Query psy15527
Match_columns 207
No_of_seqs 139 out of 1124
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 23:37:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15527.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15527hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a2ua_ b.60.1.1 (A:) Major ur 4.0 85 0.0062 20.4 -0.2 13 28-40 7-19 (158)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 3.3 3.4E+02 0.025 16.7 2.6 24 2-25 5-30 (158)
3 d2nn4a1 a.272.1.1 (A:1-62) Hyp 3.1 2.8E+02 0.021 16.1 1.7 11 164-174 4-14 (62)
4 d1q90r_ f.23.12.1 (R:) ISP sub 3.0 4.2E+02 0.031 13.8 3.4 27 62-88 10-36 (39)
5 d1hb6a_ a.11.1.1 (A:) Acyl-CoA 3.0 5.3E+02 0.038 15.3 3.1 11 182-192 68-78 (86)
6 d1wr0a1 a.7.14.1 (A:5-81) Vacu 2.8 5.4E+02 0.039 14.7 2.9 18 182-199 29-46 (77)
7 d1gm6a_ b.60.1.1 (A:) Salivary 2.3 1.4E+02 0.01 19.2 -0.6 12 29-40 4-15 (158)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 2.3 7.1E+02 0.052 14.8 4.5 12 66-77 68-79 (100)
9 d2gw6a1 c.52.2.1 (A:2-123) tRN 2.1 8.3E+02 0.06 15.7 3.3 24 167-190 11-35 (122)
10 d1wfda_ a.7.14.1 (A:) Hypothet 2.0 7.4E+02 0.054 14.6 2.9 17 183-199 34-50 (93)
No 1
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.95 E-value=85 Score=20.43 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=8.7
Q ss_pred cccchhhhhhhhH
Q psy15527 28 SENLDLEHALSDW 40 (207)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (207)
++|+|+|+..+.|
T Consensus 7 ~~nfdl~k~~G~W 19 (158)
T d2a2ua_ 7 RGNLDVAKLNGDW 19 (158)
T ss_dssp TTCCCGGGGCEEC
T ss_pred cccCChHHcCEEe
Confidence 4677777766665
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.26 E-value=3.4e+02 Score=16.73 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=16.8
Q ss_pred chHHHHHHHHH--HHchHHHHHHHhh
Q psy15527 2 QLLATVTVIIL--FTFVQDIKDFVHR 25 (207)
Q Consensus 2 QLliT~~~~~~--~~~~~~~~~~~~~ 25 (207)
+|+++.++..+ ..-.|.+.++..+
T Consensus 5 ELlVViaIIgILaaia~P~~~~~~~~ 30 (158)
T d2pila_ 5 ELMIVIAIVGILAAVALPAYQDYTAR 30 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777776554 4567888888776
No 3
>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus subtilis [TaxId: 1423]}
Probab=3.07 E-value=2.8e+02 Score=16.07 Aligned_cols=11 Identities=9% Similarity=0.555 Sum_probs=8.1
Q ss_pred HHHHHHHhhhC
Q psy15527 164 IFDTHMIMQKV 174 (207)
Q Consensus 164 ~~Dtq~i~~~~ 174 (207)
.||.|.+.+++
T Consensus 4 lYDVqQLLK~f 14 (62)
T d2nn4a1 4 FYDVQQLLKTF 14 (62)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHC
Confidence 68888887653
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.98 E-value=4.2e+02 Score=13.80 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=14.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy15527 62 DHPVNLYLLAGFTMVQAFTLGIVVTFY 88 (207)
Q Consensus 62 ~~p~~~~ll~~ft~~~g~~l~~~~~~~ 88 (207)
+.-.|+.++..-+...+-.+.+...++
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fF 36 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFF 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhhhhccceeEEe
Confidence 344566666666665555555544443
No 5
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.98 E-value=5.3e+02 Score=15.33 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH
Q psy15527 182 ATITLYMDILN 192 (207)
Q Consensus 182 ~Al~LYlDiIn 192 (207)
-|+..|++.++
T Consensus 68 eA~~~YI~~v~ 78 (86)
T d1hb6a_ 68 DAMKAYIDKVE 78 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 37777877765
No 6
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.77 E-value=5.4e+02 Score=14.68 Aligned_cols=18 Identities=17% Similarity=0.584 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15527 182 ATITLYMDILNLFMYILR 199 (207)
Q Consensus 182 ~Al~LYlDiInlFl~iL~ 199 (207)
.|+.+|.+=++.|+..++
T Consensus 29 ~A~~~Y~~a~~~l~~~l~ 46 (77)
T d1wr0a1 29 EALQLYQHAVQYFLHVVK 46 (77)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 588999999999888776
No 7
>d1gm6a_ b.60.1.1 (A:) Salivary lipocalin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=2.33 E-value=1.4e+02 Score=19.22 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=6.4
Q ss_pred ccchhhhhhhhH
Q psy15527 29 ENLDLEHALSDW 40 (207)
Q Consensus 29 ~~~~~~~~~~~~ 40 (207)
+|+|+|+..+.|
T Consensus 4 ~nfdl~k~~G~W 15 (158)
T d1gm6a_ 4 SNFDASKIAGEW 15 (158)
T ss_dssp SCCCSTTTCEEC
T ss_pred cCCChHHhCEEE
Confidence 455555555544
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.27 E-value=7.1e+02 Score=14.82 Aligned_cols=12 Identities=33% Similarity=0.315 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q psy15527 66 NLYLLAGFTMVQ 77 (207)
Q Consensus 66 ~~~ll~~ft~~~ 77 (207)
|..+=.++|+.=
T Consensus 68 n~~LEiiWTviP 79 (100)
T d3dtub2 68 NSPLEIAWTIVP 79 (100)
T ss_dssp CHHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 334555566543
No 9
>d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.05 E-value=8.3e+02 Score=15.73 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHHhh-hCCchHHHHHHHHHHHHH
Q psy15527 167 THMIMQ-KVSAEEYILATITLYMDI 190 (207)
Q Consensus 167 tq~i~~-~~~~~d~i~~Al~LYlDi 190 (207)
.|.++. +++++.-+-+|...|+|.
T Consensus 11 ~~e~~~l~~~D~~q~~~A~lVY~dL 35 (122)
T d2gw6a1 11 YLEMMELDIGDATQVYVAFLVYLDL 35 (122)
T ss_dssp HHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCchhhhhhhhHHHHHH
No 10
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.04 E-value=7.4e+02 Score=14.62 Aligned_cols=17 Identities=12% Similarity=0.542 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15527 183 TITLYMDILNLFMYILR 199 (207)
Q Consensus 183 Al~LYlDiInlFl~iL~ 199 (207)
|+.+|.+=++.++..++
T Consensus 34 A~~~Y~~aie~l~~~~~ 50 (93)
T d1wfda_ 34 ALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Done!