RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15527
         (207 letters)



>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 248

 Score = 25.6 bits (56), Expect = 4.4
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 92  VVLQAIFLTFLVVAGLTSFTFQSKRDFSVMGSGLFAALIILIGVSIIQIFFNNSLLDLVI 151
             +  +    +    +  +           G  LFA   +++  + + IF N        
Sbjct: 5   WSVLGLLGLLVGYLVVLMYAQ---------GEYLFAITTLILSSAGLYIFANRKAYAWRY 55

Query: 152 SFAGAIVFSLFIIF 165
            + G     LF++F
Sbjct: 56  VYPGMAGMGLFVLF 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.335    0.146    0.409 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 722,760
Number of extensions: 30987
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 11
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.9 bits)