BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15534
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 30 AAVCQQQTALETRSSVSGEARRSRVQRAARFILQGTLFSLGGTNLTNLSGEVLE------ 83
A + +Q LET +VS E RS V+ + +G S G N+ + G V+E
Sbjct: 21 ANLMEQIHGLETLFTVSSEKMRSIVKHFISELDKG--LSKKGGNIPMIPGWVVEYPTGKE 78
Query: 84 QGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFV 143
G FLALDLGGTN RV+L+ L D Y +PD LR G+ +L+ F+A C+ +FV
Sbjct: 79 TGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFV 138
Query: 144 HEY 146
E+
Sbjct: 139 DEW 141
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHL-KKGLVTDEIVKH-YHIPDELRLGSGLKLFDFLAACIS 140
E G+FLALDLGGTNFRV+ + + GL E+ Y IP+++ GSG +LFD +A C++
Sbjct: 62 EHGEFLALDLGGTNFRVLWVKVTDNGLQKVEMENQIYAIPEDIMRGSGTQLFDHIAECLA 121
Query: 141 DFVHEYQVHDRVIPMG 156
+F+ + Q+ D+ +P+G
Sbjct: 122 NFMDKLQIKDKKLPLG 137
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLV--TDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E+G FLALDLGGTNFRV+L+ ++ G + K Y IP E+ G+G +LFD + CI+
Sbjct: 510 EKGDFLALDLGGTNFRVLLVRVRNGKWGGVEMHNKIYAIPQEVMHGTGDELFDHIVQCIA 569
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + +P+G
Sbjct: 570 DFLEYMGMKGVSLPLG 585
>pdb|3HM8|A Chain A, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|B Chain B, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|C Chain C, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|D Chain D, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
Length = 445
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGL-VTDEIVKHYHIPDELRLGSGLKLFDFLAACISD 141
E+G FLALDLGGTNFRV+L+ + G+ +T EI Y IP+ + GSG +LFD + CI D
Sbjct: 57 ERGDFLALDLGGTNFRVLLVRVTTGVQITSEI---YSIPETVAQGSGQQLFDHIVDCIVD 113
Query: 142 FVHEYQVHDRVIPMG 156
F + + + +P+G
Sbjct: 114 FQQKQGLSGQSLPLG 128
>pdb|3FR0|A Chain A, Human Glucokinase In Complex With 2-Amino Benzamide
Activator
pdb|3A0I|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
pdb|3GOI|A Chain A, Human Glucokinase In Complex With A Synthetic Activator
Length = 455
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK----HYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G VK Y IP++ G+ LFD+++ C
Sbjct: 60 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 119
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 120 ISDFLDKHQMKHKKLPLG 137
>pdb|4DCH|A Chain A, Insights Into Glucokinase Activation Mechanism:
Observation Of Multiple Distinct Protein Conformations
Length = 473
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK----HYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G VK Y IP++ G+ LFD+++ C
Sbjct: 70 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 129
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 130 ISDFLDKHQMKHKKLPLG 147
>pdb|3S41|A Chain A, Glucokinase In Complex With Activator And Glucose
pdb|4DHY|A Chain A, Crystal Structure Of Human Glucokinase In Complex With
Glucose And Activator
Length = 469
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK----HYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G VK Y IP++ G+ LFD+++ C
Sbjct: 74 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 133
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 134 ISDFLDKHQMKHKKLPLG 151
>pdb|1V4T|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3H1V|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
Length = 451
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK----HYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G VK Y IP++ G+ LFD+++ C
Sbjct: 56 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 115
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 116 ISDFLDKHQMKHKKLPLG 133
>pdb|3IMX|A Chain A, Crystal Structure Of Human Glucokinase In Complex With A
Synthetic Activator
Length = 455
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK----HYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G VK Y IP++ G+ LFD+++ C
Sbjct: 60 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 119
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 120 ISDFLDKHQMKHKKLPLG 137
>pdb|1V4S|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3VEY|A Chain A, Glucokinase In Complex With Glucose And Atpgs
Length = 455
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK----HYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G VK Y IP++ G+ LFD+++ C
Sbjct: 60 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 119
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 120 ISDFLDKHQMKHKKLPLG 137
>pdb|3F9M|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose And
Activator Showing A Mobile Flap
pdb|3FGU|A Chain A, Catalytic Complex Of Human Glucokinase
pdb|3ID8|A Chain A, Ternary Complex Of Human Pancreatic Glucokinase
Crystallized With Activator, Glucose And Amp-Pnp
pdb|3IDH|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose
pdb|3VEV|A Chain A, Glucokinase In Complex With An Activator And Glucose
pdb|3VF6|A Chain A, Glucokinase In Complex With Glucose And Activator
Length = 470
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK----HYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G VK Y IP++ G+ LFD+++ C
Sbjct: 75 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 134
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 135 ISDFLDKHQMKHKKLPLG 152
>pdb|3QIC|A Chain A, The Structure Of Human Glucokinase E339k Mutation
Length = 470
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK----HYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G VK Y IP++ G+ LFD+++ C
Sbjct: 75 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 134
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 135 ISDFLDKHQMKHKKLPLG 152
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E G FLALDLGGTNFRV+L+ ++ G + K Y IP E+ G+G +LFD + +CIS
Sbjct: 524 ENGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCIS 583
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + +P+G
Sbjct: 584 DFLDYMGIKGPRMPLG 599
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 83 EQGQFLALDLGGTNFRVI---LMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACI 139
E+G F+ALDLGG++FR++ + H K V E + Y P+ + GSG +LFD +A C+
Sbjct: 76 EKGDFIALDLGGSSFRILRVQVNHEKNQNVHME-SEVYDTPENIVHGSGSQLFDHVAECL 134
Query: 140 SDFVHEYQVHDRVIPMG 156
DF+ + ++ D+ +P+G
Sbjct: 135 GDFMEKRKIKDKKLPVG 151
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E G FLALDLGGTNFRV+L+ ++ G + K Y IP E+ G+G +LFD + +CIS
Sbjct: 524 ENGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCIS 583
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + +P+G
Sbjct: 584 DFLDYMGIKGPRMPLG 599
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 83 EQGQFLALDLGGTNFRVI---LMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACI 139
E+G F+ALDLGG++FR++ + H K V E + Y P+ + GSG +LFD +A C+
Sbjct: 76 EKGDFIALDLGGSSFRILRVQVNHEKNQNVHME-SEVYDTPENIVHGSGSQLFDHVAECL 134
Query: 140 SDFVHEYQVHDRVIPMG 156
DF+ + ++ D+ +P+G
Sbjct: 135 GDFMEKRKIKDKKLPVG 151
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E G FLALDLGGTNFRV+L+ ++ G + K Y IP E+ G+G +LFD + +CIS
Sbjct: 524 ENGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCIS 583
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + +P+G
Sbjct: 584 DFLDYMGIKGPRMPLG 599
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 83 EQGQFLALDLGGTNFRVI---LMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACI 139
E+G F+ALDLGG++FR++ + H K V E + Y P+ + GSG +LFD +A C+
Sbjct: 76 EKGDFIALDLGGSSFRILRVQVNHEKNQNVHME-SEVYDTPENIVHGSGSQLFDHVAECL 134
Query: 140 SDFVHEYQVHDRVIPMG 156
DF+ + ++ D+ +P+G
Sbjct: 135 GDFMEKRKIKDKKLPVG 151
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E G FLALDLGGTNFRV+L+ ++ G + K Y IP E+ G+G +LFD + +CIS
Sbjct: 524 EHGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYSIPLEIMQGTGDELFDHIVSCIS 583
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + +P+G
Sbjct: 584 DFLDYMGIKGPRMPLG 599
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 83 EQGQFLALDLGGTNFRVI---LMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACI 139
E+G F+ALDLGG++FR++ + H K V+ E + Y P+ + GSG +LFD +A C+
Sbjct: 76 EKGDFIALDLGGSSFRILRVQVNHEKNQNVSME-SEIYDTPENIVHGSGTQLFDHVADCL 134
Query: 140 SDFVHEYQVHDRVIPMG 156
DF+ + ++ D+ +P+G
Sbjct: 135 GDFMEKKKIKDKKLPVG 151
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E G FLALDLGG NFRV+L+ ++ G + K Y IP E+ G+G +LFD + +CIS
Sbjct: 524 ENGDFLALDLGGANFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCIS 583
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + +P+G
Sbjct: 584 DFLDYMGIKGPRMPLG 599
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 83 EQGQFLALDLGGTNFRVI---LMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACI 139
E+G F+ALDLGG++FR++ + H K V E + Y P+ + GSG +LFD +A C+
Sbjct: 76 EKGDFIALDLGGSSFRILRVQVNHEKNQNVHME-SEVYDTPENIVHGSGSQLFDHVAECL 134
Query: 140 SDFVHEYQVHDRVIPMG 156
DF+ + ++ D+ +P+G
Sbjct: 135 GDFMEKRKIKDKKLPVG 151
>pdb|1BDG|A Chain A, Hexokinase From Schistosoma Mansoni Complexed With Glucose
Length = 451
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 83 EQGQFLALDLGGTNFRVILMHLK-KGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISD 141
E G FLALDLGGTN+RV+ + L+ KG + Y IP E GSG +LF ++A ++D
Sbjct: 66 ETGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLAD 125
Query: 142 FVHEYQVHDRVIPMG 156
F+ + D+ +G
Sbjct: 126 FLENNGMKDKKFDLG 140
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 51.2 bits (121), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 67 FSLGGTNLTNLSGEVL------EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP 120
S G N+ + G V+ E G FLA+DLGGTN RV+L+ L D Y +P
Sbjct: 56 LSKKGGNIPMIPGWVMDFPTGKESGDFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRLP 115
Query: 121 DELRLGSGL-KLFDFLAACISDFVHEY--QVHDRVIPMG 156
D +R +L++F+A + F+ E Q IP+G
Sbjct: 116 DAMRTTQNPDELWEFIADSLKAFIDEQFPQGISEPIPLG 154
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 39 LETRSSVSGEARRSRVQRAARFILQGTLFSLGGTNLTNLSGEVLE------QGQFLALDL 92
LE +V E R V+ + +G + G N+ + G V+E G +LA+DL
Sbjct: 30 LEDMFTVDSETLRKVVKHFIDELNKG--LTKKGGNIPMIPGWVMEFPTGKESGNYLAIDL 87
Query: 93 GGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGL-KLFDFLAACISDFVHEYQVHDR 151
GGTN RV+L+ L D Y +P ++R +L+ F+A + DF+ E ++ +
Sbjct: 88 GGTNLRVVLVKLSGNHTFDTTQSKYKLPHDMRTTKHQEELWSFIADSLKDFMVEQELLNT 147
Query: 152 --VIPMG 156
+P+G
Sbjct: 148 KDTLPLG 154
>pdb|3EO3|A Chain A, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
Of Human Gne Protein
pdb|3EO3|B Chain B, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
Of Human Gne Protein
pdb|3EO3|C Chain C, Crystal Structure Of The N-Acetylmannosamine Kinase Domain
Of Human Gne Protein
Length = 333
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHY 117
LA+DLGGTN RV ++ +K EIVK Y
Sbjct: 23 LAVDLGGTNLRVAIVSMK-----GEIVKKY 47
>pdb|2YHW|A Chain A, High-Resolution Crystal Structures Of N-Acetylmannosamine
Kinase: Insights About Substrate Specificity, Activity
And Inhibitor Modelling
Length = 343
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHY 117
LA+DLGGTN RV ++ +K EIVK Y
Sbjct: 33 LAVDLGGTNLRVAIVSMK-----GEIVKKY 57
>pdb|2YHY|A Chain A, Structure Of N-Acetylmannosamine Kinase In Complex With N-
Acetylmannosamine And Adp
pdb|2YI1|A Chain A, Crystal Structure Of N-Acetylmannosamine Kinase In Complex
With N-Acetyl Mannosamine 6-Phosphate And Adp
Length = 343
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHY 117
LA+DLGGTN RV ++ +K EIVK Y
Sbjct: 33 LAVDLGGTNLRVAIVSMK-----GEIVKKY 57
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 51 RSRVQRAA-RFILQGTLFSLGGTNLTNLS--------GEVLEQGQFLALDLGGTNFRVIL 101
++R +R ++L GT + NL +L+ GEVL G + D G R +
Sbjct: 145 KTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEGGEVL--GFLVPTDTPGFQAREVK 202
Query: 102 --MHLKKGLVTDEIVKHYHIPDELRLGSGLKL 131
M L+ + ++ +++ +P+ LRL L L
Sbjct: 203 RKMSLRASVTSELVLEEVRVPESLRLPKALGL 234
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 59 RFILQGTLFSLGGTNLTNLSGEVLEQGQFLALDLGGTNFRVILMHLKKGLV---TDEIVK 115
+ I+ + GG +TN E LE+G+FL N +I +LK ++ +DE+V+
Sbjct: 20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFL-------NDVIIDFYLKYLILEKASDELVE 72
Query: 116 HYHI 119
HI
Sbjct: 73 RSHI 76
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 78 SGEVLEQGQFLALDLGGTNFRVILMHLKKGLVT 110
+G+ ++ L DLGG F V L+H+ G+ T
Sbjct: 192 AGKSEKERHVLIFDLGGGTFDVSLLHIAGGVYT 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,374,086
Number of Sequences: 62578
Number of extensions: 166302
Number of successful extensions: 400
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 31
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)