Query psy15534
Match_columns 157
No_of_seqs 166 out of 644
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 23:47:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00349 Hexokinase_1: Hexokin 100.0 2.4E-34 5.2E-39 234.4 10.6 122 32-156 3-136 (206)
2 PLN02914 hexokinase 100.0 1.2E-32 2.6E-37 248.8 13.5 125 29-156 34-173 (490)
3 PLN02405 hexokinase 100.0 3.4E-32 7.3E-37 246.2 13.7 123 31-156 36-173 (497)
4 PLN02596 hexokinase-like 100.0 5.5E-32 1.2E-36 244.5 13.5 123 31-156 37-174 (490)
5 PLN02362 hexokinase 100.0 7.6E-32 1.6E-36 244.5 12.7 122 32-156 37-173 (509)
6 PTZ00107 hexokinase; Provision 100.0 6.3E-31 1.4E-35 236.3 12.7 120 34-156 9-157 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 1E-28 2.3E-33 219.9 11.8 128 26-156 11-149 (466)
8 KOG1369|consensus 100.0 2.4E-28 5.3E-33 219.8 13.0 125 29-156 24-159 (474)
9 PF00370 FGGY_N: FGGY family o 96.8 0.0078 1.7E-07 48.8 7.9 59 87-146 2-63 (245)
10 smart00732 YqgFc Likely ribonu 96.2 0.018 3.9E-07 40.1 6.0 49 86-142 2-50 (99)
11 PRK09698 D-allose kinase; Prov 96.1 0.031 6.6E-07 46.7 7.7 57 84-147 3-59 (302)
12 PRK13311 N-acetyl-D-glucosamin 96.0 0.029 6.3E-07 46.2 7.3 52 87-145 2-53 (256)
13 PRK12408 glucokinase; Provisio 95.6 0.02 4.3E-07 49.5 4.9 26 82-107 12-38 (336)
14 PTZ00288 glucokinase 1; Provis 95.6 0.046 1E-06 49.2 7.3 59 85-145 26-84 (405)
15 PRK13310 N-acetyl-D-glucosamin 95.4 0.069 1.5E-06 44.7 7.2 53 87-146 2-54 (303)
16 TIGR01315 5C_CHO_kinase FGGY-f 95.3 0.064 1.4E-06 49.1 7.5 60 87-147 2-64 (541)
17 PRK09557 fructokinase; Reviewe 95.3 0.078 1.7E-06 44.4 7.3 53 87-146 2-54 (301)
18 COG1940 NagC Transcriptional r 95.3 0.081 1.8E-06 44.4 7.4 58 83-146 4-61 (314)
19 PRK00292 glk glucokinase; Prov 95.3 0.037 8E-07 46.9 5.3 33 86-120 3-35 (316)
20 TIGR01314 gntK_FGGY gluconate 95.2 0.059 1.3E-06 48.6 6.9 60 87-147 2-64 (505)
21 PRK10939 autoinducer-2 (AI-2) 95.2 0.068 1.5E-06 48.5 7.2 61 86-147 4-69 (520)
22 COG1070 XylB Sugar (pentulose 95.2 0.076 1.6E-06 48.3 7.3 61 86-146 5-68 (502)
23 TIGR01311 glycerol_kin glycero 95.0 0.066 1.4E-06 48.2 6.5 60 87-147 3-65 (493)
24 TIGR00744 ROK_glcA_fam ROK fam 95.0 0.086 1.9E-06 44.2 6.8 53 88-148 1-53 (318)
25 PF00480 ROK: ROK family; Int 94.8 0.08 1.7E-06 40.5 5.6 51 89-147 1-51 (179)
26 PRK14101 bifunctional glucokin 94.6 0.04 8.6E-07 51.5 4.2 52 82-146 15-66 (638)
27 TIGR01234 L-ribulokinase L-rib 94.5 0.16 3.5E-06 46.3 7.7 60 87-147 3-77 (536)
28 PRK00047 glpK glycerol kinase; 94.5 0.12 2.5E-06 46.7 6.7 61 86-147 6-69 (498)
29 PRK05082 N-acetylmannosamine k 94.2 0.22 4.7E-06 41.5 7.2 52 87-144 3-54 (291)
30 PRK10331 L-fuculokinase; Provi 94.0 0.18 3.9E-06 45.1 6.9 60 86-146 3-67 (470)
31 PLN02295 glycerol kinase 93.9 0.26 5.6E-06 44.8 7.8 61 87-148 2-65 (512)
32 PRK15027 xylulokinase; Provisi 93.9 0.21 4.5E-06 44.9 7.1 60 86-146 1-63 (484)
33 TIGR01312 XylB D-xylulose kina 93.8 0.12 2.5E-06 45.9 5.3 60 88-148 1-63 (481)
34 PF02685 Glucokinase: Glucokin 93.6 0.14 3.1E-06 44.5 5.4 47 88-140 1-47 (316)
35 PRK04123 ribulokinase; Provisi 93.5 0.33 7.1E-06 44.3 7.7 61 86-147 4-74 (548)
36 PRK13321 pantothenate kinase; 93.4 0.26 5.6E-06 41.0 6.3 47 87-140 2-48 (256)
37 PTZ00294 glycerol kinase-like 93.2 0.37 8.1E-06 43.6 7.5 61 86-147 3-66 (504)
38 TIGR02628 fuculo_kin_coli L-fu 93.0 0.28 6.2E-06 43.9 6.4 58 87-145 3-65 (465)
39 TIGR02627 rhamnulo_kin rhamnul 92.9 0.29 6.2E-06 43.7 6.3 57 88-144 1-63 (454)
40 PRK13318 pantothenate kinase; 92.6 0.37 7.9E-06 40.1 6.2 17 87-103 2-18 (258)
41 TIGR00749 glk glucokinase, pro 91.7 0.33 7.1E-06 41.3 5.0 20 88-107 1-20 (316)
42 smart00842 FtsA Cell division 91.0 1.3 2.9E-05 34.8 7.4 59 87-146 1-59 (187)
43 TIGR01175 pilM type IV pilus a 89.9 2.6 5.7E-05 35.7 8.8 63 85-149 3-67 (348)
44 PF01869 BcrAD_BadFG: BadF/Bad 88.7 1.7 3.7E-05 35.8 6.6 58 88-149 1-58 (271)
45 TIGR01174 ftsA cell division p 84.3 5.7 0.00012 34.4 7.9 58 87-145 2-59 (371)
46 TIGR00241 CoA_E_activ CoA-subs 81.9 3.7 8E-05 33.7 5.5 48 87-147 2-49 (248)
47 COG0837 Glk Glucokinase [Carbo 80.8 2.8 6E-05 37.1 4.5 23 85-107 6-28 (320)
48 PRK09472 ftsA cell division pr 77.9 12 0.00026 33.3 7.8 59 86-145 9-67 (420)
49 PF11104 PilM_2: Type IV pilus 74.5 11 0.00024 32.3 6.5 61 89-149 1-61 (340)
50 PRK15080 ethanolamine utilizat 74.5 15 0.00032 30.8 7.1 58 82-144 21-78 (267)
51 PLN02669 xylulokinase 72.4 6.5 0.00014 36.5 4.8 60 84-144 7-82 (556)
52 PF11215 DUF3010: Protein of u 71.4 24 0.00052 27.8 7.1 59 87-149 3-63 (138)
53 KOG2517|consensus 69.3 24 0.00051 33.3 7.7 64 85-148 6-72 (516)
54 COG2971 Predicted N-acetylgluc 68.3 19 0.00041 31.7 6.5 60 86-149 6-65 (301)
55 COG3734 DgoK 2-keto-3-deoxy-ga 65.4 5.9 0.00013 34.9 2.8 23 84-106 4-26 (306)
56 PF00012 HSP70: Hsp70 protein; 63.9 29 0.00063 31.6 7.1 30 84-114 187-216 (602)
57 TIGR02707 butyr_kinase butyrat 62.6 26 0.00056 30.9 6.4 56 87-148 2-61 (351)
58 PF13011 LZ_Tnp_IS481: leucine 58.5 42 0.00092 24.2 5.8 57 14-73 3-63 (85)
59 PRK13324 pantothenate kinase; 57.5 42 0.00092 28.4 6.6 47 87-139 2-48 (258)
60 cd00529 RuvC_resolvase Hollida 56.5 89 0.0019 24.0 8.9 60 86-149 1-61 (154)
61 PF05402 PqqD: Coenzyme PQQ sy 54.7 20 0.00043 23.3 3.4 45 17-64 16-61 (68)
62 PF14574 DUF4445: Domain of un 54.3 17 0.00036 33.1 3.8 22 88-109 4-25 (412)
63 PF09907 DUF2136: Uncharacteri 52.3 18 0.00038 25.4 2.9 21 85-105 36-57 (76)
64 TIGR00671 baf pantothenate kin 51.5 65 0.0014 26.8 6.7 45 88-139 2-46 (243)
65 PRK13320 pantothenate kinase; 50.7 50 0.0011 27.5 5.9 17 87-103 4-20 (244)
66 COG0554 GlpK Glycerol kinase [ 49.7 34 0.00073 32.2 5.1 64 85-149 5-71 (499)
67 PRK00290 dnaK molecular chaper 49.6 64 0.0014 30.3 7.0 29 84-113 184-212 (627)
68 COG1069 AraB Ribulose kinase [ 47.7 61 0.0013 30.8 6.5 63 87-149 5-70 (544)
69 COG3894 Uncharacterized metal- 47.7 21 0.00047 33.9 3.5 39 83-121 162-201 (614)
70 TIGR03123 one_C_unchar_1 proba 47.2 17 0.00037 32.0 2.7 22 82-103 125-146 (318)
71 PRK13410 molecular chaperone D 46.1 86 0.0019 30.0 7.4 30 83-113 185-214 (668)
72 PTZ00186 heat shock 70 kDa pre 45.3 23 0.00049 33.9 3.4 29 75-103 15-45 (657)
73 PRK05183 hscA chaperone protei 43.5 19 0.00041 33.9 2.6 21 83-103 17-37 (616)
74 PF03753 HHV6-IE: Human herpes 41.3 37 0.00079 33.2 4.0 73 6-81 232-319 (993)
75 PTZ00009 heat shock 70 kDa pro 40.8 22 0.00047 33.7 2.5 19 85-103 4-22 (653)
76 PRK13410 molecular chaperone D 40.5 27 0.00058 33.4 3.1 19 85-103 2-20 (668)
77 PRK13411 molecular chaperone D 39.6 40 0.00086 32.0 4.0 29 84-113 185-213 (653)
78 TIGR03706 exo_poly_only exopol 39.5 1.7E+02 0.0037 24.7 7.6 59 87-145 2-64 (300)
79 PRK00290 dnaK molecular chaper 39.3 29 0.00063 32.5 3.1 19 85-103 2-20 (627)
80 PRK01433 hscA chaperone protei 39.2 39 0.00085 31.8 3.9 25 82-106 190-214 (595)
81 PF01968 Hydantoinase_A: Hydan 39.1 31 0.00068 29.3 3.0 20 84-103 76-95 (290)
82 PTZ00400 DnaK-type molecular c 38.8 22 0.00048 33.8 2.2 21 83-103 39-59 (663)
83 PF02075 RuvC: Crossover junct 38.7 1.8E+02 0.0039 22.3 8.7 60 87-149 1-60 (149)
84 PRK13411 molecular chaperone D 38.4 30 0.00066 32.8 3.1 19 85-103 2-20 (653)
85 PLN03184 chloroplast Hsp70; Pr 37.9 27 0.00058 33.4 2.6 19 85-103 39-57 (673)
86 PF00012 HSP70: Hsp70 protein; 37.3 34 0.00074 31.1 3.2 17 87-103 1-17 (602)
87 PRK05183 hscA chaperone protei 36.6 48 0.001 31.3 4.1 25 83-107 199-223 (616)
88 COG4972 PilM Tfp pilus assembl 35.9 1.5E+02 0.0032 26.8 6.8 63 86-149 11-74 (354)
89 CHL00094 dnaK heat shock prote 34.8 2.5E+02 0.0053 26.5 8.4 30 83-113 185-214 (621)
90 PRK13929 rod-share determining 34.1 35 0.00077 29.3 2.6 15 86-100 5-19 (335)
91 TIGR02350 prok_dnaK chaperone 33.5 39 0.00086 31.3 3.0 17 87-103 2-18 (595)
92 PTZ00009 heat shock 70 kDa pro 33.3 57 0.0012 31.0 4.0 28 84-112 193-220 (653)
93 TIGR02350 prok_dnaK chaperone 33.1 59 0.0013 30.2 4.0 28 84-112 182-209 (595)
94 PF05378 Hydant_A_N: Hydantoin 32.8 1.7E+02 0.0037 23.1 6.1 50 88-147 2-51 (176)
95 PF14450 FtsA: Cell division p 32.8 47 0.001 24.3 2.8 26 87-112 1-26 (120)
96 TIGR01991 HscA Fe-S protein as 32.8 58 0.0013 30.6 3.9 24 83-106 179-202 (599)
97 PLN03184 chloroplast Hsp70; Pr 32.6 2.4E+02 0.0053 27.0 8.1 30 83-113 222-251 (673)
98 CHL00094 dnaK heat shock prote 32.5 43 0.00092 31.5 3.0 19 85-103 2-20 (621)
99 PRK11678 putative chaperone; P 32.4 61 0.0013 29.5 3.9 25 83-107 207-231 (450)
100 COG2859 Uncharacterized protei 31.3 1.1E+02 0.0023 26.2 4.9 64 93-156 33-99 (237)
101 PRK13326 pantothenate kinase; 30.9 1.7E+02 0.0036 24.8 6.1 44 86-136 7-50 (262)
102 PTZ00186 heat shock 70 kDa pre 29.8 72 0.0016 30.6 4.1 29 84-113 211-239 (657)
103 COG0849 ftsA Cell division ATP 29.6 2.9E+02 0.0063 25.3 7.8 60 86-146 7-66 (418)
104 TIGR00555 panK_eukar pantothen 29.6 1.8E+02 0.0038 25.1 6.1 17 87-103 2-18 (279)
105 TIGR00904 mreB cell shape dete 29.1 40 0.00087 28.6 2.1 15 87-101 4-18 (333)
106 cd00897 UGPase_euk Eukaryotic 28.6 79 0.0017 27.5 3.8 47 98-147 3-50 (300)
107 TIGR01991 HscA Fe-S protein as 28.4 36 0.00078 31.9 1.8 17 87-103 1-17 (599)
108 PF04848 Pox_A22: Poxvirus A22 28.0 1.1E+02 0.0024 24.0 4.2 22 87-108 3-24 (143)
109 PRK13928 rod shape-determining 27.5 47 0.001 28.3 2.2 14 88-101 6-19 (336)
110 PF06723 MreB_Mbl: MreB/Mbl pr 26.5 59 0.0013 28.5 2.7 15 86-100 2-16 (326)
111 PF13941 MutL: MutL protein 26.0 50 0.0011 30.6 2.2 41 51-94 201-257 (457)
112 PRK00039 ruvC Holliday junctio 25.8 3.3E+02 0.0071 21.4 8.6 60 86-149 3-63 (164)
113 PF06406 StbA: StbA protein; 25.4 79 0.0017 27.0 3.3 22 82-103 161-182 (318)
114 PRK11031 guanosine pentaphosph 25.4 3.6E+02 0.0078 24.8 7.7 59 86-145 7-70 (496)
115 PRK13927 rod shape-determining 25.3 63 0.0014 27.3 2.6 16 86-101 6-21 (334)
116 COG0443 DnaK Molecular chapero 24.8 3.4E+02 0.0074 25.6 7.5 24 82-105 169-192 (579)
117 TIGR03286 methan_mark_15 putat 24.6 1.4E+02 0.0031 27.3 4.8 22 82-103 141-162 (404)
118 TIGR00316 cdhC CO dehydrogenas 24.4 83 0.0018 29.3 3.3 29 119-147 352-392 (458)
119 PRK10854 exopolyphosphatase; P 23.9 4.5E+02 0.0098 24.2 8.1 58 87-145 13-75 (513)
120 PF06293 Kdo: Lipopolysacchari 23.2 1.8E+02 0.0039 22.9 4.7 49 45-97 115-170 (206)
121 PF00717 Peptidase_S24: Peptid 22.8 2.1E+02 0.0045 18.1 4.9 38 75-112 6-56 (70)
122 PTZ00400 DnaK-type molecular c 22.7 1.1E+02 0.0024 29.2 3.9 22 85-106 226-247 (663)
123 PRK04456 acetyl-CoA decarbonyl 22.1 96 0.0021 29.0 3.2 29 119-147 355-395 (463)
124 PF03309 Pan_kinase: Type III 21.6 1.1E+02 0.0023 24.5 3.2 17 87-103 1-17 (206)
125 PF07878 DUF1662: Protein of u 21.6 1E+02 0.0022 20.5 2.5 42 19-63 4-46 (55)
126 COG5146 PanK Pantothenate kina 21.5 1.7E+02 0.0036 25.9 4.4 49 87-144 20-68 (342)
127 TIGR02148 Fibro_Slime fibro-sl 21.0 54 0.0012 24.0 1.2 18 87-104 37-55 (90)
128 TIGR00904 mreB cell shape dete 20.8 1.3E+02 0.0029 25.4 3.8 21 86-106 151-171 (333)
129 PRK11678 putative chaperone; P 20.2 74 0.0016 29.0 2.1 17 87-103 2-18 (450)
130 TIGR01319 glmL_fam conserved h 20.1 81 0.0018 29.4 2.4 39 59-97 202-261 (463)
No 1
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=2.4e-34 Score=234.43 Aligned_cols=122 Identities=37% Similarity=0.580 Sum_probs=109.8
Q ss_pred HHHHHHHhhcccccCHHHHHHHHHHHHHHHHhh-ccccCCCCC---CCcccccc------cccccEEEEecCCceeEEEE
Q psy15534 32 VCQQQTALETRSSVSGEARRSRVQRAARFILQG-TLFSLGGTN---LTNLSGEV------LEQGQFLALDLGGTNFRVIL 101 (157)
Q Consensus 32 ~~~~~~~le~~F~v~~~~L~~iv~~~~~f~~em-~gL~~~~s~---l~MlPT~V------~E~G~fLALDLGGTNlRV~~ 101 (157)
+.|++.++.++|.++.++|+++++ +|..|| .||++++++ ++|||||| .|+|+|||||+|||||||++
T Consensus 3 ~~~~v~~~~~~f~~s~~~L~~i~~---~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~ 79 (206)
T PF00349_consen 3 LQQAVQKLLQQFTLSDEQLQEISD---RFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVAL 79 (206)
T ss_dssp HHHHHHHHHGGGS--HHHHHHHHH---HHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHH---HHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEE
Confidence 468899999999999999999999 999999 999988877 99999999 89999999999999999999
Q ss_pred EEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCC--CCCCCCCC
Q psy15534 102 MHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQV--HDRVIPMG 156 (157)
Q Consensus 102 V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~--~~~~LPLG 156 (157)
|+|.|++.+.+.+++|+||++++.+++++||||||+||++|+++++. ..+++|||
T Consensus 80 V~L~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lG 136 (206)
T PF00349_consen 80 VELSGNGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLG 136 (206)
T ss_dssp EEEESSSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEE
T ss_pred EEEcCCCCceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhcccccccccceE
Confidence 99999999999999999999999999999999999999999999987 45667776
No 2
>PLN02914 hexokinase
Probab=100.00 E-value=1.2e-32 Score=248.79 Aligned_cols=125 Identities=30% Similarity=0.417 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHhh-ccccCC-CCCCCcccccc------cccccEEEEecCCceeEEE
Q psy15534 29 SAAVCQQQTALETRSSVSGEARRSRVQRAARFILQG-TLFSLG-GTNLTNLSGEV------LEQGQFLALDLGGTNFRVI 100 (157)
Q Consensus 29 ~~~~~~~~~~le~~F~v~~~~L~~iv~~~~~f~~em-~gL~~~-~s~l~MlPT~V------~E~G~fLALDLGGTNlRV~ 100 (157)
+..+.+.+++++++|.++.++|+++++ +|..|| +||+++ +++++|||||| +|+|+||||||||||||||
T Consensus 34 ~~~~~~~~~~~~~~f~~~~~~L~~i~~---~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~ 110 (490)
T PLN02914 34 AVSVAPILTKLQKDCATPLPVLRHVAD---AMAADMRAGLAVDGGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVL 110 (490)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHHHhccCCCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEE
Confidence 346788999999999999999999999 999999 999975 68899999999 7999999999999999999
Q ss_pred EEEEeCCc--eEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC-----CCCCCCC
Q psy15534 101 LMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH-----DRVIPMG 156 (157)
Q Consensus 101 ~V~L~G~~--~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~-----~~~LPLG 156 (157)
+|+|.|++ .+++.+++|+||++++.+++++||||||+||++|+++++.. ++++|||
T Consensus 111 ~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LG 173 (490)
T PLN02914 111 RVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIG 173 (490)
T ss_pred EEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccce
Confidence 99999965 57788999999999999999999999999999999998632 3578887
No 3
>PLN02405 hexokinase
Probab=99.98 E-value=3.4e-32 Score=246.23 Aligned_cols=123 Identities=30% Similarity=0.381 Sum_probs=112.8
Q ss_pred HHHHHHHHhhcccccCHHHHHHHHHHHHHHHHhh-ccccCC-CCCCCcccccc------cccccEEEEecCCceeEEEEE
Q psy15534 31 AVCQQQTALETRSSVSGEARRSRVQRAARFILQG-TLFSLG-GTNLTNLSGEV------LEQGQFLALDLGGTNFRVILM 102 (157)
Q Consensus 31 ~~~~~~~~le~~F~v~~~~L~~iv~~~~~f~~em-~gL~~~-~s~l~MlPT~V------~E~G~fLALDLGGTNlRV~~V 102 (157)
.+.+.++++++.|.++.++|+++++ +|..|| .||+.+ +++++|||||| +|+|+||||||||||||||+|
T Consensus 36 ~~~~~l~~~~~~f~~~~~~L~~v~~---~f~~em~~GL~~~~~s~l~MlpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V 112 (497)
T PLN02405 36 RAMEILKEFEEDCATPIGKLRQVAD---AMTVEMHAGLASEGGSKLKMLISYVDNLPSGDEKGLFYALDLGGTNFRVLRV 112 (497)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHHhhccCCCCCcceeccccccCCCCCcceeEEEEecCCceEEEEEE
Confidence 4677899999999999999999999 999999 999975 68899999999 899999999999999999999
Q ss_pred EEeCCc--eEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC-----CCCCCCC
Q psy15534 103 HLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH-----DRVIPMG 156 (157)
Q Consensus 103 ~L~G~~--~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~-----~~~LPLG 156 (157)
+|.|++ ..+..+++|+||+++|.+++++||||||+||++|+++++.+ ++++|||
T Consensus 113 ~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~~~~~~~~~~l~LG 173 (497)
T PLN02405 113 LLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGEDFHLPPGRQRELG 173 (497)
T ss_pred EEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhcccccccCcccccccc
Confidence 999965 56778899999999999999999999999999999998643 2568887
No 4
>PLN02596 hexokinase-like
Probab=99.97 E-value=5.5e-32 Score=244.49 Aligned_cols=123 Identities=21% Similarity=0.298 Sum_probs=112.1
Q ss_pred HHHHHHHHhhcccccCHHHHHHHHHHHHHHHHhh-ccccC-CCCCCCcccccc------cccccEEEEecCCceeEEEEE
Q psy15534 31 AVCQQQTALETRSSVSGEARRSRVQRAARFILQG-TLFSL-GGTNLTNLSGEV------LEQGQFLALDLGGTNFRVILM 102 (157)
Q Consensus 31 ~~~~~~~~le~~F~v~~~~L~~iv~~~~~f~~em-~gL~~-~~s~l~MlPT~V------~E~G~fLALDLGGTNlRV~~V 102 (157)
.+.+.+++++++|.++.++|+++++ +|.+|| +||+. .+++++|+|||| +|+|+|||||+||||||||+|
T Consensus 37 ~~~~~l~~~~~~f~~~~~~L~~i~~---~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V 113 (490)
T PLN02596 37 HTQRILRKFARECATPVSKLWEVAD---ALVSDMTASLTAEETTTLNMLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRA 113 (490)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHHhhccCCCCCCceecccCCCCCCCCcceEEEEEeeCCceEEEEEE
Confidence 4566788999999999999999999 999999 79987 667899999999 799999999999999999999
Q ss_pred EEeCCc--eEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCCC-----CCCCCC
Q psy15534 103 HLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHD-----RVIPMG 156 (157)
Q Consensus 103 ~L~G~~--~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~~-----~~LPLG 156 (157)
+|.|++ ..++.+++|+||++++.+++++||||||+||++|+++++... +++|||
T Consensus 114 ~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~lG 174 (490)
T PLN02596 114 RLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHPGDEADTPERVKKLG 174 (490)
T ss_pred EEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhccccccCcccccccc
Confidence 999984 478889999999999999999999999999999999986542 469988
No 5
>PLN02362 hexokinase
Probab=99.97 E-value=7.6e-32 Score=244.51 Aligned_cols=122 Identities=30% Similarity=0.347 Sum_probs=111.3
Q ss_pred HHHHHHHhhcccccCHHHHHHHHHHHHHHHHhh-ccccCC-CCCCCcccccc------cccccEEEEecCCceeEEEEEE
Q psy15534 32 VCQQQTALETRSSVSGEARRSRVQRAARFILQG-TLFSLG-GTNLTNLSGEV------LEQGQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 32 ~~~~~~~le~~F~v~~~~L~~iv~~~~~f~~em-~gL~~~-~s~l~MlPT~V------~E~G~fLALDLGGTNlRV~~V~ 103 (157)
+.+.++++++.|.++.++|+++++ +|..|| .||+.+ +++++|||||| +|+|+||||||||||||||+|+
T Consensus 37 ~~~~l~~~~~~f~~~~~~L~~v~~---~f~~em~~GL~~~~~s~l~MlPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 37 VVGVLKELEEACETPVGRLRQVVD---AMAVEMHAGLASEGGSKLKMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQ 113 (509)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHHhhccCCCCCCceecCccCCCCCCCcceeEEEEecCCceEEEEEEE
Confidence 567799999999999999999999 999999 999875 78899999999 7999999999999999999999
Q ss_pred EeCCceEEE--EEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC-----CCCCCCC
Q psy15534 104 LKKGLVTDE--IVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH-----DRVIPMG 156 (157)
Q Consensus 104 L~G~~~~~~--~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~-----~~~LPLG 156 (157)
|.|++.+.+ .+++|+||+++|.+++++||||||+||++|+++++.. .+++|||
T Consensus 114 L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~LG 173 (509)
T PLN02362 114 LGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEENGSEFSQVRRRELG 173 (509)
T ss_pred ecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCccccccccccccce
Confidence 999877666 4479999999999999999999999999999998754 2568887
No 6
>PTZ00107 hexokinase; Provisional
Probab=99.97 E-value=6.3e-31 Score=236.27 Aligned_cols=120 Identities=25% Similarity=0.439 Sum_probs=111.1
Q ss_pred HHHHHhhcccccCHHHHHHHHHHHHHHHHhh-ccccCC----------CCCCCcccccc------cccccEEEEecCCce
Q psy15534 34 QQQTALETRSSVSGEARRSRVQRAARFILQG-TLFSLG----------GTNLTNLSGEV------LEQGQFLALDLGGTN 96 (157)
Q Consensus 34 ~~~~~le~~F~v~~~~L~~iv~~~~~f~~em-~gL~~~----------~s~l~MlPT~V------~E~G~fLALDLGGTN 96 (157)
+.+++++++|.++.++|+++++ +|..|| .||+++ +++++|||||| +|+|+|||||+||||
T Consensus 9 ~~~~~~~~~f~~~~~~L~~i~~---~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN 85 (464)
T PTZ00107 9 VRLASLVNQFTMSKEKLKELVD---YFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTN 85 (464)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCce
Confidence 4678899999999999999999 999999 999976 78899999999 799999999999999
Q ss_pred eEEEEEEEeCCceEEEEEEEeecCcccccc---------cchHHHHHHHHHHHHHHHHcC-CC--CCCCCCC
Q psy15534 97 FRVILMHLKKGLVTDEIVKHYHIPDELRLG---------SGLKLFDFLAACISDFVHEYQ-VH--DRVIPMG 156 (157)
Q Consensus 97 lRV~~V~L~G~~~~~~~q~k~~iP~~l~~g---------t~eeLFdfIA~~I~~fl~~~~-~~--~~~LPLG 156 (157)
||||+|+|.|++.+.+.+++|+||++++.+ ++++||||||+||++|+++++ .. .+++|||
T Consensus 86 ~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~~~~~~l~lG 157 (464)
T PTZ00107 86 FRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPEDLNKPVPVG 157 (464)
T ss_pred EEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccccccccccce
Confidence 999999999999999999999999999988 999999999999999999987 22 2568887
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1e-28 Score=219.89 Aligned_cols=128 Identities=31% Similarity=0.352 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHhh-ccccCCCCC-CCcccccc------cccccEEEEecCCcee
Q psy15534 26 LILSAAVCQQQTALETRSSVSGEARRSRVQRAARFILQG-TLFSLGGTN-LTNLSGEV------LEQGQFLALDLGGTNF 97 (157)
Q Consensus 26 ~~~~~~~~~~~~~le~~F~v~~~~L~~iv~~~~~f~~em-~gL~~~~s~-l~MlPT~V------~E~G~fLALDLGGTNl 97 (157)
+.+++|+.|++.++++.|.++.++|.+++. +|.+|| +||..++++ ++|||+|| +|.|+|||||+|||||
T Consensus 11 ~~~~~~l~~~~~~~~~~~~~p~e~l~~v~~---~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnl 87 (466)
T COG5026 11 LGVEAALEQAVEELVESFTVPTEDLREVVK---AFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNL 87 (466)
T ss_pred ccccHHHHHHHHHHhhcccCCHHHHHHHHH---HHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceE
Confidence 348999999999999999999999999999 999999 999966566 99999999 7999999999999999
Q ss_pred EEEEEEEeCCceEEEEEEEeecCcccccc-cchHHHHHHHHHHHHHHHHcCCC--CCCCCCC
Q psy15534 98 RVILMHLKKGLVTDEIVKHYHIPDELRLG-SGLKLFDFLAACISDFVHEYQVH--DRVIPMG 156 (157)
Q Consensus 98 RV~~V~L~G~~~~~~~q~k~~iP~~l~~g-t~eeLFdfIA~~I~~fl~~~~~~--~~~LPLG 156 (157)
|||.|+|.|++++++.+.++.+|.+.+.. +.++||+|||++++.|+++++++ +.++|+|
T Consensus 88 Rvc~V~l~g~gt~~~~~sks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~~~~~l~~g 149 (466)
T COG5026 88 RVCLVVLGGDGTFDIEQSKSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSGYGSKLPIG 149 (466)
T ss_pred EEEEEEeCCCCCcccccCcccCchhhccCCChHHHHHHHHHHHHHHHHHhCchhccCcceee
Confidence 99999999999999999999999999988 89999999999999999999886 4677776
No 8
>KOG1369|consensus
Probab=99.95 E-value=2.4e-28 Score=219.80 Aligned_cols=125 Identities=37% Similarity=0.565 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHhh-ccccCCCC-C-CCcccccc------cccccEEEEecCCceeEE
Q psy15534 29 SAAVCQQQTALETRSSVSGEARRSRVQRAARFILQG-TLFSLGGT-N-LTNLSGEV------LEQGQFLALDLGGTNFRV 99 (157)
Q Consensus 29 ~~~~~~~~~~le~~F~v~~~~L~~iv~~~~~f~~em-~gL~~~~s-~-l~MlPT~V------~E~G~fLALDLGGTNlRV 99 (157)
++++.+++++++..|.++.++|+++++ +|.++| +||....+ + ++|+|||| +|+|.|||||||||||||
T Consensus 24 ~~~~~~~l~~~~~~f~l~~~~L~~v~~---~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~Rv 100 (474)
T KOG1369|consen 24 LAAVSRQLEELLALFQLPDEQLREVVD---AFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGGTNFRV 100 (474)
T ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHH---HHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCCCceEE
Confidence 678999999999999999999999999 999999 99884433 3 99999999 899999999999999999
Q ss_pred EEEEEeCCc-eEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCCCCC-CCCC
Q psy15534 100 ILMHLKKGL-VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVHDRV-IPMG 156 (157)
Q Consensus 100 ~~V~L~G~~-~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~~~~-LPLG 156 (157)
++|+|.|++ ...+..++|+||.+++.+++++||||||+|+++|++++++.+.+ +|||
T Consensus 101 ~~v~L~g~~~~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~~~~l~lg 159 (474)
T KOG1369|consen 101 LLVKLGGGRTSVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKGASKLPLG 159 (474)
T ss_pred EEEEecCCcccceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999999998 45556679999999999999999999999999999999987666 9987
No 9
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=96.76 E-value=0.0078 Score=48.82 Aligned_cols=59 Identities=12% Similarity=0.349 Sum_probs=42.3
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeec--C-cccccccchHHHHHHHHHHHHHHHHc
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--P-DELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i--P-~~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
||+||+|.||.|+++++-.|+ .....+..++. | +....-+.+++|+.+.+++++.+++.
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~-iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGK-IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSC-EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcccceEEEEEeCCCC-EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 799999999999999993333 33334444433 2 12234489999999999999999876
No 10
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=96.20 E-value=0.018 Score=40.13 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=30.2
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHH
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~f 142 (157)
++|+||+|||+++++.++-.|.-.... +.+.+. +.+++++.+.+.+.++
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~~~~~---~~~~~~-----~~~~~~~~l~~~i~~~ 50 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLADPL---EVIPRT-----NKEADAARLKKLIKKY 50 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCEecCE---EEEEec-----CcchHHHHHHHHHHHh
Confidence 589999999999999987544321111 111111 3456777777666553
No 11
>PRK09698 D-allose kinase; Provisional
Probab=96.05 E-value=0.031 Score=46.71 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=42.2
Q ss_pred cccEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcC
Q psy15534 84 QGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
.+.++++|+|||++|++.+.+.|+- +.+.+++.|.. .+.+ .++.+++.|.+++++.+
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~i---~~~~~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~ 59 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGEI---LHCEKKRTAEV---IAPD-LVSGLGEMIDEYLRRFN 59 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCCE---EEEEEeCCccc---cchH-HHHHHHHHHHHHHHHcC
Confidence 5679999999999999999997752 23445555543 2333 48999999999988753
No 12
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.03 E-value=0.029 Score=46.20 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=39.6
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHH
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 145 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~ 145 (157)
|+++|+|||++|++.+++.|+-. .+++++.|. .+.+++.+.+.+.+.++...
T Consensus 2 ~lgidiggt~i~~~l~d~~g~i~---~~~~~~~~~----~~~~~~~~~i~~~i~~~~~~ 53 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQRI---WHKRVPTPR----EDYPQLLQILRDLTEEADTY 53 (256)
T ss_pred EEEEEECCCcEEEEEECCCCCEE---EEEEecCCC----cCHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999977522 344555553 24678999999888887653
No 13
>PRK12408 glucokinase; Provisional
Probab=95.59 E-value=0.02 Score=49.51 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=21.8
Q ss_pred ccccc-EEEEecCCceeEEEEEEEeCC
Q psy15534 82 LEQGQ-FLALDLGGTNFRVILMHLKKG 107 (157)
Q Consensus 82 ~E~G~-fLALDLGGTNlRV~~V~L~G~ 107 (157)
-|++. ||++|+||||.|+++|+-.|.
T Consensus 12 ~~~~~~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 12 VPRPESFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred CcccccEEEEEcChhhhheeEEeccCC
Confidence 56666 999999999999999975554
No 14
>PTZ00288 glucokinase 1; Provisional
Probab=95.58 E-value=0.046 Score=49.21 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=39.6
Q ss_pred ccEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHH
Q psy15534 85 GQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 145 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~ 145 (157)
+.+++.|+||||.|+++.++...+.-.....+.+.| ++..+..++.+++++-+....+.
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 84 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFN--VTKTDIRELLEFFDEVLQKLKKN 84 (405)
T ss_pred CeEEEEEecCCceEEEEEeccCCCCCceeEEEEecc--cccccHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999984332222333333444 23346778888888877776664
No 15
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=95.36 E-value=0.069 Score=44.72 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=40.1
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHc
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
++++|+|||++|++.+++.|+- +.+.+++.|. .+.+++.+.|++.+.++....
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i---~~~~~~~~~~----~~~~~~~~~i~~~i~~~~~~~ 54 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLEL---QWEERVPTPR----DSYDAFLDAVCELVAEADQRF 54 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcE---EEEEEecCCC----cCHHHHHHHHHHHHHHHHhhc
Confidence 7899999999999999997742 2333455553 257888999999888887653
No 16
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.33 E-value=0.064 Score=49.13 Aligned_cols=60 Identities=13% Similarity=0.365 Sum_probs=43.2
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeec--Cc-ccccccchHHHHHHHHHHHHHHHHcC
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PD-ELRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i--P~-~l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
||+||+|+|+.|++.+...|+-. ...+..|+. |. ...+-+.+++|+-+.+++++.+++.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~i~-~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~ 64 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGDIL-ALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESK 64 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCCEE-EEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999998766432 222333332 32 22344788999999999999998754
No 17
>PRK09557 fructokinase; Reviewed
Probab=95.29 E-value=0.078 Score=44.43 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=39.5
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHc
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
++++|+|||++|++.+++.|+- +.+.+++.|. .+.+++.+.|++.+.++....
T Consensus 2 ~lgidig~t~~~~~l~d~~g~i---~~~~~~~~~~----~~~~~~~~~i~~~i~~~~~~~ 54 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGEE---LFRKRLPTPR----DDYQQTIEAIATLVDMAEQAT 54 (301)
T ss_pred EEEEEECCCcEEEEEECCCCCE---EEEEEecCCC----CCHHHHHHHHHHHHHHHHhhc
Confidence 7899999999999999997752 2334455552 256788888888888887643
No 18
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=95.27 E-value=0.081 Score=44.41 Aligned_cols=58 Identities=19% Similarity=0.364 Sum_probs=43.6
Q ss_pred ccccEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHc
Q psy15534 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
+...+++||+|||+++++++++.|+- +.....+.|.... .+++.+-|++.++++++.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~---l~~~~~~~~~~~~---~~~~~~~i~~~i~~~~~~~ 61 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEI---LLRERIPTPTPDP---EEAILEAILALVAELLKQA 61 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcE---EEEEEEecCCCCc---hhHHHHHHHHHHHHHHHhc
Confidence 45679999999999999999998762 2344455555332 2688888889899888876
No 19
>PRK00292 glk glucokinase; Provisional
Probab=95.26 E-value=0.037 Score=46.86 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=23.6
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeecC
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP 120 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP 120 (157)
.+|++|+||||+|++++++.+... ....+++.+
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~~~--~~~~~~~~~ 35 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANGEI--EQIKTYATA 35 (316)
T ss_pred eEEEEEcCccceEEEEEecCCCce--eeeEEEecC
Confidence 379999999999999998755421 334455544
No 20
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.24 E-value=0.059 Score=48.64 Aligned_cols=60 Identities=15% Similarity=0.305 Sum_probs=41.9
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEee--cCc-ccccccchHHHHHHHHHHHHHHHHcC
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYH--IPD-ELRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~--iP~-~l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
+|+||+|+|+.|++.+...|+-. ...+..|+ .|. .-..-+.+++|+-+.+++++.+++..
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g~i~-~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~ 64 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENGKIV-AKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLE 64 (505)
T ss_pred EEEEeccccceEEEEEcCCCCEE-EEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCC
Confidence 68999999999999998655422 22233333 222 12334788999999999999998653
No 21
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.22 E-value=0.068 Score=48.51 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=43.9
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeecC-----cccccccchHHHHHHHHHHHHHHHHcC
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP-----DELRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP-----~~l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
-+|+||+|.|+.|++.++..|+ .....+..|+.+ +.-..-+.+++|+-+.+++++.+++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~-~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN-QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAG 69 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC-EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcC
Confidence 3899999999999999997664 333334444422 122234788999999999999997754
No 22
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.16 E-value=0.076 Score=48.27 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=45.1
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeecC--c-ccccccchHHHHHHHHHHHHHHHHc
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP--D-ELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP--~-~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
-||+||+|.||.|+..++..|..........+... . .-..-+.+++|..+.++|++.+++.
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999998633333333333332 1 1224479999999999999999985
No 23
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.04 E-value=0.066 Score=48.22 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=42.6
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeec--Ccc-cccccchHHHHHHHHHHHHHHHHcC
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PDE-LRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i--P~~-l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
+|+||+|+||.|++.++..|+- ....+..++. |.. ...-+.+++|+.+.+++++.+++.+
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g~~-l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDGNI-VAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred EEEEecCCCceEEEEECCCCCE-EEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999999866642 2233333332 221 1123688999999999999998764
No 24
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=95.02 E-value=0.086 Score=44.16 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=40.5
Q ss_pred EEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCC
Q psy15534 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQV 148 (157)
Q Consensus 88 LALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~ 148 (157)
+++|+|||++|++.+++.|+- +.+.+++.+ .+.+++++.|.+.|.+++++.+.
T Consensus 1 lgidig~t~~~~~l~d~~g~i---~~~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~ 53 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNI---LSKWKVPTD-----TTPETIVDAIASAVDSFIQHIAK 53 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCE---EEEEEeCCC-----CCHHHHHHHHHHHHHHHHHhcCC
Confidence 579999999999999997752 223344443 15788999999999999987653
No 25
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=94.78 E-value=0.08 Score=40.53 Aligned_cols=51 Identities=29% Similarity=0.537 Sum_probs=41.9
Q ss_pred EEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcC
Q psy15534 89 ALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 89 ALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
+||+|+|++|++.+.+.|+-. .++++++| .+.+++.+.+.+.+.+++.+..
T Consensus 1 gidig~~~i~~~l~d~~g~ii---~~~~~~~~-----~~~~~~~~~l~~~i~~~~~~~~ 51 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEII---YSESIPTP-----TSPEELLDALAELIERLLADYG 51 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEE---EEEEEEHH-----SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEECCCEEEEEEECCCCCEE---EEEEEECC-----CCHHHHHHHHHHHHHHHHhhcc
Confidence 589999999999999988532 44566676 4789999999999999998864
No 26
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=94.63 E-value=0.04 Score=51.50 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=32.7
Q ss_pred cccccEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHc
Q psy15534 82 LEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 82 ~E~G~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
..-|-+|++|+||||.|++++. .++.. ....+++-+. |+.+.+.|.+++++.
T Consensus 15 ~~~~~~L~iDIGGT~ir~al~~--~~g~i-~~~~~~~t~~----------~~~~~~~i~~~l~~~ 66 (638)
T PRK14101 15 HADGPRLLADVGGTNARFALET--GPGEI-TQIRVYPGAD----------YPTLTDAIRKYLKDV 66 (638)
T ss_pred CCCCCEEEEEcCchhheeeeec--CCCcc-cceeEEecCC----------CCCHHHHHHHHHHhc
Confidence 3457799999999999999984 33322 2223443322 344556677777654
No 27
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=94.49 E-value=0.16 Score=46.33 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=44.9
Q ss_pred EEEEecCCceeEEEEEE-EeCCceEEEEEEEee-------cC-------cccccccchHHHHHHHHHHHHHHHHcC
Q psy15534 87 FLALDLGGTNFRVILMH-LKKGLVTDEIVKHYH-------IP-------DELRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~-L~G~~~~~~~q~k~~-------iP-------~~l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
+|+||+|.|+.|++.+. ..|+- ....+..|+ .| ....+-+.+++|.-+.+++++.+++.+
T Consensus 3 ~lgiD~GTss~Ka~l~d~~~G~~-~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVDVATGEE-IATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred EEEEecCCCceEEEEEECCCCcE-eeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999 77753 233444454 23 233445799999999999999998754
No 28
>PRK00047 glpK glycerol kinase; Provisional
Probab=94.49 E-value=0.12 Score=46.67 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=43.6
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeec--Ccc-cccccchHHHHHHHHHHHHHHHHcC
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PDE-LRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i--P~~-l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
.+|+||+|+|+.|++.++..|+- ....+..|++ |.. ...-+.+++|+-+.+++++.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~~-~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGNI-VSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCCE-EEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 37999999999999999876643 2223344432 321 1133788999999999999997754
No 29
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=94.15 E-value=0.22 Score=41.46 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=39.3
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHH
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVH 144 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~ 144 (157)
++++|+|||++|++.+++.|+- +...+++.|.. .+.+++.+.|++.+.++..
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i---~~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~ 54 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQI---RQRRQIPTPAS---QTPEALRQALSALVSPLQA 54 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcE---EEEEEecCCCC---CCHHHHHHHHHHHHHHhhh
Confidence 7999999999999999998752 23444555542 3567789999998888764
No 30
>PRK10331 L-fuculokinase; Provisional
Probab=94.03 E-value=0.18 Score=45.15 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=41.7
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeec----Cc-ccccccchHHHHHHHHHHHHHHHHc
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI----PD-ELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i----P~-~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
.+|+||+|.||.|++.+...|+- ....+..++. |. ....-+.+++|+-+.+++++.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~~-~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGKI-VARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCcE-EEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999999977743 2223333321 11 1223378889999999999998763
No 31
>PLN02295 glycerol kinase
Probab=93.93 E-value=0.26 Score=44.75 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=44.3
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeec--Cc-ccccccchHHHHHHHHHHHHHHHHcCC
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PD-ELRLGSGLKLFDFLAACISDFVHEYQV 148 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i--P~-~l~~gt~eeLFdfIA~~I~~fl~~~~~ 148 (157)
+|+||+|.|+.|++.++..|+- ....+..|++ |+ ...+-+.+++|+-+.++|++.+++.+.
T Consensus 2 vlgID~GTts~Ka~l~d~~G~~-~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~ 65 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDARP-VASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAA 65 (512)
T ss_pred EEEEecCCCceEEEEECCCCCE-EEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999876653 2233444442 32 223447899999999999999987643
No 32
>PRK15027 xylulokinase; Provisional
Probab=93.92 E-value=0.21 Score=44.93 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=43.6
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeec--C-cccccccchHHHHHHHHHHHHHHHHc
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--P-DELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i--P-~~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
.||+||+|.|+.|++.++..|+ .....+..|++ | +....-+.+++|+.+..++++.+++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~-vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGE-VVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred CEEEEEecccceEEEEEcCCCC-EEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 3899999999999999986654 22334445543 2 22334478899999999999999764
No 33
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=93.85 E-value=0.12 Score=45.86 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=42.1
Q ss_pred EEEecCCceeEEEEEEEeCCceEEEEEEEeec---CcccccccchHHHHHHHHHHHHHHHHcCC
Q psy15534 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHI---PDELRLGSGLKLFDFLAACISDFVHEYQV 148 (157)
Q Consensus 88 LALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i---P~~l~~gt~eeLFdfIA~~I~~fl~~~~~ 148 (157)
++||+|.|++|++.+++.|+-. ...+..++. ++....-+.+++++-+.+++++++++.+.
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~-~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~ 63 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVI-ASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASE 63 (481)
T ss_pred CceeecCcceEEEEECCCCCEE-EEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCC
Confidence 5799999999999999877532 112222221 12222346889999999999999988654
No 34
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=93.64 E-value=0.14 Score=44.48 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=30.1
Q ss_pred EEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHH
Q psy15534 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140 (157)
Q Consensus 88 LALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~ 140 (157)
|+-|+||||.|+++++..+........++|+-.+ -..|-+.+++.++
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~~~------~~s~~~~l~~~l~ 47 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPSAD------FPSFEDALADYLA 47 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEGCC------CCHHHHHHHHHHH
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEecCC------cCCHHHHHHHHHH
Confidence 6889999999999999877662223444554433 3445555555444
No 35
>PRK04123 ribulokinase; Provisional
Probab=93.46 E-value=0.33 Score=44.32 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=41.6
Q ss_pred cEEEEecCCceeEEEEEEE-eCCceEEEEEEEeec--------Ccc-cccccchHHHHHHHHHHHHHHHHcC
Q psy15534 86 QFLALDLGGTNFRVILMHL-KKGLVTDEIVKHYHI--------PDE-LRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L-~G~~~~~~~q~k~~i--------P~~-l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
.+|+||+|.|+.|++.+.. .|+- ....+..|+. |.. ...-+.+++|+-+.++|++.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGEE-LATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCcE-eEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999985 5542 2223333431 221 1233578899999999999887654
No 36
>PRK13321 pantothenate kinase; Reviewed
Probab=93.36 E-value=0.26 Score=41.05 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=28.9
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHH
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~ 140 (157)
+|+||+||||++++.++ ++ + +. .+|++|-... .+.++++..+.+.+.
T Consensus 2 iL~IDIGnT~ik~gl~~--~~-~--i~-~~~~~~T~~~-~~~~~~~~~l~~l~~ 48 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD--GD-R--LL-RSFRLPTDKS-RTSDELGILLLSLFR 48 (256)
T ss_pred EEEEEECCCeEEEEEEE--CC-E--EE-EEEEEecCCC-CCHHHHHHHHHHHHH
Confidence 68999999999999987 33 2 21 2355544322 234666665555443
No 37
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=93.15 E-value=0.37 Score=43.58 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=43.3
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeec--C-cccccccchHHHHHHHHHHHHHHHHcC
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--P-DELRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i--P-~~l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
-+|+||+|.|+.|++.++..|+- ....+..+++ | +....-+.+++|+-+.+++.+.+++.+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~~-v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGNV-VSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCCE-EEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 38999999999999999876643 2333444442 2 122234788999999999999987654
No 38
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=93.01 E-value=0.28 Score=43.89 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=41.5
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeec----C-cccccccchHHHHHHHHHHHHHHHH
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI----P-DELRLGSGLKLFDFLAACISDFVHE 145 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i----P-~~l~~gt~eeLFdfIA~~I~~fl~~ 145 (157)
+|+||+|.|+.|++.++..|+- ....+.+++. | +....-+.+++|+-+.+++++.+.+
T Consensus 3 ilgiD~GTss~K~~l~d~~g~~-va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQGKI-VASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred EEEEecCCCcEEEEEEcCCCCE-EEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999976542 2333333331 2 1223447889999999999999864
No 39
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=92.92 E-value=0.29 Score=43.67 Aligned_cols=57 Identities=16% Similarity=0.021 Sum_probs=38.4
Q ss_pred EEEecCCceeEEEEEEEeCC-ceEEEEEEEeecCccc-----ccccchHHHHHHHHHHHHHHH
Q psy15534 88 LALDLGGTNFRVILMHLKKG-LVTDEIVKHYHIPDEL-----RLGSGLKLFDFLAACISDFVH 144 (157)
Q Consensus 88 LALDLGGTNlRV~~V~L~G~-~~~~~~q~k~~iP~~l-----~~gt~eeLFdfIA~~I~~fl~ 144 (157)
||||+|.||.|++++...|+ ++..+......-|... ..-+.+++|+.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 68999999999999999865 4443211111111111 122567899999999999876
No 40
>PRK13318 pantothenate kinase; Reviewed
Probab=92.62 E-value=0.37 Score=40.05 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=16.1
Q ss_pred EEEEecCCceeEEEEEE
Q psy15534 87 FLALDLGGTNFRVILMH 103 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~ 103 (157)
+|+||+|||++|++.++
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 68999999999999988
No 41
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=91.72 E-value=0.33 Score=41.31 Aligned_cols=20 Identities=45% Similarity=0.700 Sum_probs=16.8
Q ss_pred EEEecCCceeEEEEEEEeCC
Q psy15534 88 LALDLGGTNFRVILMHLKKG 107 (157)
Q Consensus 88 LALDLGGTNlRV~~V~L~G~ 107 (157)
|++|+||||.|+++++-.|.
T Consensus 1 l~~DIGGT~i~~glvd~~g~ 20 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG 20 (316)
T ss_pred CeEecCcceeeEEEEecCCC
Confidence 68999999999999975443
No 42
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=90.95 E-value=1.3 Score=34.76 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=40.5
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHc
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
|.+||+|-++++++..++.+++.+.+....+.-+..++.|.-.+ .+-.+++|.+.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 57999999999999999987777777665555455567774333 344455565555543
No 43
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=89.87 E-value=2.6 Score=35.73 Aligned_cols=63 Identities=13% Similarity=0.270 Sum_probs=41.0
Q ss_pred ccEEEEecCCceeEEEEEEEeCCceEEE-EEEEeecCccc-ccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 85 GQFLALDLGGTNFRVILMHLKKGLVTDE-IVKHYHIPDEL-RLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~L~G~~~~~~-~q~k~~iP~~l-~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
..+++||+|.+++|++.++-.++ .+.+ .....++|... ..+.-.+ .+-++..|.+.+++.+..
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~-~~~v~~~~~~~~p~~~i~~g~i~d-~~~~~~~l~~~~~~~~~~ 67 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGD-RYKLEHYAVEPLPAGIFTEGHIVE-YQAVAEALKELLSELGIN 67 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCC-ceEEEEEEEEECCCCcccCCCccC-HHHHHHHHHHHHHHcCCC
Confidence 35899999999999988886544 4444 44466787654 3432111 244677777777776543
No 44
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=88.67 E-value=1.7 Score=35.80 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=40.3
Q ss_pred EEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 88 LALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
|.||-|||..|++.++..|+ +..+...-|........++...-|.+-+.+++++.+..
T Consensus 1 lGIDgGgTkt~~vl~d~~g~----il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~ 58 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN----ILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLS 58 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE----EEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CEEeeChheeeeEEEeCCCC----EEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCC
Confidence 67999999999999887554 33333444554443445667777888888888887665
No 45
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=84.31 E-value=5.7 Score=34.37 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=37.8
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHH
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 145 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~ 145 (157)
+++||+|-++++++..+..+++.+.+......-...++.|.-.+ .+-+++.|.+.+++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~gi~~G~I~d-~~~~~~~i~~al~~ 59 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRGIKKGVIND-IEAAVGSIQRAIEA 59 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCccCcEEEc-HHHHHHHHHHHHHH
Confidence 68999999999999988887776666444332233466664333 33455556655554
No 46
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=81.89 E-value=3.7 Score=33.74 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=30.6
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcC
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
+++||+|.|+.+++.++ .|+ +....+. ..+..|+-..+.+.+.+++.+
T Consensus 2 ~lGIDiGtts~K~vl~d-~g~----il~~~~~--------~~~~~~~~~~~~l~~~~~~~~ 49 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME-DGK----VIGYKWL--------DTTPVIEETARAILEALKEAG 49 (248)
T ss_pred EEEEEcChhheEEEEEc-CCE----EEEEEEe--------cCCCCHHHHHHHHHHHHHHcC
Confidence 68899999999999997 432 2222222 122346666677777776544
No 47
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=80.82 E-value=2.8 Score=37.12 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=18.8
Q ss_pred ccEEEEecCCceeEEEEEEEeCC
Q psy15534 85 GQFLALDLGGTNFRVILMHLKKG 107 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~L~G~ 107 (157)
.-.|+=|+||||-|.++|+....
T Consensus 6 ~p~LvgDIGGTnaRfaLv~~a~~ 28 (320)
T COG0837 6 YPRLVGDIGGTNARFALVEIAPA 28 (320)
T ss_pred CceEEEecCCcceEEEEeccCCC
Confidence 34677799999999999988654
No 48
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=77.94 E-value=12 Score=33.31 Aligned_cols=59 Identities=8% Similarity=0.159 Sum_probs=40.2
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHH
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 145 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~ 145 (157)
.+.+||+|-|+.+++..++.+++.+.+.-....-...++.|.-.+ .+-.+++|.+-+++
T Consensus 9 ~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~gi~~G~I~d-~~~~~~aI~~av~~ 67 (420)
T PRK09472 9 LVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVND-LESVVKCVQRAIDQ 67 (420)
T ss_pred EEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCCCccCCEEEc-HHHHHHHHHHHHHH
Confidence 588999999999999888877777777665554455667664333 34445555555544
No 49
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=74.53 E-value=11 Score=32.31 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=36.8
Q ss_pred EEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 89 ALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 89 ALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
.||+|-.++|++.++-.+++..-...-..++|........-.=.+.+++.|++.+++++..
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~ 61 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDGEIVDPEALAEALKELLKENKIK 61 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT--
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 4899999999988777554333335567888987654322222456788888888877654
No 50
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=74.52 E-value=15 Score=30.78 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=34.5
Q ss_pred cccccEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHH
Q psy15534 82 LEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVH 144 (157)
Q Consensus 82 ~E~G~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~ 144 (157)
+..+.+++||+|-|+.|+...+..++ . ....+.....++.|.-.+ ++-....|..+++
T Consensus 21 ~~~~~~~~iDiGSssi~~vv~~~~~~-~---~~~~~~~~~~vr~G~i~d-i~~a~~~i~~~~~ 78 (267)
T PRK15080 21 TESPLKVGVDLGTANIVLAVLDEDGQ-P---VAGALEWADVVRDGIVVD-FIGAVTIVRRLKA 78 (267)
T ss_pred CCCCEEEEEEccCceEEEEEEcCCCC-E---EEEEeccccccCCCEEee-HHHHHHHHHHHHH
Confidence 66788999999999999877655443 2 222222233344442222 5555566666665
No 51
>PLN02669 xylulokinase
Probab=72.41 E-value=6.5 Score=36.53 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=36.4
Q ss_pred cccEEEEecCCceeEEEEEEEeCCceEEEEEEEeec--Cccc----ccccch----------HHHHHHHHHHHHHHH
Q psy15534 84 QGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PDEL----RLGSGL----------KLFDFLAACISDFVH 144 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i--P~~l----~~gt~e----------eLFdfIA~~I~~fl~ 144 (157)
...||+||+|.|++|++.++..|+- ....+..|.+ |..- ..-+.+ ..|.-+..++++.++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~v-v~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~ 82 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRI-VASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK 82 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCE-EEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999876643 2222333321 2211 011223 344888888888763
No 52
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=71.42 E-value=24 Score=27.76 Aligned_cols=59 Identities=22% Similarity=0.448 Sum_probs=43.5
Q ss_pred EEEEecCCceeEEEEEEEeCCc--eEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 87 FLALDLGGTNFRVILMHLKKGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~--~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
..+++|=|+..++|++.+.++. .++...+++.+++.- +.+++=+|... +++++++++.+
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq~~-f~kl~~dy~Vd 63 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQFT-FAKLMEDYKVD 63 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHHHH-HHHHHHHcCCC
Confidence 5678889999999998876553 345678888888765 56666666555 88888888764
No 53
>KOG2517|consensus
Probab=69.27 E-value=24 Score=33.27 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=45.1
Q ss_pred ccEEEEecCCceeEEEEEEEeCCceEEEEEEEeec--Cc-ccccccchHHHHHHHHHHHHHHHHcCC
Q psy15534 85 GQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI--PD-ELRLGSGLKLFDFLAACISDFVHEYQV 148 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~i--P~-~l~~gt~eeLFdfIA~~I~~fl~~~~~ 148 (157)
..+++||.|.|.-|.+..+-.-+......+++... |+ ....-+++++|.-+-+||+...++.+.
T Consensus 6 ~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~ 72 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGV 72 (516)
T ss_pred ceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcc
Confidence 45899999999999999874433333333333222 22 244568999999999999998887644
No 54
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=68.34 E-value=19 Score=31.68 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=44.5
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
-||.||-|||..|+..-+..|+ +.-+-..=|-+..+...++=+.-|.+.|.+.+.+.+..
T Consensus 6 ~~lGVDGGGTkt~a~l~~~~g~----vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~ 65 (301)
T COG2971 6 YFLGVDGGGTKTRAVLADEDGN----VLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLK 65 (301)
T ss_pred EEEEEccCCcceEEEEEcCCCc----EEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCCC
Confidence 3899999999999988775443 23333344666777766888888999999998877654
No 55
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=65.43 E-value=5.9 Score=34.87 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=18.9
Q ss_pred cccEEEEecCCceeEEEEEEEeC
Q psy15534 84 QGQFLALDLGGTNFRVILMHLKK 106 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~L~G 106 (157)
+..|+++|=|.||||+-+++=+|
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg 26 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDG 26 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCc
Confidence 46799999999999998765443
No 56
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=63.91 E-value=29 Score=31.56 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=23.8
Q ss_pred cccEEEEecCCceeEEEEEEEeCCceEEEEE
Q psy15534 84 QGQFLALDLGGTNFRVILMHLKKGLVTDEIV 114 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~L~G~~~~~~~q 114 (157)
.+.++++|+||+++-|..+++..+ .+.+..
T Consensus 187 ~~~vlv~D~Gggt~dvs~~~~~~~-~~~v~~ 216 (602)
T PF00012_consen 187 GKTVLVVDFGGGTFDVSVVEFSNG-QFEVLA 216 (602)
T ss_dssp EEEEEEEEEESSEEEEEEEEEETT-EEEEEE
T ss_pred ccceeccccccceEeeeehhcccc-cccccc
Confidence 567999999999999999998743 444433
No 57
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=62.56 E-value=26 Score=30.94 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=34.7
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecC-cccccccchHHHHHHH---HHHHHHHHHcCC
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP-DELRLGSGLKLFDFLA---ACISDFVHEYQV 148 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP-~~l~~gt~eeLFdfIA---~~I~~fl~~~~~ 148 (157)
.|+|..|||+.++++++-.+. +.++...-+ +.+. ..+..-+.++ +.|.+++++++.
T Consensus 2 il~in~Gsts~k~alf~~~~~----~~~~~~~~~~~~~~--~~~~~~~q~~~r~~~i~~~l~~~~~ 61 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERP----LFEETLRHSVEELG--RFKNVIDQFEFRKQVILQFLEEHGI 61 (351)
T ss_pred EEEEecCchhheEEEEeCCCc----eeeeeecCCHHHhc--ccccHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999654332 111211112 2222 3445566677 778888888754
No 58
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481
Probab=58.55 E-value=42 Score=24.24 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=49.1
Q ss_pred hccCCcchhHHHHHHHHHHHH---HHHHhhcccccCHHHHHHHHHHHHHHHHhh-ccccCCCCC
Q psy15534 14 VHQNDTETESVRLILSAAVCQ---QQTALETRSSVSGEARRSRVQRAARFILQG-TLFSLGGTN 73 (157)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~---~~~~le~~F~v~~~~L~~iv~~~~~f~~em-~gL~~~~s~ 73 (157)
.|.|-.-|..-|+.|...|.+ -+.+....|.|+..+.++-+. .|..+- .||.+-+|-
T Consensus 3 ~H~nA~Lt~~gR~~lv~~vv~~g~~~a~aA~~~gVS~~Ta~kW~~---Ryra~G~~GL~DRSSR 63 (85)
T PF13011_consen 3 SHKNARLTPRGRLRLVRRVVEQGWPVAHAAAEFGVSRRTAYKWLA---RYRAEGEAGLQDRSSR 63 (85)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHH---HHHHcCcccccccCCC
Confidence 589999999999999998866 478889999999999999999 999887 788776554
No 59
>PRK13324 pantothenate kinase; Reviewed
Probab=57.51 E-value=42 Score=28.41 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=30.6
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHH
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACI 139 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I 139 (157)
.|+||+|=||...+..+ +++ ....|+++-.-...+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~--~~~----~~~~~r~~t~~~~~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GDR----IVSQIRYATSSVDSTSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEE--CCE----EEEEEEEecCccccchHHHHHHHHHHH
Confidence 58999999999999877 332 112466665223346677776665544
No 60
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=56.48 E-value=89 Score=23.98 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=36.7
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEE-EEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDE-IVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~-~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
+.|+||.|-+|+=.+.++..++ ...+ .......+... +..+=...|.+.|.++++++.++
T Consensus 1 rILGIDPGl~~~G~av~~~~~~-~~~~~~~g~i~t~~~~---~~~~rl~~I~~~l~~~i~~~~Pd 61 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGR-KLIYLASGVIRTSSDA---PLPSRLKTIYDGLNEVIDQFQPD 61 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCC-eEEEEEeeEEECCCCC---CHHHHHHHHHHHHHHHHHHhCCC
Confidence 4699999999999999998774 3333 33344444221 11122344666667777666554
No 61
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=54.74 E-value=20 Score=23.31 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=28.9
Q ss_pred CCcchhHHHHHHH-HHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHhh
Q psy15534 17 NDTETESVRLILS-AAVCQQQTALETRSSVSGEARRSRVQRAARFILQG 64 (157)
Q Consensus 17 ~~~~~~~~~~~~~-~~~~~~~~~le~~F~v~~~~L~~iv~~~~~f~~em 64 (157)
|++-..-.+++=. ..+.+..+.+.+.|.++.+.++.-+. .|+.+|
T Consensus 16 n~~a~~Iw~~~~g~~t~~ei~~~l~~~y~~~~~~~~~dv~---~fl~~L 61 (68)
T PF05402_consen 16 NETAAFIWELLDGPRTVEEIVDALAEEYDVDPEEAEEDVE---EFLEQL 61 (68)
T ss_dssp -THHHHHHHH--SSS-HHHHHHHHHHHTT--HHHHHHHHH---HHHHHH
T ss_pred cHHHHHHHHHccCCCCHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHH
Confidence 4444433444321 34777888889999999998888888 999988
No 62
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=54.31 E-value=17 Score=33.15 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=17.2
Q ss_pred EEEecCCceeEEEEEEEeCCce
Q psy15534 88 LALDLGGTNFRVILMHLKKGLV 109 (157)
Q Consensus 88 LALDLGGTNlRV~~V~L~G~~~ 109 (157)
+|+|+|.|+++..+++|.....
T Consensus 4 iAvDiGTTti~~~L~dl~~G~~ 25 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLETGEV 25 (412)
T ss_dssp EEEEE-SSEEEEEEEETTT--E
T ss_pred EEEEcchhheeeEEEECCCCCE
Confidence 7999999999999999975443
No 63
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=52.28 E-value=18 Score=25.44 Aligned_cols=21 Identities=19% Similarity=0.649 Sum_probs=17.5
Q ss_pred ccEEEEecCCceeEEE-EEEEe
Q psy15534 85 GQFLALDLGGTNFRVI-LMHLK 105 (157)
Q Consensus 85 G~fLALDLGGTNlRV~-~V~L~ 105 (157)
+.+.+.|+||.|+|+. .|.+.
T Consensus 36 ~~~~vFnI~GN~yRlI~~I~f~ 57 (76)
T PF09907_consen 36 NNRVVFNIGGNKYRLIAKIDFE 57 (76)
T ss_pred CCEEEEEcCCCcEEEEEEEEeC
Confidence 7899999999999986 46553
No 64
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=51.49 E-value=65 Score=26.79 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=29.3
Q ss_pred EEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHH
Q psy15534 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACI 139 (157)
Q Consensus 88 LALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I 139 (157)
|+||+|=||+.++..+ ++ + + ...|++|-... .+.+++..++...+
T Consensus 2 L~iDiGNT~i~~g~~~--~~-~--~-~~~~r~~t~~~-~t~de~~~~l~~~~ 46 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GN-K--V-YQFWRLATNLM-KTYDEHSEFLKELF 46 (243)
T ss_pred EEEEECCCcEEEEEEE--CC-E--E-EEEEEecCCCc-cChHHHHHHHHHHH
Confidence 7899999999998865 33 2 2 22577775544 35666665554443
No 65
>PRK13320 pantothenate kinase; Reviewed
Probab=50.67 E-value=50 Score=27.51 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=15.9
Q ss_pred EEEEecCCceeEEEEEE
Q psy15534 87 FLALDLGGTNFRVILMH 103 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~ 103 (157)
+|+||+|-|++..+.++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999887
No 66
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=49.66 E-value=34 Score=32.17 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=47.1
Q ss_pred ccEEEEecCCceeEEEEEEEeCCceEE--E-EEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 85 GQFLALDLGGTNFRVILMHLKKGLVTD--E-IVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~L~G~~~~~--~-~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
.-.+|||-|.|+-|.....=.|+-... . ..+-||-|.-+- -++.|+|.-...++.+.+.+.+..
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVE-hDp~eIw~~~~~~l~~a~~~~~i~ 71 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVE-HDPLEIWASVRSVLKEALAKAGIK 71 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccc-cCHHHHHHHHHHHHHHHHHHcCCC
Confidence 457999999999999887666653211 1 234577777543 468999999999999999887543
No 67
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=49.62 E-value=64 Score=30.27 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=22.8
Q ss_pred cccEEEEecCCceeEEEEEEEeCCceEEEE
Q psy15534 84 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 113 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~L~G~~~~~~~ 113 (157)
...++++|+||.++-|..+++.+ +.+.+.
T Consensus 184 ~~~vlV~D~GggT~dvsv~~~~~-~~~~vl 212 (627)
T PRK00290 184 DEKILVYDLGGGTFDVSILEIGD-GVFEVL 212 (627)
T ss_pred CCEEEEEECCCCeEEEEEEEEeC-CeEEEE
Confidence 46699999999999999999854 344443
No 68
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=47.73 E-value=61 Score=30.83 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=47.2
Q ss_pred EEEEecCCceeEEEEEEEe-CCc--eEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 87 FLALDLGGTNFRVILMHLK-KGL--VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~-G~~--~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
++++|+|.-.-|++.++.. |.- .......-|.++...-.-++.+.|.-+-.+|.+.+++.+.+
T Consensus 5 ~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~ 70 (544)
T COG1069 5 VIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVD 70 (544)
T ss_pred EEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999999998 442 11222233444444445689999999999999999998765
No 69
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=47.68 E-value=21 Score=33.93 Aligned_cols=39 Identities=31% Similarity=0.481 Sum_probs=27.9
Q ss_pred ccccEEEEecCCceeEEEEEEEeCCceEEE-EEEEeecCc
Q psy15534 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDE-IVKHYHIPD 121 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~L~G~~~~~~-~q~k~~iP~ 121 (157)
+.=-=+|+|+|.|.+|.-+|.|..+....+ ....-++|.
T Consensus 162 ~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~ 201 (614)
T COG3894 162 NEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPG 201 (614)
T ss_pred ceeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCC
Confidence 333358999999999999999987765444 333455554
No 70
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=47.24 E-value=17 Score=31.96 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.5
Q ss_pred cccccEEEEecCCceeEEEEEE
Q psy15534 82 LEQGQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 82 ~E~G~fLALDLGGTNlRV~~V~ 103 (157)
...+..+.+|+|||..-|+.|.
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred hcCCCEEEEEcCccceeeEEec
Confidence 3467799999999999998763
No 71
>PRK13410 molecular chaperone DnaK; Provisional
Probab=46.10 E-value=86 Score=30.02 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=23.5
Q ss_pred ccccEEEEecCCceeEEEEEEEeCCceEEEE
Q psy15534 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEI 113 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~L~G~~~~~~~ 113 (157)
..+.++++|+||.++-|..+++.+ +.+.+.
T Consensus 185 ~~~~vlV~DlGgGT~Dvsv~~~~~-g~~~V~ 214 (668)
T PRK13410 185 SSQTVLVFDLGGGTFDVSLLEVGN-GVFEVK 214 (668)
T ss_pred CCCEEEEEECCCCeEEEEEEEEcC-CeEEEE
Confidence 456699999999999999999854 455443
No 72
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=45.33 E-value=23 Score=33.88 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=22.0
Q ss_pred Ccccccc--cccccEEEEecCCceeEEEEEE
Q psy15534 75 TNLSGEV--LEQGQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 75 ~MlPT~V--~E~G~fLALDLGGTNlRV~~V~ 103 (157)
..+-+|+ .-.|.+++||||.||..|+.++
T Consensus 15 ~~~~~~~~~~~~~~viGIDLGTTnS~vA~~~ 45 (657)
T PTZ00186 15 ARLARHESQKVQGDVIGVDLGTTYSCVATMD 45 (657)
T ss_pred ccccccccCcccceEEEEEeCcCeEEEEEEe
Confidence 4555566 2356799999999999998764
No 73
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=43.53 E-value=19 Score=33.90 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.4
Q ss_pred ccccEEEEecCCceeEEEEEE
Q psy15534 83 EQGQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~ 103 (157)
.+...++||||.||..|+.++
T Consensus 17 ~~~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 17 QRRLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred cCCeEEEEEeccccEEEEEEE
Confidence 334689999999999999873
No 74
>PF03753 HHV6-IE: Human herpesvirus 6 immediate early protein ; InterPro: IPR005507 The proteins in this family are poorly characterised, but an investigation [] has indicated that the immediate early protein is required for the down-regulation of MHC class I expression in dendritic cells. Human herpesvirus 6 immediate early protein is also referred to as U90.
Probab=41.32 E-value=37 Score=33.24 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=46.4
Q ss_pred ccchhhhhhccCCcchhHHHHHHHHHH------------HHHHHHhhcccccCHHHHHHHHHHHHHHHHhh---ccccCC
Q psy15534 6 ICDQTFLEVHQNDTETESVRLILSAAV------------CQQQTALETRSSVSGEARRSRVQRAARFILQG---TLFSLG 70 (157)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~le~~F~v~~~~L~~iv~~~~~f~~em---~gL~~~ 70 (157)
-||.|||.+|-|-..--...--|++|| ||-++...+.|.|+---+-.-++ ..++.+ .|+-+.
T Consensus 232 ~CD~tFLKih~NC~NLI~AAKNl~~avLQ~IViCS~EFS~q~~k~~R~~FKiT~m~MI~~AC---e~lE~~YD~TG~i~~ 308 (993)
T PF03753_consen 232 MCDETFLKIHVNCKNLITAAKNLGAAVLQSIVICSKEFSWQKLKANRKEFKITMMNMITDAC---EQLEKLYDDTGLIKP 308 (993)
T ss_pred hhHHhHHHhhccHHHHHHHHHHHHHHHHHHhheecccchHhhhhhhhhcccchHHHHHHHHH---HHHHHhcccccceee
Confidence 499999999998654333333456666 45678888888887544433333 776666 555544
Q ss_pred CCCCCcccccc
Q psy15534 71 GTNLTNLSGEV 81 (157)
Q Consensus 71 ~s~l~MlPT~V 81 (157)
-.+++..-.||
T Consensus 309 L~s~~I~~GYi 319 (993)
T PF03753_consen 309 LTSISIMNGYI 319 (993)
T ss_pred ccHHHhhhhhe
Confidence 44445555566
No 75
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=40.83 E-value=22 Score=33.70 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.4
Q ss_pred ccEEEEecCCceeEEEEEE
Q psy15534 85 GQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~ 103 (157)
+.+++||||.||..|+.++
T Consensus 4 ~~~iGIDlGTt~s~va~~~ 22 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWK 22 (653)
T ss_pred ccEEEEEeCcccEEEEEEe
Confidence 5689999999999998764
No 76
>PRK13410 molecular chaperone DnaK; Provisional
Probab=40.49 E-value=27 Score=33.43 Aligned_cols=19 Identities=42% Similarity=0.684 Sum_probs=16.9
Q ss_pred ccEEEEecCCceeEEEEEE
Q psy15534 85 GQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~ 103 (157)
|..++||||.||..|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CcEEEEEeCCCcEEEEEEE
Confidence 5689999999999999875
No 77
>PRK13411 molecular chaperone DnaK; Provisional
Probab=39.56 E-value=40 Score=32.03 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=23.0
Q ss_pred cccEEEEecCCceeEEEEEEEeCCceEEEE
Q psy15534 84 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 113 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~L~G~~~~~~~ 113 (157)
.+.++++|+||.++-|..+++.+ +.+.+.
T Consensus 185 ~~~vlV~DlGgGT~dvsi~~~~~-~~~~V~ 213 (653)
T PRK13411 185 EQLILVFDLGGGTFDVSILQLGD-GVFEVK 213 (653)
T ss_pred CCEEEEEEcCCCeEEEEEEEEeC-CEEEEE
Confidence 56699999999999999999854 344443
No 78
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=39.51 E-value=1.7e+02 Score=24.69 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=36.4
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEE--EEEEeecCcccc-ccc-chHHHHHHHHHHHHHHHH
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDE--IVKHYHIPDELR-LGS-GLKLFDFLAACISDFVHE 145 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~--~q~k~~iP~~l~-~gt-~eeLFdfIA~~I~~fl~~ 145 (157)
|=+||+|-.++|....++.++.-..+ .....++.+.+- ++. .++=.+-+.++++.|.+.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~ 64 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAEL 64 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 45899999999999999874322222 334466666552 222 344455555667777654
No 79
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=39.34 E-value=29 Score=32.54 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=16.6
Q ss_pred ccEEEEecCCceeEEEEEE
Q psy15534 85 GQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~ 103 (157)
|.+++||||.||..|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVME 20 (627)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999876
No 80
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=39.22 E-value=39 Score=31.83 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=21.7
Q ss_pred cccccEEEEecCCceeEEEEEEEeC
Q psy15534 82 LEQGQFLALDLGGTNFRVILMHLKK 106 (157)
Q Consensus 82 ~E~G~fLALDLGGTNlRV~~V~L~G 106 (157)
.+.|.++++|+||.++-|..+++.+
T Consensus 190 ~~~~~vlV~DlGGGT~DvSi~~~~~ 214 (595)
T PRK01433 190 NQKGCYLVYDLGGGTFDVSILNIQE 214 (595)
T ss_pred CCCCEEEEEECCCCcEEEEEEEEeC
Confidence 3567899999999999999999864
No 81
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=39.14 E-value=31 Score=29.32 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=14.9
Q ss_pred cccEEEEecCCceeEEEEEE
Q psy15534 84 QGQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~ 103 (157)
....+.+|+|||..-|+.|.
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEE
T ss_pred CCCEEEEeCCCCEEEEEEEE
Confidence 33599999999999999984
No 82
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=38.83 E-value=22 Score=33.82 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=17.7
Q ss_pred ccccEEEEecCCceeEEEEEE
Q psy15534 83 EQGQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~ 103 (157)
-.|.+++||||.||..|+.++
T Consensus 39 ~~~~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 39 ATGDIVGIDLGTTNSCVAIME 59 (663)
T ss_pred hcCcEEEEEECcccEEEEEEe
Confidence 346799999999999998764
No 83
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=38.70 E-value=1.8e+02 Score=22.32 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=32.2
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
.|.||-|-+|.-.+.++..++...-+..-..+.+... +-.+=...|.+.+.++++++.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~~~~---~~~~Rl~~I~~~l~~li~~~~P~ 60 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTSSKD---SLPERLKEIYEELEELIEEYNPD 60 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE---S-----HHHHHHHHHHHHHHHHHHH--S
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECCCCC---CHHHHHHHHHHHHHHHHHhhCCC
Confidence 4789999999999999996665333344444444321 11222335566667777776664
No 84
>PRK13411 molecular chaperone DnaK; Provisional
Probab=38.37 E-value=30 Score=32.79 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=16.5
Q ss_pred ccEEEEecCCceeEEEEEE
Q psy15534 85 GQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~ 103 (157)
|..++||||.||..|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 4689999999999999764
No 85
>PLN03184 chloroplast Hsp70; Provisional
Probab=37.88 E-value=27 Score=33.38 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.4
Q ss_pred ccEEEEecCCceeEEEEEE
Q psy15534 85 GQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~ 103 (157)
+.+++||||.||..|+.++
T Consensus 39 ~~viGIDlGTt~s~va~~~ 57 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAME 57 (673)
T ss_pred CCEEEEEeCcCcEEEEEEE
Confidence 3589999999999998874
No 86
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=37.34 E-value=34 Score=31.08 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=13.9
Q ss_pred EEEEecCCceeEEEEEE
Q psy15534 87 FLALDLGGTNFRVILMH 103 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~ 103 (157)
.++||+|.||.+|+.+.
T Consensus 1 viGID~Gt~~~~va~~~ 17 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFK 17 (602)
T ss_dssp EEEEEE-SSEEEEEEEE
T ss_pred CEEEEeccCCEEEEEEE
Confidence 47999999999999865
No 87
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=36.65 E-value=48 Score=31.27 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=21.2
Q ss_pred ccccEEEEecCCceeEEEEEEEeCC
Q psy15534 83 EQGQFLALDLGGTNFRVILMHLKKG 107 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~L~G~ 107 (157)
..+.++++|+||.++-|+.+++.++
T Consensus 199 ~~~~vlV~DlGGGT~DvSv~~~~~~ 223 (616)
T PRK05183 199 QEGVIAVYDLGGGTFDISILRLSKG 223 (616)
T ss_pred CCCEEEEEECCCCeEEEEEEEeeCC
Confidence 4566999999999999999998653
No 88
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.92 E-value=1.5e+02 Score=26.83 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=46.4
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEE-EEEEeecCcccccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDE-IVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~-~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
..+.||+|-+...|+..+-.| +.+.+ +...-++|+.......--=.+-+|+.|++.+.+++..
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g-~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~ 74 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSG-NRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIK 74 (354)
T ss_pred ceeeEeeccceEEEEEEcccC-CceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcc
Confidence 368899999999986665223 35555 4456788998886654444788999999999998765
No 89
>CHL00094 dnaK heat shock protein 70
Probab=34.79 E-value=2.5e+02 Score=26.48 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=23.2
Q ss_pred ccccEEEEecCCceeEEEEEEEeCCceEEEE
Q psy15534 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEI 113 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~L~G~~~~~~~ 113 (157)
..+.++++|+||.++=|..+++.+ +.+.+.
T Consensus 185 ~~~~vlV~DlGgGT~DvSv~~~~~-~~~~vl 214 (621)
T CHL00094 185 NNETILVFDLGGGTFDVSILEVGD-GVFEVL 214 (621)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEcC-CEEEEE
Confidence 345699999999999999999854 444443
No 90
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=34.06 E-value=35 Score=29.25 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=13.1
Q ss_pred cEEEEecCCceeEEE
Q psy15534 86 QFLALDLGGTNFRVI 100 (157)
Q Consensus 86 ~fLALDLGGTNlRV~ 100 (157)
+.++||||.||.||+
T Consensus 5 ~~~giDlGt~~~~i~ 19 (335)
T PRK13929 5 TEIGIDLGTANILVY 19 (335)
T ss_pred CeEEEEcccccEEEE
Confidence 469999999999985
No 91
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=33.49 E-value=39 Score=31.30 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=15.2
Q ss_pred EEEEecCCceeEEEEEE
Q psy15534 87 FLALDLGGTNFRVILMH 103 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~ 103 (157)
.++||||.||..|+.++
T Consensus 2 viGIDlGtt~s~va~~~ 18 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVME 18 (595)
T ss_pred EEEEEeCcccEEEEEEE
Confidence 58999999999999875
No 92
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=33.32 E-value=57 Score=30.96 Aligned_cols=28 Identities=32% Similarity=0.661 Sum_probs=22.5
Q ss_pred cccEEEEecCCceeEEEEEEEeCCceEEE
Q psy15534 84 QGQFLALDLGGTNFRVILMHLKKGLVTDE 112 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~L~G~~~~~~ 112 (157)
.+.++++|+||.++-|..+++.++ .+.+
T Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~-~~~v 220 (653)
T PTZ00009 193 EKNVLIFDLGGGTFDVSLLTIEDG-IFEV 220 (653)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC-eEEE
Confidence 466999999999999999999643 3443
No 93
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=33.10 E-value=59 Score=30.16 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=22.1
Q ss_pred cccEEEEecCCceeEEEEEEEeCCceEEE
Q psy15534 84 QGQFLALDLGGTNFRVILMHLKKGLVTDE 112 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~L~G~~~~~~ 112 (157)
...++++|+||.++-|..+++.+ +.+.+
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~-~~~~v 209 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGD-GVFEV 209 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecC-CeEEE
Confidence 45699999999999999999864 34443
No 94
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=32.84 E-value=1.7e+02 Score=23.11 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=29.2
Q ss_pred EEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHcC
Q psy15534 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 88 LALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
++||.||||-=++.+.-.+ +.. .. .+.|- +.+++..=|.+.|.+.+...+
T Consensus 2 igIDvGGT~TD~v~~d~~~-~~~--~~--~K~~T-----t~~d~~~gi~~al~~l~~~~~ 51 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDT-GVV--AT--AKVPT-----TPDDPAEGILEALDALLEESG 51 (176)
T ss_pred eeEecCCCcEEEEEEeCCC-CEE--EE--EEeCC-----CCcCHHHHHHHHHHhhhcccC
Confidence 6899999999998765543 111 11 11222 235555556666666665543
No 95
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=32.84 E-value=47 Score=24.26 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=17.9
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEE
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDE 112 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~ 112 (157)
+.+||+|+++.+++..+....+..++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~v 26 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRV 26 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEE
Confidence 46899999999998777644444333
No 96
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=32.82 E-value=58 Score=30.56 Aligned_cols=24 Identities=38% Similarity=0.746 Sum_probs=20.9
Q ss_pred ccccEEEEecCCceeEEEEEEEeC
Q psy15534 83 EQGQFLALDLGGTNFRVILMHLKK 106 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~L~G 106 (157)
..+.++++|+||.++=|..+++.+
T Consensus 179 ~~~~vlV~DlGgGT~DvSi~~~~~ 202 (599)
T TIGR01991 179 SEGIYAVYDLGGGTFDVSILKLTK 202 (599)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEcC
Confidence 456799999999999999999865
No 97
>PLN03184 chloroplast Hsp70; Provisional
Probab=32.57 E-value=2.4e+02 Score=26.97 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=23.3
Q ss_pred ccccEEEEecCCceeEEEEEEEeCCceEEEE
Q psy15534 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEI 113 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~L~G~~~~~~~ 113 (157)
..+.++++|+||.++=|+.+++.+ +.+.+.
T Consensus 222 ~~~~vlV~DlGgGT~DvSi~~~~~-~~~eVl 251 (673)
T PLN03184 222 SNETILVFDLGGGTFDVSVLEVGD-GVFEVL 251 (673)
T ss_pred CCCEEEEEECCCCeEEEEEEEecC-CEEEEE
Confidence 446699999999999999999854 444443
No 98
>CHL00094 dnaK heat shock protein 70
Probab=32.53 E-value=43 Score=31.50 Aligned_cols=19 Identities=42% Similarity=0.669 Sum_probs=16.5
Q ss_pred ccEEEEecCCceeEEEEEE
Q psy15534 85 GQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~ 103 (157)
+.+++||||.||..|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVME 20 (621)
T ss_pred CceEEEEeCcccEEEEEEE
Confidence 3589999999999999874
No 99
>PRK11678 putative chaperone; Provisional
Probab=32.40 E-value=61 Score=29.54 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=21.2
Q ss_pred ccccEEEEecCCceeEEEEEEEeCC
Q psy15534 83 EQGQFLALDLGGTNFRVILMHLKKG 107 (157)
Q Consensus 83 E~G~fLALDLGGTNlRV~~V~L~G~ 107 (157)
+...+|++|+||.++=++.|++.++
T Consensus 207 ~~~~vlV~D~GGGT~D~Svv~~~~~ 231 (450)
T PRK11678 207 EEKRVLVVDIGGGTTDCSMLLMGPS 231 (450)
T ss_pred CCCeEEEEEeCCCeEEEEEEEecCc
Confidence 4456999999999999999999654
No 100
>COG2859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.32 E-value=1.1e+02 Score=26.23 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=48.8
Q ss_pred CCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHH---HHHHHHHHcCCCCCCCCCC
Q psy15534 93 GGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAA---CISDFVHEYQVHDRVIPMG 156 (157)
Q Consensus 93 GGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~---~I~~fl~~~~~~~~~LPLG 156 (157)
+-||=|+..|+=..+....-....|+|.=....-+..+||.-+-. .|..|+.++|..++.+.||
T Consensus 33 ~k~~er~v~VkGlSerev~adt~~w~i~~s~~~n~~~~l~~~l~~~~~kI~afl~~~gi~e~~Ismg 99 (237)
T COG2859 33 FKTNERYVIVKGLSEREVTADTIIWGISFSSQGNTLQALYQDLEQQTEKIQAFLQAQGIPEAEISMG 99 (237)
T ss_pred hcccccEEEEecccccceeeceEEEEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHcCCCHHHhhcC
Confidence 557788877765566666667888999888877788999986654 4788999998876666665
No 101
>PRK13326 pantothenate kinase; Reviewed
Probab=30.87 E-value=1.7e+02 Score=24.83 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=27.5
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHH
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLA 136 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA 136 (157)
..|+||.|=||..++..+ +++ +. ..|+++-.. ..+.++++.++.
T Consensus 7 ~~L~IDiGNT~ik~glf~--~~~---l~-~~~r~~t~~-~~t~de~~~~l~ 50 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK--DNK---MQ-IFCKLKTKL-DLSFDELYSFLK 50 (262)
T ss_pred EEEEEEeCCCeEEEEEEE--CCE---EE-EEEEeccCC-CCCHHHHHHHHh
Confidence 379999999999998765 332 11 246666322 235666665553
No 102
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=29.78 E-value=72 Score=30.56 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=22.8
Q ss_pred cccEEEEecCCceeEEEEEEEeCCceEEEE
Q psy15534 84 QGQFLALDLGGTNFRVILMHLKKGLVTDEI 113 (157)
Q Consensus 84 ~G~fLALDLGGTNlRV~~V~L~G~~~~~~~ 113 (157)
.+.++++|+||.+|=|..+++.+ +.+.+.
T Consensus 211 ~~~vlV~DlGGGT~DvSil~~~~-g~~~V~ 239 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVLEIAG-GVFEVK 239 (657)
T ss_pred CCEEEEEECCCCeEEEEEEEEeC-CEEEEE
Confidence 46699999999999999999864 344443
No 103
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=29.61 E-value=2.9e+02 Score=25.29 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=43.2
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHHHc
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~~~ 146 (157)
-|.+||+|-++..++.-++..++...+.-....-+..+++|.-.+ .+-.+.+|++-+++.
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGik~G~I~d-i~~~~~sI~~av~~A 66 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGIKKGVIVD-LDAAAQSIKKAVEAA 66 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCcccccceEEc-HHHHHHHHHHHHHHH
Confidence 589999999999999999988875555444555566677775444 355677777776653
No 104
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=29.55 E-value=1.8e+02 Score=25.13 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=14.8
Q ss_pred EEEEecCCceeEEEEEE
Q psy15534 87 FLALDLGGTNFRVILMH 103 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~ 103 (157)
.++||+|||...++...
T Consensus 2 ~iGiDiGgT~~Kiv~~~ 18 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEE 18 (279)
T ss_pred eEEEEeCcceEEEEEEc
Confidence 58999999999998754
No 105
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=29.08 E-value=40 Score=28.61 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.4
Q ss_pred EEEEecCCceeEEEE
Q psy15534 87 FLALDLGGTNFRVIL 101 (157)
Q Consensus 87 fLALDLGGTNlRV~~ 101 (157)
.++||||-||-|++.
T Consensus 4 ~~giDlGt~~s~i~~ 18 (333)
T TIGR00904 4 DIGIDLGTANTLVYV 18 (333)
T ss_pred eeEEecCcceEEEEE
Confidence 389999999999975
No 106
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=28.59 E-value=79 Score=27.52 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=30.0
Q ss_pred EEEEEEEeCCceEEEEEEEeecCccccc-ccchHHHHHHHHHHHHHHHHcC
Q psy15534 98 RVILMHLKKGLVTDEIVKHYHIPDELRL-GSGLKLFDFLAACISDFVHEYQ 147 (157)
Q Consensus 98 RV~~V~L~G~~~~~~~q~k~~iP~~l~~-gt~eeLFdfIA~~I~~fl~~~~ 147 (157)
+|+.|.|.|+...++ .+..|+.+-. .+...||+++++.|...-+.++
T Consensus 3 kvavl~LaGG~GTRL---G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~ 50 (300)
T cd00897 3 KLVVLKLNGGLGTSM---GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYG 50 (300)
T ss_pred cEEEEEecCCccccc---CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcC
Confidence 578888888755443 1222222111 2578899999999988777654
No 107
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=28.41 E-value=36 Score=31.93 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.9
Q ss_pred EEEEecCCceeEEEEEE
Q psy15534 87 FLALDLGGTNFRVILMH 103 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~ 103 (157)
.++||||.||-.|+.++
T Consensus 1 ~iGIDlGTtns~va~~~ 17 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVR 17 (599)
T ss_pred CEEEEEccccEEEEEEE
Confidence 37899999999999875
No 108
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=28.02 E-value=1.1e+02 Score=23.97 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEecCCceeEEEEEEEeCCc
Q psy15534 87 FLALDLGGTNFRVILMHLKKGL 108 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~ 108 (157)
++|||.|--|+=.|.++..++.
T Consensus 3 i~sIDiGikNlA~~iie~~~~~ 24 (143)
T PF04848_consen 3 ILSIDIGIKNLAYCIIEFEGNK 24 (143)
T ss_pred EEEEecCCCceeEEEEEcCCCe
Confidence 6899999999999999997765
No 109
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=27.47 E-value=47 Score=28.28 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=13.0
Q ss_pred EEEecCCceeEEEE
Q psy15534 88 LALDLGGTNFRVIL 101 (157)
Q Consensus 88 LALDLGGTNlRV~~ 101 (157)
++||||-||.|++.
T Consensus 6 ~gIDlGt~~~~i~~ 19 (336)
T PRK13928 6 IGIDLGTANVLVYV 19 (336)
T ss_pred eEEEcccccEEEEE
Confidence 89999999999976
No 110
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=26.46 E-value=59 Score=28.53 Aligned_cols=15 Identities=33% Similarity=0.611 Sum_probs=12.3
Q ss_pred cEEEEecCCceeEEE
Q psy15534 86 QFLALDLGGTNFRVI 100 (157)
Q Consensus 86 ~fLALDLGGTNlRV~ 100 (157)
+.++||||-+|.||+
T Consensus 2 ~~igIDLGT~~t~i~ 16 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIY 16 (326)
T ss_dssp SEEEEEE-SSEEEEE
T ss_pred CceEEecCcccEEEE
Confidence 468999999999995
No 111
>PF13941 MutL: MutL protein
Probab=26.04 E-value=50 Score=30.59 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhh---cccc--CCCCCCCcccccc----------c-ccccEEEEecCC
Q psy15534 51 RSRVQRAARFILQG---TLFS--LGGTNLTNLSGEV----------L-EQGQFLALDLGG 94 (157)
Q Consensus 51 ~~iv~~~~~f~~em---~gL~--~~~s~l~MlPT~V----------~-E~G~fLALDLGG 94 (157)
+.|.+ -|.++. +|++ .+-.+-+.+||+- . .-|.++++|+||
T Consensus 201 ~~I~~---~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 201 EAIRE---VFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred HHHHH---HHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
No 112
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=25.82 E-value=3.3e+02 Score=21.38 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=34.4
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEEEEEEeecCccc-ccccchHHHHHHHHHHHHHHHHcCCC
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDEL-RLGSGLKLFDFLAACISDFVHEYQVH 149 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l-~~gt~eeLFdfIA~~I~~fl~~~~~~ 149 (157)
+.|+||-|-++.=.+.++..|+...-+..-..+.+... ....-.++| +.|.++++++.++
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~~~~~~~~Rl~~I~----~~l~~~i~~~~Pd 63 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTPSDLDLPERLKQIY----DGLSELIDEYQPD 63 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEEEeeEEECCCCCCHHHHHHHHH----HHHHHHHHHhCCC
Confidence 47999999999999999887653222333344444321 111233444 4455556555554
No 113
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=25.41 E-value=79 Score=27.04 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=16.3
Q ss_pred cccccEEEEecCCceeEEEEEE
Q psy15534 82 LEQGQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 82 ~E~G~fLALDLGGTNlRV~~V~ 103 (157)
.+....|+||+||+++=++.|.
T Consensus 161 ~~~~~~lVVDIGG~T~Dv~~v~ 182 (318)
T PF06406_consen 161 DEDESVLVVDIGGRTTDVAVVR 182 (318)
T ss_dssp -TTSEEEEEEE-SS-EEEEEEE
T ss_pred cccCcEEEEEcCCCeEEeeeec
Confidence 4557799999999999998874
No 114
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=25.36 E-value=3.6e+02 Score=24.76 Aligned_cols=59 Identities=17% Similarity=0.330 Sum_probs=39.4
Q ss_pred cEEEEecCCceeEEEEEEEeCCceEEE---EEEEeecCcccc-ccc-chHHHHHHHHHHHHHHHH
Q psy15534 86 QFLALDLGGTNFRVILMHLKKGLVTDE---IVKHYHIPDELR-LGS-GLKLFDFLAACISDFVHE 145 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G~~~~~~---~q~k~~iP~~l~-~gt-~eeLFdfIA~~I~~fl~~ 145 (157)
.|=|||+|-..+|...++..++ .++. ..+..++.+.+. +|. .++=.+-.-++++.|.+.
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~-~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~ 70 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAG-SIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAER 70 (496)
T ss_pred EEEEEEccccceeEEEEEecCC-ceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 3678999999999999998663 4333 334566655442 332 456667777778777764
No 115
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=25.26 E-value=63 Score=27.27 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=0.0
Q ss_pred cEEEEecCCceeEEEE
Q psy15534 86 QFLALDLGGTNFRVIL 101 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~ 101 (157)
+.++||+|.||.|+..
T Consensus 6 ~~igIDlGt~~~~i~~ 21 (334)
T PRK13927 6 NDLGIDLGTANTLVYV 21 (334)
T ss_pred ceeEEEcCcceEEEEE
No 116
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=24.76 E-value=3.4e+02 Score=25.61 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.0
Q ss_pred cccccEEEEecCCceeEEEEEEEe
Q psy15534 82 LEQGQFLALDLGGTNFRVILMHLK 105 (157)
Q Consensus 82 ~E~G~fLALDLGGTNlRV~~V~L~ 105 (157)
...+.+|+.||||..|=|-+|++.
T Consensus 169 ~~~~~vlV~DlGGGTfDvSll~~~ 192 (579)
T COG0443 169 GKEKTVLVYDLGGGTFDVSLLEIG 192 (579)
T ss_pred CCCcEEEEEEcCCCCEEEEEEEEc
Confidence 467789999999999999999998
No 117
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=24.60 E-value=1.4e+02 Score=27.29 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.0
Q ss_pred cccccEEEEecCCceeEEEEEE
Q psy15534 82 LEQGQFLALDLGGTNFRVILMH 103 (157)
Q Consensus 82 ~E~G~fLALDLGGTNlRV~~V~ 103 (157)
...|-|+.||.|+|...++.++
T Consensus 141 ~~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 141 RQEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred ccCCEEEEEEcChhheeeEEEc
Confidence 4567799999999999998875
No 118
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=24.37 E-value=83 Score=29.30 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=20.5
Q ss_pred cCccccc----ccchHHHHHHHHH--------HHHHHHHcC
Q psy15534 119 IPDELRL----GSGLKLFDFLAAC--------ISDFVHEYQ 147 (157)
Q Consensus 119 iP~~l~~----gt~eeLFdfIA~~--------I~~fl~~~~ 147 (157)
||+++|. .=.++|||-||+. |.+|+++.+
T Consensus 352 mPk~lKe~v~~~i~~~~~dkIa~E~~~~~~eel~~FL~~~~ 392 (458)
T TIGR00316 352 MPKELKERVKDAIPEDLRDKIATEEDAKTTDELRKFLKEKG 392 (458)
T ss_pred CCHHHHHHHHHhcCHHHHhhhcCccccCCHHHHHHHHHhcC
Confidence 6776663 2358999999864 788888753
No 119
>PRK10854 exopolyphosphatase; Provisional
Probab=23.85 E-value=4.5e+02 Score=24.17 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=39.4
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEE---EEEEeecCcccc-ccc-chHHHHHHHHHHHHHHHH
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDE---IVKHYHIPDELR-LGS-GLKLFDFLAACISDFVHE 145 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~---~q~k~~iP~~l~-~gt-~eeLFdfIA~~I~~fl~~ 145 (157)
|=|||+|-..+|...++..++ .+++ ..+..++.+.+- ++. +++=.+-..+++..|.+.
T Consensus 13 ~A~IDIGSNSirL~I~e~~~~-~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 13 FAAVDLGSNSFHMVIARVVDG-AMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEeccchheEEEEEecCC-cEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 788999999999999998754 4333 234456655543 232 456677777778777654
No 120
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=23.16 E-value=1.8e+02 Score=22.92 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=31.9
Q ss_pred cCHHHHHHHHHHHHHHHHhh--ccccCCCCCCCcccccc--cccc---cEEEEecCCcee
Q psy15534 45 VSGEARRSRVQRAARFILQG--TLFSLGGTNLTNLSGEV--LEQG---QFLALDLGGTNF 97 (157)
Q Consensus 45 v~~~~L~~iv~~~~~f~~em--~gL~~~~s~l~MlPT~V--~E~G---~fLALDLGGTNl 97 (157)
.+......+..+++.++..| .|..... +-|+-| .+.+ .+..||++...+
T Consensus 115 ~~~~~~~~ll~~l~~~i~~lH~~gi~H~D----l~~~NILv~~~~~~~~~~lIDld~~~~ 170 (206)
T PF06293_consen 115 LDPSQRRELLRALARLIAKLHDAGIYHGD----LNPSNILVDPDDGQYRFYLIDLDRMRF 170 (206)
T ss_pred cchhhHHHHHHHHHHHHHHHHHCcCCCCC----CCcccEEEeCCCCceeEEEEcchhcee
Confidence 66677788999999999999 7777652 344444 3333 455566655433
No 121
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification. ; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....
Probab=22.84 E-value=2.1e+02 Score=18.06 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=24.1
Q ss_pred Ccccccc------------cccccEEEEecCCce-eEEEEEEEeCCceEEE
Q psy15534 75 TNLSGEV------------LEQGQFLALDLGGTN-FRVILMHLKKGLVTDE 112 (157)
Q Consensus 75 ~MlPT~V------------~E~G~fLALDLGGTN-lRV~~V~L~G~~~~~~ 112 (157)
+|.|++- ...|..+++-..|.+ +.+-++...+++.+.+
T Consensus 6 SM~P~i~~Gd~v~v~~~~~~~~gdivv~~~~~~~~~~iKrv~~~~~~~~~~ 56 (70)
T PF00717_consen 6 SMEPTIKDGDIVLVDPSSEPKDGDIVVVKIDGDEELYIKRVVGEPGGIILI 56 (70)
T ss_dssp TTGGTSSTTEEEEEEETS---TTSEEEEEETTEESEEEEEEEEETTEEEEE
T ss_pred CcccCeeCCCEEEEEEcCCCccCeEEEEEECCceeeEEEEEEEeCCCEEEE
Confidence 5788876 457777777777777 6666666555554433
No 122
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=22.66 E-value=1.1e+02 Score=29.19 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.4
Q ss_pred ccEEEEecCCceeEEEEEEEeC
Q psy15534 85 GQFLALDLGGTNFRVILMHLKK 106 (157)
Q Consensus 85 G~fLALDLGGTNlRV~~V~L~G 106 (157)
..++.+|+||..+-|..+++.+
T Consensus 226 ~~vlV~DlGgGT~DvSv~~~~~ 247 (663)
T PTZ00400 226 KTIAVYDLGGGTFDISILEILG 247 (663)
T ss_pred cEEEEEeCCCCeEEEEEEEecC
Confidence 4599999999999999999865
No 123
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=22.14 E-value=96 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=20.5
Q ss_pred cCccccc----ccchHHHHHHHH--------HHHHHHHHcC
Q psy15534 119 IPDELRL----GSGLKLFDFLAA--------CISDFVHEYQ 147 (157)
Q Consensus 119 iP~~l~~----gt~eeLFdfIA~--------~I~~fl~~~~ 147 (157)
||+++|. .=.++|+|-||+ .|.+|+++.+
T Consensus 355 mPk~lKe~v~~~i~~~~~dkIa~E~~~~~~eel~~FL~~~~ 395 (463)
T PRK04456 355 MPKELKERVKEFIPEELRDKIATEEDVKDIEELKKFLKEKE 395 (463)
T ss_pred CCHHHHHHHHHhcCHHHHhhhcCccccCCHHHHHHHHHhcC
Confidence 6776663 235889999985 4788888753
No 124
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=21.61 E-value=1.1e+02 Score=24.46 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.0
Q ss_pred EEEEecCCceeEEEEEE
Q psy15534 87 FLALDLGGTNFRVILMH 103 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~ 103 (157)
+|+||+|=|++.+++.+
T Consensus 1 ~L~iDiGNT~ik~~~~~ 17 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFD 17 (206)
T ss_dssp EEEEEE-SSEEEEEEEE
T ss_pred CEEEEECCCeEEEEEEE
Confidence 68999999999998863
No 125
>PF07878 DUF1662: Protein of unknown function (DUF1662); InterPro: IPR012869 The proteins in this family have not been characterised, but contain a ribbon-helix-helix domain, making them a family of putative repressors.
Probab=21.61 E-value=1e+02 Score=20.46 Aligned_cols=42 Identities=10% Similarity=0.270 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcccccCHHH-HHHHHHHHHHHHHh
Q psy15534 19 TETESVRLILSAAVCQQQTALETRSSVSGEA-RRSRVQRAARFILQ 63 (157)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~le~~F~v~~~~-L~~iv~~~~~f~~e 63 (157)
++..-|-..+.--+|++|..+++.|..+.+. |+...+ .|+.+
T Consensus 4 ~~~~~Id~lr~~~~~eeL~~la~~~~r~~~~~l~~~ic---~~Li~ 46 (55)
T PF07878_consen 4 AKSARIDVLRPCRTCEELLALAEQENRTVSNPLFTWIC---DFLIN 46 (55)
T ss_pred ccchHHHHHhccCcHHHHHHHHHHHcCcccchhHHHHH---HHHHH
Confidence 3444556667778899999999999888776 666666 77765
No 126
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=21.48 E-value=1.7e+02 Score=25.86 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=29.1
Q ss_pred EEEEecCCceeEEEEEEEeCCceEEEEEEEeecCcccccccchHHHHHHHHHHHHHHH
Q psy15534 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVH 144 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~L~G~~~~~~~q~k~~iP~~l~~gt~eeLFdfIA~~I~~fl~ 144 (157)
-+|||+|||=..|+.-.... .+..+.+.++ ..-++...|++..|++-.+
T Consensus 20 ~vaiDiGGtLaKvv~sp~~s------nrl~F~t~eT---~kId~~ve~l~~li~~h~k 68 (342)
T COG5146 20 KVAIDIGGTLAKVVQSPSQS------NRLTFKTEET---KKIDQVVEWLNNLIQQHEK 68 (342)
T ss_pred EEEEecCceeeeeeeCcccc------cceeeehHhh---hhHHHHHHHHHHHHHHHHh
Confidence 68999999988886521111 1223333332 2467788888876655443
No 127
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=20.99 E-value=54 Score=24.02 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=11.8
Q ss_pred EEEEecCCceeE-EEEEEE
Q psy15534 87 FLALDLGGTNFR-VILMHL 104 (157)
Q Consensus 87 fLALDLGGTNlR-V~~V~L 104 (157)
-||+|+||..-- -..|.|
T Consensus 37 kLv~DlGG~H~~~~~sV~l 55 (90)
T TIGR02148 37 KLVVDIGGQHPAVPGAVDL 55 (90)
T ss_pred EEEEEccCcCCCcccEEEh
Confidence 589999997632 224555
No 128
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=20.79 E-value=1.3e+02 Score=25.40 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.3
Q ss_pred cEEEEecCCceeEEEEEEEeC
Q psy15534 86 QFLALDLGGTNFRVILMHLKK 106 (157)
Q Consensus 86 ~fLALDLGGTNlRV~~V~L~G 106 (157)
..+++|+||..+-++.++..|
T Consensus 151 ~~lVvDiG~gttdvs~v~~~~ 171 (333)
T TIGR00904 151 GSMVVDIGGGTTEVAVISLGG 171 (333)
T ss_pred eEEEEEcCCCeEEEEEEEeCC
Confidence 479999999999999998754
No 129
>PRK11678 putative chaperone; Provisional
Probab=20.19 E-value=74 Score=28.98 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=15.3
Q ss_pred EEEEecCCceeEEEEEE
Q psy15534 87 FLALDLGGTNFRVILMH 103 (157)
Q Consensus 87 fLALDLGGTNlRV~~V~ 103 (157)
++.||+|.||-=|+..+
T Consensus 2 ~iGID~GTtNs~va~~~ 18 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR 18 (450)
T ss_pred eEEEecCccceeeEEee
Confidence 68999999999998876
No 130
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=20.09 E-value=81 Score=29.41 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=24.4
Q ss_pred HHHHhh---ccccC--CCCCCCcccccc---------cc-------cccEEEEecCCcee
Q psy15534 59 RFILQG---TLFSL--GGTNLTNLSGEV---------LE-------QGQFLALDLGGTNF 97 (157)
Q Consensus 59 ~f~~em---~gL~~--~~s~l~MlPT~V---------~E-------~G~fLALDLGGTNl 97 (157)
-|.+++ +|+++ +-.+-+.+||+- .+ .|.++.+|+||..=
T Consensus 202 vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATT 261 (463)
T TIGR01319 202 IFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATT 261 (463)
T ss_pred HHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCcccc
Confidence 445555 55552 223447889887 22 27799999999443
Done!