Query psy15533
Match_columns 387
No_of_seqs 245 out of 772
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:46:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g40_A Na-K-CL cotransporter; 100.0 4.2E-28 1.5E-32 230.6 15.5 140 13-164 79-231 (294)
2 3g40_A Na-K-CL cotransporter; 99.7 3.5E-15 1.2E-19 142.0 18.5 182 111-385 36-231 (294)
3 3ab8_A Putative uncharacterize 27.6 3E+02 0.01 23.9 10.0 117 246-384 100-219 (268)
4 1iv0_A Hypothetical protein; r 14.5 2.9E+02 0.01 21.1 5.4 50 241-295 39-91 (98)
5 1tvm_A PTS system, galactitol- 12.9 3.7E+02 0.012 20.9 5.7 38 127-164 20-58 (113)
6 3cis_A Uncharacterized protein 12.9 7E+02 0.024 22.0 9.0 97 245-358 112-210 (309)
7 1lm8_V VHL, VON hippel-lindau 12.5 82 0.0028 27.0 1.7 15 96-110 28-42 (160)
8 1nu0_A Hypothetical protein YQ 11.1 2.3E+02 0.0079 23.2 4.0 51 242-296 42-95 (138)
9 4ajy_V VON hippel-lindau disea 10.5 1.1E+02 0.0036 26.4 1.7 14 96-109 31-44 (163)
10 3mt0_A Uncharacterized protein 10.4 8.2E+02 0.028 21.3 16.3 113 246-379 78-214 (290)
No 1
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=99.95 E-value=4.2e-28 Score=230.56 Aligned_cols=140 Identities=17% Similarity=0.240 Sum_probs=116.9
Q ss_pred hhhccceeeechH--HHHHHHHHhcCCCCCCccEEEEccCCCCCcCCCchhHHHHHHHHHHHHhcccceeeccccccCCC
Q psy15533 13 CLLNWNEFFLFPI--SLLCFSVQTTGLGGMKPNTVILGWPYSWRQSDDLRTWEVFLNTVRVVSAAKMALLVPKGINFFPD 90 (387)
Q Consensus 13 ~~~~~~~~~v~p~--~G~~~Llq~sGLG~lkPNTvvlg~~~~w~~~~~~~~~~~~~~~l~da~~~~~~v~l~k~~~~f~~ 90 (387)
++..|..++.||. +|+.+++|++|+|+++||||+|||++ +++...+|+++|+.+..+++||++.+.- |.
T Consensus 79 ~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~------~~e~~~~y~~~i~~~~~~~~nVlil~~~---~~ 149 (294)
T 3g40_A 79 GVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPE------NRDRDEEIREIIRKASMYRMGVLLFSKH---PQ 149 (294)
T ss_dssp TCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCS------SGGGHHHHHHHHHHHHHTTCEEEEEECC---TT
T ss_pred CceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCC------ChhhhHHHHHHHHHHHHhCceEEEEecC---Cc
Confidence 4556788899885 99999999999999999999999995 4567789999999999999999998632 11
Q ss_pred CCCCccceeEEe-------ee----ecCChhHhHHHHHHhcCCCCCCceEEEEEeecCcccHHHHHHHHHHHHHhccccc
Q psy15533 91 TSVKIVGTIDVW-------WI----VHDGGLLMLLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEA 159 (387)
Q Consensus 91 ~~~~~~~~IDVW-------Wl----~~dGgL~LlLa~lL~~~~~Wr~~klRVf~~~~~~~~~~~~~~~l~~lL~~lRI~A 159 (387)
......++|||| |- ..||+||++|||+|+++ | +++||+.+|+++++..+++++.|++|++.+||.|
T Consensus 150 ~~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~n--W-~A~I~L~~vV~de~a~~~a~~~l~~Lv~~~Ri~a 226 (294)
T 3g40_A 150 AGLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSN--W-KASLSFMTFAPTAIQAQAAENFLQSLAELARIPN 226 (294)
T ss_dssp TTTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHH--H-TCEEEEEEECSSHHHHHHHHHHHHHHHHHHTCCS
T ss_pred cCCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhC--c-CCeEEEEEecCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 111223789999 72 46899999999999886 8 9999999999988888999999999999999999
Q ss_pred EEEEE
Q psy15533 160 EVEVV 164 (387)
Q Consensus 160 ev~vv 164 (387)
++.||
T Consensus 227 ~~~vv 231 (294)
T 3g40_A 227 VKMQV 231 (294)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 98776
No 2
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=99.66 E-value=3.5e-15 Score=141.99 Aligned_cols=182 Identities=14% Similarity=0.179 Sum_probs=133.1
Q ss_pred HhHHHHHHhcCCCCCCceEEEEEeecCccc---HHHHHHHHHHHHHhcccccEEEEEEccCCCccchhhHHhHhHHHHHH
Q psy15533 111 LMLLPFLLRQHRTWKNCKLRIFTVAQMEDN---SIQMKKDLKTFLYHLRIEAEVEVVEMTNNDISAYTYERTLMMEQRNQ 187 (387)
Q Consensus 111 ~LlLa~lL~~~~~Wr~~klRVf~~~~~~~~---~~~~~~~l~~lL~~lRI~Aev~vv~~~~~~i~~~~~~~t~~~~~~~~ 187 (387)
++.++.-|+.. +.-|-|+.+..+++. ..+. +.++.+|.+-.|.|-+.||..++.. + . -..
T Consensus 36 li~la~~lt~~----~G~ltv~~i~p~~~~~~l~~ql-~~l~~~l~~r~v~a~~~vi~a~d~~------~-G-----~~~ 98 (294)
T 3g40_A 36 TFDFLRDITYP----KGSVKLLGLAGNTDKENLLSQL-PSISEGFQEEGVFSSWTIIDTAEFE------E-N-----LVV 98 (294)
T ss_dssp HHHHHHHHHTT----TCEEEEEECC---CTTCHHHHH-HHHHHHHHHTTCEEEEEEC-----C------H-H-----HHH
T ss_pred HHHHHHHhccC----ceeEEEEEEccCCCccHHHHHH-HHHHHHHHhCCceeEEEEEecCChh------H-H-----HHH
Confidence 55677777776 456777777654332 2333 7788999999999999988644311 0 0 122
Q ss_pred HHHHhhhccccccchhhhhhccccCCCCCcccccccccCCccccccccchhhhhhhhHHHHHHhcCcccceEEecCCCCC
Q psy15533 188 MLRELRLNKKESLGMVQAIVDQHHDTNKGVTKSQTKTRMNPEEIDEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPP 267 (387)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlnelI~~~S~~A~LV~l~LP~p~ 267 (387)
+++.|++. .++ .+.|||++|.-+
T Consensus 99 lvq~yglg--------------------------------~l~-------------------------PNTilLg~~~~~ 121 (294)
T 3g40_A 99 GMEALTGS--------------------------------FFR-------------------------PSILFLRLPENR 121 (294)
T ss_dssp HHHHHTTC--------------------------------SSC-------------------------SCEEEEECCSSG
T ss_pred HHHHcCCC--------------------------------CCC-------------------------CCEEEeCCCCCh
Confidence 34444431 122 378999999554
Q ss_pred CCCCchhhhhHHHHHHHHHhcCceEEEecccccccccccCcCCCCCCCccceeeEE-------Ee----ecCchHHhHHH
Q psy15533 268 KETNIERESNYMEFLEVLTEGLERVLMVREEKWTSEEGKSSLFPKGNSIVGTIDVW-------WI----VHDGGLLMLLP 336 (387)
Q Consensus 268 ~~~~~~~~~eY~~~L~~l~~~l~~vlLVrg~~~~~~~~~~~~~~~~~~~~~~IDVW-------W~----~~~ggL~llla 336 (387)
+ +. .+|++++..+.+...+|++.+..++ ..|++ +++|||| |- ..||+||+++|
T Consensus 122 e---~~--~~y~~~i~~~~~~~~nVlil~~~~~-------~~fg~----~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllA 185 (294)
T 3g40_A 122 D---RD--EEIREIIRKASMYRMGVLLFSKHPQ-------AGLGR----QNLINLWIENRGLDWDISMELGNMDLALLIA 185 (294)
T ss_dssp G---GH--HHHHHHHHHHHHTTCEEEEEECCTT-------TTTTT----SCEEEEECCCC---CCCCSCCCTTHHHHHHH
T ss_pred h---hh--HHHHHHHHHHHHhCceEEEEecCCc-------cCCCC----CceEEEecCCCCCcccccccccchhHHHHHH
Confidence 3 33 4599999999999999999986542 35765 4789999 72 48999999999
Q ss_pred HHHhcCCCccCceEEEEEeecCcccHHHHHHHHHHHHHHcCcccEEEEE
Q psy15533 337 FLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEVV 385 (387)
Q Consensus 337 ~lL~~~~~W~~~~iRv~~~~~~~~~~~~~~~~l~~lL~~~RI~aev~vv 385 (387)
|+|+++ | +++||++++++++++.+++++.+.+|++.+||.|+++||
T Consensus 186 ylL~~n--W-~A~I~L~~vV~de~a~~~a~~~l~~Lv~~~Ri~a~~~vv 231 (294)
T 3g40_A 186 YKLKSN--W-KASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKMQV 231 (294)
T ss_dssp HHHHHH--H-TCEEEEEEECSSHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred HHHhhC--c-CCeEEEEEecCCHHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 999886 8 999999999999999999999999999999999998765
No 3
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=27.58 E-value=3e+02 Score=23.87 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=59.6
Q ss_pred HHHHHhcCcccceEEecCCCCC-CCCCchhhhhHHHHHHHHH-hcCceEEEecccccccccccCcCCCCCCCccceeeEE
Q psy15533 246 NEVIVNKSHEAQLVILNLPGPP-KETNIERESNYMEFLEVLT-EGLERVLMVREEKWTSEEGKSSLFPKGNSIVGTIDVW 323 (387)
Q Consensus 246 nelI~~~S~~A~LV~l~LP~p~-~~~~~~~~~eY~~~L~~l~-~~l~~vlLVrg~~~~~~~~~~~~~~~~~~~~~~IDVW 323 (387)
.+.|.+++.+++||+|+-.... .-. ... .-+..+.+. ...-||++|+.... + .+.|=|=
T Consensus 100 ~~~I~~~~~~~dliV~G~~g~~~~~~--~~~--~Gs~~~~v~~~a~~PVlvv~~~~~----------~-----~~~ilv~ 160 (268)
T 3ab8_A 100 HEAILRRARAADLLVLGRSGEAHGDG--FGG--LGSTADRVLRASPVPVLLAPGEPV----------E-----LEGALLG 160 (268)
T ss_dssp HHHHHHHHTTCSEEEEESSCTTSCTT--CCS--CCHHHHHHHHHCSSCEEEECSSCC----------C-----CCEEEEE
T ss_pred HHHHHhhccCCCEEEEeccCCCcccc--ccc--cchhHHHHHHhCCCCEEEECCCCC----------C-----CCEEEEE
Confidence 3444444999999999987543 211 111 223334333 44578999885321 1 1334333
Q ss_pred EeecCchHHhH-HHHHHhcCCCccCceEEEEEeecCcccHHHHHHHHHHHHHHcCcccEEEE
Q psy15533 324 WIVHDGGLLML-LPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEV 384 (387)
Q Consensus 324 W~~~~ggL~ll-la~lL~~~~~W~~~~iRv~~~~~~~~~~~~~~~~l~~lL~~~RI~aev~v 384 (387)
|-....+.-.+ .|.-+... .++++.++-+.+..+..++..+.+...|...-+..+..+
T Consensus 161 ~d~s~~~~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 219 (268)
T 3ab8_A 161 YDASESAVRALHALAPLARA---LGLGVRVVSVHEDPARAEAWALEAEAYLRDHGVEASALV 219 (268)
T ss_dssp CCSCHHHHHHHHHHHHHHHH---HTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ECCCHHHHHHHHHHHHhhhc---CCCEEEEEEEcCcHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 32222232222 22222221 368899998866543333444456666666656666544
No 4
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=14.49 E-value=2.9e+02 Score=21.11 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=30.7
Q ss_pred hhhhHHHHHHhcCcccceEEecCCCCCCCCCchhh---hhHHHHHHHHHhcCceEEEe
Q psy15533 241 TAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERE---SNYMEFLEVLTEGLERVLMV 295 (387)
Q Consensus 241 ~~~rlnelI~~~S~~A~LV~l~LP~p~~~~~~~~~---~eY~~~L~~l~~~l~~vlLV 295 (387)
-..++.+++.++. ...+++|+|.--.++..... ..|.+.|+.. . -||.++
T Consensus 39 ~~~~l~~li~e~~--v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~--~-lpV~~~ 91 (98)
T 1iv0_A 39 DVEALLDFVRREG--LGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR--G-VEVELW 91 (98)
T ss_dssp HHHHHHHHHHHHT--CCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT--T-CEEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC--C-CCEEEE
Confidence 3457899999984 67899999976544422211 3355555542 2 355554
No 5
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=12.91 E-value=3.7e+02 Score=20.87 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=29.5
Q ss_pred ceEEEEEeecCcccHHH-HHHHHHHHHHhcccccEEEEE
Q psy15533 127 CKLRIFTVAQMEDNSIQ-MKKDLKTFLYHLRIEAEVEVV 164 (387)
Q Consensus 127 ~klRVf~~~~~~~~~~~-~~~~l~~lL~~lRI~Aev~vv 164 (387)
...||.+++..+-.... +..+|++.+.+.-|+++|...
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~ 58 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQC 58 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 45788888877666655 588999999999898776665
No 6
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=12.85 E-value=7e+02 Score=22.05 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=48.8
Q ss_pred HHHHHHhcCcccceEEecCCCCCCCCCchhhhhHHHHHHHHH-hcCceEEEecccccccccccCcCCCCCCCccceeeEE
Q psy15533 245 LNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLT-EGLERVLMVREEKWTSEEGKSSLFPKGNSIVGTIDVW 323 (387)
Q Consensus 245 lnelI~~~S~~A~LV~l~LP~p~~~~~~~~~~eY~~~L~~l~-~~l~~vlLVrg~~~~~~~~~~~~~~~~~~~~~~IDVW 323 (387)
..+.|.+++.+++||+|+......-. ... +-...+.+. ...-||++|+...... ..+ ..+.|=|=
T Consensus 112 ~~~~I~~~a~~~DliV~G~~g~~~~~--~~~--~Gs~~~~vl~~~~~PVlvv~~~~~~~------~~~----~~~~Ilv~ 177 (309)
T 3cis_A 112 AVPTLVDMSKDAVLMVVGCLGSGRWP--GRL--LGSVSSGLLRHAHCPVVIIHDEDSVM------PHP----QQAPVLVG 177 (309)
T ss_dssp HHHHHHHHGGGEEEEEEESSCTTCCT--TCC--SCHHHHHHHHHCSSCEEEECTTCCCS------CSS----CCCCEEEE
T ss_pred HHHHHHHHhcCCCEEEECCCCCcccc--ccc--cCcHHHHHHHhCCCCEEEEcCCcccC------CCC----CCCeEEEE
Confidence 45566666779999999987543211 111 223344444 4456899988642110 011 12345443
Q ss_pred EeecCchHHhH-HHHHHhcCCCccCceEEEEEeecC
Q psy15533 324 WIVHDGGLLML-LPFLLRQHRTWKNCKLRIFTVAQM 358 (387)
Q Consensus 324 W~~~~ggL~ll-la~lL~~~~~W~~~~iRv~~~~~~ 358 (387)
|-....+.-.+ .|.-+.+. .++++.++-+.+.
T Consensus 178 ~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~ 210 (309)
T 3cis_A 178 VDGSSASELATAIAFDEASR---RNVDLVALHAWSD 210 (309)
T ss_dssp CCSSHHHHHHHHHHHHHHHH---TTCCEEEEEESCS
T ss_pred eCCChHHHHHHHHHHHHHHh---cCCEEEEEEEeec
Confidence 32222333333 33322221 2689999987653
No 7
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Probab=12.54 E-value=82 Score=26.96 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=12.4
Q ss_pred cceeEEeeeecCChh
Q psy15533 96 VGTIDVWWIVHDGGL 110 (387)
Q Consensus 96 ~~~IDVWWl~~dGgL 110 (387)
..+|||||++.+|..
T Consensus 28 ~~~V~v~WIDy~G~~ 42 (160)
T 1lm8_V 28 PRVVLPVWLNFDGEP 42 (160)
T ss_dssp SSCEEEEEECTTSCE
T ss_pred CCeEEEEEECCCCCE
Confidence 379999999988853
No 8
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=11.05 E-value=2.3e+02 Score=23.23 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=31.6
Q ss_pred hhhHHHHHHhcCcccceEEecCCCCCCCCCchhh---hhHHHHHHHHHhcCceEEEec
Q psy15533 242 AVKLNEVIVNKSHEAQLVILNLPGPPKETNIERE---SNYMEFLEVLTEGLERVLMVR 296 (387)
Q Consensus 242 ~~rlnelI~~~S~~A~LV~l~LP~p~~~~~~~~~---~eY~~~L~~l~~~l~~vlLVr 296 (387)
..++.+++.++. ...|++|+|.-..++..... ..|...|+... . -||.++.
T Consensus 42 ~~~l~~li~e~~--v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~-~-lpV~~~D 95 (138)
T 1nu0_A 42 WNIIERLLKEWQ--PDEIIVGLPLNMDGTEQPLTARARKFANRIHGRF-G-VEVKLHD 95 (138)
T ss_dssp HHHHHHHHHHHC--CSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHH-C-CCEEEEE
T ss_pred HHHHHHHHHHcC--CCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHh-C-CCEEEEc
Confidence 457999999984 77899999977655533221 23444454432 2 3666663
No 9
>4ajy_V VON hippel-lindau disease tumor suppressor; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 3zrc_C 3zrf_C* 3ztc_C* 3zun_C 4awj_C* 1lqb_C 3ztd_C* 4b95_C* 1lm8_V 1vcb_C 4b9k_C*
Probab=10.47 E-value=1.1e+02 Score=26.36 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=11.9
Q ss_pred cceeEEeeeecCCh
Q psy15533 96 VGTIDVWWIVHDGG 109 (387)
Q Consensus 96 ~~~IDVWWl~~dGg 109 (387)
..+|||+|+..+|.
T Consensus 31 ~~~V~v~WIDy~G~ 44 (163)
T 4ajy_V 31 PRVVLPVWLNFDGE 44 (163)
T ss_dssp SSCEEEEEECTTSC
T ss_pred CCeEEEEEECCCCC
Confidence 37999999998884
No 10
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=10.36 E-value=8.2e+02 Score=21.33 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=59.1
Q ss_pred HHHHHhc--CcccceEEecCCCCCCCCCchhhhhHHHHHHHHH-hcCceEEEecccccccccccCcCCCCCCCccceeeE
Q psy15533 246 NEVIVNK--SHEAQLVILNLPGPPKETNIERESNYMEFLEVLT-EGLERVLMVREEKWTSEEGKSSLFPKGNSIVGTIDV 322 (387)
Q Consensus 246 nelI~~~--S~~A~LV~l~LP~p~~~~~~~~~~eY~~~L~~l~-~~l~~vlLVrg~~~~~~~~~~~~~~~~~~~~~~IDV 322 (387)
.+.|.++ +.+++||+|+......-. ... +-...+.+. ....||++++.... ++ .+.|=|
T Consensus 78 ~~~i~~~a~~~~~dliV~G~~~~~~~~--~~~--~gs~~~~vl~~~~~PVlvv~~~~~---------~~-----~~~Ilv 139 (290)
T 3mt0_A 78 HQTIIAEQQAEGCGLIIKQHFPDNPLK--KAI--LTPDDWKLLRFAPCPVLMTKTARP---------WT-----GGKILA 139 (290)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCSCTTS--TTS--CCHHHHHHHHHCSSCEEEECCCSC---------ST-----TCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecccCCchh--hcc--cCHHHHHHHhcCCCCEEEecCCCC---------CC-----CCeEEE
Confidence 4445555 678999999987543211 111 223334333 45578999884321 11 234544
Q ss_pred EEeecCc-------hHHhH-HHHHHhcCCCccCceEEEEEeecCcc-------------cHHHHHHHHHHHHHHcCcc
Q psy15533 323 WWIVHDG-------GLLML-LPFLLRQHRTWKNCKLRIFTVAQMED-------------NSIQMKKDLKTFLYHLRIE 379 (387)
Q Consensus 323 WW~~~~g-------gL~ll-la~lL~~~~~W~~~~iRv~~~~~~~~-------------~~~~~~~~l~~lL~~~RI~ 379 (387)
=|-.... +.-.+ .|.-|.+. .++++.++-+.+... ..++.++.+..+++++-+.
T Consensus 140 a~D~s~~~~~~~~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (290)
T 3mt0_A 140 AVDVGNNDGEHRSLHAGIISHAYDIAGL---AKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFS 214 (290)
T ss_dssp EECTTCCSHHHHHHHHHHHHHHHHHHHH---TTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EECCCCcchhhhHHHHHHHHHHHHHHHH---cCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4423232 33333 44333332 269999997766421 1234456777788877664
Done!