BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15533
         (387 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A75|B Chain B, Crystal Structure Of Glutamate Complex Of Halotolerant
           γ-Glutamyltranspeptidase From Bacillus Subtilis
 pdb|3A75|D Chain D, Crystal Structure Of Glutamate Complex Of Halotolerant
           γ-Glutamyltranspeptidase From Bacillus Subtilis
          Length = 185

 Score = 33.1 bits (74), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)

Query: 148 LKTFLYH----LRIEAEVEVVEMTNNDISAYTYERTL---MMEQRNQMLRELRLNKKESL 200
           L+T LYH    + ++A VE   +  N +S+Y YE  +   ++ + N M  +   +  + +
Sbjct: 92  LQTILYHIEYGMELKAAVEEPRIYTNSMSSYRYEDGVPKDVLSKLNGMGHKFGTSPVD-I 150

Query: 201 GMVQAI-VDQHHDTNKGVTKSQ 221
           G VQ+I +D  + T KGV  S 
Sbjct: 151 GNVQSISIDHENGTFKGVADSS 172


>pdb|2V36|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase From
           Bacillus Subtilis
 pdb|2V36|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase From
           Bacillus Subtilis
          Length = 193

 Score = 33.1 bits (74), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)

Query: 148 LKTFLYH----LRIEAEVEVVEMTNNDISAYTYERTL---MMEQRNQMLRELRLNKKESL 200
           L+T LYH    + ++A VE   +  N +S+Y YE  +   ++ + N M  +   +  + +
Sbjct: 92  LQTILYHIEYGMELKAAVEEPRIYTNSMSSYRYEDGVPKDVLSKLNGMGHKFGTSPVD-I 150

Query: 201 GMVQAI-VDQHHDTNKGVTKSQ 221
           G VQ+I +D  + T KGV  S 
Sbjct: 151 GNVQSISIDHENGTFKGVADSS 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,812,035
Number of Sequences: 62578
Number of extensions: 398627
Number of successful extensions: 657
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 8
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)