RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15526
(71 letters)
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange
factor GrpE {Escherichia coli [TaxId: 562]}
Length = 59
Score = 80.0 bits (198), Expect = 9e-23
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 15 LEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVIRPALVGISK 70
+E I DPN H+A+ E + V+ + + GY L R IR A+V ++K
Sbjct: 1 VEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAK 56
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase
TM1293 {Thermotoga maritima [TaxId: 2336]}
Length = 208
Score = 24.3 bits (51), Expect = 1.3
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 2 TDGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVS 50
+ L + ++ G E + F + E EG VV+
Sbjct: 156 STEELMDLMRKAGFEEFKVVQTLFKHPSELSEIEPVKEGYGEGAFVVIR 204
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella
typhimurium [TaxId: 90371]}
Length = 309
Score = 23.7 bits (50), Expect = 2.3
Identities = 4/24 (16%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 7 KKVFKRHGLEPINP-LGEKFDPNF 29
+++ ++ P + + +K+D F
Sbjct: 252 QEIAAKNFYRPRDADVAKKYDDAF 275
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 23.9 bits (50), Expect = 2.5
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 6 LKKVFKRHGLEPIN-PLGEKFD 26
L+K+F + + P E
Sbjct: 25 LRKLFSLKNYQEVMPPSFEYTQ 46
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
{Helicobacter pylori [TaxId: 210]}
Length = 217
Score = 23.6 bits (50), Expect = 2.8
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 3 DGNLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSKIGYKLYNRVI 61
D K+ G+E + ++ F + + E + Y ++ I
Sbjct: 149 DKYSYLFLKKLGIEIEDY--DELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKI 205
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 23.5 bits (49), Expect = 3.2
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 6 LKKVFKRHGLEPIN-PLGEKFD 26
++ + G I+ P E D
Sbjct: 28 AEEAAEAFGFRRIDFPSLEYLD 49
>d2f6sa1 a.265.1.1 (A:1-177) Cell filamentation protein Fic
{Helicobacter pylori [TaxId: 210]}
Length = 177
Score = 23.0 bits (49), Expect = 3.5
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 5 NLKKVFKRHGLEPINPLGEKFDPNFHEALFEQEVEGKEANTVVVVSK 51
K + + ++ I K H LFE E ++K
Sbjct: 10 KAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAK 56
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 23.4 bits (49), Expect = 3.7
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 6 LKKVFKRHGLEPINP 20
+KV + G +
Sbjct: 26 ARKVLEAAGALELVT 40
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase
{Bacillus smithii [TaxId: 1479]}
Length = 229
Score = 23.0 bits (49), Expect = 3.8
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 12 RHGLEPINPLGEKFDPNFHE 31
G I + E+ D F
Sbjct: 10 MDGFGKIMYVKEEEDTYFKH 29
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 23.1 bits (48), Expect = 3.9
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 6 LKKVFKRHGLEPINP 20
LK V +G I
Sbjct: 26 LKNVLGSYGYSEIRL 40
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 23.0 bits (48), Expect = 5.1
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 6 LKKVFKRHGLEPIN-PLGEKFD 26
L ++ + + I P+ E D
Sbjct: 26 LDELMTFYNYKEIRTPIFESTD 47
>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase
{Lingulodinium polyedrum [TaxId: 160621]}
Length = 351
Score = 22.2 bits (47), Expect = 8.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 3 DGNLKKVFKRHGL-EPINPLGEKFDPNFHEALFEQEVEGKEAN 44
+G K F GL +P+ G+KF+ FH L E+ GK A+
Sbjct: 29 NGMHKPEFHEDGLHKPMEVGGKKFESGFHYLLECHELGGKNAS 71
>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA,
C-terminal domains {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 79
Score = 21.6 bits (46), Expect = 9.5
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 27 PNFHEALFEQEV 38
PN LF EV
Sbjct: 3 PNLVRKLFSLEV 14
>d1hh2p2 d.52.3.1 (P:199-276) Transcription factor NusA,
C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Length = 78
Score = 21.6 bits (46), Expect = 9.9
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 27 PNFHEALFEQEV 38
P F L + E+
Sbjct: 3 PEFVIGLMKLEI 14
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.138 0.392
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 272,350
Number of extensions: 10479
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 16
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)