RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15527
(207 letters)
>gnl|CDD|198411 cd10429, GAAP_like, Golgi antiapoptotic protein. GAAP (or
transmembrane BAX inhibitor motif containing 4) is a
regulator of apoptosis that is related to the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. Human GAAP has been linked
to the modulation of intracellular fluxes of Ca(2+), by
suppressing influx from the extracellular medium and
reducing release from intracellular stores. A viral
homolog (vaccinia virus vGAAP) acts similar to its human
counterpart in inhibiting apoptosis.
Length = 233
Score = 196 bits (500), Expect = 1e-63
Identities = 98/206 (47%), Positives = 137/206 (66%), Gaps = 13/206 (6%)
Query: 1 MQLLATVTVIILFTFVQDIKDFVHRKSSENLDLEHALSDWLVLVSLFATIGLLIGLHVKR 60
+QLLAT V LF IK FV WL L+SL ++ LLI L+ KR
Sbjct: 40 VQLLATTAVSALFYLSPSIKTFVQS------------HPWLFLISLIGSLILLIALYWKR 87
Query: 61 LDHPVNLYLLAGFTMVQAFTLGIVVTFYSQMVVLQAIFLTFLVVAGLTSFTFQSKRDFSV 120
HPVNL LL+ FT+ +A+T+G+VV+FY +VLQA+ LT V GLT++TFQ+KRDFS
Sbjct: 88 HSHPVNLILLSLFTLCEAYTVGLVVSFYDGKIVLQALILTLGVFVGLTAYTFQTKRDFSS 147
Query: 121 MGSGLFAALIILIGVSIIQIFF-NNSLLDLVISFAGAIVFSLFIIFDTHMIMQKVSAEEY 179
G+ LF L LI +++I FF + +LV + GA++FS +I++DT +IM+++S +EY
Sbjct: 148 FGALLFILLWALILLALIFQFFPYSPTFELVYAGLGALLFSGYIVYDTQLIMKRLSPDEY 207
Query: 180 ILATITLYMDILNLFMYILRILEALN 205
ILA I+LY+DI+NLF+ ILRIL A+N
Sbjct: 208 ILAAISLYLDIINLFLSILRILAAMN 233
>gnl|CDD|198410 cd10428, LFG_like, Proteins similar to and including lifeguard
(LFG), a putative regulator of apoptosis. Lifeguard
(LFG) inhibits Fas-mediated apoptosis and interacts with
the death receptor FasR/CD95/Apo1. LFG has been shown to
interact with Bax and is supposed to be integral to
cellular membranes such as the ER. A close homolog,
PP1201 or RECS1, appears located in the Golgi
compartment and also interacts with the Fas receptor
CD95/Apo1. PP1201 is expressed in response to shear
stress.
Length = 217
Score = 127 bits (321), Expect = 9e-37
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 21/209 (10%)
Query: 1 MQLLATVTVIILFTFVQDIKDFVHRKSSENLDLEHALSDWLVLVSLFATIGLLIGL---- 56
+QLL TV VI LFTF +K FV + WL VS I L
Sbjct: 21 IQLLVTVAVIALFTFHDPVKKFVRKNP------------WLYYVSYIVFFITYIALACCE 68
Query: 57 HVKRLDHPVNLYLLAGFTMVQAFTLGIVVTFYSQMVVLQAIFLTFLVVAGLTSFTFQSKR 116
++R P NL LL FT+ ++ LG + +FY VL A+ +T +V GLT F FQ+K
Sbjct: 69 GLRR-RFPWNLILLGIFTLAMSYMLGTIASFYDTKAVLIAVGITAVVCLGLTLFAFQTKY 127
Query: 117 DFSVMGSGLFAALIILIGVSIIQIFFNNSLLDLVISFAGAIVFSLFIIFDTHMIMQK--- 173
DF+ G LF I+L+ I+ IFF L +V + GA++FSL++ DT ++M
Sbjct: 128 DFTSCGGVLFVLSIVLLIFGIVAIFFYVKWLHIVYASLGALLFSLYLAVDTQLLMGGRKY 187
Query: 174 -VSAEEYILATITLYMDILNLFMYILRIL 201
+S EEYI A + +Y+DI+N+F+YIL+++
Sbjct: 188 ELSPEEYIFAALNIYVDIVNIFLYILQLI 216
>gnl|CDD|198414 cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor
(BI)-1/YccA-like proteins. This family is comprised of
bacterial relatives of the mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins, which have been shown to have an antiapoptotic
effect either by stimulating the antiapoptotic function
of Bcl-2, a well-characterized oncogene, or by
inhibiting the proapoptotic effect of Bax, another
member of the Bcl-2 family. In plants, BI-1 like
proteins play a role in pathogen resistance. A
characterized prokaryotic member, Escherichia coli YccA,
has been shown to interact with ATP-dependent protease
FtsH, which degrades abnormal membrane proteins as part
of a quality control mechanism to keep the integrity of
biological membranes.
Length = 211
Score = 104 bits (262), Expect = 5e-28
Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 41 LVLVSLFATIGLLIGLH--VKRLDHPVNLYLLAGFTMVQAFTLGIVVTFYSQMVVLQAIF 98
L+ V L A + L+ GL + ++ L L F + TL ++ Y+ + QA F
Sbjct: 41 LMWVLLIAELALVFGLSFRINKMSVATALPLFFAFAALTGLTLSPILLVYTGASIAQAFF 100
Query: 99 LTFLVVAGLTSFTFQSKRDFSVMGSGLFAALIILIGVSIIQIFFNNSLLDLVISFAGAIV 158
T GL+ + + +K+D S +GS LF LI LI S++ IF +S L IS G ++
Sbjct: 101 TTAATFGGLSLYGYTTKKDLSFLGSFLFMGLIGLIIASLVNIFLQSSALQFAISAIGVLI 160
Query: 159 FSLFIIFDTHMIMQ-------KVSAEEYILATITLYMDILNLFMYILRIL 201
FS I +DT I + + ++ I+ ++LY+D +NLF+++LR+
Sbjct: 161 FSGLIAYDTQRIKRMYEAGGGESGYKDAIMGALSLYLDFINLFLFLLRLF 210
>gnl|CDD|198409 cd06181, BI-1-like, BAX inhibitor (BI)-1/YccA-like protein family.
Mammalian members of the BAX inhibitor (BI)-1 like
family of small transmembrane proteins have been shown
to have an antiapoptotic effect either by stimulating
the antiapoptotic function of Bcl-2, a
well-characterized oncogene, or by inhibiting the
proapoptotic effect of Bax, another member of the Bcl-2
family. Their broad tissue distribution and high degree
of conservation suggests an important regulatory role.
This superfamily also contains the lifeguard(LFG)-like
proteins and other subfamilies which appear to be
related by common descent and also function as
inhibitors of apoptosis. In plants, BI-1 like proteins
play a role in pathogen resistance. A prokaryotic
member, Escherichia coli YccA, has been shown to
interact with ATP-dependent protease FtsH, which
degrades abnormal membrane proteins as part of a quality
control mechanism to keep the integrity of biological
membranes.
Length = 202
Score = 104 bits (260), Expect = 7e-28
Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 6/171 (3%)
Query: 38 SDWLVLVSLFATIGLLIGL----HVKRLDHPVNLYLLAGFTMVQAFTLGIVVTFYSQMVV 93
W +L + ++ L + R PVNL LL GFT + + +G ++ FY ++
Sbjct: 32 PGWYWSPALMGLLTSMLALMATAAMIRAKMPVNLILLFGFTGLMGYVVGPLLFFYGPTIL 91
Query: 94 LQAIFLTFLVVAGLTSFTFQSKRDFSVMGSGLFAALIILIGVSIIQIFFNNSLLDLVISF 153
L+A+ T LV GLT + Q+++DF +G L A L L+ ++ FF + L LV +
Sbjct: 92 LRALGGTALVFFGLTVYALQARKDFLFLGGPLMAGLGFLLLSFLLNTFFYSPWLHLVAAA 151
Query: 154 AGAIVFSLFIIFDTHMIMQK--VSAEEYILATITLYMDILNLFMYILRILE 202
G ++F F+++DT +I+ K V E+YI A I+LY+DI+N+F+ +L IL
Sbjct: 152 VGLVLFCGFLLYDTQLIIHKAEVGPEDYINACISLYLDIINIFIRLLTILA 202
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 99.6 bits (249), Expect = 4e-26
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
Query: 35 HALSDWLVLVSLFATIGLLIGLHVK--RLDHPVNLYLLAGFTMVQAFTLGIVVTFYSQM- 91
W+ L+ A + + L + + L LL FT+++ TLG ++ Y+
Sbjct: 35 LFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAALALLFLFTLLEGLTLGPILLVYTAGS 94
Query: 92 VVLQAIFLTFLVVAGLTSFTFQSKRDFSVMGSGLFAALIILIGVSIIQIFFNNSLLDLVI 151
++LQA T + GL+ + +KRD S +G LFA LI LI S++ IF +S L L I
Sbjct: 95 IILQAFLGTAAIFGGLSLYALTTKRDLSFLGGFLFAGLIGLIVASLVNIFLPSSALSLAI 154
Query: 152 SFAGAIVFSLFIIFDTHMIMQKVS-AEEYILATITLYMDILNLFMYILRIL 201
S G ++FS I++DT I + + YILA ++LY+D +NLF+Y+LRIL
Sbjct: 155 SAIGVLIFSGLILYDTQRIKEGGETDDYYILAALSLYLDFINLFLYLLRIL 205
>gnl|CDD|223742 COG0670, COG0670, Integral membrane protein, interacts with FtsH
[General function prediction only].
Length = 233
Score = 90.4 bits (225), Expect = 2e-22
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 40 WLVLVSLFATIGLLIGLHVK-RLDHPVNLYLLAGFTMVQAFTLGIVVTFYSQM----VVL 94
V + A + + L K P L L +T + TL ++ Y+ + +
Sbjct: 59 PPGFVLIIAGLAGVFFLSRKINKSSPTALILFFVYTALVGLTLSPILLVYAAISGGDAIA 118
Query: 95 QAIFLTFLVVAGLTSFTFQSKRDFSVMGSGLFAALIILIGVSIIQIFFNNSLLDLVISFA 154
A +T LV L+ + + +KRD S +GS LF ALI LI S++ IF +S L L IS
Sbjct: 119 AAFGITALVFGALSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFLGSSALHLAISVL 178
Query: 155 GAIVFSLFIIFDTHMIM-QKVSAEEYILATITLYMDILNLFMYILRILEALNRQ 207
G ++FS I +DT I + I+ ++LY+D +NLF+ +LRIL L+ +
Sbjct: 179 GVLIFSGLIAYDTQNIKRMEGGERLAIMGALSLYLDFINLFLSLLRILGILSNR 232
>gnl|CDD|198415 cd10433, YccA_like, YccA-like proteins. A prokaryotic member of
the BAX inhibitor (BI)-1 like family of small
transmembrane proteins, Escherichia coli YccA, has been
shown to interact with ATP-dependent protease FtsH,
which degrades abnormal membrane proteins as part of a
quality control mechanism to keep the integrity of
biological membranes.
Length = 205
Score = 86.5 bits (215), Expect = 3e-21
Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 42 VLVSLFATIGLLIGLHVKRLDHPVNLYLLAGFTMVQAFTLGIVVTFYSQM-----VVLQA 96
+L++L GLL + R + + L+ FT +TLG ++ Y + +++ A
Sbjct: 38 LLLTLVGAYGLLFLIEKTR-NSAWGIVLVFAFTGFMGYTLGPILNMYLALPNGGQIIMTA 96
Query: 97 IFLTFLVVAGLTSFTFQSKRDFSVMGSGLFAALIILIGVSIIQIFFNNSLLDLVISFAGA 156
+ T + GL+++ +K+DFS +G LF I+L+ ++ IF L L IS A
Sbjct: 97 LGGTAAIFFGLSAYALTTKKDFSFLGGFLFVGAIVLLLAAVANIFLQIPALSLAISAAFV 156
Query: 157 IVFSLFIIFDTHMIMQKVSAEEYILATITLYMDILNLFMYILRILEALN 205
+ S FI++DT I+ YI+AT++LY+ I NLF+ +L +L A +
Sbjct: 157 LFSSGFILYDTSRIIHG-GETNYIMATVSLYVSIYNLFVSLLNLLGAFS 204
>gnl|CDD|198412 cd10430, BI-1, BAX inhibitor (BI)-1. Mammalian members of the BAX
inhibitor (BI)-1 like family of small transmembrane
proteins have been shown to have an antiapoptotic effect
either by stimulating the antiapoptotic function of
Bcl-2, a well-characterized oncogene, or by inhibiting
the proapoptotic effect of Bax, another member of the
Bcl-2 family. Their broad tissue distribution and high
degree of conservation suggests an important regulatory
role. In plants, BI-1 like proteins play a role in
pathogen resistance.
Length = 213
Score = 64.6 bits (158), Expect = 6e-13
Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 9/176 (5%)
Query: 35 HALSDWLVLVSLFATIGLLIGLHVKRLDH---PVNLYLLAGFTMVQAFTLGIVVTFYSQM 91
H + + L++ ++GL + L P L LL GF + +LG ++ +
Sbjct: 33 HMVINIGGLLTGLLSLGLSLWLAFTPSTGKNEPKRLGLLLGFAFLTGASLGPLLDLVIAI 92
Query: 92 ---VVLQAIFLTFLVVAGLTSFTFQSK-RDFSVMGSGLFAALIILIGVSIIQIFFNNSLL 147
+++ A T ++ A + +K R++ +G L +AL IL+ VS+ IF + L
Sbjct: 93 NPSIIVTAFLGTAVIFACFSLAALLAKRREYLYLGGLLSSALSILLLVSLANIFGGSKFL 152
Query: 148 DLVISFAGAIVFSLFIIFDTHMIMQKVSA--EEYILATITLYMDILNLFMYILRIL 201
+ G +VF F++FDT MI++K +YI + L++D + LF +L IL
Sbjct: 153 FQAELYLGLLVFCGFVLFDTQMIIEKAENGDRDYIWHALDLFVDFVALFRRLLIIL 208
>gnl|CDD|198413 cd10431, GHITM, Growth-hormone inducible transmembrane protein.
GHITM appears to be ubiquitiously expressed in mammalian
cells and expression has also been observed in various
cancer cell lines. A cytoprotective function has been
suggested. It is closely related to the BAX inhibitor
(BI)-1 like family of small transmembrane proteins,
which have been shown to have an antiapoptotic effect.
Length = 264
Score = 46.6 bits (111), Expect = 2e-06
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 40 WLVL-VSLFATIGLLIGLHVKRLDHPVNLYLLA--GFTMVQAFTLGIVVTFYSQMVVLQA 96
WL + +L A IG + + LA G + VQ L + F ++++A
Sbjct: 80 WLAIGATLAAMIGSGMLVRSYTYPENPGAKHLAWLGHSGVQGAVLA-PLCFLGGPLLIRA 138
Query: 97 IFLTFLVVAGLTSFTFQSKRD-FSVMGSGLFAALIILIGVSIIQIFFNNSL-----LDLV 150
T +V GL++ + + F MG L L ++ S+ +F + L V
Sbjct: 139 ALYTAGIVGGLSTVAACAPSEKFLYMGGPLAIGLGVVFASSLGSMFLPPTTALGAGLYSV 198
Query: 151 ISFAGAIVFSLFIIFDTHMIMQKVSAEEY--------ILATITLYMDILNLFMYILRIL 201
+ G ++F F+++DT I+++ I A++++YMD +N+F+ ++ IL
Sbjct: 199 SLYGGLVLFGGFLLYDTQKIIKRAETHPLYGVRKYDPINASMSIYMDTINIFIRLVTIL 257
>gnl|CDD|182469 PRK10447, PRK10447, HflBKC-binding inner membrane protein;
Provisional.
Length = 219
Score = 41.0 bits (96), Expect = 2e-04
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 53 LIGLHVKRLDHPVNLYLLAGFTMVQAFTLGIVVTFYSQM----VVLQAIFLTFLVVAGLT 108
L+ L K + P + FT + LG ++ Y V+ A+ T LV +
Sbjct: 62 LMFLTYKTANKPTGILSAFAFTGFLGYILGPILNTYLSAGMGDVIALALGGTALVFFCCS 121
Query: 109 SFTFQSKRDFSVMGSGLFAALIILIGVSIIQIFFNNSLLDLVISFAGAIVFSLFIIFDTH 168
++ +++D S +G L A +++++ + IF L L IS ++ S I+F+T
Sbjct: 122 AYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILISSGAILFETS 181
Query: 169 MIMQKVSAEEYILATITLYMDILNLFMYILRIL 201
I+ YI AT++LY+ + N+F+ +L IL
Sbjct: 182 NIIHG-GETNYIRATVSLYVSLYNIFVSLLSIL 213
>gnl|CDD|235318 PRK04897, PRK04897, heat shock protein HtpX; Provisional.
Length = 298
Score = 32.2 bits (74), Expect = 0.16
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 125 LFAALIILIGVSIIQIFFNNSLLDLVISFAGAIVFSLFIIFD-THMIMQKVSAEE 178
+F L+ L+G ++ +F N+ L L+I+ ++++L +IF T+++M A E
Sbjct: 19 VFFLLLALVGAAVGYLFLNSGLGGLIIALIIGVIYALIMIFQSTNVVMSMNHARE 73
>gnl|CDD|226614 COG4129, COG4129, Predicted membrane protein [Function unknown].
Length = 332
Score = 30.0 bits (68), Expect = 0.83
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 1/116 (0%)
Query: 69 LLAGFTMVQAFTLGIVVTFYSQMVVLQAIFLTFLVVAGLTSFTFQSKRDFSVMGSGLFAA 128
L + LG ++ ++ Q +V+ + K + V+ +
Sbjct: 54 LKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLENGVVPITVGV- 112
Query: 129 LIILIGVSIIQIFFNNSLLDLVISFAGAIVFSLFIIFDTHMIMQKVSAEEYILATI 184
L IL+ I N L + + A + +L + + + + E ILA+I
Sbjct: 113 LHILVAAMIPLFLIFNRFLLVFVGVGVAFLVNLVMPPPDYELKLYRAKVEAILASI 168
>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
[Posttranslational modification, protein turnover,
chaperones].
Length = 436
Score = 30.0 bits (68), Expect = 0.98
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 13/133 (9%)
Query: 80 TLGIVVTFYSQMVVLQAIFLTFLVVAGLTSFTFQSKRDFSVMGSGLFAALIILIGVSIIQ 139
LG++ S + I L++ G F G L+I++G +I
Sbjct: 245 FLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFL--------GINWAGLLLIILGAILIV 296
Query: 140 I-FFNNSLLDLVISFAGAIVFSLFIIFDTHMIMQKVSAEEYILATITLYMDIL----NLF 194
F + + + L ++F + + VS ++ I + +
Sbjct: 297 AEAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSILFKVFLGRLPA 356
Query: 195 MYILRILEALNRQ 207
I +++ A +
Sbjct: 357 FKIYKLVRATKSK 369
>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
modified GGDEF domain and a DHH domain [Signal
transduction mechanisms].
Length = 655
Score = 28.8 bits (65), Expect = 2.3
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 112 FQSKRDFSVMGSGLFAALIILIGVSIIQIFFNNSLLDLVISFAGAIVFSLFIIFDT 167
F KR S + GL A IILI VS F N L + + ++ T
Sbjct: 4 FYHKRLLSYIFLGLIAFSIILIIVS----FSFNWWLSAIAVLLLVVFLIFLLLAFT 55
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 479
Score = 28.7 bits (65), Expect = 2.5
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 19 IKDFVHRKSSENLDLEHALSDWLVLVSLFATIGLLIGLHVKRLDHPVNLYLL--AGFT-- 74
++D L L +L ++A + + I L + D PV L A FT
Sbjct: 352 VQDLYQPWLRRRLSDSKLLRLSRLLTLVWAVVLVAIALLFQHTDQPVVELGLSIASFTYG 411
Query: 75 -MVQAFTLGIVVTFYSQMVVLQAIFLTFLVVAGLTSFTFQSKRDFSV 120
++ F LG++ SQ + A + FLV+ L F++
Sbjct: 412 GLLGVFLLGLLTKRASQRDAIAAFIVGFLVMLLLIFGVKFLGLLFAL 458
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 28.1 bits (63), Expect = 3.3
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 3/100 (3%)
Query: 67 LYLLAGFTMVQAFTLG-IVVTFYSQMVVLQAIFLTFLVVAGLTSFTFQSKRDFSVMGSGL 125
F LG I + + L + + L+ L + T + K + L
Sbjct: 35 KGGDKAFFSALGVLLGAISIQPKHSLKYLLLVAVIILLSYVLKNLTDKKKTVVPPIVVFL 94
Query: 126 FAALIILIGVSIIQIFFNNSLLDLVISFAGAIVFSLFIIF 165
AA+ + G ++ + + ++ F L+ IF
Sbjct: 95 EAAVYAIFGYLQNKLVTPLDFI--LSIVEASLSFVLYYIF 132
>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
A system-associated. Members of this protein family
occur, one to three members per genome, in the same
species of Euryarchaeota as contain the predicted
protein-sorting enzyme archaeosortase (TIGR04125) and
its cognate protein-sorting signal PGF-CTERM
(TIGR04126).
Length = 815
Score = 28.4 bits (64), Expect = 3.5
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 30/129 (23%)
Query: 9 VIILFTFVQDIKDFVHRKSSENLDLEHALSDWLVLVSLFATIGLLIGLHVKRLDHPVNLY 68
++ +FT VQ I D +S E L + A++ A + +L
Sbjct: 216 IVGVFTLVQFILDLFRGRSPEYLAIVGAVT------FAVAAVLVLP-------------- 255
Query: 69 LLAGFTMVQAFTLGIVVTFYS--QMVVLQAIFLTFLVVAGLTSFTFQSKRDFSVMGSGLF 126
F LG T+YS Q + L + L +++AGL+ F + + +
Sbjct: 256 --------FGFKLGFSATYYSLFQPLALLGVALGAVLLAGLSRFWERKDLPRYYYPAAVA 307
Query: 127 AALIILIGV 135
+ I V
Sbjct: 308 GLAALGILV 316
>gnl|CDD|236816 PRK10999, malF, maltose transporter membrane protein; Provisional.
Length = 520
Score = 26.8 bits (60), Expect = 8.6
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 68 YLLAGFTMVQAFTLGIVVTFYSQMVVLQAIFLTFLVVAGLTSFTFQSKRDF-------SV 120
+ + G ++ +VV Y+Q L AI L+++ L + F +++ + +
Sbjct: 20 WSVLG--LLGLLVGYLVVLMYAQGEYLFAI--LTLILSSLGLYIFANRKAYAWRYVYPGL 75
Query: 121 MGSGLFAALIILIGVSIIQIFFNN 144
G GLF ++ V I I F N
Sbjct: 76 AGMGLF---VLFPLVCTIAIAFTN 96
>gnl|CDD|205501 pfam13321, DUF4084, Domain of unknown function (DUF4084). This
family of Firmicute proteins is frequently associated
with the EAL, GGDEF and PAS families, pfam00563,
pfam00990, and pfam00989. The exact function is not
known.
Length = 304
Score = 26.8 bits (59), Expect = 8.6
Identities = 23/114 (20%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 86 TFYSQMVVLQAIFLTFLVVAGLTSFTFQSKRDFSVMGSGLFAALIILIGVSIIQI-FFNN 144
+F S +++ I+ T + ++SF + + ++G + +L+I +S+ + +++
Sbjct: 132 SFDSIFIIIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQSLVIYAVISLYRREQYSS 191
Query: 145 SLLDLVISFAGAIVFSLFIIFDTHMIMQKVSAEEYILATITLYMDILNLFMYIL 198
S + L+I F +V+ +F + ++ S Y++ T ++ + L+ +YIL
Sbjct: 192 SRISLIIGFTIILVYGYIHLFQLNAGIKTSSEVSYLIHTASILLIGLSSILYIL 245
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Escherichia
coli Wzx and related proteins from other gram-negative
bacteria are thought to act as flippases, assisting in
the membrane translocation of lipopolysaccharides
including those containing O-antigens. Proteins from the
MATE family are involved in exporting metabolites across
the cell membrane and are often responsible for
multidrug resistance (MDR).
Length = 402
Score = 26.7 bits (60), Expect = 9.4
Identities = 11/78 (14%), Positives = 30/78 (38%)
Query: 88 YSQMVVLQAIFLTFLVVAGLTSFTFQSKRDFSVMGSGLFAALIILIGVSIIQIFFNNSLL 147
++ + A+ L F + L FQ + ++ + +++I + L+
Sbjct: 108 LVLLLYILALSLPFSALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVLLGGGLI 167
Query: 148 DLVISFAGAIVFSLFIIF 165
+++ A V S ++
Sbjct: 168 GFALAYLIASVLSAILLL 185
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.335 0.146 0.409
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,933,413
Number of extensions: 1113107
Number of successful extensions: 3499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3235
Number of HSP's successfully gapped: 634
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (25.7 bits)