Query psy15532
Match_columns 60
No_of_seqs 111 out of 1202
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:45:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05199 GMC_oxred_C: GMC oxid 99.9 1.3E-23 2.7E-28 126.0 4.5 49 1-50 96-144 (144)
2 PRK02106 choline dehydrogenase 99.9 1.5E-22 3.2E-27 143.9 6.3 57 1-59 480-536 (560)
3 TIGR01810 betA choline dehydro 99.9 2.3E-22 4.9E-27 142.1 6.2 58 1-58 473-530 (532)
4 KOG1238|consensus 99.9 4.4E-22 9.5E-27 145.0 5.7 58 1-58 559-616 (623)
5 TIGR02462 pyranose_ox pyranose 99.8 1E-19 2.2E-24 131.1 7.0 58 1-59 487-544 (544)
6 COG2303 BetA Choline dehydroge 99.8 4.5E-20 9.8E-25 132.0 4.8 56 1-57 481-536 (542)
7 PLN02785 Protein HOTHEAD 99.8 2E-19 4.3E-24 130.0 6.0 51 8-58 530-580 (587)
8 COG1252 Ndh NADH dehydrogenase 94.7 0.036 7.7E-07 39.7 3.0 47 9-58 280-331 (405)
9 PTZ00318 NADH dehydrogenase-li 93.7 0.24 5.1E-06 34.6 5.5 49 10-58 298-347 (424)
10 TIGR03169 Nterm_to_SelD pyridi 93.7 0.21 4.6E-06 33.6 5.2 48 10-57 261-309 (364)
11 KOG2495|consensus 91.1 0.43 9.2E-06 35.1 4.1 41 10-56 349-390 (491)
12 PF13807 GNVR: G-rich domain o 80.0 6.2 0.00014 21.7 4.3 36 18-53 36-71 (82)
13 TIGR01292 TRX_reduct thioredox 78.4 4.9 0.00011 25.7 4.0 43 10-57 256-299 (300)
14 PRK07121 hypothetical protein; 74.6 9.6 0.00021 27.1 5.0 49 10-58 433-491 (492)
15 TIGR02730 carot_isom carotene 71.6 9.1 0.0002 27.2 4.3 38 18-59 456-493 (493)
16 TIGR02734 crtI_fam phytoene de 71.2 13 0.00028 26.2 5.0 39 17-59 455-493 (502)
17 PRK04176 ribulose-1,5-biphosph 65.2 16 0.00034 24.2 4.2 50 8-59 203-255 (257)
18 TIGR02733 desat_CrtD C-3',4' d 65.0 15 0.00033 25.9 4.3 35 18-56 456-490 (492)
19 PRK09754 phenylpropionate diox 62.6 13 0.00028 25.6 3.5 45 9-55 257-307 (396)
20 TIGR00292 thiazole biosynthesi 62.3 18 0.00039 23.9 4.1 49 9-59 203-254 (254)
21 PF11393 IcmL: Macrophage kill 62.0 9.4 0.0002 22.3 2.4 33 27-59 1-33 (108)
22 PRK08274 tricarballylate dehyd 61.8 27 0.00058 24.5 5.0 47 10-56 403-459 (466)
23 PF02873 MurB_C: UDP-N-acetyle 60.7 22 0.00047 20.9 3.8 42 19-60 48-95 (105)
24 PRK12839 hypothetical protein; 60.5 33 0.00071 25.3 5.5 51 10-60 510-570 (572)
25 PRK07057 sdhA succinate dehydr 60.0 38 0.00083 25.0 5.7 48 9-56 363-424 (591)
26 TIGR01816 sdhA_forward succina 59.5 25 0.00053 25.8 4.7 48 9-56 333-394 (565)
27 PRK08958 sdhA succinate dehydr 59.5 30 0.00064 25.6 5.1 48 9-56 359-421 (588)
28 PRK12845 3-ketosteroid-delta-1 59.5 33 0.0007 25.3 5.3 47 10-56 507-563 (564)
29 PRK12844 3-ketosteroid-delta-1 59.2 32 0.00069 25.2 5.2 48 10-57 492-549 (557)
30 PRK08205 sdhA succinate dehydr 58.0 41 0.00089 24.8 5.6 48 9-56 358-416 (583)
31 PLN00128 Succinate dehydrogena 55.3 47 0.001 25.0 5.6 46 11-56 405-464 (635)
32 PRK12842 putative succinate de 55.0 46 0.001 24.3 5.4 50 7-58 513-567 (574)
33 cd01445 TST_Repeats Thiosulfat 54.4 4.7 0.0001 24.3 0.3 16 15-30 118-133 (138)
34 PRK12837 3-ketosteroid-delta-1 54.2 45 0.00098 24.1 5.2 46 9-56 460-510 (513)
35 PRK08626 fumarate reductase fl 53.2 36 0.00079 25.6 4.8 47 10-56 376-427 (657)
36 PLN02661 Putative thiazole syn 53.1 28 0.0006 24.8 3.9 49 9-59 277-328 (357)
37 TIGR03385 CoA_CoA_reduc CoA-di 52.7 20 0.00042 24.8 3.1 26 10-36 252-278 (427)
38 PRK05675 sdhA succinate dehydr 52.2 51 0.0011 24.3 5.3 49 8-56 340-403 (570)
39 PRK12843 putative FAD-binding 51.2 48 0.001 24.4 5.0 47 9-57 520-571 (578)
40 PRK09564 coenzyme A disulfide 48.0 20 0.00044 24.8 2.6 27 9-36 264-291 (444)
41 PRK09078 sdhA succinate dehydr 47.6 57 0.0012 24.2 5.0 47 10-56 366-426 (598)
42 PRK12835 3-ketosteroid-delta-1 46.2 77 0.0017 23.4 5.5 49 7-57 516-569 (584)
43 PRK06069 sdhA succinate dehydr 44.2 59 0.0013 23.8 4.6 46 10-55 356-411 (577)
44 PRK13984 putative oxidoreducta 42.5 65 0.0014 23.6 4.6 42 10-58 559-601 (604)
45 TIGR02485 CobZ_N-term precorri 41.3 1.1E+02 0.0024 21.3 5.4 48 10-57 372-429 (432)
46 PRK07843 3-ketosteroid-delta-1 40.5 81 0.0018 23.1 4.8 47 9-57 505-556 (557)
47 PRK06134 putative FAD-binding 40.5 97 0.0021 22.8 5.2 48 9-58 519-571 (581)
48 PRK04965 NADH:flavorubredoxin 38.9 63 0.0014 22.0 3.9 46 8-55 254-300 (377)
49 PRK06481 fumarate reductase fl 38.8 1.3E+02 0.0027 21.7 5.5 48 10-57 446-502 (506)
50 PRK06116 glutathione reductase 38.5 92 0.002 21.8 4.7 40 10-55 286-326 (450)
51 TIGR03143 AhpF_homolog putativ 37.7 67 0.0014 23.5 4.0 42 10-55 264-305 (555)
52 COG2897 SseA Rhodanese-related 37.0 14 0.00031 25.4 0.5 16 15-30 111-126 (285)
53 PRK12814 putative NADPH-depend 37.0 1E+02 0.0022 23.1 5.0 44 10-58 456-500 (652)
54 COG0029 NadB Aspartate oxidase 36.7 81 0.0018 23.8 4.3 47 10-57 345-396 (518)
55 PTZ00139 Succinate dehydrogena 34.9 1.3E+02 0.0029 22.4 5.2 47 10-56 383-443 (617)
56 TIGR01812 sdhA_frdA_Gneg succi 34.5 1.1E+02 0.0025 22.1 4.8 47 10-56 346-400 (566)
57 PF07992 Pyr_redox_2: Pyridine 34.3 41 0.00088 20.2 2.2 20 9-29 177-197 (201)
58 PRK05945 sdhA succinate dehydr 34.2 1.3E+02 0.0029 22.0 5.1 47 10-56 355-411 (575)
59 PLN02815 L-aspartate oxidase 34.0 1.4E+02 0.0031 22.3 5.3 46 10-56 381-431 (594)
60 PRK12770 putative glutamate sy 33.4 1.5E+02 0.0033 20.0 5.1 43 10-58 306-349 (352)
61 PRK12771 putative glutamate sy 32.3 1.3E+02 0.0029 21.9 4.8 45 10-58 399-443 (564)
62 PRK06452 sdhA succinate dehydr 32.1 1.3E+02 0.0029 22.1 4.8 47 10-56 350-401 (566)
63 PRK13748 putative mercuric red 30.7 1.2E+02 0.0026 21.8 4.4 40 10-55 386-426 (561)
64 PRK14727 putative mercuric red 29.7 1.3E+02 0.0029 21.3 4.4 40 10-55 304-344 (479)
65 PRK06292 dihydrolipoamide dehy 29.0 1.5E+02 0.0032 20.7 4.5 40 10-55 289-329 (460)
66 PF11245 DUF2544: Protein of u 28.9 35 0.00076 23.1 1.3 29 6-34 137-165 (230)
67 PRK14649 UDP-N-acetylenolpyruv 28.9 1.1E+02 0.0023 20.9 3.7 42 19-60 238-285 (295)
68 PRK08071 L-aspartate oxidase; 28.8 1.9E+02 0.0041 20.9 5.1 46 10-56 336-386 (510)
69 TIGR01316 gltA glutamate synth 28.8 1.9E+02 0.0041 20.4 5.1 42 10-57 406-448 (449)
70 TIGR02867 spore_II_P stage II 28.7 64 0.0014 21.0 2.5 20 38-57 27-46 (196)
71 PF13365 Trypsin_2: Trypsin-li 28.5 39 0.00084 18.4 1.3 14 7-20 107-120 (120)
72 PRK09853 putative selenate red 28.3 1.7E+02 0.0038 23.8 5.1 43 10-58 798-841 (1019)
73 TIGR01424 gluta_reduc_2 glutat 28.3 1.7E+02 0.0037 20.5 4.7 40 10-55 284-324 (446)
74 PRK13800 putative oxidoreducta 28.0 1.3E+02 0.0029 23.5 4.4 43 10-56 365-407 (897)
75 PRK12831 putative oxidoreducta 27.7 2.2E+02 0.0047 20.4 5.2 43 10-58 416-460 (464)
76 PRK07818 dihydrolipoamide dehy 27.7 1.7E+02 0.0037 20.6 4.7 40 10-55 294-334 (466)
77 PRK14694 putative mercuric red 27.7 1.7E+02 0.0036 20.7 4.6 40 10-55 293-333 (468)
78 PRK06175 L-aspartate oxidase; 27.3 1.6E+02 0.0034 20.8 4.4 46 10-56 335-385 (433)
79 PRK13512 coenzyme A disulfide 27.2 79 0.0017 22.2 2.9 19 10-29 260-279 (438)
80 PRK08401 L-aspartate oxidase; 27.2 1.6E+02 0.0035 20.9 4.5 46 10-56 314-364 (466)
81 TIGR01350 lipoamide_DH dihydro 27.0 1.5E+02 0.0033 20.6 4.3 41 10-56 290-331 (461)
82 cd01529 4RHOD_Repeats Member o 26.8 26 0.00055 19.1 0.3 16 15-30 76-91 (96)
83 PRK06370 mercuric reductase; V 26.1 2E+02 0.0043 20.2 4.7 40 10-55 292-332 (463)
84 PLN02546 glutathione reductase 26.0 1.9E+02 0.0042 21.4 4.8 40 10-55 371-411 (558)
85 PRK11749 dihydropyrimidine deh 25.6 2.4E+02 0.0053 19.8 5.1 45 10-58 407-451 (457)
86 PRK07573 sdhA succinate dehydr 24.4 2.2E+02 0.0048 21.4 4.9 42 10-53 410-456 (640)
87 PF04939 RRS1: Ribosome biogen 24.3 2E+02 0.0043 18.4 4.8 40 18-57 5-44 (164)
88 COG1233 Phytoene dehydrogenase 24.1 1E+02 0.0022 22.1 3.1 18 18-35 447-464 (487)
89 PRK05329 anaerobic glycerol-3- 24.1 2.2E+02 0.0049 20.4 4.7 35 20-58 380-420 (422)
90 TIGR01558 sm_term_P27 phage te 24.1 1.5E+02 0.0032 17.2 3.3 25 36-60 67-91 (116)
91 TIGR03140 AhpF alkyl hydropero 23.9 96 0.0021 22.4 2.9 22 10-32 468-490 (515)
92 PRK12834 putative FAD-binding 23.5 3E+02 0.0065 20.0 5.6 46 9-56 495-548 (549)
93 TIGR03315 Se_ygfK putative sel 23.3 2.4E+02 0.0052 23.0 5.1 43 10-57 795-838 (1012)
94 PRK06467 dihydrolipoamide dehy 23.1 2.1E+02 0.0046 20.3 4.5 40 10-55 295-335 (471)
95 COG1635 THI4 Ribulose 1,5-bisp 22.9 1.4E+02 0.003 20.7 3.3 48 10-59 210-260 (262)
96 TIGR01421 gluta_reduc_1 glutat 22.8 2.7E+02 0.0058 19.7 4.9 41 9-55 285-326 (450)
97 PF11064 DUF2865: Protein of u 22.7 42 0.00092 20.2 0.8 17 23-39 8-24 (116)
98 PF07454 SpoIIP: Stage II spor 22.4 1.2E+02 0.0026 20.6 3.0 22 38-60 104-125 (268)
99 PLN02723 3-mercaptopyruvate su 22.4 31 0.00066 23.5 0.1 16 15-30 124-139 (320)
100 PF00571 CBS: CBS domain CBS d 22.3 61 0.0013 15.5 1.2 11 10-20 35-45 (57)
101 PRK12778 putative bifunctional 22.2 2.6E+02 0.0056 21.3 4.9 44 10-58 706-749 (752)
102 PF01593 Amino_oxidase: Flavin 22.0 2.3E+02 0.0051 18.3 4.2 33 21-55 418-450 (450)
103 PRK13906 murB UDP-N-acetylenol 21.7 1.7E+02 0.0037 20.0 3.7 42 19-60 244-291 (307)
104 PRK07803 sdhA succinate dehydr 21.5 2.9E+02 0.0063 20.7 5.0 46 10-55 395-444 (626)
105 PRK05249 soluble pyridine nucl 21.3 2.7E+02 0.0058 19.4 4.6 41 9-55 292-333 (461)
106 cd01525 RHOD_Kc Member of the 21.1 35 0.00077 18.6 0.2 16 15-30 85-100 (105)
107 PRK08010 pyridine nucleotide-d 21.0 2.7E+02 0.0058 19.4 4.6 19 10-29 275-294 (441)
108 COG2088 SpoVG Uncharacterized 20.8 83 0.0018 18.5 1.7 8 21-28 32-39 (95)
109 PRK06416 dihydrolipoamide dehy 20.8 2.8E+02 0.0062 19.4 4.7 40 10-55 292-332 (462)
110 PRK13905 murB UDP-N-acetylenol 20.7 1.9E+02 0.0042 19.5 3.7 42 19-60 239-286 (298)
111 cd01448 TST_Repeat_1 Thiosulfa 20.5 40 0.00086 19.0 0.3 16 15-30 100-115 (122)
112 PF05119 Terminase_4: Phage te 20.4 1.7E+02 0.0036 16.0 3.6 27 34-60 56-82 (100)
113 PRK07845 flavoprotein disulfid 20.3 2.8E+02 0.0061 19.6 4.6 19 10-29 295-314 (466)
114 TIGR02053 MerA mercuric reduct 20.2 2.9E+02 0.0062 19.4 4.6 40 10-55 287-327 (463)
115 PLN02507 glutathione reductase 20.2 2.7E+02 0.0058 20.1 4.5 40 10-55 321-361 (499)
116 PRK09077 L-aspartate oxidase; 20.1 3.1E+02 0.0068 20.0 4.9 46 10-56 357-407 (536)
117 TIGR03452 mycothione_red mycot 20.1 2.7E+02 0.0058 19.7 4.5 40 10-55 286-326 (452)
No 1
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.89 E-value=1.3e-23 Score=126.00 Aligned_cols=49 Identities=53% Similarity=0.803 Sum_probs=44.0
Q ss_pred CCCCCCCCceecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHH
Q psy15532 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKC 50 (60)
Q Consensus 1 Mg~~~~~~~Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~ 50 (60)
||+ ++..+|||+++||||++||||+|+|+||+.+++||++|++|+|+|+
T Consensus 96 mG~-~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 96 MGP-DPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp BTS-STTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred ccc-cCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 788 7777999999999999999999999999999999999999999996
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=99.87 E-value=1.5e-22 Score=143.87 Aligned_cols=57 Identities=46% Similarity=0.575 Sum_probs=54.0
Q ss_pred CCCCCCCCceecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhhC
Q psy15532 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59 (60)
Q Consensus 1 Mg~~~~~~~Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~~ 59 (60)
||+ ++ +||||+++||||++||||+|+|+||+.+++||++|+||+|+|+|++|+++++
T Consensus 480 MG~-d~-~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~~ 536 (560)
T PRK02106 480 MGT-DP-MAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRTP 536 (560)
T ss_pred cCC-CC-CeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccCC
Confidence 887 66 8999999999999999999999999999999999999999999999998763
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.87 E-value=2.3e-22 Score=142.07 Aligned_cols=58 Identities=48% Similarity=0.660 Sum_probs=55.1
Q ss_pred CCCCCCCCceecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 1 Mg~~~~~~~Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
||+++++.+|||+++||||++||||+|+|+||+.+++||++|+||+|||+|++|+++.
T Consensus 473 MG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~ 530 (532)
T TIGR01810 473 MGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGKK 530 (532)
T ss_pred CCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhccC
Confidence 8876788999999999999999999999999999999999999999999999998764
No 4
>KOG1238|consensus
Probab=99.86 E-value=4.4e-22 Score=145.01 Aligned_cols=58 Identities=52% Similarity=0.772 Sum_probs=56.9
Q ss_pred CCCCCCCCceecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 1 Mg~~~~~~~Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
||++.|+++|||+++||||++||||+|+||||.+|+.||+++++|||||+|++|+++|
T Consensus 559 MGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~ 616 (623)
T KOG1238|consen 559 MGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEW 616 (623)
T ss_pred eCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 8988999999999999999999999999999999999999999999999999999987
No 5
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.80 E-value=1e-19 Score=131.08 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=56.0
Q ss_pred CCCCCCCCceecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhhC
Q psy15532 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59 (60)
Q Consensus 1 Mg~~~~~~~Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~~ 59 (60)
||. ++++||||+++|+||++||||+|+|+||+.+++||++|++|+|+|+|+.|.+++|
T Consensus 487 MG~-dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~~ 544 (544)
T TIGR02462 487 IGF-DEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNFG 544 (544)
T ss_pred cCC-CCCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 887 8999999999999999999999999999999999999999999999999998875
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.80 E-value=4.5e-20 Score=132.03 Aligned_cols=56 Identities=45% Similarity=0.628 Sum_probs=53.1
Q ss_pred CCCCCCCCceecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy15532 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 1 Mg~~~~~~~Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~ 57 (60)
||. ||..+|+|+++||||++||||+|+|+||+++++||++|++|+|+|+|++|+++
T Consensus 481 MG~-Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 481 MGS-DPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred CCC-CchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 886 88888888999999999999999999999999999999999999999999864
No 7
>PLN02785 Protein HOTHEAD
Probab=99.78 E-value=2e-19 Score=129.95 Aligned_cols=51 Identities=31% Similarity=0.434 Sum_probs=48.5
Q ss_pred CceecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 8 EAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 8 ~~Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
++|||+++||||++||||||+|+||..|++||++|++|+|||+|++|+++.
T Consensus 530 G~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 530 GKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred CCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 359999999999999999999999999999999999999999999998764
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.67 E-value=0.036 Score=39.66 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=34.9
Q ss_pred ceecCCCceeccCCeEEe-cCCCcCCCCCCChHHH----HHHHHHHHHHHHHhhh
Q psy15532 9 AVVDDQLLVHGVENVRVA-DASVFPTQLNCNPISV----VIMTAEKCAQMVLDKN 58 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t----~~ala~r~a~~i~~~~ 58 (60)
=+||+++|+.|.+++|++ |.+.++.. +|..+ ....|+.+|+.|.+++
T Consensus 280 l~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l 331 (405)
T COG1252 280 LVVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQGEYAAKNIKARL 331 (405)
T ss_pred EEeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999 99988886 33333 3455666666666554
No 9
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.74 E-value=0.24 Score=34.61 Aligned_cols=49 Identities=20% Similarity=0.078 Sum_probs=34.5
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
.||+++|+.+++|+|++ |.+-++..+........+.-|..+|+.|.+.+
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 68999999999999998 88877654322223345566777777776543
No 10
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.72 E-value=0.21 Score=33.61 Aligned_cols=48 Identities=19% Similarity=0.043 Sum_probs=33.9
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~ 57 (60)
.||+++|..+.+|+|++ |.+.++..+..........-|..+|+.|.+.
T Consensus 261 ~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~ 309 (364)
T TIGR03169 261 RVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRAS 309 (364)
T ss_pred EECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHH
Confidence 68888998899999999 7877765544333344555667777766554
No 11
>KOG2495|consensus
Probab=91.07 E-value=0.43 Score=35.14 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=28.1
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++||.|++|+|.+ |.+.+|..+ | ..-+|++=+..+.+
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~~---~---tAQVA~QqG~yLAk 390 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGLK---P---TAQVAEQQGAYLAK 390 (491)
T ss_pred eeeceeeccCcCceEEeccccccccCc---c---HHHHHHHHHHHHHH
Confidence 89999999999999998 777555443 2 33444444444433
No 12
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=80.03 E-value=6.2 Score=21.69 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=28.6
Q ss_pred eccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHH
Q psy15532 18 HGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQM 53 (60)
Q Consensus 18 ~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~ 53 (60)
....+++|+|....|..|.......++++|.-++-.
T Consensus 36 ~~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~Gl~ 71 (82)
T PF13807_consen 36 SNVSNVRIVDPAIVPDKPVSPKRALILALGLFLGLI 71 (82)
T ss_pred ccCCCceeccccccCCCCCCCcHHHHHHHHHHHHHH
Confidence 356799999999999999888888887777655433
No 13
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=78.40 E-value=4.9 Score=25.71 Aligned_cols=43 Identities=16% Similarity=-0.002 Sum_probs=29.7
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~ 57 (60)
.||++++. +++|+|++ |++-. ..+.....+.-|+.+|..|.+.
T Consensus 256 ~v~~~~~t-~~~~vya~GD~~~~----~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 256 VTDEGMRT-SVPGVFAAGDVRDK----GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred EECCCCcc-CCCCEEEeecccCc----chhhhhhhhhhHHHHHHHHHhh
Confidence 57888776 89999999 55542 1133556777788888877654
No 14
>PRK07121 hypothetical protein; Validated
Probab=74.55 E-value=9.6 Score=27.08 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=35.9
Q ss_pred eecCC-Cceec-----cCCeEEec---CCCcCC-CCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQ-LLVHG-----VENVRVAD---ASVFPT-QLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~-~~v~g-----~~nL~V~D---~Si~P~-~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
.+|.+ +||-. ++|||.+. ++++-. -+++|.....+..+..+++.+.++.
T Consensus 433 ~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~~ 491 (492)
T PRK07121 433 RVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAARA 491 (492)
T ss_pred eECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhhc
Confidence 56777 77775 89999996 445432 2367788888999999998887654
No 15
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=71.61 E-value=9.1 Score=27.16 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=26.0
Q ss_pred eccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhhC
Q psy15532 18 HGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59 (60)
Q Consensus 18 ~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~~ 59 (60)
-.++|||.+.+|++|-.. . ..++.-|..+|+.|.++++
T Consensus 456 t~i~gLyl~G~~~~pG~G-v---~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPGQG-L---NAVAFSGFACAHRVAADLG 493 (493)
T ss_pred CCCCCeEEecCcCCCCCC-H---HHHHHHHHHHHHHHHhhcC
Confidence 468999999999988421 1 2244556777777776643
No 16
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=71.16 E-value=13 Score=26.25 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=26.6
Q ss_pred eeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhhC
Q psy15532 17 VHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59 (60)
Q Consensus 17 v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~~ 59 (60)
...++|||.+.+|++|-.. ...++.=|..+|+.|.++.+
T Consensus 455 ~t~i~gLyl~G~~~~pG~G----v~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 455 DRKIDNLYLVGAGTHPGAG----VPGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred CCCCCCEEEeCCCCCCCCC----HHHHHHHHHHHHHHHHhhcc
Confidence 4578999999999987522 12244556677777776654
No 17
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=65.25 E-value=16 Score=24.17 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=36.7
Q ss_pred CceecCCCceeccCCeEEecCCCc--CCCCCCChHHHHHH-HHHHHHHHHHhhhC
Q psy15532 8 EAVVDDQLLVHGVENVRVADASVF--PTQLNCNPISVVIM-TAEKCAQMVLDKNK 59 (60)
Q Consensus 8 ~~Vvd~~~~v~g~~nL~V~D~Si~--P~~~~~np~~t~~a-la~r~a~~i~~~~~ 59 (60)
.-||+...+| ++||||+.-++- --.|...|..--|. -++|+|+.|.++++
T Consensus 203 ~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 203 KLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred HHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 3578888888 799999965443 34567778766554 57899999998875
No 18
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=65.03 E-value=15 Score=25.90 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=23.9
Q ss_pred eccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 18 HGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 18 ~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
..++|||.|.+|++|-. +. ..++.=|..+|+.|.+
T Consensus 456 t~i~gLyl~G~~~~pG~-Gv---~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 456 TPVKGLWLCGDSIHPGE-GT---AGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCCeEEecCccCCCC-cH---HHHHHHHHHHHHHHhh
Confidence 37899999999999852 11 2344456667777654
No 19
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=62.58 E-value=13 Score=25.59 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=30.8
Q ss_pred ceecCCCceeccCCeEEe-cCCCcCCCCCCCh----H-HHHHHHHHHHHHHHH
Q psy15532 9 AVVDDQLLVHGVENVRVA-DASVFPTQLNCNP----I-SVVIMTAEKCAQMVL 55 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np----~-~t~~ala~r~a~~i~ 55 (60)
=+||+++|. ..+|+|.+ |...+|.. ...+ + -....-|..+|+.|.
T Consensus 257 i~vd~~~~t-s~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~ 307 (396)
T PRK09754 257 IVIDEACRT-CDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAML 307 (396)
T ss_pred EEECCCCcc-CCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhc
Confidence 369999998 78999999 77777654 3222 2 345566667777664
No 20
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=62.33 E-value=18 Score=23.92 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=35.3
Q ss_pred ceecCCCceeccCCeEEecCCCc--CCCCCCChHHHHHH-HHHHHHHHHHhhhC
Q psy15532 9 AVVDDQLLVHGVENVRVADASVF--PTQLNCNPISVVIM-TAEKCAQMVLDKNK 59 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~D~Si~--P~~~~~np~~t~~a-la~r~a~~i~~~~~ 59 (60)
.||+...+| ++||||+.-++- =-.|...|+.--|. -+.|+|+.|.++++
T Consensus 203 ~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 203 AIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred HHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 467777777 799999965543 34457778766555 57899999988764
No 21
>PF11393 IcmL: Macrophage killing protein with similarity to conjugation protein; InterPro: IPR021055 IcmL contains two amphipathic beta-sheet regions, required for the pore-forming ability which may be related to the transfer of this protein into a host cell membrane []. The icmL gene shows significant similarity to plasmid genes involved in conjugation however IcmL is thought to be required for macrophage killing. It is unknown whether conjugation plays a role in macrophage killing [].
Probab=61.98 E-value=9.4 Score=22.31 Aligned_cols=33 Identities=6% Similarity=-0.004 Sum_probs=28.1
Q ss_pred cCCCcCCCCCCChHHHHHHHHHHHHHHHHhhhC
Q psy15532 27 DASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59 (60)
Q Consensus 27 D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~~ 59 (60)
||.|+|-.|...|..+-..+...+.+.|.+.+.
T Consensus 1 ~gri~~l~pl~~P~~s~~~v~~wa~~ai~~~fs 33 (108)
T PF11393_consen 1 NGRIIPLVPLDEPAVSDAEVLQWAQEAITAAFS 33 (108)
T ss_pred CCceeecCCCCCcccCHHHHHHHHHHHHHHHhC
Confidence 688999999999998888888888888877654
No 22
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=61.76 E-value=27 Score=24.49 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=30.7
Q ss_pred eecCCCceec-----cCCeEEec---CC-CcCC-CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHG-----VENVRVAD---AS-VFPT-QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g-----~~nL~V~D---~S-i~P~-~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++||.. ++|||.+. ++ ++-. -++.|.....+..+..+++.+.+
T Consensus 403 ~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~ 459 (466)
T PRK08274 403 KVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAAR 459 (466)
T ss_pred EECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHH
Confidence 5677777753 89999996 33 5532 23456666667777777777654
No 23
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=60.74 E-value=22 Score=20.93 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=29.8
Q ss_pred ccCCeEEecCCCcCCCC------CCChHHHHHHHHHHHHHHHHhhhCC
Q psy15532 19 GVENVRVADASVFPTQL------NCNPISVVIMTAEKCAQMVLDKNKV 60 (60)
Q Consensus 19 g~~nL~V~D~Si~P~~~------~~np~~t~~ala~r~a~~i~~~~~~ 60 (60)
|.+|.++-|+.+-+.-+ +.-+..-+..|.+++-+.+.+++|+
T Consensus 48 GlKG~~iG~a~vS~kHanfivN~g~Ata~dv~~Li~~v~~~V~~~~Gi 95 (105)
T PF02873_consen 48 GLKGFRIGGAQVSEKHANFIVNHGGATAADVLALIEEVRERVKEKFGI 95 (105)
T ss_dssp T-TT-EETTEEE-SSSTTEEEE-SS--HHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCCCeeCcCEechhhCCeEEECCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 77888888888777644 4456788999999999999999875
No 24
>PRK12839 hypothetical protein; Provisional
Probab=60.48 E-value=33 Score=25.33 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=35.5
Q ss_pred eecCCCceec-----cCCeEEec---CCCcCC-C-CCCChHHHHHHHHHHHHHHHHhhhCC
Q psy15532 10 VVDDQLLVHG-----VENVRVAD---ASVFPT-Q-LNCNPISVVIMTAEKCAQMVLDKNKV 60 (60)
Q Consensus 10 Vvd~~~~v~g-----~~nL~V~D---~Si~P~-~-~~~np~~t~~ala~r~a~~i~~~~~~ 60 (60)
.+|.++||.. ++|||.+. ++++-. - .+++.....+..+..+++.+.++.++
T Consensus 510 ~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~~ 570 (572)
T PRK12839 510 VADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTGV 570 (572)
T ss_pred cCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhcccc
Confidence 3455555544 89999996 345532 2 25677888999999999999877653
No 25
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.98 E-value=38 Score=25.01 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=33.4
Q ss_pred ce-ecCCCcee--------ccCCeEEecCCCcCC-----CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 9 AV-VDDQLLVH--------GVENVRVADASVFPT-----QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 9 ~V-vd~~~~v~--------g~~nL~V~D~Si~P~-----~~~~np~~t~~ala~r~a~~i~~ 56 (60)
|+ +|.++|+. -++|||.+.-...-. -.+.|..+.....|.++++.+.+
T Consensus 363 Gi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~ 424 (591)
T PRK07057 363 GIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVD 424 (591)
T ss_pred CeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 44 88899985 389999996543211 12446778888888888887653
No 26
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=59.53 E-value=25 Score=25.83 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=31.9
Q ss_pred ce-ecCCCce--------eccCCeEEecCCCcCCCC-----CCChHHHHHHHHHHHHHHHHh
Q psy15532 9 AV-VDDQLLV--------HGVENVRVADASVFPTQL-----NCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 9 ~V-vd~~~~v--------~g~~nL~V~D~Si~P~~~-----~~np~~t~~ala~r~a~~i~~ 56 (60)
|+ +|.++|| ..++|||.+.--..-..- +.|..+-....|.++++.+.+
T Consensus 333 Gi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~ 394 (565)
T TIGR01816 333 GIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAE 394 (565)
T ss_pred CceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 44 8888887 259999999543321112 346667777888888877653
No 27
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.49 E-value=30 Score=25.61 Aligned_cols=48 Identities=6% Similarity=0.011 Sum_probs=32.7
Q ss_pred ce-ecCCCcee---------ccCCeEEecCCCcCC-----CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 9 AV-VDDQLLVH---------GVENVRVADASVFPT-----QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 9 ~V-vd~~~~v~---------g~~nL~V~D~Si~P~-----~~~~np~~t~~ala~r~a~~i~~ 56 (60)
|+ +|.++||. -++|||.+.--..-. -.++|..+..+..|.++++.+.+
T Consensus 359 Gi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 421 (588)
T PRK08958 359 GIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQE 421 (588)
T ss_pred CeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 44 78888873 499999995432211 23457778888888888877653
No 28
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=59.46 E-value=33 Score=25.35 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=32.1
Q ss_pred eecCCCceec-----cCCeEEec---CCCcC-CCCC-CChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHG-----VENVRVAD---ASVFP-TQLN-CNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g-----~~nL~V~D---~Si~P-~~~~-~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++||.. ++|||.+. ++++- .-++ ++.....+..+..+++.+.+
T Consensus 507 ~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 507 RADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred eECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 4555555554 79999995 45553 3333 67788888889988888764
No 29
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=59.20 E-value=32 Score=25.19 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=31.5
Q ss_pred eecCCCceec-----cCCeEEec---CCCcCC-CCC-CChHHHHHHHHHHHHHHHHhh
Q psy15532 10 VVDDQLLVHG-----VENVRVAD---ASVFPT-QLN-CNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 10 Vvd~~~~v~g-----~~nL~V~D---~Si~P~-~~~-~np~~t~~ala~r~a~~i~~~ 57 (60)
.+|.++||.. ++|||.+. ++++-. -++ ++.....+..+..+++.+.+.
T Consensus 492 ~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 492 LTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred cCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 4455555554 89999996 344432 233 567788888888888887654
No 30
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=58.04 E-value=41 Score=24.75 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=31.9
Q ss_pred ce-ecCCCce-----eccCCeEEecCCCcCC-----CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 9 AV-VDDQLLV-----HGVENVRVADASVFPT-----QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 9 ~V-vd~~~~v-----~g~~nL~V~D~Si~P~-----~~~~np~~t~~ala~r~a~~i~~ 56 (60)
|+ +|.++++ ..++|||.+.--..-. -.+.|..+.....|.++++.+.+
T Consensus 358 Gi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 416 (583)
T PRK08205 358 GIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAE 416 (583)
T ss_pred CeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence 44 7888887 3699999995433211 12456777777778887776643
No 31
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=55.29 E-value=47 Score=24.97 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=32.7
Q ss_pred ecCCCcee---------ccCCeEEecCCCcCC-----CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 11 VDDQLLVH---------GVENVRVADASVFPT-----QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 11 vd~~~~v~---------g~~nL~V~D~Si~P~-----~~~~np~~t~~ala~r~a~~i~~ 56 (60)
+|.++|+. -++|||.+.-...-. -.+.|..+..+..|.++++.+.+
T Consensus 405 vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~ 464 (635)
T PLN00128 405 TNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE 464 (635)
T ss_pred cCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 78888873 499999995533211 12457888888889998887754
No 32
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=55.01 E-value=46 Score=24.35 Aligned_cols=50 Identities=8% Similarity=0.019 Sum_probs=33.1
Q ss_pred CCceecCCCceeccCCeEEec---CCCcCC-CC-CCChHHHHHHHHHHHHHHHHhhh
Q psy15532 7 PEAVVDDQLLVHGVENVRVAD---ASVFPT-QL-NCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 7 ~~~Vvd~~~~v~g~~nL~V~D---~Si~P~-~~-~~np~~t~~ala~r~a~~i~~~~ 58 (60)
..-|+|.++++ ++|||.+. ++++-. -+ .++.....+..+..+++.+.+..
T Consensus 513 ~~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 513 TGEVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred CceEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 33456666553 69999997 344422 12 36678888888888888887653
No 33
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=54.41 E-value=4.7 Score=24.26 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.8
Q ss_pred CceeccCCeEEecCCC
Q psy15532 15 LLVHGVENVRVADASV 30 (60)
Q Consensus 15 ~~v~g~~nL~V~D~Si 30 (60)
++..|++|+++.|||.
T Consensus 118 l~~~G~~~v~ildGG~ 133 (138)
T cd01445 118 ARLCGHPDVAILDGGF 133 (138)
T ss_pred HHHcCCCCeEEeCCCH
Confidence 5677999999999985
No 34
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=54.15 E-value=45 Score=24.06 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=31.4
Q ss_pred ceecCCCceeccCCeEEecC---CCc-CCCC-CCChHHHHHHHHHHHHHHHHh
Q psy15532 9 AVVDDQLLVHGVENVRVADA---SVF-PTQL-NCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~D~---Si~-P~~~-~~np~~t~~ala~r~a~~i~~ 56 (60)
-|+|.++++ ++|||.+.. +++ ..-+ ++|.....+..+..+++.+..
T Consensus 460 qVl~~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 460 RVLDTDGRP--IPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred eEECCCCCE--eCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 355555554 699999954 455 2223 467788888899988888754
No 35
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=53.24 E-value=36 Score=25.61 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=33.1
Q ss_pred eecCCCceeccCCeEEecCCCcCC-----CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVADASVFPT-----QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P~-----~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++++..++|||.+.-...-. -.++|..+-.+..|.++++.+.+
T Consensus 376 ~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~ 427 (657)
T PRK08626 376 RTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVAD 427 (657)
T ss_pred eECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 579999997899999996543322 23456777777777777776543
No 36
>PLN02661 Putative thiazole synthesis
Probab=53.07 E-value=28 Score=24.78 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=36.1
Q ss_pred ceecCCCceeccCCeEEecCCC--cCCCCCCChHHHHHHH-HHHHHHHHHhhhC
Q psy15532 9 AVVDDQLLVHGVENVRVADASV--FPTQLNCNPISVVIMT-AEKCAQMVLDKNK 59 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~D~Si--~P~~~~~np~~t~~al-a~r~a~~i~~~~~ 59 (60)
.||+...+| ++||||+.-++ .=-.|+..|+.--|.+ +.|+|+.|.++++
T Consensus 277 ~~v~~t~ev--~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 277 AIVRLTREV--VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred HHHhccCcc--cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 477777788 79999996544 4455677887666555 7889999988764
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=52.67 E-value=20 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=20.3
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCC
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLN 36 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~ 36 (60)
.||+++|. ..+|+|++ |..-+|....
T Consensus 252 ~vd~~~~t-~~~~Vya~GD~~~~~~~~~ 278 (427)
T TIGR03385 252 WVNEKFQT-SVPNIYAAGDVAESHNIIT 278 (427)
T ss_pred EECCCcEe-CCCCEEEeeeeEEeeeccC
Confidence 67888886 79999999 7777766543
No 38
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.17 E-value=51 Score=24.27 Aligned_cols=49 Identities=6% Similarity=-0.022 Sum_probs=33.6
Q ss_pred Cce-ecCCCcee---------ccCCeEEecCCCc---CC--CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 8 EAV-VDDQLLVH---------GVENVRVADASVF---PT--QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 8 ~~V-vd~~~~v~---------g~~nL~V~D~Si~---P~--~~~~np~~t~~ala~r~a~~i~~ 56 (60)
+|+ +|.++++. -++|||.+.--.. -- -.++|..+..+..|.++++.+.+
T Consensus 340 GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 403 (570)
T PRK05675 340 GGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEK 403 (570)
T ss_pred CCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHH
Confidence 344 78888873 4999999854322 11 23567888888888888877653
No 39
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=51.17 E-value=48 Score=24.35 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=28.3
Q ss_pred ceecCCCceeccCCeEEec---CCCcCCC--CCCChHHHHHHHHHHHHHHHHhh
Q psy15532 9 AVVDDQLLVHGVENVRVAD---ASVFPTQ--LNCNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~D---~Si~P~~--~~~np~~t~~ala~r~a~~i~~~ 57 (60)
-|+|.++++ ++|||.+. ++++-.. ..++.....+..+..+++.+.+.
T Consensus 520 qVld~dg~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 520 RVLNADGQP--ISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred eEECCCCCC--cCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 345554442 79999985 3444221 12455666777787777776554
No 40
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=48.02 E-value=20 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=20.9
Q ss_pred ceecCCCceeccCCeEEe-cCCCcCCCCC
Q psy15532 9 AVVDDQLLVHGVENVRVA-DASVFPTQLN 36 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~-D~Si~P~~~~ 36 (60)
=.||+++|. ..+|+|++ |..-+|....
T Consensus 264 i~vd~~~~t-~~~~IyA~GD~~~~~~~~~ 291 (444)
T PRK09564 264 IIVDEYGET-SIENIYAAGDCATIYNIVS 291 (444)
T ss_pred EEECCCccc-CCCCEEEeeeEEEEEeccC
Confidence 368999996 89999999 7776665443
No 41
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.63 E-value=57 Score=24.17 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=32.8
Q ss_pred eecCCCcee---------ccCCeEEecCCCcC-----CCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVH---------GVENVRVADASVFP-----TQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~---------g~~nL~V~D~Si~P-----~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++||. -++|||.+.--..- .-.+.|..+..+..|.++++.+.+
T Consensus 366 ~vd~~~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 426 (598)
T PRK09078 366 PTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAE 426 (598)
T ss_pred ccCCCceeecccccccCCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHH
Confidence 478888873 59999999543321 123457778888888888887754
No 42
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=46.23 E-value=77 Score=23.45 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=30.7
Q ss_pred CCceecCCCceeccCCeEEec---CCCcCCC-CC-CChHHHHHHHHHHHHHHHHhh
Q psy15532 7 PEAVVDDQLLVHGVENVRVAD---ASVFPTQ-LN-CNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 7 ~~~Vvd~~~~v~g~~nL~V~D---~Si~P~~-~~-~np~~t~~ala~r~a~~i~~~ 57 (60)
..-|+|.++++ ++|||.+. ++++-.. ++ ++.....+..+..+++.+.+.
T Consensus 516 ~~qVLd~~g~p--IpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~ 569 (584)
T PRK12835 516 HARVLREDDSV--IPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAV 569 (584)
T ss_pred CceEECCCCCC--ccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence 33456665553 69999996 4555322 22 455677777888887776654
No 43
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.15 E-value=59 Score=23.85 Aligned_cols=46 Identities=13% Similarity=0.043 Sum_probs=30.7
Q ss_pred eecCCCceec-----cCCeEEecCCCcC-----CCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHG-----VENVRVADASVFP-----TQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g-----~~nL~V~D~Si~P-----~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.+|.++|+-. ++|||.+.--..- .-+++|..+..+..|.++++.+.
T Consensus 356 ~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa 411 (577)
T PRK06069 356 HTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAA 411 (577)
T ss_pred eECCCCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 5688888864 8999999653321 12245667777777777777654
No 44
>PRK13984 putative oxidoreductase; Provisional
Probab=42.50 E-value=65 Score=23.60 Aligned_cols=42 Identities=10% Similarity=-0.103 Sum_probs=29.4
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
+||.++|. .++|+|++ |..-.|. ....++-|.++|..|.+.+
T Consensus 559 ~vd~~~~T-s~~gVfAaGD~~~~~~------~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 559 LTNEYGQT-SIPWLFAGGDIVHGPD------IIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred EeCCCCcc-CCCCEEEecCcCCchH------HHHHHHHHHHHHHHHHHHh
Confidence 67777776 79999988 6653331 3556777888888876654
No 45
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=41.27 E-value=1.1e+02 Score=21.29 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=31.1
Q ss_pred eecCCCceec-----cCCeEEecC----CCcCCC-CCCChHHHHHHHHHHHHHHHHhh
Q psy15532 10 VVDDQLLVHG-----VENVRVADA----SVFPTQ-LNCNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 10 Vvd~~~~v~g-----~~nL~V~D~----Si~P~~-~~~np~~t~~ala~r~a~~i~~~ 57 (60)
.+|.++||.. ++|||.+.. +++-.. .++|.....+..+..+++.+.+.
T Consensus 372 ~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 372 VVDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred EECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 4566666665 589999963 233221 23566677788888888877654
No 46
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=40.48 E-value=81 Score=23.09 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=29.4
Q ss_pred ceecCCCceeccCCeEEecC---CCcCC-CCC-CChHHHHHHHHHHHHHHHHhh
Q psy15532 9 AVVDDQLLVHGVENVRVADA---SVFPT-QLN-CNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~D~---Si~P~-~~~-~np~~t~~ala~r~a~~i~~~ 57 (60)
-|+|.++++ ++|||.+.. +++-. -++ ++.....+..+..+++.+.++
T Consensus 505 qVld~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 505 RVLRDDGSV--IEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred eEECCCCCC--cCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 355555543 899999943 34422 222 555667788888888887654
No 47
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=40.46 E-value=97 Score=22.83 Aligned_cols=48 Identities=10% Similarity=0.037 Sum_probs=31.1
Q ss_pred ceecCCCceeccCCeEEecC---CCcCC-C-CCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 9 AVVDDQLLVHGVENVRVADA---SVFPT-Q-LNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~D~---Si~P~-~-~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
-|+|.+++ =++|||.+.. +++=. - .+++.....+..+..+++.+.+..
T Consensus 519 qVld~~g~--pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 519 RVLDQAGQ--PIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred ceECCCCC--CcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 35555554 2799999973 44421 1 246677788888888888876543
No 48
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=38.89 E-value=63 Score=21.96 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=27.1
Q ss_pred CceecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 8 EAVVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 8 ~~Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
+=+||+++|. ..+|+|.+ |..-++..+. ......+.-|..+|+.|.
T Consensus 254 gi~vd~~l~t-s~~~VyA~GD~a~~~~~~~-~~~~~a~~~g~~~a~n~~ 300 (377)
T PRK04965 254 GIVVDSYLQT-SAPDIYALGDCAEINGQVL-PFLQPIQLSAMALAKNLL 300 (377)
T ss_pred CEEECCCccc-CCCCEEEeeecEeECCcee-ehHHHHHHHHHHHHHHhc
Confidence 3478999997 68999999 6665553211 112223444555555553
No 49
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=38.81 E-value=1.3e+02 Score=21.74 Aligned_cols=48 Identities=8% Similarity=0.160 Sum_probs=32.0
Q ss_pred eecCCCceec-----cCCeEEecC---CCcC-CCCCCChHHHHHHHHHHHHHHHHhh
Q psy15532 10 VVDDQLLVHG-----VENVRVADA---SVFP-TQLNCNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 10 Vvd~~~~v~g-----~~nL~V~D~---Si~P-~~~~~np~~t~~ala~r~a~~i~~~ 57 (60)
.+|.++||.. ++|||.+.- +++- ..+++|.....+..+..+++.+.+.
T Consensus 446 ~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~ 502 (506)
T PRK06481 446 KINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502 (506)
T ss_pred EECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 4566666643 899999943 4443 2345677788888888888776543
No 50
>PRK06116 glutathione reductase; Validated
Probab=38.55 E-value=92 Score=21.75 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=25.7
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. .++|+|++ |..-.| ........-|..+|+.|.
T Consensus 286 ~vd~~~~T-s~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 286 IVDEYQNT-NVPGIYAVGDVTGRV-----ELTPVAIAAGRRLSERLF 326 (450)
T ss_pred ecCCCCCc-CCCCEEEEeecCCCc-----CcHHHHHHHHHHHHHHHh
Confidence 67888886 89999999 654221 223344555666777664
No 51
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=37.71 E-value=67 Score=23.47 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=24.7
Q ss_pred eecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
+||.++|. .++|+|++.-..... .....+.+.-|..+|..|.
T Consensus 264 ~vd~~~~T-s~p~IyAaGDv~~~~---~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 264 PTNEDMET-NVPGVYAAGDLRPKE---LRQVVTAVADGAIAATSAE 305 (555)
T ss_pred EeCCcccc-CCCCEEEceeccCCC---cchheeHHhhHHHHHHHHH
Confidence 68888887 789999983332111 1123345555555555554
No 52
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=37.01 E-value=14 Score=25.39 Aligned_cols=16 Identities=44% Similarity=0.588 Sum_probs=13.9
Q ss_pred CceeccCCeEEecCCC
Q psy15532 15 LLVHGVENVRVADASV 30 (60)
Q Consensus 15 ~~v~g~~nL~V~D~Si 30 (60)
+|.+|+++++|.||..
T Consensus 111 l~~~Gh~~V~iLdGG~ 126 (285)
T COG2897 111 LRYLGHENVRILDGGL 126 (285)
T ss_pred HHHcCCCceEEecCCH
Confidence 5789999999999864
No 53
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=37.01 E-value=1e+02 Score=23.12 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=28.4
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
+||++....+.+|+|++ |..-.| ......++-|.++|..|.+.+
T Consensus 456 ~vd~~~~~Ts~pgVfA~GDv~~g~-----~~v~~Ai~~G~~AA~~I~~~L 500 (652)
T PRK12814 456 KVDPETLQTSVAGVFAGGDCVTGA-----DIAINAVEQGKRAAHAIDLFL 500 (652)
T ss_pred eeCCCCCcCCCCCEEEcCCcCCCc-----hHHHHHHHHHHHHHHHHHHHH
Confidence 56665555688999998 554222 234556667788888776544
No 54
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=36.65 E-value=81 Score=23.79 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=38.1
Q ss_pred eecCCCceeccCCeEEecCCCcCCCCCC-----ChHHHHHHHHHHHHHHHHhh
Q psy15532 10 VVDDQLLVHGVENVRVADASVFPTQLNC-----NPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P~~~~~-----np~~t~~ala~r~a~~i~~~ 57 (60)
.||.+||. .++|||.+.-...--.=++ |..+-....|.|+|+.|..+
T Consensus 345 ~vD~~GrT-si~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 345 AVDANGRT-SIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred EECCCCcc-cCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 68999998 8999999987666554444 66778899999999999764
No 55
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=34.92 E-value=1.3e+02 Score=22.44 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=33.0
Q ss_pred eecCCCcee---------ccCCeEEecCCCcCC-----CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVH---------GVENVRVADASVFPT-----QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~---------g~~nL~V~D~Si~P~-----~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++|+. .++|||.+.--..-. -++.|..+..+..|.++++.+.+
T Consensus 383 ~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~ 443 (617)
T PTZ00139 383 PTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVME 443 (617)
T ss_pred EEcCCceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 378888884 499999995432211 22457788888888888887754
No 56
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=34.54 E-value=1.1e+02 Score=22.14 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=31.5
Q ss_pred eecCCCce---eccCCeEEecCCCcC-----CCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLV---HGVENVRVADASVFP-----TQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v---~g~~nL~V~D~Si~P-----~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++|| -.++|||.+.--..- .-.++|..+..+..|.++++.+.+
T Consensus 346 ~id~~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~ 400 (566)
T TIGR01812 346 PTDYTGRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAE 400 (566)
T ss_pred EECcCcccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHH
Confidence 46888875 479999999542211 112457777788888888877653
No 57
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=34.28 E-value=41 Score=20.15 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=15.6
Q ss_pred ceecCCCceeccCCeEEe-cCC
Q psy15532 9 AVVDDQLLVHGVENVRVA-DAS 29 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~-D~S 29 (60)
-.||+.+|+- ++|+|++ |..
T Consensus 177 i~vd~~~~t~-~~~Iya~GD~a 197 (201)
T PF07992_consen 177 IKVDENLQTS-VPGIYAAGDCA 197 (201)
T ss_dssp BEEBTTSBBS-STTEEE-GGGB
T ss_pred cccccccccc-ccccccccccc
Confidence 3899999995 9999999 443
No 58
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=34.18 E-value=1.3e+02 Score=22.02 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=31.9
Q ss_pred eecCCCcee-----ccCCeEEecCCC----cC-CCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVH-----GVENVRVADASV----FP-TQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~-----g~~nL~V~D~Si----~P-~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++|+. -++|||.+.--. +- .-.+.|..+..+..|.++++.+.+
T Consensus 355 ~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 411 (575)
T PRK05945 355 PVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAE 411 (575)
T ss_pred eECCCceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 468888885 589999994422 21 123457777788888888877653
No 59
>PLN02815 L-aspartate oxidase
Probab=34.02 E-value=1.4e+02 Score=22.28 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=33.3
Q ss_pred eecCCCceeccCCeEEecCCCcC--C---CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVADASVFP--T---QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P--~---~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++|. .++|||.+.--..- . -.+.|..+.....|.++++.+.+
T Consensus 381 ~vD~~~~t-~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 381 RTGLQGET-NVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred eECCCCce-ecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 38999996 79999999553321 1 23567788888888888887653
No 60
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=33.43 E-value=1.5e+02 Score=19.96 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=25.7
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
.||++++. ..+|+|++ |..--|. .....+.-|..+|+.|.+.+
T Consensus 306 ~vd~~~~t-~~~~vyaiGD~~~~~~-----~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 306 VVDEKHMT-SREGVFAAGDVVTGPS-----KIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred eeCCCccc-CCCCEEEEcccccCcc-----hHHHHHHHHHHHHHHHHHHH
Confidence 46777775 67999998 5543232 23344555666666665543
No 61
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=32.34 E-value=1.3e+02 Score=21.88 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=28.0
Q ss_pred eecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
.+|++.+..+++|+|++.-.+. +.+.....++-|.++|..|.+.+
T Consensus 399 ~vd~~~~~ts~~~Vfa~GD~~~----g~~~v~~Av~~G~~aA~~i~~~L 443 (564)
T PRK12771 399 QVDPNFMMTGRPGVFAGGDMVP----GPRTVTTAIGHGKKAARNIDAFL 443 (564)
T ss_pred EeCCCCccCCCCCEEeccCcCC----CchHHHHHHHHHHHHHHHHHHHH
Confidence 4565455567899999843332 12234556677888888776543
No 62
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.10 E-value=1.3e+02 Score=22.09 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=32.9
Q ss_pred eecCCCceeccCCeEEecCCCc-----CCCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVADASVF-----PTQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~-----P~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.+++.-.++|||.+.-... ..-++.|..+-....|.++++.+.+
T Consensus 350 ~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 401 (566)
T PRK06452 350 DVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQ 401 (566)
T ss_pred EECCCCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 5788888656999999964332 1233567778888888888777643
No 63
>PRK13748 putative mercuric reductase; Provisional
Probab=30.73 E-value=1.2e+02 Score=21.77 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=24.6
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
+||.++|. .++|+|.+ |..-.|.. ....+.-|..+|+.|.
T Consensus 386 ~vd~~~~T-s~~~IyA~GD~~~~~~~-----~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 386 VIDQGMRT-SVPHIYAAGDCTDQPQF-----VYVAAAAGTRAAINMT 426 (561)
T ss_pred eECCCccc-CCCCEEEeeecCCCccc-----hhHHHHHHHHHHHHHc
Confidence 68888887 89999998 66544321 1122333555665553
No 64
>PRK14727 putative mercuric reductase; Provisional
Probab=29.72 E-value=1.3e+02 Score=21.34 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=25.3
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. .++|+|.+ |..-.|. .....+.-|..+|+.|.
T Consensus 304 ~Vd~~~~T-s~~~IyA~GD~~~~~~-----~~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 304 VVNPAMET-SAPDIYAAGDCSDLPQ-----FVYVAAAAGSRAGINMT 344 (479)
T ss_pred EECCCeec-CCCCEEEeeecCCcch-----hhhHHHHHHHHHHHHHc
Confidence 68888887 88999998 6653332 11223344566666664
No 65
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=29.01 E-value=1.5e+02 Score=20.72 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=25.7
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. ..+|+|.+ |..-.|. -....+.-|..+|+.|.
T Consensus 289 ~vd~~~~t-s~~~IyA~GD~~~~~~-----~~~~A~~qg~~aa~~i~ 329 (460)
T PRK06292 289 VVDEHTQT-SVPGIYAAGDVNGKPP-----LLHEAADEGRIAAENAA 329 (460)
T ss_pred eECCCccc-CCCCEEEEEecCCCcc-----chhHHHHHHHHHHHHhc
Confidence 48999998 89999988 6654321 12234455566666654
No 66
>PF11245 DUF2544: Protein of unknown function (DUF2544); InterPro: IPR021407 This is a bacterial family of proteins with unknown function.
Probab=28.87 E-value=35 Score=23.11 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.2
Q ss_pred CCCceecCCCceeccCCeEEecCCCcCCC
Q psy15532 6 DPEAVVDDQLLVHGVENVRVADASVFPTQ 34 (60)
Q Consensus 6 ~~~~Vvd~~~~v~g~~nL~V~D~Si~P~~ 34 (60)
..+|++...+..|=.|+=++||||.|=.-
T Consensus 137 STGgvIekTL~TyLMe~GkLCDgS~~D~R 165 (230)
T PF11245_consen 137 STGGVIEKTLSTYLMEDGKLCDGSKFDER 165 (230)
T ss_pred CCCcEEeeeeeeeeecCCcccCCCccccC
Confidence 45789999999999999999999998543
No 67
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=28.85 E-value=1.1e+02 Score=20.90 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=33.2
Q ss_pred ccCCeEEecCCCcCCCC------CCChHHHHHHHHHHHHHHHHhhhCC
Q psy15532 19 GVENVRVADASVFPTQL------NCNPISVVIMTAEKCAQMVLDKNKV 60 (60)
Q Consensus 19 g~~nL~V~D~Si~P~~~------~~np~~t~~ala~r~a~~i~~~~~~ 60 (60)
|.+|.++-|+.+-|.-. +.-+..-+.+|.+++-+.+.+++|+
T Consensus 238 GlKG~~~G~a~vS~kHanfivN~g~Ata~di~~Li~~v~~~V~~~~Gi 285 (295)
T PRK14649 238 GLKGTRIGDAEIATRHANYIINLGGARAADILRLIDLARTRVLAQFGI 285 (295)
T ss_pred CCCCCcccCEEEccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 57888887877777654 3456778999999999999999875
No 68
>PRK08071 L-aspartate oxidase; Provisional
Probab=28.84 E-value=1.9e+02 Score=20.92 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=31.7
Q ss_pred eecCCCceeccCCeEEecCCCc--C---CCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVADASVF--P---TQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~--P---~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.+++. .++|||.+.-... + .-.+.|..+.....|.++++.+.+
T Consensus 336 ~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 336 KTNLDGET-SIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred EECCCCcc-cCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 56888884 7999999954322 1 123456677778888888888753
No 69
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=28.83 E-value=1.9e+02 Score=20.44 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=26.5
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~ 57 (60)
+||++++. .++|+|++ |..- +.......++-|.++|..|.+.
T Consensus 406 ~vd~~~~T-s~~~VfA~GD~~~-----g~~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 406 VVDEDQRT-SIPGVFAGGDIIL-----GAATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred EeCCCCcc-CCCCEEEecCCCC-----CcHHHHHHHHHHHHHHHHHHhh
Confidence 56766665 68999998 5432 1123345566777888777553
No 70
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=28.71 E-value=64 Score=20.98 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHHHHHHhh
Q psy15532 38 NPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 38 np~~t~~ala~r~a~~i~~~ 57 (60)
++..+++.+|+++++.+.++
T Consensus 27 ~~~~~V~~VG~~L~~~Le~~ 46 (196)
T TIGR02867 27 HSEGNITKVGDRLAKELEEK 46 (196)
T ss_pred CCCCcHHHHHHHHHHHHHHC
Confidence 56789999999999999776
No 71
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=28.47 E-value=39 Score=18.38 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=11.2
Q ss_pred CCceecCCCceecc
Q psy15532 7 PEAVVDDQLLVHGV 20 (60)
Q Consensus 7 ~~~Vvd~~~~v~g~ 20 (60)
.+.|+|.++||.|+
T Consensus 107 Ggpv~~~~G~vvGi 120 (120)
T PF13365_consen 107 GGPVFDSDGRVVGI 120 (120)
T ss_dssp TSEEEETTSEEEEE
T ss_pred eHhEECCCCEEEeC
Confidence 34599999999885
No 72
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=28.28 E-value=1.7e+02 Score=23.79 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=29.8
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
+||..++. ..+|+|++ |..--| ......++-|.++|+.|....
T Consensus 798 ~VDetlqT-s~pgVFAaGD~a~Gp-----~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 798 VVDANGET-SLTNVYMIGDVQRGP-----STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred EeCCCccc-CCCCEEEEeccccCc-----hHHHHHHHHHHHHHHHHhhhc
Confidence 45666775 78999998 554223 345667788888998887644
No 73
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=28.27 E-value=1.7e+02 Score=20.54 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=24.2
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. .++|+|.+ |..-.+ .-......-|..+++.|.
T Consensus 284 ~vd~~~~T-s~~~IyA~GD~~~~~-----~l~~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 284 AVDEYSRT-SIPSIYAVGDVTDRI-----NLTPVAIMEATCFANTEF 324 (446)
T ss_pred EeCCCCcc-CCCCEEEeeccCCCc-----cchhHHHHHHHHHHHHHh
Confidence 58899987 89999998 654211 111233444555666654
No 74
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.02 E-value=1.3e+02 Score=23.48 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=31.2
Q ss_pred eecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.||.+++. .++|||.+.-... ...|-.+.....|.++++.+.+
T Consensus 365 ~vd~~~~T-~v~GLfAaGE~a~---~~~nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 365 WVDEHART-TVPGLYAAGDLAC---VPHNYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred EecCCCcc-cCCCeEechhccC---cchhhhhhHHHhHHHHHHHHHH
Confidence 57999987 7999999954322 1247777788888888877643
No 75
>PRK12831 putative oxidoreductase; Provisional
Probab=27.74 E-value=2.2e+02 Score=20.37 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=27.1
Q ss_pred eecCC-CceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQ-LLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~-~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
+||++ ++. .++|+|++ |..- +.......++-|.++|..|.+.+
T Consensus 416 ~vd~~~~~T-s~pgVfAaGD~~~-----g~~~v~~Ai~~G~~AA~~I~~~L 460 (464)
T PRK12831 416 VADEETGLT-SKEGVFAGGDAVT-----GAATVILAMGAGKKAAKAIDEYL 460 (464)
T ss_pred EECCCCCcc-CCCCEEEeCCCCC-----CchHHHHHHHHHHHHHHHHHHHh
Confidence 56666 443 78999998 5532 11234566777788888876544
No 76
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=27.68 E-value=1.7e+02 Score=20.58 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=25.2
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. ..+|+|++ |..-.| .-....+.-|..+|+.|.
T Consensus 294 ~vd~~~~T-s~p~IyAiGD~~~~~-----~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 294 AIDDYMRT-NVPHIYAIGDVTAKL-----QLAHVAEAQGVVAAETIA 334 (466)
T ss_pred eeCCCccc-CCCCEEEEeecCCCc-----ccHhHHHHHHHHHHHHHc
Confidence 68888887 89999998 554211 112234455666666664
No 77
>PRK14694 putative mercuric reductase; Provisional
Probab=27.68 E-value=1.7e+02 Score=20.71 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=24.7
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. .++|+|++ |..-.|.. ......-|..+|..|.
T Consensus 293 ~vd~~~~T-s~~~IyA~GD~~~~~~~-----~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 293 RIDEHLQT-TVSGIYAAGDCTDQPQF-----VYVAAAGGSRAAINMT 333 (468)
T ss_pred eeCCCccc-CCCCEEEEeecCCCccc-----HHHHHHHHHHHHHHhc
Confidence 58888887 89999999 66544321 1122334555666553
No 78
>PRK06175 L-aspartate oxidase; Provisional
Probab=27.28 E-value=1.6e+02 Score=20.84 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=34.0
Q ss_pred eecCCCceeccCCeEEecCCCc--CC---CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVADASVF--PT---QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~--P~---~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++| .-++|||.+.--.. .. -.+.|..+.....+.++++.+.+
T Consensus 335 ~vd~~~~-t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 335 KVDLNSK-TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred EECCCcc-ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 5788888 57999999965432 11 23567788888899999988754
No 79
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=27.24 E-value=79 Score=22.18 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.9
Q ss_pred eecCCCceeccCCeEEe-cCC
Q psy15532 10 VVDDQLLVHGVENVRVA-DAS 29 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~S 29 (60)
.||+++|. .++|+|++ |..
T Consensus 260 ~Vd~~~~t-~~~~IyA~GD~~ 279 (438)
T PRK13512 260 PVNDKFET-NVPNIYAIGDII 279 (438)
T ss_pred EECCCccc-CCCCEEEeeeeE
Confidence 68999996 79999999 554
No 80
>PRK08401 L-aspartate oxidase; Provisional
Probab=27.16 E-value=1.6e+02 Score=20.92 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=31.9
Q ss_pred eecCCCceeccCCeEEecCCC----cCCC-CCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVADASV----FPTQ-LNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si----~P~~-~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++| .-++|||.+.-.. +=.. .+.|..+..+..+.++++.+.+
T Consensus 314 ~vd~~~~-t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 314 SVDTFYR-TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred EECCCCc-ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 5788888 4899999995433 2211 2456667777888888887754
No 81
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=26.99 E-value=1.5e+02 Score=20.60 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=25.6
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.||.++|. .++|+|++ |+.-.| .-......-|..+|+.|..
T Consensus 290 ~vd~~l~t-~~~~IyaiGD~~~~~-----~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 290 VVDEYMRT-NVPGIYAIGDVIGGP-----MLAHVASHEGIVAAENIAG 331 (461)
T ss_pred eeCCCccc-CCCCEEEeeecCCCc-----ccHHHHHHHHHHHHHHHcC
Confidence 67888886 68999999 544321 1233445556667776653
No 82
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=26.81 E-value=26 Score=19.07 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.0
Q ss_pred CceeccCCeEEecCCC
Q psy15532 15 LLVHGVENVRVADASV 30 (60)
Q Consensus 15 ~~v~g~~nL~V~D~Si 30 (60)
++..|++++++.++++
T Consensus 76 l~~~G~~~v~~l~GG~ 91 (96)
T cd01529 76 LLALGGKPVALLDGGT 91 (96)
T ss_pred HHHcCCCCEEEeCCCH
Confidence 4567899999999876
No 83
>PRK06370 mercuric reductase; Validated
Probab=26.13 E-value=2e+02 Score=20.21 Aligned_cols=40 Identities=25% Similarity=0.109 Sum_probs=25.8
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. .++|+|.+ |..-.| +-......-|..+|+.|.
T Consensus 292 ~vd~~l~t-~~~~IyAiGD~~~~~-----~~~~~A~~~g~~aa~ni~ 332 (463)
T PRK06370 292 KVDDQLRT-TNPGIYAAGDCNGRG-----AFTHTAYNDARIVAANLL 332 (463)
T ss_pred eECcCCcC-CCCCEEEeeecCCCc-----ccHHHHHHHHHHHHHHHh
Confidence 57888887 89999988 554221 222344555667777765
No 84
>PLN02546 glutathione reductase
Probab=25.99 E-value=1.9e+02 Score=21.42 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=24.4
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. .++|+|.+ |..-.+ +.....+.-|..+|+.|.
T Consensus 371 ~VD~~l~T-s~p~IYAaGDv~~~~-----~l~~~A~~~g~~~a~~i~ 411 (558)
T PLN02546 371 EVDEYSRT-SVPSIWAVGDVTDRI-----NLTPVALMEGGALAKTLF 411 (558)
T ss_pred eECCCcee-CCCCEEEeeccCCCc-----ccHHHHHHHHHHHHHHHc
Confidence 58999997 89999988 665322 112233334455565554
No 85
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=25.62 E-value=2.4e+02 Score=19.82 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=25.8
Q ss_pred eecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
+||.....-.++|+|++.-.+- +.......+.-|..+|+.|.+.+
T Consensus 407 ~vd~~~~~Ts~~~VfA~GD~~~----~~~~~~~A~~~G~~aA~~I~~~l 451 (457)
T PRK11749 407 IADDETGRTSLPGVFAGGDIVT----GAATVVWAVGDGKDAAEAIHEYL 451 (457)
T ss_pred EeCCCCCccCCCCEEEeCCcCC----CchHHHHHHHHHHHHHHHHHHHH
Confidence 4555223336799999843331 11233456667778887776554
No 86
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.44 E-value=2.2e+02 Score=21.40 Aligned_cols=42 Identities=10% Similarity=0.009 Sum_probs=28.8
Q ss_pred eecCCCceeccCCeEEecCCCcCCCC-----CCChHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVADASVFPTQL-----NCNPISVVIMTAEKCAQM 53 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P~~~-----~~np~~t~~ala~r~a~~ 53 (60)
.+|.+++. .++|||.+.-. .-..= +.|-.+.....|.++++.
T Consensus 410 ~vd~~~~T-~i~GLyAaGE~-~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 410 WVDYNLMS-TIPGLFVIGEA-NFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred EECCCCcc-ccCCEEECccc-cccCCCcccccchhHHHHHHHHHHHhHH
Confidence 46999986 69999999663 21222 336677888888777643
No 87
>PF04939 RRS1: Ribosome biogenesis regulatory protein (RRS1); InterPro: IPR007023 This is a family of eukaryotic ribosomal biogenesis regulatory proteins.; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=24.27 E-value=2e+02 Score=18.36 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=34.3
Q ss_pred eccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy15532 18 HGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 18 ~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~ 57 (60)
+++-||-+.|.+-++.....+..-.+..+|.-.+..|..+
T Consensus 5 ~Dlg~Lla~D~~p~d~~~~~~~e~~L~~~ardn~Q~Lin~ 44 (164)
T PF04939_consen 5 FDLGNLLAFDPNPLDPSSSSDREEYLKSLARDNTQLLINQ 44 (164)
T ss_pred eeccceeeecCCcccccccCCcHHHHHHHHHHHHHHHHHH
Confidence 5678999999999988778888999999999999887654
No 88
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.15 E-value=1e+02 Score=22.14 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=15.3
Q ss_pred eccCCeEEecCCCcCCCC
Q psy15532 18 HGVENVRVADASVFPTQL 35 (60)
Q Consensus 18 ~g~~nL~V~D~Si~P~~~ 35 (60)
-.++|||.|.+|..|-..
T Consensus 447 t~i~~LYl~Ga~t~PG~G 464 (487)
T COG1233 447 TPIKGLYLVGASTHPGGG 464 (487)
T ss_pred CCcCceEEeCCcCCCCCC
Confidence 478999999999988744
No 89
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=24.09 E-value=2.2e+02 Score=20.39 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=23.9
Q ss_pred cCCeEEecCCCcCCCCCCChH------HHHHHHHHHHHHHHHhhh
Q psy15532 20 VENVRVADASVFPTQLNCNPI------SVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 20 ~~nL~V~D~Si~P~~~~~np~------~t~~ala~r~a~~i~~~~ 58 (60)
++|||++.+-+ .+.+|. .-.++-|.++++.|.++.
T Consensus 380 ~~nl~a~G~vl----~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 380 IENLYAAGAVL----GGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred ccceEEeeehh----cCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 69999997643 344553 466777788888876653
No 90
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=24.06 E-value=1.5e+02 Score=17.15 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhCC
Q psy15532 36 NCNPISVVIMTAEKCAQMVLDKNKV 60 (60)
Q Consensus 36 ~~np~~t~~ala~r~a~~i~~~~~~ 60 (60)
..||.+.+..=+.+-...+..++|+
T Consensus 67 k~nPa~~i~~~a~~~~~~l~~elGL 91 (116)
T TIGR01558 67 KANPALTVVEDAFKQLRSIGSALGL 91 (116)
T ss_pred ecChHHHHHHHHHHHHHHHHHHcCC
Confidence 3599999999999888888888875
No 91
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=23.91 E-value=96 Score=22.35 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=17.5
Q ss_pred eecCCCceeccCCeEEe-cCCCcC
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFP 32 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P 32 (60)
+||+++|. .++|+|++ |..-.|
T Consensus 468 ~vd~~~~T-s~p~IyAaGDv~~~~ 490 (515)
T TIGR03140 468 VIDERGRT-SVPGIFAAGDVTTVP 490 (515)
T ss_pred EECCCCCC-CCCCEEEcccccCCc
Confidence 68888987 89999998 665444
No 92
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=23.46 E-value=3e+02 Score=20.05 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=27.2
Q ss_pred ceecCCCceeccCCeEEecCC--Cc------CCCCCCChHHHHHHHHHHHHHHHHh
Q psy15532 9 AVVDDQLLVHGVENVRVADAS--VF------PTQLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~D~S--i~------P~~~~~np~~t~~ala~r~a~~i~~ 56 (60)
-|+|.++++ ++|||.+..- +| +....++.....+..+..+++.+.+
T Consensus 495 qVld~dg~p--IpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 495 RVLGADGTP--LPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred ceeCCCCCE--eCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 355555543 6999999322 11 1112355667778888888877653
No 93
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=23.27 E-value=2.4e+02 Score=22.95 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=28.8
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~~~ 57 (60)
+||++....+.+|+|++ |..--| ......++-|.++|..|..+
T Consensus 795 ~VD~~~~~Ts~pgVFAaGD~a~GP-----~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 795 VVNQATGETNITNVFVIGDANRGP-----ATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred EeCCCCCccCCCCEEEEeCcCCCc-----cHHHHHHHHHHHHHHHHhcc
Confidence 46665334578999999 543222 24566778888999888744
No 94
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.11 E-value=2.1e+02 Score=20.30 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=24.3
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. .++|+|.+ |..-.|. -......-|..+|+.|.
T Consensus 295 ~Vd~~~~t-~~p~VyAiGDv~~~~~-----la~~A~~eG~~aa~~i~ 335 (471)
T PRK06467 295 RVDKQCRT-NVPHIFAIGDIVGQPM-----LAHKGVHEGHVAAEVIA 335 (471)
T ss_pred eeCCCccc-CCCCEEEehhhcCCcc-----cHHHHHHHHHHHHHHHc
Confidence 68888887 89999999 5432221 12233444556666654
No 95
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=22.91 E-value=1.4e+02 Score=20.67 Aligned_cols=48 Identities=25% Similarity=0.236 Sum_probs=34.3
Q ss_pred eecCCCceeccCCeEEecCC--CcCCCCCCChHHHHHHH-HHHHHHHHHhhhC
Q psy15532 10 VVDDQLLVHGVENVRVADAS--VFPTQLNCNPISVVIMT-AEKCAQMVLDKNK 59 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~S--i~P~~~~~np~~t~~al-a~r~a~~i~~~~~ 59 (60)
+|+..++| ++||||+.-+ -+--.|+..|..--|.+ +.++|+.|.++++
T Consensus 210 vV~~T~eV--~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 210 VVENTGEV--YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred HHhccccc--cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 55666665 5899999654 44556788888766655 6788888888775
No 96
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=22.79 E-value=2.7e+02 Score=19.68 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=24.6
Q ss_pred ceecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 9 AVVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
=.||+++|. .++|+|++ |..-.|. -......-|..+|+.|.
T Consensus 285 i~vd~~~~T-~~p~IyAiGD~~~~~~-----~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 285 IIVDEYQNT-NVPGIYALGDVVGKVE-----LTPVAIAAGRKLSERLF 326 (450)
T ss_pred EEeCCCCcC-CCCCEEEEEecCCCcc-----cHHHHHHHHHHHHHHHh
Confidence 367888776 78999999 6442221 12223455566666664
No 97
>PF11064 DUF2865: Protein of unknown function (DUF2865); InterPro: IPR021293 This bacterial family of proteins has no known function.
Probab=22.74 E-value=42 Score=20.19 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=13.6
Q ss_pred eEEecCCCcCCCCCCCh
Q psy15532 23 VRVADASVFPTQLNCNP 39 (60)
Q Consensus 23 L~V~D~Si~P~~~~~np 39 (60)
||-+||..||-+....+
T Consensus 8 VRtCDG~~FPis~~~~~ 24 (116)
T PF11064_consen 8 VRTCDGYYFPISFSTSP 24 (116)
T ss_pred EeccCceeeccccCcCc
Confidence 67899999998876554
No 98
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=22.37 E-value=1.2e+02 Score=20.65 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCC
Q psy15532 38 NPISVVIMTAEKCAQMVLDKNKV 60 (60)
Q Consensus 38 np~~t~~ala~r~a~~i~~~~~~ 60 (60)
+...+++.+|+++++.| +++|+
T Consensus 104 ~~~~nV~~VG~~L~~~L-e~~Gi 125 (268)
T PF07454_consen 104 DEEVNVVKVGDRLAQEL-EKYGI 125 (268)
T ss_pred cccchHHHHHHHHHHHH-HHCCC
Confidence 45678999999999999 77664
No 99
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=22.37 E-value=31 Score=23.55 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=13.5
Q ss_pred CceeccCCeEEecCCC
Q psy15532 15 LLVHGVENVRVADASV 30 (60)
Q Consensus 15 ~~v~g~~nL~V~D~Si 30 (60)
++..|++++++.||++
T Consensus 124 L~~~G~~~V~~LdGG~ 139 (320)
T PLN02723 124 FRVFGHEKVWVLDGGL 139 (320)
T ss_pred HHHcCCCceEEcCCCH
Confidence 5668999999999875
No 100
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=22.31 E-value=61 Score=15.50 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=8.6
Q ss_pred eecCCCceecc
Q psy15532 10 VVDDQLLVHGV 20 (60)
Q Consensus 10 Vvd~~~~v~g~ 20 (60)
|+|.++++.|+
T Consensus 35 V~d~~~~~~G~ 45 (57)
T PF00571_consen 35 VVDEDGKLVGI 45 (57)
T ss_dssp EESTTSBEEEE
T ss_pred EEecCCEEEEE
Confidence 78888888774
No 101
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=22.18 E-value=2.6e+02 Score=21.31 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=27.1
Q ss_pred eecCCCceeccCCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHHhhh
Q psy15532 10 VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~~~~ 58 (60)
.||++++ -..+|+|++.-.+- +.......++-|.++|..|.+.+
T Consensus 706 ~vd~~~~-Ts~~gVfA~GD~~~----g~~~vv~Av~~G~~AA~~I~~~L 749 (752)
T PRK12778 706 VVDEEMQ-SSIPGIYAGGDIVR----GGATVILAMGDGKRAAAAIDEYL 749 (752)
T ss_pred EeCCCCC-CCCCCEEEeCCccC----CcHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554 36789999843332 12234556777888888887654
No 102
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=21.97 E-value=2.3e+02 Score=18.31 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=23.9
Q ss_pred CCeEEecCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 21 ENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 21 ~nL~V~D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
+||+.+...+.|.-.+ ..-..+.-|+++|+.|+
T Consensus 418 ~~l~~aG~~~~~~~~~--~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYPG--GIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSSSTT--SHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCCC--cHHHHHHHHHHHHHHhC
Confidence 7999999999888552 45556667888888764
No 103
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=21.67 E-value=1.7e+02 Score=20.03 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=33.7
Q ss_pred ccCCeEEecCCCcCCCC------CCChHHHHHHHHHHHHHHHHhhhCC
Q psy15532 19 GVENVRVADASVFPTQL------NCNPISVVIMTAEKCAQMVLDKNKV 60 (60)
Q Consensus 19 g~~nL~V~D~Si~P~~~------~~np~~t~~ala~r~a~~i~~~~~~ 60 (60)
|.+|.++-++.+-+.-. +.-+.--+.+|.+.+-+.+.+++|+
T Consensus 244 GlkG~~iG~a~vS~kHanfivN~g~At~~di~~Li~~v~~~V~~~~gi 291 (307)
T PRK13906 244 NLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGI 291 (307)
T ss_pred CCCCCccCCEEEccccccEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 68888888888877755 3355678999999999999998875
No 104
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.49 E-value=2.9e+02 Score=20.68 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=30.9
Q ss_pred eecCCCceeccCCeEEecCCC---cCC-CCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVADASV---FPT-QLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si---~P~-~~~~np~~t~~ala~r~a~~i~ 55 (60)
.+|.++++-.++|||.+.--. +=. -.+.|-.+-.+..|.++++.+.
T Consensus 395 ~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa 444 (626)
T PRK07803 395 EVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAA 444 (626)
T ss_pred EEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHH
Confidence 578888888999999996321 110 1245667777777777776654
No 105
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=21.30 E-value=2.7e+02 Score=19.44 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=24.7
Q ss_pred ceecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 9 AVVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 9 ~Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
=.||.++|. ..+|+|++ |..-.|. -......-|..+|+.|.
T Consensus 292 i~vd~~~~t-~~~~IyAiGD~~~~~~-----~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 292 LKVNENYQT-AVPHIYAVGDVIGFPS-----LASASMDQGRIAAQHAV 333 (461)
T ss_pred EeeCCCccc-CCCCEEEeeecCCCcc-----cHhHHHHHHHHHHHHHc
Confidence 367888886 78999999 6553221 12233444555666554
No 106
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=21.12 E-value=35 Score=18.61 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.3
Q ss_pred CceeccCCeEEecCCC
Q psy15532 15 LLVHGVENVRVADASV 30 (60)
Q Consensus 15 ~~v~g~~nL~V~D~Si 30 (60)
++-.|.+++++++|++
T Consensus 85 L~~~G~~~v~~l~GG~ 100 (105)
T cd01525 85 LVKCGVPRVCILDGGI 100 (105)
T ss_pred HHHcCCCCEEEEeCcH
Confidence 4557888898888875
No 107
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=21.02 E-value=2.7e+02 Score=19.39 Aligned_cols=19 Identities=32% Similarity=0.442 Sum_probs=15.4
Q ss_pred eecCCCceeccCCeEEe-cCC
Q psy15532 10 VVDDQLLVHGVENVRVA-DAS 29 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~S 29 (60)
.||+++|. .++|+|.+ |..
T Consensus 275 ~vd~~~~T-s~~~IyA~GD~~ 294 (441)
T PRK08010 275 VVDKYLHT-TADNIWAMGDVT 294 (441)
T ss_pred EECCCccc-CCCCEEEeeecC
Confidence 58888887 78999998 654
No 108
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.80 E-value=83 Score=18.51 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=4.0
Q ss_pred CCeEEecC
Q psy15532 21 ENVRVADA 28 (60)
Q Consensus 21 ~nL~V~D~ 28 (60)
.+|+|++|
T Consensus 32 hdirVi~G 39 (95)
T COG2088 32 HDIRVIEG 39 (95)
T ss_pred eccEEEeC
Confidence 44555544
No 109
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.79 E-value=2.8e+02 Score=19.35 Aligned_cols=40 Identities=23% Similarity=0.137 Sum_probs=24.4
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++| -.++|+|++ |..-.|. .......-|..+|+.|.
T Consensus 292 ~vd~~~~-t~~~~VyAiGD~~~~~~-----~~~~A~~~g~~aa~ni~ 332 (462)
T PRK06416 292 EVDEQLR-TNVPNIYAIGDIVGGPM-----LAHKASAEGIIAAEAIA 332 (462)
T ss_pred eECCCCc-cCCCCEEEeeecCCCcc-----hHHHHHHHHHHHHHHHc
Confidence 5788888 478999999 5543221 12334455666666664
No 110
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.70 E-value=1.9e+02 Score=19.47 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=32.5
Q ss_pred ccCCeEEecCCCcCCCC------CCChHHHHHHHHHHHHHHHHhhhCC
Q psy15532 19 GVENVRVADASVFPTQL------NCNPISVVIMTAEKCAQMVLDKNKV 60 (60)
Q Consensus 19 g~~nL~V~D~Si~P~~~------~~np~~t~~ala~r~a~~i~~~~~~ 60 (60)
|.+|.++-++.+-+.-. +.-+.--+..|++.+-+.+.+++|+
T Consensus 239 GlkG~~~G~a~vs~~hanfivN~g~at~~dv~~L~~~v~~~V~~~~gi 286 (298)
T PRK13905 239 GLKGYRIGGAQVSEKHANFIINTGGATAADIEDLIEHVQKTVKEKFGV 286 (298)
T ss_pred CCCCCccCCEEEccccCcEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 67888887777776644 3355678999999999999998875
No 111
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=20.48 E-value=40 Score=19.03 Aligned_cols=16 Identities=50% Similarity=0.632 Sum_probs=13.1
Q ss_pred CceeccCCeEEecCCC
Q psy15532 15 LLVHGVENVRVADASV 30 (60)
Q Consensus 15 ~~v~g~~nL~V~D~Si 30 (60)
++..|.+++++.|+++
T Consensus 100 l~~~G~~~v~~l~GG~ 115 (122)
T cd01448 100 LRYFGHENVRVLDGGL 115 (122)
T ss_pred HHHcCCCCEEEecCCH
Confidence 5667999999999875
No 112
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=20.38 E-value=1.7e+02 Score=15.99 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=23.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhCC
Q psy15532 34 QLNCNPISVVIMTAEKCAQMVLDKNKV 60 (60)
Q Consensus 34 ~~~~np~~t~~ala~r~a~~i~~~~~~ 60 (60)
.+..||.+.+.--+.+-...+..++|+
T Consensus 56 ~~~~nP~~~~~~~~~~~~~~l~~~lGL 82 (100)
T PF05119_consen 56 NPKKNPAVSILNKAMKQMRSLASELGL 82 (100)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHcCC
Confidence 456799999999999999999988875
No 113
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=20.26 E-value=2.8e+02 Score=19.64 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.8
Q ss_pred eecCCCceeccCCeEEe-cCC
Q psy15532 10 VVDDQLLVHGVENVRVA-DAS 29 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~S 29 (60)
.||+++|. .++|+|.+ |.+
T Consensus 295 ~Vd~~~~T-s~~~IyA~GD~~ 314 (466)
T PRK07845 295 TVDRVSRT-SVPGIYAAGDCT 314 (466)
T ss_pred eECCCccc-CCCCEEEEeecc
Confidence 58888887 89999998 665
No 114
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=20.24 E-value=2.9e+02 Score=19.39 Aligned_cols=40 Identities=20% Similarity=0.081 Sum_probs=24.7
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. .++|+|++ |..-.|. -......-|..+|+.|.
T Consensus 287 ~vd~~~~T-s~~~VyAiGD~~~~~~-----~~~~A~~~g~~aa~ni~ 327 (463)
T TIGR02053 287 LVDETLRT-SNPGIYAAGDVTGGLQ-----LEYVAAKEGVVAAENAL 327 (463)
T ss_pred eECCCccC-CCCCEEEeeecCCCcc-----cHhHHHHHHHHHHHHhc
Confidence 58888887 88999999 5543221 12333444566666664
No 115
>PLN02507 glutathione reductase
Probab=20.22 E-value=2.7e+02 Score=20.13 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=25.2
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++|. .++|+|.+ |..-.+. -.-....-|..+++.|.
T Consensus 321 ~Vd~~~~T-s~p~IyAiGDv~~~~~-----l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 321 KVDEYSRT-NIPSIWAIGDVTNRIN-----LTPVALMEGTCFAKTVF 361 (499)
T ss_pred ecCCCCcC-CCCCEEEeeEcCCCCc-----cHHHHHHHHHHHHHHHc
Confidence 58888986 89999999 6653221 12233445556666654
No 116
>PRK09077 L-aspartate oxidase; Provisional
Probab=20.13 E-value=3.1e+02 Score=19.95 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=32.7
Q ss_pred eecCCCceeccCCeEEecCCCcCC-----CCCCChHHHHHHHHHHHHHHHHh
Q psy15532 10 VVDDQLLVHGVENVRVADASVFPT-----QLNCNPISVVIMTAEKCAQMVLD 56 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~D~Si~P~-----~~~~np~~t~~ala~r~a~~i~~ 56 (60)
.+|.++|. .++|||.+.-...-. -++.|..+.....|.++++.+.+
T Consensus 357 ~vd~~~~t-~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 357 MVDLHGRT-DLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred eECCCCcc-ccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 56899985 799999996533211 12357777888888888888754
No 117
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=20.06 E-value=2.7e+02 Score=19.68 Aligned_cols=40 Identities=28% Similarity=0.202 Sum_probs=23.8
Q ss_pred eecCCCceeccCCeEEe-cCCCcCCCCCCChHHHHHHHHHHHHHHHH
Q psy15532 10 VVDDQLLVHGVENVRVA-DASVFPTQLNCNPISVVIMTAEKCAQMVL 55 (60)
Q Consensus 10 Vvd~~~~v~g~~nL~V~-D~Si~P~~~~~np~~t~~ala~r~a~~i~ 55 (60)
.||+++| -.++|+|++ |.+- |... ......-|..+|+.|.
T Consensus 286 ~vd~~~~-Ts~~~IyA~GD~~~-~~~l----~~~A~~~g~~~a~ni~ 326 (452)
T TIGR03452 286 KVDEYGR-TSARGVWALGDVSS-PYQL----KHVANAEARVVKHNLL 326 (452)
T ss_pred eeCCCcc-cCCCCEEEeecccC-cccC----hhHHHHHHHHHHHHhc
Confidence 6888888 589999999 5543 2111 1123344555666554
Done!