase. This family
includes proteins with phenylalanine ammonia-lyase,
EC:4.3.1.24, histidine ammonia-lyase, EC:4.3.1.3, and
tyrosine aminomutase, EC:5.4.3.6, activities.
Length = 477
Score = 24.7 bits (55), Expect = 4.7
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 7 KKVFKRHGLEPINPLGEK 24
+ R GLEP+ LG K
Sbjct: 170 AEALARAGLEPL-ELGPK 186
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 24.7 bits (55), Expect = 4.8
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 11 KRHGLEPINPLGEK--FDPNFHEALFE-QEVEGKEANTVVV 48
+++GLE +NP+ + + F V +AN ++
Sbjct: 340 QKYGLEVLNPVDDDGRYTEEAPL--FAGLFVF--KANPKII 376
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 24.2 bits (53), Expect = 6.0
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 21 LGEKFDPNFHEALFEQ---EVEGKEANTV--VVVSKIGYKLYNRVIRP 63
G+ F P+ E+ E++ E + +S +G LY +
Sbjct: 106 FGKNFTPDEARKFIEEQAAEIDIAEPQNLEEQAISLVGRDLYEAFFKG 153
>gnl|CDD|224707 COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer
membrane].
Length = 230
Score = 24.1 bits (53), Expect = 6.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 1 MTDGNLKKVFKRHGLEPINP 20
M G +K + G+E + P
Sbjct: 129 MEQGFYRKRLEEKGIEVVVP 148
>gnl|CDD|226402 COG3885, COG3885, Uncharacterized conserved protein [Function
unknown].
Length = 261
Score = 24.0 bits (52), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 13 HGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVS 50
HG E I+P E+ ++A+ E + K + T VV+S
Sbjct: 10 HGDEIIDPEDEE-SRKLNKAIKEIASDDKGSETYVVIS 46
>gnl|CDD|220491 pfam09958, DUF2192, Uncharacterized protein conserved in archaea
(DUF2192). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 231
Score = 23.8 bits (52), Expect = 8.2
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 12/53 (22%)
Query: 6 LKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYN 58
L++V++ G++P L L++ KE ++ VV K G L
Sbjct: 35 LQEVYEEKGIKPFRGLSP-------PDLYD-----KELASLYVVGKYGLGLDE 75
>gnl|CDD|176651 cd06139, DNA_polA_I_Ecoli_like_exo, DEDDy 3'-5' exonuclease
domain of Escherichia coli DNA polymerase I and similar
bacterial family-A DNA polymerases. Escherichia
coli-like Polymerase I (Pol I), a subgroup of family-A
DNA polymerases, contains a DEDDy-type DnaQ-like 3'-5'
exonuclease domain in the same polypeptide chain as the
polymerase domain. The exonuclease domain contains
three conserved sequence motifs termed ExoI, ExoII and
ExoIII, with a specific YX(3)D pattern at ExoIII. These
motifs are clustered around the active site and contain
four conserved acidic residues that serve as ligands
for the two metal ions required for catalysis. The
3'-5' exonuclease domain of DNA polymerases has a
fundamental role in reducing polymerase errors and is
involved in proofreading activity. E. coli DNA Pol I is
involved in genome replication but is not the main
replicating enzyme. It is also implicated in DNA
repair.
Length = 193
Score = 24.0 bits (53), Expect = 8.3
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 5 NLK---KVFKRHGLEPINPLGEKFD 26
NLK V HG+E P FD
Sbjct: 74 NLKFDLHVLANHGIELRGPA---FD 95
>gnl|CDD|237331 PRK13280, PRK13280, N-glycosylase/DNA lyase; Provisional.
Length = 269
Score = 23.8 bits (52), Expect = 9.5
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 6 LKKVFKRHGLEPINPLGEKFDPNFH--EALFEQEVEGKEANTVVVVSKIGYKL 56
L ++ + G+E + E+ DP + E L E E A V+ + + Y+L
Sbjct: 10 LGEILRELGIEGALEIEERVDPQYKAVENLVESLGEDLFAKLVIANALVSYQL 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.138 0.392
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,688,848
Number of extensions: 282927
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 48
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)