RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15526
(71 letters)
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 104 bits (262), Expect = 1e-30
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
+T ++ V ++ G+E I DPN H+A+ E + V+ + + GY L R
Sbjct: 125 LTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRT 184
Query: 61 IRPALVGISK 70
IR A+V ++K
Sbjct: 185 IRAAMVTVAK 194
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 100 bits (250), Expect = 1e-28
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
M +L K+ G+E I +G+ FDP H+A+ + E EG E NTVV + GYKL +RV
Sbjct: 144 MVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRV 203
Query: 61 IRPALVGISK 70
+RPA+V +S+
Sbjct: 204 LRPAMVKVSQ 213
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 88.5 bits (220), Expect = 2e-24
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 1 MTDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRV 60
++ G+E + GE FDP +HEA+ E V V + G+++ +
Sbjct: 102 AIRDGFFRILAGLGVEEVPGEGEAFDPRYHEAVGLLP---GEPGKVAKVFQRGFRMGEAL 158
Query: 61 IRPALVGISK 70
+RPA V + +
Sbjct: 159 VRPARVAVGE 168
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Length = 689
Score = 25.7 bits (56), Expect = 1.4
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 25 FDPNFHEALFEQEVEGKEANTVVVVSKIGY 54
+ H L E ++GK ++ K G+
Sbjct: 301 YTATQHMILAELPIDGKPRKVLMQAPKNGF 330
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas
putida} SCOP: a.3.1.6 b.70.1.1
Length = 668
Score = 25.3 bits (55), Expect = 1.7
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 25 FDPNFHEALFEQEVEGKEANTVVVVSKIGY 54
F L E ++GK ++ K G+
Sbjct: 296 FTATQQITLAELNIDGKPRKVLMQAPKNGF 325
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN
protein, ABC transporter, transport protein, ligand,
metal- protein; HET: CIT; 1.69A {Methanosarcina
acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Length = 354
Score = 25.5 bits (55), Expect = 1.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 7 KKVFKRHGLEPINP 20
+++F +G PI P
Sbjct: 323 QQIFIENGQPPIVP 336
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 24.5 bits (54), Expect = 3.3
Identities = 8/12 (66%), Positives = 8/12 (66%), Gaps = 2/12 (16%)
Query: 19 NPL--GEKFDPN 28
NP G KFDPN
Sbjct: 418 NPQFEGYKFDPN 429
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 24.5 bits (54), Expect = 3.4
Identities = 5/12 (41%), Positives = 6/12 (50%), Gaps = 2/12 (16%)
Query: 19 NPL--GEKFDPN 28
NP +KFD
Sbjct: 407 NPASQAKKFDAT 418
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 24.4 bits (54), Expect = 3.6
Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 2/12 (16%)
Query: 19 NPL--GEKFDPN 28
NP GEKFD
Sbjct: 400 NPTTQGEKFDHE 411
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 24.4 bits (54), Expect = 3.9
Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 2/12 (16%)
Query: 19 NPL--GEKFDPN 28
NP EKFDP
Sbjct: 366 NPWKQQEKFDPE 377
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein,
nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A
{Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB:
1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Length = 420
Score = 24.4 bits (54), Expect = 4.3
Identities = 6/12 (50%), Positives = 8/12 (66%), Gaps = 2/12 (16%)
Query: 19 NPL--GEKFDPN 28
NP+ GE+ DP
Sbjct: 369 NPVLQGERHDPE 380
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 23.6 bits (51), Expect = 7.4
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 6 LKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVS 50
L + ++ G E + F + E EG VV+
Sbjct: 171 LMDLMRKAGFEEFKVVQTLFKHPSELSEIEPVKEGYGEGAFVVIR 215
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 23.3 bits (51), Expect = 8.5
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 8 KVFKRHGLEPINPLGEK 24
+ + +GL + + E+
Sbjct: 330 ETARVYGLPLLKTVDEE 346
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 23.2 bits (50), Expect = 9.4
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 6 LKKVFKRHGLEPINPLGEKFDPNFHEALFEQ 36
+ ++F + G D +E L E+
Sbjct: 168 MLRMFLKAGYSISKVDRVYVDHKMYEPLIEE 198
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 23.2 bits (51), Expect = 9.9
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 8 KVFKRHGLEPINPLGEKFDPNFHEALFE-QEVEGKEANTVVV 48
+ + +GL + + E + F+ +EAN ++
Sbjct: 131 ETARVYGLPLLKTVDE--EGKLLVEPFKGLYF--REANRAIL 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.392
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,126,061
Number of extensions: 55647
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 20
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)