BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15532
(60 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CMY2|BETA_STAES Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=betA PE=3 SV=1
Length = 572
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 484 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 538
>sp|Q5HL11|BETA_STAEQ Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=betA PE=3 SV=1
Length = 572
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 484 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 538
>sp|Q8NUM0|BETA_STAAW Choline dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=betA
PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|A8Z5A4|BETA_STAAT Choline dehydrogenase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=betA PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|Q6G664|BETA_STAAS Choline dehydrogenase OS=Staphylococcus aureus (strain MSSA476)
GN=betA PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|Q6GDJ1|BETA_STAAR Choline dehydrogenase OS=Staphylococcus aureus (strain MRSA252)
GN=betA PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|P60337|BETA_STAAN Choline dehydrogenase OS=Staphylococcus aureus (strain N315)
GN=betA PE=1 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|P60336|BETA_STAAM Choline dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=betA PE=1 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|A6QK99|BETA_STAAE Choline dehydrogenase OS=Staphylococcus aureus (strain Newman)
GN=betA PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|Q5HCU1|BETA_STAAC Choline dehydrogenase OS=Staphylococcus aureus (strain COL) GN=betA
PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|Q2YWJ5|BETA_STAAB Choline dehydrogenase OS=Staphylococcus aureus (strain bovine RF122
/ ET3-1) GN=betA PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|A5IW37|BETA_STAA9 Choline dehydrogenase OS=Staphylococcus aureus (strain JH9) GN=betA
PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|Q2FV11|BETA_STAA8 Choline dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325)
GN=betA PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|Q2FDP9|BETA_STAA3 Choline dehydrogenase OS=Staphylococcus aureus (strain USA300)
GN=betA PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|A6U4Z2|BETA_STAA2 Choline dehydrogenase OS=Staphylococcus aureus (strain JH1) GN=betA
PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|A7X6Z3|BETA_STAA1 Choline dehydrogenase OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=betA PE=3 SV=1
Length = 569
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGPASDP AVVD + VHG+EN+RV DAS P N N + V+M AEK A ++
Sbjct: 482 MGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADII 536
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1 MGPASDPEAVVDDQLL-VHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MGPASD +VVD + VHG+EN+RV DASV P N N S V+M AEK A ++ K
Sbjct: 479 MGPASDEMSVVDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAEKAADIIRGK 536
>sp|Q4L9D7|BETA_STAHJ Choline dehydrogenase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=betA PE=3 SV=1
Length = 568
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MGPASDP +VVD + VHG+EN+RV DAS P N N + V+M AEK A ++ K
Sbjct: 480 MGPASDPMSVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGK 537
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG SDP AVVD Q V GVEN+RV DAS+ P+ ++ N + IM AEK A ++
Sbjct: 518 MGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADII 571
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AV+D++ V G+ N+RV D+SVFPT N N + IM AE+ A ++L K
Sbjct: 477 MGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADLILHK 533
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AV+D++ V G+ N+RV D+SVFPT N N + IM AE+ A ++L K
Sbjct: 477 MGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADLILHK 533
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1 MGPASDPEAVVDDQLL-VHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MGPASD +VVD + VHG+EN+RV DASV P N N S V+M AE+ + ++ K
Sbjct: 479 MGPASDEMSVVDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAERASDIIRGK 536
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG SDP AVVD Q V GVEN+RV DAS+ P+ ++ N + IM AEK A ++
Sbjct: 523 MGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGNLNAPTIMIAEKAADVI 576
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG +SDP AVVD Q V GVEN+RV DAS+ P+ ++ N + +M AEK A ++
Sbjct: 520 MGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMIAEKAADII 573
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
MG DP AV+++ V G+E +RV D+S+FPT N N + IM AE+ A M+L
Sbjct: 477 MGSNDDPMAVLNEACQVRGIEGLRVVDSSIFPTIPNGNLNAPTIMVAERAADMIL 531
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG A DP AVVD Q VHG+E +R+ DAS+ P + N + IM AEK A ++
Sbjct: 482 MGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVTGNLNAPTIMIAEKLADVI 535
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG A DP AVVD Q VHG+E +R+ DAS+ P + N + IM AEK A ++
Sbjct: 482 MGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVTGNLNAPTIMMAEKLADVI 535
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD Q V GVE +RVAD+S+FP N IMT EK A +L K
Sbjct: 472 MGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNKV 60
MG DP AVVD V GVE +RVAD+S+FP+ N IMT EK A +L K ++
Sbjct: 472 MGSKDDPMAVVDPDTRVIGVEGLRVADSSIFPSLTYGNLNGPSIMTGEKAADHILGKPRL 531
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD Q V GV+ +RVAD+S+FP N IMT EK A +L K
Sbjct: 472 MGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD Q V GV+ +RVAD+S+FP N IMT EK A +L K
Sbjct: 472 MGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG +DP AVVD + V GVE +RVAD+S+FP N IMT EK A +L K
Sbjct: 472 MGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD Q V G++ +RVAD+S+FP N IMT EK A +L K
Sbjct: 472 MGAKDDPMAVVDPQTRVIGIDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + V GVE +RVAD+S+FP N N IM EK + +L +
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHILGR 528
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + V GVE +RVAD+S+FP N N IM EK + +L +
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHILGR 528
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + V GVE +RVAD+S+FP N N IM EK + +L +
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHILGR 528
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + V GVE +RVAD+S+FP N N IM EK + +L +
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHILGR 528
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + V GVE +RVAD+S+FP N N IM EK + +L +
Sbjct: 472 MGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHILGR 528
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + V GV+ +RVAD+S+FP N + IMT EK A +L K
Sbjct: 472 MGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAPSIMTGEKAADHILGK 528
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGP+ DP AVV+ +L VHGV +RV D S+ P N + +M AEK A ++
Sbjct: 551 MGPSHDPMAVVNHELRVHGVRGLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLL 604
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 34/57 (59%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + V GV+ +RVAD+S+FP N + IMT EK A +L K
Sbjct: 472 MGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKAADHILGK 528
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MGP+ DP AVV+ +L VHG+ +RV D S+ P + N + +M AEK A ++
Sbjct: 551 MGPSHDPMAVVNHELRVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLL 604
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + V GVE +RVAD+S+FP N N IM EK + +L +
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASGHILGR 528
>sp|Q7X2H8|CHOX_ARTGO Choline oxidase OS=Arthrobacter globiformis GN=codA PE=1 SV=1
Length = 546
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG D + +D +L V GV +RVADASV P + NP V+M E+CA ++
Sbjct: 473 MGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLI 526
>sp|Q9VGP2|NINAG_DROME Neither inactivation nor afterpotential protein G OS=Drosophila
melanogaster GN=ninaG PE=2 SV=2
Length = 581
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 9 AVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
+VVD QL + GV NVRV DASV P ++ NP SVV+ A + A +L
Sbjct: 525 SVVDSQLRLKGVSNVRVVDASVLPRPISGNPNSVVVAIALRAASWIL 571
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + V GV+ +RVAD+S+FP N + IMT EK A +L +
Sbjct: 472 MGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKSADHILGR 528
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
MG +DP V++ V G++++RV D+SVFPT N N + IM AEK A +L
Sbjct: 477 MGSDNDPMTVLNKDCQVRGIDSLRVIDSSVFPTIPNGNLNAPTIMVAEKAADAIL 531
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG A D +VVD + V GV+ +RVAD+S+FP N N + IMT EK + +L +
Sbjct: 473 MGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLNAPSIMTGEKASDHILGR 529
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 4 ASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
D AVVD Q VHGV+ +RV DAS+ P + N + IM AEK A + D+
Sbjct: 483 GEDDMAVVDGQGRVHGVQGLRVVDASIMPEIITGNLNATTIMMAEKIADRIRDR 536
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 30/54 (55%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMV 54
MG A D AVVD VHG+E +RV DAS+ P N + IM AEK A V
Sbjct: 482 MGSADDAMAVVDGAGRVHGLEGLRVIDASIMPVIATGNLNAPTIMIAEKMADKV 535
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,111,350
Number of Sequences: 539616
Number of extensions: 489426
Number of successful extensions: 1111
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 147
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)