Query psy15533
Match_columns 387
No_of_seqs 245 out of 772
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 23:46:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15533.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15533hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iv0a_ c.55.3.8 (A:) Hypothet 17.7 1E+02 0.0075 21.9 5.4 27 242-270 40-66 (98)
2 d1pzta_ c.68.1.2 (A:) beta 1,4 12.4 1.4E+02 0.0099 25.4 5.6 38 349-386 48-88 (271)
3 d1vgya2 d.58.19.1 (A:181-293) 11.5 1.8E+02 0.013 20.5 5.4 38 347-384 71-108 (113)
4 d1vgya2 d.58.19.1 (A:181-293) 10.7 1.9E+02 0.014 20.4 5.2 38 126-163 71-108 (113)
5 d2fdia1 b.82.2.10 (A:15-214) A 10.7 65 0.0048 26.1 2.6 27 26-52 84-110 (200)
6 d2fbjh2 b.1.1.2 (H:119-220) Im 10.2 62 0.0045 22.9 2.1 9 318-326 35-43 (102)
7 d1p1xa_ c.1.10.1 (A:) Deoxyrib 10.2 87 0.0063 26.5 3.4 37 16-53 42-80 (250)
8 d1vkza1 b.84.2.1 (A:314-399) G 9.7 1.3E+02 0.0095 20.8 3.7 38 342-379 40-77 (86)
9 d1u8sa2 d.58.18.5 (A:88-180) p 9.0 2.7E+02 0.02 18.8 5.4 59 327-385 15-91 (93)
10 d1lm8v_ b.3.3.1 (V:) VHL {Huma 8.7 63 0.0046 25.3 1.7 15 96-110 22-36 (150)
No 1
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=17.73 E-value=1e+02 Score=21.87 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=21.4
Q ss_pred hhhHHHHHHhcCcccceEEecCCCCCCCC
Q psy15533 242 AVKLNEVIVNKSHEAQLVILNLPGPPKET 270 (387)
Q Consensus 242 ~~rlnelI~~~S~~A~LV~l~LP~p~~~~ 270 (387)
...+.+++.++. .+.+++|+|....+.
T Consensus 40 ~~~l~~ii~e~~--i~~iVvGlP~~~dG~ 66 (98)
T d1iv0a_ 40 VEALLDFVRREG--LGKLVVGLPLRTDLK 66 (98)
T ss_dssp HHHHHHHHHHHT--CCEEEEECCCCCCSS
T ss_pred HHHHHHHHHhhc--cceeEcccccccCCC
Confidence 457999999985 778899999776544
No 2
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.39 E-value=1.4e+02 Score=25.42 Aligned_cols=38 Identities=11% Similarity=0.226 Sum_probs=22.3
Q ss_pred eEEEEEeecCcccHHHHH---HHHHHHHHHcCcccEEEEEe
Q psy15533 349 KLRIFTVAQMEDNSIQMK---KDLKTFLYHLRIEAEVEVVE 386 (387)
Q Consensus 349 ~iRv~~~~~~~~~~~~~~---~~l~~lL~~~RI~aev~vv~ 386 (387)
+-+|-++++-.++.++.+ ..|..+|.+-+++.++.|||
T Consensus 48 ~~kvaIIIPyRdR~~hL~~fl~~l~~~L~~q~~~y~I~vie 88 (271)
T d1pzta_ 48 PHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVIN 88 (271)
T ss_dssp SCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cceEEEEEecCChHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 444555555554444333 46667777777777777765
No 3
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]}
Probab=11.49 E-value=1.8e+02 Score=20.54 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=27.6
Q ss_pred CceEEEEEeecCcccHHHHHHHHHHHHHHcCcccEEEE
Q psy15533 347 NCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEV 384 (387)
Q Consensus 347 ~~~iRv~~~~~~~~~~~~~~~~l~~lL~~~RI~aev~v 384 (387)
.|.+++-+=..+++..+..++++.++++++-.++++.+
T Consensus 71 ~a~~~~~iR~~~~~~~~~i~~~i~~i~~~~~~~~~i~~ 108 (113)
T d1vgya2 71 ELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQW 108 (113)
T ss_dssp EEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 35665554334566778889999999999988887654
No 4
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]}
Probab=10.71 E-value=1.9e+02 Score=20.43 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=29.6
Q ss_pred CceEEEEEeecCcccHHHHHHHHHHHHHhcccccEEEE
Q psy15533 126 NCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEV 163 (387)
Q Consensus 126 ~~klRVf~~~~~~~~~~~~~~~l~~lL~~lRI~Aev~v 163 (387)
.|.+++-+-...++..+.+++++.++++++-.++++.+
T Consensus 71 ~a~~~~~iR~~~~~~~~~i~~~i~~i~~~~~~~~~i~~ 108 (113)
T d1vgya2 71 ELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQW 108 (113)
T ss_dssp EEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 57777766555567788889999999999988877654
No 5
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}
Probab=10.67 E-value=65 Score=26.12 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCCCccEEEEccCCC
Q psy15533 26 SLLCFSVQTTGLGGMKPNTVILGWPYS 52 (387)
Q Consensus 26 ~G~~~Llq~sGLG~lkPNTvvlg~~~~ 52 (387)
+=++.+....|+.+.+||.++++++.+
T Consensus 84 ~L~~~~~~~~~~~~~~pn~~LvN~Y~~ 110 (200)
T d2fdia1 84 NLCQRAATAAGYPDFQPDACLINRYAP 110 (200)
T ss_dssp HHHHHHHHHHTCTTCCCSEEEEEEECT
T ss_pred HHHHHHHHHcCCCccCCCeeEEEEecC
Confidence 445677778899999999999999865
No 6
>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.23 E-value=62 Score=22.88 Aligned_cols=9 Identities=44% Similarity=0.804 Sum_probs=7.0
Q ss_pred ceeeEEEee
Q psy15533 318 GTIDVWWIV 326 (387)
Q Consensus 318 ~~IDVWW~~ 326 (387)
+.|.|||..
T Consensus 35 ~~i~v~W~~ 43 (102)
T d2fbjh2 35 GTMNVTWGK 43 (102)
T ss_dssp CCEEEEESC
T ss_pred CcEEEEEcc
Confidence 469999964
No 7
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}
Probab=10.23 E-value=87 Score=26.47 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=29.5
Q ss_pred ccceeeechH--HHHHHHHHhcCCCCCCccEEEEccCCCC
Q psy15533 16 NWNEFFLFPI--SLLCFSVQTTGLGGMKPNTVILGWPYSW 53 (387)
Q Consensus 16 ~~~~~~v~p~--~G~~~Llq~sGLG~lkPNTvvlg~~~~w 53 (387)
+|.-+||.|. .=+..+++.++-.+.+--||+ |||...
T Consensus 42 ~~aaVCV~P~~v~~a~~~l~~~~~~~v~v~tVi-gFP~G~ 80 (250)
T d1p1xa_ 42 NTAAICIYPRFIPIARKTLKEQGTPEIRIATVT-NFPHGN 80 (250)
T ss_dssp ECSEEECCGGGHHHHHHHHHHTTCTTSEEEEEE-STTTCC
T ss_pred CeEEEEEChHHHHHHHHHhhhcCCCcceEEEEe-ccCCCC
Confidence 7889999997 445777787777789999985 999653
No 8
>d1vkza1 b.84.2.1 (A:314-399) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.71 E-value=1.3e+02 Score=20.81 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=30.2
Q ss_pred CCCccCceEEEEEeecCcccHHHHHHHHHHHHHHcCcc
Q psy15533 342 HRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIE 379 (387)
Q Consensus 342 ~~~W~~~~iRv~~~~~~~~~~~~~~~~l~~lL~~~RI~ 379 (387)
+..|...-=||+.++...++.+++++..-+.+++.+.+
T Consensus 40 ~~~l~t~GGRVl~v~a~g~~l~~A~~~aY~~i~~I~~~ 77 (86)
T d1vkza1 40 DGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHFE 77 (86)
T ss_dssp TTEEEECSSEEEEEEEEESSHHHHHHHHHHHHHHCBCT
T ss_pred CCeEEEcCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCC
Confidence 33555566799999988889999999888888887654
No 9
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=9.02 E-value=2.7e+02 Score=18.83 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=38.6
Q ss_pred cCchHHhHHHHHHhcCCCcc-C-----------------ceEEEEEeecCcccHHHHHHHHHHHHHHcCcccEEEEE
Q psy15533 327 HDGGLLMLLPFLLRQHRTWK-N-----------------CKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEVV 385 (387)
Q Consensus 327 ~~ggL~llla~lL~~~~~W~-~-----------------~~iRv~~~~~~~~~~~~~~~~l~~lL~~~RI~aev~vv 385 (387)
|--|+.--+..+|..+...= + -.+|+-.-.+...+..+.++++..+-+++.+++.+..|
T Consensus 15 DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~l~v~~si~~i 91 (93)
T d1u8sa2 15 DKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDVQGSLNFI 91 (93)
T ss_dssp CCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHHceeEEEEEEe
Confidence 44566666666666554331 0 12333333455556888999999999999999988765
No 10
>d1lm8v_ b.3.3.1 (V:) VHL {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.71 E-value=63 Score=25.31 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=12.6
Q ss_pred cceeEEeeeecCChh
Q psy15533 96 VGTIDVWWIVHDGGL 110 (387)
Q Consensus 96 ~~~IDVWWl~~dGgL 110 (387)
..+++|||+..+|..
T Consensus 22 ~~~v~l~WId~~G~~ 36 (150)
T d1lm8v_ 22 PRVVLPVWLNFDGEP 36 (150)
T ss_dssp SSCEEEEEECTTSCE
T ss_pred CCEEEEEEECCCCCE
Confidence 379999999988854
Done!