RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15532
         (60 letters)



>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
           niger [TaxId: 5061]}
          Length = 385

 Score = 61.8 bits (149), Expect = 5e-14
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 6   DPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLD 56
           +   VVD+   V+GV+ +RV D S+ PTQ++ + ++V    A K +  +L+
Sbjct: 329 EMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILE 379


>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
           fungus (Peniophora sp. SG) [TaxId: 204723]}
          Length = 379

 Score = 53.8 bits (128), Expect = 3e-11
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 1   MGPASDPE-AVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLDKNK 59
           MG     +   V+    V G +N+ +      PT    NP    +  A K  + +     
Sbjct: 315 MGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFT 374


>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
           amagasakiense [TaxId: 63559]}
          Length = 391

 Score = 52.6 bits (125), Expect = 9e-11
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 9   AVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVLD 56
            VVD    V+G + +RV D S+ PTQ++ + +++    A K A  +LD
Sbjct: 338 GVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILD 385


>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
           flavocytochrome cellobiose dehydrogenase (CDH),
           FAD-binding domain {Fungus (Phanerochaete chrysosporium)
           [TaxId: 5306]}
          Length = 360

 Score = 51.6 bits (122), Expect = 2e-10
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MGPASDPEAVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
           +G  S   AVVD  + V G  N+ + DA + P     NP   ++  AE+ A  +L
Sbjct: 301 IGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 354


>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
           family {Brevibacterium sterolicum [TaxId: 1702]}
          Length = 370

 Score = 28.7 bits (63), Expect = 0.026
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 17  VHGVENVRVADASVFPTQLNCNPISVVIMTAEKCAQMVL 55
           +     + V D S+ P  +  NP   +   AE+    ++
Sbjct: 328 LPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKII 366


>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
           family {Streptomyces sp. [TaxId: 1931]}
          Length = 367

 Score = 26.9 bits (58), Expect = 0.12
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 9   AVVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMT-AEKCAQMVLDKN 58
              DD   V G +N+ V D S+ P  +  NP  V I   AE+  + ++ ++
Sbjct: 316 KATDDYGRVAGYKNLYVTDGSLIPGSVGVNP-FVTITALAERNVERIIKQD 365


>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
           (Prunus dulcis) [TaxId: 3755]}
          Length = 351

 Score = 23.7 bits (50), Expect = 1.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 10  VVDDQLLVHGVENVRVADASVFPTQLNCNPISVVIMT 46
           V+D    V G+  +RV D S FP     +P    +M 
Sbjct: 299 VLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLML 335


>d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
           nucleotidohydrolase (dUTPase) {Feline immunodeficiency
           virus [TaxId: 11673]}
          Length = 118

 Score = 22.9 bits (49), Expect = 3.0
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 36  NCNPISVVIMTAEKCAQMVL 55
           N +  S+ +M  +K AQ+++
Sbjct: 84  NVSRKSITLMERQKIAQLII 103


>d1euwa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
           nucleotidohydrolase (dUTPase) {Escherichia coli [TaxId:
           562]}
          Length = 136

 Score = 22.0 bits (46), Expect = 5.6
 Identities = 7/20 (35%), Positives = 9/20 (45%)

Query: 36  NCNPISVVIMTAEKCAQMVL 55
           N    S  I   E+ AQM+ 
Sbjct: 103 NRGQDSFTIQPGERIAQMIF 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 202,731
Number of extensions: 6098
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 9
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)