RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15527
         (207 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 30/143 (20%)

Query: 19  IKDFVHRKSSENL-DLEHALSDWLVLVSLFATIGLLIGLHVKR-LDHPVNL----YLL-A 71
           + D +   S+E L +L     D      +F       GL++   L++P N     YLL  
Sbjct: 184 VGDLIKF-SAETLSELIRTTLDA---EKVFTQ-----GLNILEWLENPSNTPDKDYLLSI 234

Query: 72  GFTMVQAFTLGIVVTFYSQMVVLQAIFLTFLVVAGLTSFTFQSK-RDFSVMGSGLFAALI 130
             +        I V    Q+    A ++    + G T    +S  +  +    GL  A+ 
Sbjct: 235 PISCP-----LIGVI---QL----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282

Query: 131 ILIGVSIIQIFFNNSLLDLVISF 153
           I    S  + FF +    + + F
Sbjct: 283 IAETDS-WESFFVSVRKAITVLF 304



 Score = 31.2 bits (70), Expect = 0.24
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 24/126 (19%)

Query: 46   LFATIGLLIGLHVKRLDHPVNLYLL----AGFTMVQAFTLGIVVTFYSQMVVLQAIFLTF 101
               T G  I L +   ++PVNL +      G  + + ++  I  T     +  + IF   
Sbjct: 1653 FKDTYGFSI-LDIVI-NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE- 1709

Query: 102  LVVAGLTSFTFQSKRDFSVMGSGLFA------ALIILIGVSIIQIFFNNSLLDLVISFAG 155
             +    TS+TF+S++        L A      A + L+  +  +   +  L+    +FAG
Sbjct: 1710 -INEHSTSYTFRSEKGL------LSATQFTQPA-LTLMEKAAFEDLKSKGLIPADATFAG 1761

Query: 156  AIVFSL 161
                SL
Sbjct: 1762 ---HSL 1764


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.335    0.146    0.409 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,119,515
Number of extensions: 183941
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 36
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.0 bits)