BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15532
(60 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG D + +D +L V GV +RVADASV P + NP V+M E+CA ++
Sbjct: 473 MGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLI 526
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG D + +D +L V GV +RVADASV P + NP V+M E+CA ++
Sbjct: 473 MGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLI 526
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG D + +D +L V GV +RVADASV P + NP V+M E+CA ++
Sbjct: 473 MGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLI 526
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 8 EAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59
+ VVD +L VHG++ +RVADASV P +C + V EKCA M+ ++K
Sbjct: 523 QGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHK 574
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 9 AVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLD 56
VVD+ V+GV+ +RV D S+ PTQ++ + ++V A K + +L+
Sbjct: 530 GVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILE 577
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 9 AVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLD 56
VVD V+G + +RV D S+ PTQ++ + +++ A K A +LD
Sbjct: 534 GVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILD 581
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 6 DPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPI-SVVIMTAEKCAQ 52
DP+AVVD L + ++N+ V DAS+ P L PI + V+ AE A+
Sbjct: 472 DPDAVVDANLRLKALDNLFVVDASIMP-NLTAGPIHAAVLAIAETFAR 518
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
M P VVD L V GV+ +R+ D S+ P N + + + ++ A ++
Sbjct: 509 MSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLI 562
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 DDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
DD V G +N+ V D S+ P + NP + AE+ + ++ ++
Sbjct: 454 DDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 500
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 DDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
DD V G +N+ V D S+ P + NP + AE+ + ++ ++
Sbjct: 454 DDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 500
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 DDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
DD V G +N+ V D S+ P + NP + AE+ + ++ ++
Sbjct: 454 DDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 500
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 DDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
DD V G +N+ V D S+ P + NP + AE+ + ++ ++
Sbjct: 454 DDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 500
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 DDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
DD V G +N+ V D S+ P + NP + AE+ + ++ ++
Sbjct: 452 DDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 498
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 DDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
DD V G +N+ V D S+ P + NP + AE+ + ++ ++
Sbjct: 454 DDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 500
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 12 DDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
DD V G +N+ V D S+ P + NP + AE+ + ++ ++
Sbjct: 456 DDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 502
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 12 DDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
DD V G +N+ V D S+ P + +P + AE+ + ++ ++
Sbjct: 454 DDYGRVAGYKNLYVTDGSLIPGSVGVDPFVTITALAERNVERIIKQD 500
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 10 VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
V+D V G+ +RV D S FP +P +M +L +
Sbjct: 470 VLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSKILQE 517
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 12 DDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
DD V G +N+ V D S+ P + P + AE+ + ++ ++
Sbjct: 454 DDYGRVAGYKNLYVTDGSLIPGSVGVLPFVTITALAERNVERIIKQD 500
>pdb|1RJT|A Chain A, Nmr Structure Of Cxc Chemokine Cxcl11ITAC
Length = 73
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 19 GVENVRVAD---ASVFPTQLNCNPISVVIMTAEKCAQMVLD 56
GV+ V+VAD AS+ NC+ I V+I E Q L+
Sbjct: 15 GVKAVKVADIEKASIMYPSNNCDKIEVIITLKENKGQRCLN 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,572,126
Number of Sequences: 62578
Number of extensions: 36397
Number of successful extensions: 70
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 19
length of query: 60
length of database: 14,973,337
effective HSP length: 31
effective length of query: 29
effective length of database: 13,033,419
effective search space: 377969151
effective search space used: 377969151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)