Query psy15533
Match_columns 387
No_of_seqs 245 out of 772
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:45:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2082|consensus 100.0 1.4E-56 3.1E-61 459.6 20.3 286 14-302 750-1070(1075)
2 TIGR00930 2a30 K-Cl cotranspor 100.0 1.1E-55 2.3E-60 485.3 25.3 271 13-302 637-948 (953)
3 KOG1288|consensus 100.0 6.5E-34 1.4E-38 291.4 16.0 260 12-298 621-937 (945)
4 TIGR00930 2a30 K-Cl cotranspor 99.9 1.2E-22 2.6E-27 224.3 18.7 132 255-387 667-830 (953)
5 KOG2082|consensus 99.8 1.8E-19 3.9E-24 187.0 11.1 122 256-387 780-904 (1075)
6 KOG1288|consensus 99.6 8.1E-16 1.7E-20 159.1 10.5 107 276-386 709-830 (945)
7 KOG2083|consensus 98.2 2.2E-06 4.8E-11 89.1 5.3 56 25-84 580-635 (643)
8 COG0816 Predicted endonuclease 25.5 1.7E+02 0.0037 25.6 5.4 57 12-73 27-87 (141)
9 KOG2884|consensus 15.9 4.2E+02 0.0091 25.2 6.0 56 111-168 90-146 (259)
10 TIGR00250 RNAse_H_YqgF RNAse H 14.1 5.5E+02 0.012 21.8 6.0 29 242-272 37-65 (130)
No 1
>KOG2082|consensus
Probab=100.00 E-value=1.4e-56 Score=459.62 Aligned_cols=286 Identities=58% Similarity=0.946 Sum_probs=258.6
Q ss_pred hhccceeeech--HHHHHHHHHhcCCCCCCccEEEEccCCCCCcCCCchhHHHHHHHHHHHHhcccceeeccccccCCCC
Q psy15533 14 LLNWNEFFLFP--ISLLCFSVQTTGLGGMKPNTVILGWPYSWRQSDDLRTWEVFLNTVRVVSAAKMALLVPKGINFFPDT 91 (387)
Q Consensus 14 ~~~~~~~~v~p--~~G~~~Llq~sGLG~lkPNTvvlg~~~~w~~~~~~~~~~~~~~~l~da~~~~~~v~l~k~~~~f~~~ 91 (387)
+++|..++|++ ++|+++|+|+.|||+||||||++|||..|++.+++..+..|+++++++...+.++++.||++.||.+
T Consensus 750 ~~Gf~q~vv~~~ir~g~s~liQs~GlGglkpNtvl~~wP~~wr~e~~~~~~~tFi~~v~~~~a~~~al~v~K~i~~fP~~ 829 (1075)
T KOG2082|consen 750 VKGFAQTVVASNLREGISHLIQSCGLGGLKPNTVLMGWPEGWRQEEDPREWKTFIETVRDTTAAHLALLVAKGIDDFPSN 829 (1075)
T ss_pred hhhhhhhhcccchhhhhhhceeeccccCccCceEEEeCcchhcccccchHHHHHHHHHHHhhccceeEEEecCcccCchh
Confidence 67899999999 4999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCccceeEEeeeecCChhHhHHHHHHhcCCCCCCceEEEEEeecCcccHHHHHHHHHHHHHhcccccEEEEEEccCCCc
Q psy15533 92 SVKIVGTIDVWWIVHDGGLLMLLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEVVEMTNNDI 171 (387)
Q Consensus 92 ~~~~~~~IDVWWl~~dGgL~LlLa~lL~~~~~Wr~~klRVf~~~~~~~~~~~~~~~l~~lL~~lRI~Aev~vv~~~~~~i 171 (387)
.+++.|+|||||+.+|||++|+++|+|++|+.||+|++|+|.+++.+++..++|++++++|+++||+|++.||++.+.||
T Consensus 830 ~er~~G~IDvwWIVhDGG~lmLl~~LL~qhkvwr~C~~rif~vaq~~dns~~mk~dl~~flY~LRi~Aev~vVem~~~di 909 (1075)
T KOG2082|consen 830 VERFSGHIDVWWIVHDGGMLMLLPFLLRQHKVWRKCKMRIFTVAQEDDNSIQMKKDLQKFLYHLRIDAEVEVVEMHDSDI 909 (1075)
T ss_pred hhhhcCceeEEEEEecCchHHHHHHHHHHHHHHhhceeeEEEEeeccCcHHHHHHHHHHHHHhhcccceEEEEEecchhh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhHhHHHHHHHHHHhhhccccccchhhhhhccccCC---------------------------------CCCcc
Q psy15533 172 SAYTYERTLMMEQRNQMLRELRLNKKESLGMVQAIVDQHHDT---------------------------------NKGVT 218 (387)
Q Consensus 172 ~~~~~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~i~d~~~~~---------------------------------~~~~~ 218 (387)
+++++++++.+++|.++++++++++.++++ ++.++|++... ..++.
T Consensus 910 s~~~~ertl~mE~rsq~~~~m~~~k~~~~r-~~l~~d~~~~~~~~s~~s~~~~~~~~~~~~~~~~~t~~k~~~~~~~~~~ 988 (1075)
T KOG2082|consen 910 SAYTYERTLMMEQRSQMLRQMRLSKNERER-AQLIHDRNAPRRPSSLHSDEARPFETAPTKVQMTWTRDKYMASTSNPAF 988 (1075)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHhhhhhhhc-cccchhcCCccccccccccccccCCCCCcceechhhhhhHHHhccCCcc
Confidence 999999999999999999999988776654 34444443210 01112
Q ss_pred cccccccCCccccccccchhhhhhhhHHHHHHhcCcccceEEecCCCCCCCCCchhhhhHHHHHHHHHhcCceEEEeccc
Q psy15533 219 KSQTKTRMNPEEIDEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLERVLMVREE 298 (387)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~rlnelI~~~S~~A~LV~l~LP~p~~~~~~~~~~eY~~~L~~l~~~l~~vlLVrg~ 298 (387)
..++.++.+..+|+++|++|+|+++|||++|++||.+|+||+++||.||++.+..+. ||++++.+++++++|++|||.
T Consensus 989 ~~~~~k~~~~~~~~~snv~~mhTavkLN~vi~~~S~~a~lvLlnlP~PP~n~~~~~~--Ymeylevlte~l~Rvl~VrG~ 1066 (1075)
T KOG2082|consen 989 SLSGFKDLFSMKPDQSNVRRMHTAVKLNEVILNKSRDAQLVLLNLPGPPRNRQGDEN--YMEYLEVLTEGLPRVLLVRGG 1066 (1075)
T ss_pred hhccCCcccccChhhHHHHHHHHHHHHHHHHHhcCccccEEEecCcCCCCCCcchhh--HHHHHHHHHcCCCeEEEEccC
Confidence 334556666678899999999999999999999999999999999999999877766 999999999999999999999
Q ss_pred cccc
Q psy15533 299 KWTS 302 (387)
Q Consensus 299 ~~~~ 302 (387)
++++
T Consensus 1067 greV 1070 (1075)
T KOG2082|consen 1067 GREV 1070 (1075)
T ss_pred CceE
Confidence 8765
No 2
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=1.1e-55 Score=485.29 Aligned_cols=271 Identities=39% Similarity=0.627 Sum_probs=226.8
Q ss_pred hhhccceeeechH--HHHHHHHHhcCCCCCCccEEEEccCCCCCcCCCchhHHHHHHHHHHHHhcccceeeccccccCCC
Q psy15533 13 CLLNWNEFFLFPI--SLLCFSVQTTGLGGMKPNTVILGWPYSWRQSDDLRTWEVFLNTVRVVSAAKMALLVPKGINFFPD 90 (387)
Q Consensus 13 ~~~~~~~~~v~p~--~G~~~Llq~sGLG~lkPNTvvlg~~~~w~~~~~~~~~~~~~~~l~da~~~~~~v~l~k~~~~f~~ 90 (387)
.+.+|.++++++. +|+++|+|++|||+||||||+||||++|+.+ ++..+++|+++|++|++++++|++.|+++.||.
T Consensus 637 ~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~-~~~~~~~y~~~i~~a~~~~~~v~i~r~~~~~~~ 715 (953)
T TIGR00930 637 KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQA-EPRAWETYIGIIHDAFDAHLAVVVVRNSEGLPI 715 (953)
T ss_pred CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhc-cchhHHHHHHHHHHHHHcCCcEEEEcccccCCc
Confidence 4567889999994 9999999999999999999999999999875 467899999999999999999999999888874
Q ss_pred C--------------------------------------CCCc-cceeEEeeeecCChhHhHHHHHHhcCCCCCCceEEE
Q psy15533 91 T--------------------------------------SVKI-VGTIDVWWIVHDGGLLMLLPFLLRQHRTWKNCKLRI 131 (387)
Q Consensus 91 ~--------------------------------------~~~~-~~~IDVWWl~~dGgL~LlLa~lL~~~~~Wr~~klRV 131 (387)
+ ++++ +|+|||||+.|||||||||||||++++.||+|||||
T Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDvwW~~~dggL~lll~~ll~~~~~W~~~kiRv 795 (953)
T TIGR00930 716 SVLQVQEELENDCSEDSIELNDGKISTQPDMHLEASTQFQKKQGKGTIDVWWLVDDGGLTLLLPYLLTTKKVWKKCKIRI 795 (953)
T ss_pred hhhccccccccccccccccccccccccccccchhhhhhhhccCCCceEEEEEecCCCcHHHHHHHHHhcCccccCceEEE
Confidence 3 1233 389999999999999999999999999999999999
Q ss_pred EEeecCcccHHHHHHHHHHHHHhcccccEEEEEEccCCCccchhhHHhHhHHHHHHHHHHhhhccccccchhhhhhcccc
Q psy15533 132 FTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEVVEMTNNDISAYTYERTLMMEQRNQMLRELRLNKKESLGMVQAIVDQHH 211 (387)
Q Consensus 132 f~~~~~~~~~~~~~~~l~~lL~~lRI~Aev~vv~~~~~~i~~~~~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~i~d~~~ 211 (387)
|++++.+++.++++++|+++|++|||+|++.||++ |++++|.+++. ++|+++++++++++.+++++. .+...
T Consensus 796 f~~~~~~~~~~~~~~~~~~lL~~~RI~a~~~~v~~---di~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~ 867 (953)
T TIGR00930 796 FVGAQKDDRSEQEKKDMATLLYKFRIDAEVIVVLM---DINAKPQTESM--EAFEEMIRPFRLHKTEKDREA---KDPKM 867 (953)
T ss_pred EEEecCCchHHHHHHHHHHHHHHhCCCCEEEEEec---cCCCCcchhHH--HHHHHHHhhhhhccccccccc---ccccc
Confidence 99998888999999999999999999999999985 57777666554 688999999998766544321 11000
Q ss_pred CCCCCcccccccccCCccccccccchhhhhhhhHHHHHHhcCcccceEEecCCCCCCCCCchhhhhHHHHHHHHHhcCce
Q psy15533 212 DTNKGVTKSQTKTRMNPEEIDEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 291 (387)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlnelI~~~S~~A~LV~l~LP~p~~~~~~~~~~eY~~~L~~l~~~l~~ 291 (387)
..+.+-...+ ..++.++++++|++||||+|++||++|+||+|+||.||++..+... ||+|++.+++++||
T Consensus 868 ----~~~~~~~~~~----~~~~~~~~~~~~~~rlneli~~~S~~a~lv~~~lp~p~~~~~~~~~--Ym~~l~~lt~~l~p 937 (953)
T TIGR00930 868 ----TWTKPWKITD----AELQSNVRKSYRQVRLNELLLEYSRDAALVVLSLPVPRKGSISDEL--YMAWLEVLSEDLPP 937 (953)
T ss_pred ----cccCCccccc----hhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCHHH--HHHHHHHHhcCCCC
Confidence 0000000000 1134667899999999999999999999999999999998766656 99999999999999
Q ss_pred EEEeccccccc
Q psy15533 292 VLMVREEKWTS 302 (387)
Q Consensus 292 vlLVrg~~~~~ 302 (387)
++||||+++.+
T Consensus 938 ~llvrGn~~~v 948 (953)
T TIGR00930 938 VLLVRGNHRNV 948 (953)
T ss_pred eEEEecCCcee
Confidence 99999998764
No 3
>KOG1288|consensus
Probab=100.00 E-value=6.5e-34 Score=291.39 Aligned_cols=260 Identities=23% Similarity=0.331 Sum_probs=185.1
Q ss_pred HhhhccceeeechH--HHHHHHHHhcCCCCCCccEEEEccCCCCCcC---------------------------------
Q psy15533 12 FCLLNWNEFFLFPI--SLLCFSVQTTGLGGMKPNTVILGWPYSWRQS--------------------------------- 56 (387)
Q Consensus 12 ~~~~~~~~~~v~p~--~G~~~Llq~sGLG~lkPNTvvlg~~~~w~~~--------------------------------- 56 (387)
+++.+|.|+-++|. +|+|||++.||||+|||||+|+||++.-...
T Consensus 621 ~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~~~pq~~~q~~~~~s~~s~~~r~~~se~~s~~~P~~~~ 700 (945)
T KOG1288|consen 621 AGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDLEPPQDRFQNGLQKSSFSKEDRSEESESDSNPFPTRKD 700 (945)
T ss_pred hhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecCCCchhhhhcCccccccccCCccccccccccCCCcccC
Confidence 67889999999996 9999999999999999999999998542100
Q ss_pred C--CchhHHHHHHHHHHHHhcccceeeccccccCCCCCCC----ccceeEEeeeec------------CCh-hHhHHHHH
Q psy15533 57 D--DLRTWEVFLNTVRVVSAAKMALLVPKGINFFPDTSVK----IVGTIDVWWIVH------------DGG-LLMLLPFL 117 (387)
Q Consensus 57 ~--~~~~~~~~~~~l~da~~~~~~v~l~k~~~~f~~~~~~----~~~~IDVWWl~~------------dGg-L~LlLa~l 117 (387)
. +...+++||++++|++.+++|||+++||+.++.+..+ +++||||||++. +.+ ++||||+|
T Consensus 701 g~~~~~~pq~yVqil~D~l~m~kNv~var~f~~L~~~~~~r~~~~kkyIDvwPi~l~~p~~~~~~~~d~t~lfllQLa~I 780 (945)
T KOG1288|consen 701 GNEHDLNPQDYVQILEDMLVMSKNVCVARGFDRLDKPKLSRSCGQKKYIDVWPINLISPVGGEPGENDETYLFLLQLAWI 780 (945)
T ss_pred CChhhCCHHHHHHHHHHHHhcccceeeecccccCChhhhhcccCCceeEEeeeeeccccCCCCCCcchhHHHHHHHHHHH
Confidence 0 0134699999999999999999999999998754332 349999999852 223 58899999
Q ss_pred HhcCCCCCC-ceEEEEEeecCccc-HHHHHHHHHHHHHhcccccEEEEEEccCCCccchhhHHhHhHHHHHHHHHHhhhc
Q psy15533 118 LRQHRTWKN-CKLRIFTVAQMEDN-SIQMKKDLKTFLYHLRIEAEVEVVEMTNNDISAYTYERTLMMEQRNQMLRELRLN 195 (387)
Q Consensus 118 L~~~~~Wr~-~klRVf~~~~~~~~-~~~~~~~l~~lL~~lRI~Aev~vv~~~~~~i~~~~~~~t~~~~~~~~~~~~~~l~ 195 (387)
|.|.+.||+ |+||||+|++.+++ ...+++.|+++|+.+||+||+.||.++......+..++........ .+..
T Consensus 781 L~m~~~Wk~~~~LRvflcv~~~~~~~~~E~q~m~~mlq~lRI~aev~vv~~~~~~~~~~e~~~~~df~~~~-----r~~~ 855 (945)
T KOG1288|consen 781 LHMVSDWKSGRRLRVFLCVEFEEREGTAERQSMKQMLQTLRIEAEVVVVCLDAMNVDAQEKGDPIDFDYVD-----RRYT 855 (945)
T ss_pred HHhhHHhhccceEEEEEEecchhhhhhhhHHHHHHHHHHheecceEEEEEeeceeeeeeeccCCccccccc-----cccC
Confidence 999999998 67999999987663 3445566999999999999999998653222111111111000000 0000
Q ss_pred cccccchhhhhhccccCCCCCcccccccccCCccccccccchhhhhhhhHHHHHHhcCcccceEEecCCCCCCCCCch-h
Q psy15533 196 KKESLGMVQAIVDQHHDTNKGVTKSQTKTRMNPEEIDEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIE-R 274 (387)
Q Consensus 196 ~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlnelI~~~S~~A~LV~l~LP~p~~~~~~~-~ 274 (387)
.+++ +. ..+.+++- +....+-+.+-...||+.+++|.++++-++++|.||+...++ .
T Consensus 856 -----~~a~-----~~---~~s~~~~v---------~~~~~rs~~y~s~~~e~~~~~~~~Tals~~~l~~Pp~~sd~d~r 913 (945)
T KOG1288|consen 856 -----AKAE-----AV---APSASPEV---------EALFTRSLKYDSGWQEEGKRRGMNTALSLLYLPFPPRMSDPDFR 913 (945)
T ss_pred -----cccc-----cc---cCCCChhh---------hccccccccccccchhhhhhcCccccccccccCCCccccCcccc
Confidence 0000 00 00000100 000112245777899999999999999999999999766543 1
Q ss_pred hhhHHHHHHHHHhcCceEEEeccc
Q psy15533 275 ESNYMEFLEVLTEGLERVLMVREE 298 (387)
Q Consensus 275 ~~eY~~~L~~l~~~l~~vlLVrg~ 298 (387)
...|++.+..++.+++|.+++||-
T Consensus 914 ~~sy~~~~~~lT~~L~ptLlvhgv 937 (945)
T KOG1288|consen 914 SASYLELLPPLTVDLGPTLLVHGV 937 (945)
T ss_pred cHHHHHhhhhhcccCCCceeeccc
Confidence 256999999999999999999974
No 4
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.89 E-value=1.2e-22 Score=224.27 Aligned_cols=132 Identities=38% Similarity=0.630 Sum_probs=108.5
Q ss_pred ccceEEecCCCCCCCCCchhhhhHHHHHHHHHhcCceEEEecccccccccc-----------------------------
Q psy15533 255 EAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLERVLMVREEKWTSEEG----------------------------- 305 (387)
Q Consensus 255 ~A~LV~l~LP~p~~~~~~~~~~eY~~~L~~l~~~l~~vlLVrg~~~~~~~~----------------------------- 305 (387)
..+.|+|++|.-+.........+|...+++..+...+++++|+...++.+.
T Consensus 667 ~PNtv~lg~~~~w~~~~~~~~~~y~~~i~~a~~~~~~v~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (953)
T TIGR00930 667 KPNTLVMGYKKDWRQAEPRAWETYIGIIHDAFDAHLAVVVVRNSEGLPISVLQVQEELENDCSEDSIELNDGKISTQPDM 746 (953)
T ss_pred CCCEEEecCccchhhccchhHHHHHHHHHHHHHcCCcEEEEcccccCCchhhcccccccccccccccccccccccccccc
Confidence 468899999987664433333679999999999999999999876554220
Q ss_pred ---cCcCCCCCCCccceeeEEEeecCchHHhHHHHHHhcCCCccCceEEEEEeecCcccHHHHHHHHHHHHHHcCcccEE
Q psy15533 306 ---KSSLFPKGNSIVGTIDVWWIVHDGGLLMLLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEV 382 (387)
Q Consensus 306 ---~~~~~~~~~~~~~~IDVWW~~~~ggL~llla~lL~~~~~W~~~~iRv~~~~~~~~~~~~~~~~l~~lL~~~RI~aev 382 (387)
....|.+ ++.+|+|||||+.|||||+||+||||++|+.||+||||||++++++++.++++++|+++|++|||+||+
T Consensus 747 ~~~~~~~~~~-~~~~~~IDvwW~~~dggL~lll~~ll~~~~~W~~~kiRvf~~~~~~~~~~~~~~~~~~lL~~~RI~a~~ 825 (953)
T TIGR00930 747 HLEASTQFQK-KQGKGTIDVWWLVDDGGLTLLLPYLLTTKKVWKKCKIRIFVGAQKDDRSEQEKKDMATLLYKFRIDAEV 825 (953)
T ss_pred chhhhhhhhc-cCCCceEEEEEecCCCcHHHHHHHHHhcCccccCceEEEEEEecCCchHHHHHHHHHHHHHHhCCCCEE
Confidence 0011211 134689999999999999999999999999999999999999988889999999999999999999999
Q ss_pred EEEeC
Q psy15533 383 EVVEM 387 (387)
Q Consensus 383 ~vv~~ 387 (387)
.||+|
T Consensus 826 ~~v~~ 830 (953)
T TIGR00930 826 IVVLM 830 (953)
T ss_pred EEEec
Confidence 99985
No 5
>KOG2082|consensus
Probab=99.80 E-value=1.8e-19 Score=186.99 Aligned_cols=122 Identities=54% Similarity=0.960 Sum_probs=102.5
Q ss_pred cceEEecCCCCCCCCCchhhhhHHHHHHHHHhcC--ceEEEecccccccccccCcCCCCC-CCccceeeEEEeecCchHH
Q psy15533 256 AQLVILNLPGPPKETNIERESNYMEFLEVLTEGL--ERVLMVREEKWTSEEGKSSLFPKG-NSIVGTIDVWWIVHDGGLL 332 (387)
Q Consensus 256 A~LV~l~LP~p~~~~~~~~~~eY~~~L~~l~~~l--~~vlLVrg~~~~~~~~~~~~~~~~-~~~~~~IDVWW~~~~ggL~ 332 (387)
.+.|+++||..++..... .+|..+++.+.... .+.++|..+ ++.||+. ++..|.|||||+.+|||++
T Consensus 780 pNtvl~~wP~~wr~e~~~--~~~~tFi~~v~~~~a~~~al~v~K~--------i~~fP~~~er~~G~IDvwWIVhDGG~l 849 (1075)
T KOG2082|consen 780 PNTVLMGWPEGWRQEEDP--REWKTFIETVRDTTAAHLALLVAKG--------IDDFPSNVERFSGHIDVWWIVHDGGML 849 (1075)
T ss_pred CceEEEeCcchhcccccc--hHHHHHHHHHHHhhccceeEEEecC--------cccCchhhhhhcCceeEEEEEecCchH
Confidence 467899999877655333 34788888766443 556666543 4678864 3566999999999999999
Q ss_pred hHHHHHHhcCCCccCceEEEEEeecCcccHHHHHHHHHHHHHHcCcccEEEEEeC
Q psy15533 333 MLLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEVVEM 387 (387)
Q Consensus 333 llla~lL~~~~~W~~~~iRv~~~~~~~~~~~~~~~~l~~lL~~~RI~aev~vv~~ 387 (387)
||++|||++|++||+|++|+|.+++.+++..++++.++++|+++||+|||.||||
T Consensus 850 mLl~~LL~qhkvwr~C~~rif~vaq~~dns~~mk~dl~~flY~LRi~Aev~vVem 904 (1075)
T KOG2082|consen 850 MLLPFLLRQHKVWRKCKMRIFTVAQEDDNSIQMKKDLQKFLYHLRIDAEVEVVEM 904 (1075)
T ss_pred HHHHHHHHHHHHHhhceeeEEEEeeccCcHHHHHHHHHHHHHhhcccceEEEEEe
Confidence 9999999999999999999999999899999999999999999999999999987
No 6
>KOG1288|consensus
Probab=99.63 E-value=8.1e-16 Score=159.13 Aligned_cols=107 Identities=30% Similarity=0.425 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHhcCceEEEecccccccccccCcCCCCCCCccceeeEEEee------------cCchHHhH-HHHHHhcC
Q psy15533 276 SNYMEFLEVLTEGLERVLMVREEKWTSEEGKSSLFPKGNSIVGTIDVWWIV------------HDGGLLML-LPFLLRQH 342 (387)
Q Consensus 276 ~eY~~~L~~l~~~l~~vlLVrg~~~~~~~~~~~~~~~~~~~~~~IDVWW~~------------~~ggL~ll-la~lL~~~ 342 (387)
.+|++.++++..+.+|+++.|++++++++...+.- ..++|||||+++ |+.++++| ||+||.+.
T Consensus 709 q~yVqil~D~l~m~kNv~var~f~~L~~~~~~r~~----~~kkyIDvwPi~l~~p~~~~~~~~d~t~lfllQLa~IL~m~ 784 (945)
T KOG1288|consen 709 QDYVQILEDMLVMSKNVCVARGFDRLDKPKLSRSC----GQKKYIDVWPINLISPVGGEPGENDETYLFLLQLAWILHMV 784 (945)
T ss_pred HHHHHHHHHHHhcccceeeecccccCChhhhhccc----CCceeEEeeeeeccccCCCCCCcchhHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999875532211 246899999986 66788888 99999999
Q ss_pred CCccC-ceEEEEEeecCcccHHHH-HHHHHHHHHHcCcccEEEEEe
Q psy15533 343 RTWKN-CKLRIFTVAQMEDNSIQM-KKDLKTFLYHLRIEAEVEVVE 386 (387)
Q Consensus 343 ~~W~~-~~iRv~~~~~~~~~~~~~-~~~l~~lL~~~RI~aev~vv~ 386 (387)
+.||. |++|||+|++.+++..+. ++.|+++|+++||+|||.||-
T Consensus 785 ~~Wk~~~~LRvflcv~~~~~~~~~E~q~m~~mlq~lRI~aev~vv~ 830 (945)
T KOG1288|consen 785 SDWKSGRRLRVFLCVEFEEREGTAERQSMKQMLQTLRIEAEVVVVC 830 (945)
T ss_pred HHhhccceEEEEEEecchhhhhhhhHHHHHHHHHHheecceEEEEE
Confidence 99997 569999999988754444 445999999999999998873
No 7
>KOG2083|consensus
Probab=98.15 E-value=2.2e-06 Score=89.14 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCCCCCccEEEEccCCCCCcCCCchhHHHHHHHHHHHHhcccceeeccc
Q psy15533 25 ISLLCFSVQTTGLGGMKPNTVILGWPYSWRQSDDLRTWEVFLNTVRVVSAAKMALLVPKG 84 (387)
Q Consensus 25 ~~G~~~Llq~sGLG~lkPNTvvlg~~~~w~~~~~~~~~~~~~~~l~da~~~~~~v~l~k~ 84 (387)
++|++.|+|.+ +||||++++||+++|++. ++.+..+|++++|||++.+.+|++.|.
T Consensus 580 ~~G~~~l~q~~---r~kpn~~~~g~k~~w~~~-~~~~~~~y~~~~~~afd~~~~v~i~r~ 635 (643)
T KOG2083|consen 580 REGAQILLQAG---RMKPNILVLGYKTNWEKA-SPEEISEYYGLLHDAFDFQVGVIIFRV 635 (643)
T ss_pred hhHHHHHHHHh---cCCCcEEEEeeccchhhC-ChhhHhHHHhhhhhhhccccceEEEEe
Confidence 49999999987 999999999999999985 688999999999999999999999873
No 8
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=25.47 E-value=1.7e+02 Score=25.63 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=37.2
Q ss_pred Hhhhccceeeech--HHHHHHHHHhcCCCCCCccEEEEccCCCCCcCCCc--hhHHHHHHHHHHHH
Q psy15533 12 FCLLNWNEFFLFP--ISLLCFSVQTTGLGGMKPNTVILGWPYSWRQSDDL--RTWEVFLNTVRVVS 73 (387)
Q Consensus 12 ~~~~~~~~~~v~p--~~G~~~Llq~sGLG~lkPNTvvlg~~~~w~~~~~~--~~~~~~~~~l~da~ 73 (387)
.+|+.+.+.-..| ..-+..++.-+ +|++||+|+|.+-.....+ .....|.+.|+.-+
T Consensus 27 ~pl~~i~~~~~~~~~~~~l~~li~~~-----~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~ 87 (141)
T COG0816 27 SPLETIKRKNGKPQDFNALLKLVKEY-----QVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRF 87 (141)
T ss_pred cchhhheeccccHhhHHHHHHHHHHh-----CCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 4566777666654 46667777766 9999999999754322223 23567777776544
No 9
>KOG2884|consensus
Probab=15.87 E-value=4.2e+02 Score=25.18 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=34.6
Q ss_pred HhHHHHHHhcCCCCCCceEEEEEeecCcccHHHHHHHHHHHHHhcccc-cEEEEEEccC
Q psy15533 111 LMLLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIE-AEVEVVEMTN 168 (387)
Q Consensus 111 ~LlLa~lL~~~~~Wr~~klRVf~~~~~~~~~~~~~~~l~~lL~~lRI~-Aev~vv~~~~ 168 (387)
.+++|++.-+|+.=++.|.||.+.+.+ ..++.+++|-++-+++.=+ ..|.||...+
T Consensus 90 ~i~iA~lalkhRqnk~~~~riVvFvGS--pi~e~ekeLv~~akrlkk~~Vaidii~FGE 146 (259)
T KOG2884|consen 90 GIQIAQLALKHRQNKNQKQRIVVFVGS--PIEESEKELVKLAKRLKKNKVAIDIINFGE 146 (259)
T ss_pred HHHHHHHHHHhhcCCCcceEEEEEecC--cchhhHHHHHHHHHHHHhcCeeEEEEEecc
Confidence 678999998998888866666655543 2333334565555554443 4566775443
No 10
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=14.14 E-value=5.5e+02 Score=21.82 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=23.2
Q ss_pred hhhHHHHHHhcCcccceEEecCCCCCCCCCc
Q psy15533 242 AVKLNEVIVNKSHEAQLVILNLPGPPKETNI 272 (387)
Q Consensus 242 ~~rlnelI~~~S~~A~LV~l~LP~p~~~~~~ 272 (387)
...|.++++++. .+.+++|+|....++.+
T Consensus 37 ~~~l~~~i~~~~--~~~iVvGlP~~~dG~~~ 65 (130)
T TIGR00250 37 WSRIEELLKEWT--PDKIVVGLPLNMDGTEG 65 (130)
T ss_pred HHHHHHHHHHcC--CCEEEEeccCCCCcCcC
Confidence 467999999998 57799999998766544
Done!