RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15533
(387 letters)
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 290 bits (744), Expect = 5e-90
Identities = 108/304 (35%), Positives = 154/304 (50%), Gaps = 58/304 (19%)
Query: 32 VQTTGLGGMKPNTVILGWPYSWRQSDDLRTWEVFLNTVRVVSAAKMALLVPKGINFFP-- 89
+Q +GLG MKPNT+++G+ WRQ++ R WE ++ + A +A++V + P
Sbjct: 658 IQASGLGRMKPNTLVMGYKKDWRQAE-PRAWETYIGIIHDAFDAHLAVVVVRNSEGLPIS 716
Query: 90 ------------------DTSVKIV-------------------GTIDVWWIVHDGGLLM 112
KI GTIDVWW+V DGGL +
Sbjct: 717 VLQVQEELENDCSEDSIELNDGKISTQPDMHLEASTQFQKKQGKGTIDVWWLVDDGGLTL 776
Query: 113 LLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEVVEMTNNDIS 172
LLP+LL + WK CK+RIF AQ +D S Q KKD+ T LY RI+AEV VV M DI+
Sbjct: 777 LLPYLLTTKKVWKKCKIRIFVGAQKDDRSEQEKKDMATLLYKFRIDAEVIVVLM---DIN 833
Query: 173 AYTYERTLMMEQRNQMLRELRLNKKESLGMVQAIVDQHHDTNKGVTKSQTKTRMNPEEID 232
A +T ME +M+R RL+K E + D K ++ E+
Sbjct: 834 A--KPQTESMEAFEEMIRPFRLHKTE---KDREAKDPKMTWTKPW-------KITDAEL- 880
Query: 233 EGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLERV 292
+ NVR+ + V+LNE+++ S +A LV+L+LP P K + YM +LEVL+E L V
Sbjct: 881 QSNVRKSYRQVRLNELLLEYSRDAALVVLSLPVPRK--GSIPDELYMAWLEVLSEDLPPV 938
Query: 293 LMVR 296
L+VR
Sbjct: 939 LLVR 942
Score = 140 bits (354), Expect = 3e-36
Identities = 57/137 (41%), Positives = 73/137 (53%), Gaps = 10/137 (7%)
Query: 254 HEAQLVILN---LPGPPKETNIERESNYMEFLEVLTEGLERVLMVREEKWTSEEGKSSLF 310
H A +V+ N LP + E E++ E L +G + S+ F
Sbjct: 701 HLAVVVVRNSEGLPISVLQVQEELENDCSEDSIELNDGKISTQPDMHLE------ASTQF 754
Query: 311 PKGNSIVGTIDVWWIVHDGGLLMLLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLK 370
K GTIDVWW+V DGGL +LLP+LL + WK CK+RIF AQ +D S Q KKD+
Sbjct: 755 QKKQG-KGTIDVWWLVDDGGLTLLLPYLLTTKKVWKKCKIRIFVGAQKDDRSEQEKKDMA 813
Query: 371 TFLYHLRIEAEVEVVEM 387
T LY RI+AEV VV M
Sbjct: 814 TLLYKFRIDAEVIVVLM 830
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 39.1 bits (91), Expect = 0.002
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 156 RIEAEVEVVEMTNNDISAYTYERTLMMEQRNQMLRELRLNKKESLGMVQAIVDQHHDTNK 215
I+AE E +E + Y E ++E++ Q + ELR H D N
Sbjct: 19 EIKAEEEALESEEKHLKEYDKEMEELLEEKMQHVEELRQ--------------IHADIN- 63
Query: 216 GVTKSQTKTRMNPEEIDEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLP 264
+++ K + E G + RMH + +N+ + +L + LP
Sbjct: 64 -DMETEIKQSKSELERRMGKIARMHGEYNPLKESINEMRKLELGLEELP 111
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 32.1 bits (73), Expect = 0.64
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 115 PFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIEAEVEVVEMTNNDISAY 174
L T K+ K + A++ +++++ F R+E + V+E D+S
Sbjct: 610 EQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAF--EERVEGLLAVLEAQFIDLSTL 667
Query: 175 T------YERTLMMEQRNQMLRELRLNKKESLGMVQAIVDQHH 211
L E+ L KE ++A ++ H
Sbjct: 668 FCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHR 710
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 30.5 bits (69), Expect = 1.7
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 138 EDNSIQMKKDLKTFLY-HL---RIEAEVEVVEMTNNDISAYTY-ERTLMMEQRNQMLREL 192
E + DL FL L +I V V E T AY+ E+ + Q+N L EL
Sbjct: 547 EKELTNLIPDLLGFLRGRLKNSKITMTVRVSEPTEV-NRAYSSVEKFQYLAQKNPALLEL 605
Query: 193 R 193
R
Sbjct: 606 R 606
>gnl|CDD|235268 PRK04282, PRK04282, exosome complex RNA-binding protein Rrp42;
Provisional.
Length = 271
Score = 29.1 bits (66), Expect = 4.2
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 36/80 (45%)
Query: 264 PGPPKETNIE---------RESNYMEFLEVLTEGLERVLMVREEKWTSEEGKS--SLFPK 312
PGPP E IE RES ++ EK E GK +F
Sbjct: 97 PGPPDENAIELARVVDRGIRESKAIDL----------------EKLVIEPGKKVWVVF-- 138
Query: 313 GNSIVGTIDVWWIVHDGGLL 332
IDV+ + HDG LL
Sbjct: 139 -------IDVYVLDHDGNLL 151
>gnl|CDD|213736 TIGR02773, addB_Gpos, helicase-exonuclease AddAB, AddB subunit.
DNA repair is accomplished by several different systems
in prokaryotes. Recombinational repair of
double-stranded DNA breaks involves the RecBCD pathway
in some lineages, and AddAB (also called RexAB) in
other. The AddA protein is conserved between the
firmicutes and the alphaproteobacteria, while the
partner protein is not. Nevertheless, the partner is
designated AddB in both systems. This model describes
the AddB protein as found Bacillus subtilis and related
species. Although the RexB protein of Streptococcus and
Lactococcus is considered to be orthologous,
functionally equivalent, and merely named differently,
all members of this protein family have a P-loop
nucleotide binding motif GxxGxGK[ST] at the N-terminus,
unlike RexB proteins, and a CxxCxxxxxC motif at the
C-terminus, both of which may be relevant to function
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1160
Score = 28.5 bits (64), Expect = 7.3
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 23/127 (18%)
Query: 274 RESNYMEFLEVLTEGL-ERVLMVREEKWTSEEGKS-------------SLFPKGNSIVGT 319
R S + LE L L E +L+ E+ + EE S S K
Sbjct: 675 RPSIIIHRLEELFPKLKESLLLNEPEQVSDEEQLSYVSNKLPTLSELTSQLRKWKRGYPI 734
Query: 320 IDVWWIVHDGGLLMLLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRIE 379
DVWW V++ R+ WK + + ++ + Q+++ LY RI+
Sbjct: 735 SDVWWDVYN---------WYREEDKWKQGLEYVLSGLFYDNETKQLQESKAKQLYGERIQ 785
Query: 380 AEVEVVE 386
A V +E
Sbjct: 786 ASVSRLE 792
>gnl|CDD|225239 COG2364, COG2364, Predicted membrane protein [Function unknown].
Length = 210
Score = 28.0 bits (63), Expect = 7.7
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 18/109 (16%)
Query: 20 FFLFPISLLCFSVQTTGLG--GMKPNTVILGWPYSWRQSDDLR--TWEVFLNTVRVVSAA 75
FFL + +L F + T L G P V+ L +W + L + +
Sbjct: 12 FFLIGLLILSFGISLTILAGLGTSPWDVL---HVGLSMQFGLTVGSWSIILGSCLIGCTW 68
Query: 76 K--------MALLVPKGINFFPDTSVKIVGTIDVW---WIVHDGGLLML 113
LL I F D + ++ T I GL+++
Sbjct: 69 ILLRKKPGLGTLLNALLIGVFIDLFLFLLPTPTALFSKLIFFLIGLVLI 117
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 28.1 bits (63), Expect = 7.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 212 DTNKGVTKSQTKTRMNPEEIDEGNVRRM 239
++N G ++ +T N EI E N +R
Sbjct: 125 ESNPGKRRNSKRTEANVAEIKESNEKRS 152
>gnl|CDD|216227 pfam00982, Glyco_transf_20, Glycosyltransferase family 20. Members
of this family belong to glycosyl transferase family 20.
OtsA (Trehalose-6-phosphate synthase) is homologous to
regions in the subunits of yeast trehalose-6-phosphate
synthase/phosphate complex.
Length = 470
Score = 28.0 bits (63), Expect = 8.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 87 FFPDTSVKIVGTIDVWWIVHDGGLLMLLPFLLRQ 120
F D V++ D+ W+ HD L MLLP +LR+
Sbjct: 127 LFADKIVEVYKDGDLIWV-HDYHL-MLLPQMLRK 158
>gnl|CDD|177153 MTH00090, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 284
Score = 27.9 bits (63), Expect = 9.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 9 PFLFCLLNWNEFFLFPISLLCFSVQTTGLGGM 40
P+ F L++ LF + L+ FSV TT + G+
Sbjct: 86 PYFFDFLSFEYSLLFFLCLIGFSVYTTLISGI 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,645,051
Number of extensions: 1898006
Number of successful extensions: 1592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1584
Number of HSP's successfully gapped: 21
Length of query: 387
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 288
Effective length of database: 6,546,556
Effective search space: 1885408128
Effective search space used: 1885408128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)