RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15532
(60 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 74.9 bits (185), Expect = 5e-18
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG DP AVVD + VHGVE +RV DAS+ PT N N + IM AEK A ++ +
Sbjct: 480 MGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGR 534
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 68.9 bits (169), Expect = 4e-17
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKC 50
MG D VVD L VHGV+N+RV DASVFP+ + NP + AE+
Sbjct: 91 MGADPDD-GVVDPDLRVHGVDNLRVVDASVFPSSPSGNPTLTIYALAERA 139
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 72.5 bits (178), Expect = 4e-17
Identities = 31/56 (55%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 1 MGPASDPEAVVDD-QLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
MG SDP AVVDD L VHG+EN+RV DASV PT NP +I AE+ A +L
Sbjct: 481 MG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHIL 534
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 71.1 bits (174), Expect = 1e-16
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MGPASD +VVD + VHG+E +RV DAS+ P N N + VIM EK A ++ K
Sbjct: 473 MGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK 529
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 49.0 bits (117), Expect = 8e-09
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
MG DP AVVD + V GVE + V D S+ P + P + +M AE+ A+ +
Sbjct: 433 MGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVAERAAEFLG 487
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 32.1 bits (73), Expect = 0.007
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 10 VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIM 45
VVD V GV +RV D S F NP + V+M
Sbjct: 532 VVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMM 567
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 29.1 bits (65), Expect = 0.086
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 6 DPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
+ V + VH +N+ V PT NP + A K A+ +++
Sbjct: 491 EQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542
>gnl|CDD|226050 COG3519, COG3519, Type VI protein secretion system component VasA
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 621
Score = 25.8 bits (57), Expect = 1.2
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 3 PASDPEAVVDDQLLVHGVENVRVADASVFP-----------TQLNCNPISVVIMTAEKCA 51
P DP+ ++ V V N+ A P +QL+ N +S+ A K
Sbjct: 451 PQGDPDLTLETNAPVAAVRNLTAPSAPQAPVADDALAWRLISQLSLNYLSLADNDALKGV 510
Query: 52 Q 52
Sbjct: 511 P 511
>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional.
Length = 263
Score = 24.2 bits (53), Expect = 4.7
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 44 IMTAEKCAQMVL 55
IM+AE+CA+ +L
Sbjct: 209 IMSAEECAEAIL 220
>gnl|CDD|163469 TIGR03757, conj_TIGR03757, integrating conjugative element protein,
PFL_4709 family. Members of this protein belong to
extended genomic regions that appear to be spread by
conjugative transfer [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 113
Score = 23.8 bits (52), Expect = 5.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVA 26
+G P VVD + +V+G +V A
Sbjct: 80 LGVTKIPAVVVDRRYVVYGETDVARA 105
>gnl|CDD|233835 TIGR02361, dak_ATP, dihydroxyacetone kinase, ATP-dependent. This
family consists of examples of the form of
dihydroxyacetone kinase (also called glycerone kinase)
that uses ATP (2.7.1.29) as the phosphate donor, rather
than a phosphoprotein as in E. coli. This form is
composed of a single chain with separable domains
homologous to the K and L subunits of the E. coli
enzyme, and is found in yeasts and other eukaryotes and
in some bacteria, including Citrobacter freundii. The
member from tomato has been shown to phosphorylate
dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some
other aldoses and ketoses (PMID:11985845).
Length = 574
Score = 23.9 bits (52), Expect = 7.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 10 VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLD 56
V +QL +H + F T LN S+ ++ A + + +LD
Sbjct: 282 EVVEQLALHYNIIPVRIYSGTFMTSLNGPGFSITLLNATEAGKSILD 328
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.374
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,849,626
Number of extensions: 186116
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 13
Length of query: 60
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 29
Effective length of database: 9,562,628
Effective search space: 277316212
Effective search space used: 277316212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)