Query psy15527
Match_columns 207
No_of_seqs 139 out of 1124
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 23:37:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 19.2 1.3E+02 0.0045 18.7 3.5 17 36-52 9-25 (54)
2 2k1a_A Integrin alpha-IIB; sin 18.8 1.2E+02 0.0041 17.8 3.1 16 37-52 8-23 (42)
3 1pfi_A Major coat protein of P 13.1 1.4E+02 0.0048 17.6 2.3 26 114-139 15-40 (46)
4 3gia_A Uncharacterized protein 10.3 7.1E+02 0.024 20.6 13.2 24 93-116 402-425 (444)
5 2k9p_A Pheromone alpha factor 8.4 4.8E+02 0.017 17.3 8.4 10 55-64 40-49 (80)
6 2vty_A Protein F1, F1L; BCL-2, 5.7 2.3E+02 0.0077 20.9 1.4 10 187-196 85-94 (182)
7 1waz_A MERF; protein structure 5.5 2.8E+02 0.0096 16.6 1.5 16 101-116 28-43 (46)
8 2l8s_A Integrin alpha-1; trans 4.7 6.9E+02 0.024 15.3 3.2 15 38-52 8-22 (54)
9 3arc_X Photosystem II PSBX pro 4.3 6.4E+02 0.022 14.4 3.3 33 16-64 3-35 (39)
10 3mp7_B Preprotein translocase 4.3 7.8E+02 0.027 15.3 3.5 31 113-143 22-52 (61)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.24 E-value=1.3e+02 Score=18.68 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHHHHH
Q psy15527 36 ALSDWLVLVSLFATIGL 52 (207)
Q Consensus 36 ~~~~~~~~~~~i~~i~~ 52 (207)
..+.|+..++.++.+.+
T Consensus 9 ~vp~wiIi~svl~GLll 25 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLL 25 (54)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH
Confidence 33456556665555443
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=18.82 E-value=1.2e+02 Score=17.79 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHHH
Q psy15527 37 LSDWLVLVSLFATIGL 52 (207)
Q Consensus 37 ~~~~~~~~~~i~~i~~ 52 (207)
.+.|...++.++.+.+
T Consensus 8 vp~wiIi~s~l~GLll 23 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLL 23 (42)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 3456556665555444
No 3
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=13.07 E-value=1.4e+02 Score=17.62 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=20.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHH
Q psy15527 114 SKRDFSVMGSGLFAALIILIGVSIIQ 139 (207)
Q Consensus 114 tk~df~~~~~~L~~~l~~liv~~l~~ 139 (207)
-|.|....++.+..++..+.+++++.
T Consensus 15 G~~Dm~si~~~IVGaLvil~VAGLiy 40 (46)
T 1pfi_A 15 GQGDMKAIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688889998888888888887763
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=10.32 E-value=7.1e+02 Score=20.57 Aligned_cols=24 Identities=17% Similarity=-0.045 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q psy15527 93 VLQAIFLTFLVVAGLTSFTFQSKR 116 (207)
Q Consensus 93 i~~A~~~T~~if~~ltl~a~~tk~ 116 (207)
...+.....+.+.....+-...||
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~ 425 (444)
T 3gia_A 402 FYGIIATFIGVLIFEIIYRKVTKR 425 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 333333334443333333333333
No 5
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=8.44 E-value=4.8e+02 Score=17.26 Aligned_cols=10 Identities=10% Similarity=0.188 Sum_probs=6.5
Q ss_pred HHHhhcccch
Q psy15527 55 GLHVKRLDHP 64 (207)
Q Consensus 55 ~l~~~~~~~p 64 (207)
++..++||+|
T Consensus 40 ~lltkkrrsp 49 (80)
T 2k9p_A 40 WITSRSRKTP 49 (80)
T ss_dssp HHHTCCSCCC
T ss_pred HHHhccccCh
Confidence 3445677888
No 6
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Probab=5.72 E-value=2.3e+02 Score=20.93 Aligned_cols=10 Identities=40% Similarity=0.992 Sum_probs=7.2
Q ss_pred HHHHHHHHHH
Q psy15527 187 YMDILNLFMY 196 (207)
Q Consensus 187 YlDiInlFl~ 196 (207)
|+|+||++-.
T Consensus 85 yidiin~ycd 94 (182)
T 2vty_A 85 YIDIINIYCD 94 (182)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 6788888753
No 7
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=5.53 E-value=2.8e+02 Score=16.55 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhccc
Q psy15527 101 FLVVAGLTSFTFQSKR 116 (207)
Q Consensus 101 ~~if~~ltl~a~~tk~ 116 (207)
..+|+++++|+...|+
T Consensus 28 La~Fi~lt~ya~~r~~ 43 (46)
T 1waz_A 28 LAIFIGLTIYAIQRKR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578888888886543
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=4.70 E-value=6.9e+02 Score=15.31 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHH
Q psy15527 38 SDWLVLVSLFATIGL 52 (207)
Q Consensus 38 ~~~~~~~~~i~~i~~ 52 (207)
+.|...++.++.+.+
T Consensus 8 p~WiIi~svl~GLLL 22 (54)
T 2l8s_A 8 PLWVILLSAFAGLLL 22 (54)
T ss_dssp CTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 446656665555443
No 9
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=4.34 E-value=6.4e+02 Score=14.43 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhccccchhhhhhhhHHHHHHHHHHHHHHHHHHhhcccch
Q psy15527 16 VQDIKDFVHRKSSENLDLEHALSDWLVLVSLFATIGLLIGLHVKRLDHP 64 (207)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~~p 64 (207)
.|++++|+.+ +.+.+.++.. ...++..-.++.|
T Consensus 3 TpSL~nFl~S---------------l~aG~vvvv~-i~~ali~VSq~D~ 35 (39)
T 3arc_X 3 TPSLKGFFIG---------------LLSGAVVLGL-TFAVLIAISQIDK 35 (39)
T ss_dssp CHHHHHHHHH---------------HHHHHHHHHH-HHHHHHHHHHHSC
T ss_pred ChhHHHHHHH---------------HHHHHHHHHH-HHHHheeEeccCc
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=4.27 E-value=7.8e+02 Score=15.29 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=0.0
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHHHhc
Q psy15527 113 QSKRDFSVMGSGLFAALIILIGVSIIQIFFN 143 (207)
Q Consensus 113 ~tk~df~~~~~~L~~~l~~liv~~l~~~f~~ 143 (207)
.+|-|-.-+....-...++..+.|++..+++
T Consensus 22 ~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 22 TKKPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!