RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15532
(60 letters)
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 91.5 bits (228), Expect = 5e-24
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
MG D + +D +L V GV +RVADASV P + NP V+M E+CA ++
Sbjct: 473 MGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 91.1 bits (227), Expect = 7e-24
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
M P + VVD+ V+GV+ +RV D S+ PTQ++ + ++V A K + +L
Sbjct: 523 MMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAIL 576
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 91.1 bits (227), Expect = 7e-24
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLD 56
M + VVD V+G + +RV D S+ PTQ++ + +++ A K A +LD
Sbjct: 527 MMS-RELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILD 581
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 89.5 bits (223), Expect = 2e-23
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
M P VVD L V GV+ +R+ D S+ P N + + + ++ A ++
Sbjct: 509 MSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIK 563
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 88.4 bits (220), Expect = 6e-23
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59
+ + + VVD +L VHG++ +RVADASV P +C + V EKCA M+ ++K
Sbjct: 517 LSK-NIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHK 574
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 84.8 bits (211), Expect = 1e-21
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59
MG DP+AVVD L + ++N+ V DAS+ P + V+ AE A+ +
Sbjct: 469 MGK--DPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQYHHHHH 525
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 84.9 bits (211), Expect = 1e-21
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
+G S AVVD + V G N+ + DA + P NP ++ AE+ A +L
Sbjct: 487 IGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 540
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 77.2 bits (191), Expect = 5e-19
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59
+G V+D V G+ +RV D S FP +P +M +L +
Sbjct: 466 VG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERS 518
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 56.6 bits (136), Expect = 9e-12
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
+G DD V G +N+ V D S+ P + NP + AE+ + ++ ++
Sbjct: 449 LG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 500
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 52.5 bits (125), Expect = 2e-10
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 1 MGPASDPEA---VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDK 57
MG D + V+ V G +N+ + PT NP + A K + +
Sbjct: 555 MG--FDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQN 612
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 52.1 bits (124), Expect = 4e-10
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 10 VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKN 58
D+ + + V D S+ P + NP + AE+ ++ +
Sbjct: 457 ATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSD 505
>1efp_A ETF, protein (electron transfer flavoprotein); electron
transport, glutaric acidemia type II; HET: FAD AMP;
2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
c.31.1.2
Length = 307
Score = 24.0 bits (53), Expect = 3.1
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 5 SDPEAVVDDQLLVHGVENVRVADASVFPTQL 35
+ +A ++ + GV V VA+ +++ +L
Sbjct: 38 ASAKAAAEEAAKIAGVAKVLVAEDALYGHRL 68
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Length = 315
Score = 23.6 bits (52), Expect = 4.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 5 SDPEAVVDDQLLVHGVENVRVADASVFPTQL 35
+ + V D V G+ V VA V+ L
Sbjct: 40 TKCDKVAQDLCKVAGIAKVLVAQHDVYKGLL 70
>1t6l_A DNA polymerase processivity factor; processivity fold, replication;
HET: DNA; 1.85A {Human herpesvirus 5} SCOP: d.131.1.2
d.131.1.2 PDB: 1yyp_A*
Length = 290
Score = 22.8 bits (48), Expect = 8.8
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 1 MGPASDPEAVVDDQLLVHGVENVR--VADASVFPTQLNCN----PISVVIMTAEKCAQMV 54
+ S+ E ++++ HGV+N+R V + + T LNC P ++ I+T V
Sbjct: 195 LTNGSELEFTSNNRVSFHGVKNMRINVQLKNFYQTLLNCAVTKLPCTLRIVTEHDTLLYV 254
Query: 55 LDKNKV 60
+N +
Sbjct: 255 ASRNGL 260
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.374
Gapped
Lambda K H
0.267 0.0845 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 871,795
Number of extensions: 36922
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 15
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)