RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15533
(387 letters)
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta
sheet, transport protein; 1.90A {Methanosarcina
acetivorans}
Length = 294
Score = 84.1 bits (207), Expect = 2e-18
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 19/160 (11%)
Query: 32 VQTTGLGGMKPNTVILGWPYSWRQSDDLRTWEVFLNTVRVVSAAKMALLVPKGINFFPDT 91
++ +P+ + L P + + E +R S +M +L+ + P
Sbjct: 100 MEALTGSFFRPSILFLRLPENRDR------DEEIREIIRKASMYRMGVLL---FSKHPQA 150
Query: 92 SVKIVGTIDVWWI---------VHDGGLLMLLPFLLRQHRTWKNCKLRIFTVAQMEDNSI 142
+ I++W + G + + L + WK L T A +
Sbjct: 151 GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKA-SLSFMTFAPTAIQAQ 209
Query: 143 QMKKDLKTFLYHLRIEAEVEVVEMTNNDISAYTYERTLMM 182
+ L++ RI V N S+ +L +
Sbjct: 210 AAENFLQSLAELARIPNVKMQVLRENPIKSSKLPFASLHI 249
Score = 49.0 bits (116), Expect = 1e-06
Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 259 VILNLPGPPKETNIERESNYMEFLEVLTEGLERVLMVREEKWTSEEGKSSLFPKGNSI-- 316
+ L LP N +R+ E + + VL+ + + + N I
Sbjct: 113 LFLRLP-----ENRDRDEEIREIIRKASMYRMGVLLFSKHP-------QAGLGRQNLINL 160
Query: 317 --VGTIDVWWI-VHDGGLLMLLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFL 373
W I + G + + L + WK L T A + + L++
Sbjct: 161 WIENRGLDWDISMELGNMDLALLIAYKLKSNWKA-SLSFMTFAPTAIQAQAAENFLQSLA 219
Query: 374 YHLRIEAEVEVVEM 387
RI V
Sbjct: 220 ELARIPNVKMQVLR 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 52/289 (17%), Positives = 93/289 (32%), Gaps = 71/289 (24%)
Query: 132 FTVAQMEDNSIQMKKDLKTFLYHLRIEAEV-EVVEMTNNDISAYTYERTLMM---EQRNQ 187
F + + Q K L F + +V +M + +S + +M
Sbjct: 9 FETGEHQ---YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 188 MLRELRLNKKESLGMVQAIVDQHHDTNKGVTKSQTKTRMN-------------------P 228
L L+K+E MVQ V++ N S KT
Sbjct: 66 RLFWTLLSKQEE--MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 229 EEIDEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKET-------NIERESNYMEF 281
+ + NV R+ +KL + ++ ++I + G K + + + M+F
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-MDF 182
Query: 282 ------------LEVLTEGLERVLMVREEKWTSEEGKSSLFPKGNSIVGTIDVWWIVHDG 329
E + E L+++L + WTS SS + + I
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--------LRIHSI--QA 232
Query: 330 GLLMLLPFLLRQHRTWKNCKLRIFTVAQMEDNSIQMKKDLKTFLYHLRI 378
L LL + + ++NC L + N +Q K F +I
Sbjct: 233 ELRRLL-----KSKPYENC-LLVL------LN-VQNAKAWNAFNLSCKI 268
Score = 34.1 bits (77), Expect = 0.082
Identities = 30/206 (14%), Positives = 66/206 (32%), Gaps = 57/206 (27%)
Query: 57 DDL---RTWEVF------LNTVR------VVSAAKMA--LLVPKGINFFPDTSVKIVGTI 99
++ + W F L T R +SAA L + PD ++
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK- 309
Query: 100 DVWWI----------VHDGGLLM--LLPFLLRQHR-TWKNCK-LRIFTVAQMEDNSI--- 142
++ V ++ +R TW N K + + + ++S+
Sbjct: 310 ---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 143 ------QMKKDLKTFLYHLRIEAEV------EVVEMTNNDISAYTYERTLMMEQRNQM-- 188
+M L F I + +V++ + ++ +L+ +Q +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 189 -----LRELRLNKKESLGMVQAIVDQ 209
EL++ + + ++IVD
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDH 452
Score = 31.7 bits (71), Expect = 0.53
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 34/151 (22%)
Query: 269 ETNIERESNYMEFLEVLTEGLERVLMVRE------EKWTSEEGKSSLFPKGNSIVGTIDV 322
ET E + Y + L V + ++ + EE + +++ GT+ +
Sbjct: 10 ETG-EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRL 67
Query: 323 WWIVHDGGLLMLLPFL---LRQHRTW-------------------KNCKLRIFTVAQMED 360
+W + M+ F+ LR + + + R++ Q+
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 361 ----NSIQMKKDLKTFLYHLRIEAEVEVVEM 387
+ +Q L+ L LR V + +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.021
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Query: 138 EDNSIQ-MKKDLKTFLYH------LRIEAEVE 162
E +++ ++ LK LY L I+A +E
Sbjct: 18 EKQALKKLQASLK--LYADDSAPALAIKATME 47
Score = 34.5 bits (78), Expect = 0.021
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Query: 359 EDNSIQ-MKKDLKTFLYH------LRIEAEVE 383
E +++ ++ LK LY L I+A +E
Sbjct: 18 EKQALKKLQASLK--LYADDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 2.9
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 183 EQRNQMLREL--RLNKKESLGMVQA---IVDQHHDTNKGVTKSQTKTRMNPEE 230
E++ + L+EL E +A + + + ++ V K++ R+ +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 27.4 bits (60), Expect = 9.5
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 48 GWPYSWRQSDDLRTWEVFLNTVRVVSAAKMALLVPKGINFFPDTSVKIV-----GTIDVW 102
+ SW L V + V GIN PD + I V+
Sbjct: 189 PYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVY 248
Query: 103 WIVHDGGL 110
+ L
Sbjct: 249 EKHANWTL 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,918,624
Number of extensions: 348242
Number of successful extensions: 626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 18
Length of query: 387
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 292
Effective length of database: 4,049,298
Effective search space: 1182395016
Effective search space used: 1182395016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)