RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15534
(157 letters)
>gnl|CDD|201171 pfam00349, Hexokinase_1, Hexokinase. Hexokinase (EC:2.7.1.1)
contains two structurally similar domains represented by
this family and pfam03727. Some members of the family
have two copies of each of these domains.
Length = 205
Score = 77.3 bits (191), Expect = 3e-18
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
E+G FLALDLGGTNFRV+L+ L + Y +P+EL G+G +LFDF+A C+ DF
Sbjct: 60 EKGDFLALDLGGTNFRVLLVKLTGNGKVEMTQSKYRLPEELMTGTGEQLFDFIADCLKDF 119
Query: 143 VHEYQVH--DRVIPMG 156
+ E +P+G
Sbjct: 120 MDEQFPLGKKEPLPLG 135
>gnl|CDD|215226 PLN02405, PLN02405, hexokinase.
Length = 497
Score = 58.7 bits (142), Expect = 9e-11
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 12/88 (13%)
Query: 66 LFSLGGTNLTNL--------SGEVLEQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVK 115
L S GG+ L L SG+ E+G F ALDLGGTNFRV+ + L K G V + +
Sbjct: 70 LASEGGSKLKMLISYVDNLPSGD--EKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFE 127
Query: 116 HYHIPDELRLGSGLKLFDFLAACISDFV 143
IP L GS LFDF+AA ++ FV
Sbjct: 128 EVSIPPHLMTGSSDALFDFIAAALAKFV 155
>gnl|CDD|178502 PLN02914, PLN02914, hexokinase.
Length = 490
Score = 56.8 bits (137), Expect = 4e-10
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 83 EQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E+G F ALDLGGTNFRV+ + L K V + IP EL G+ +LFDF+A+ ++
Sbjct: 93 EKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLA 152
Query: 141 DFV 143
+FV
Sbjct: 153 NFV 155
>gnl|CDD|240270 PTZ00107, PTZ00107, hexokinase; Provisional.
Length = 464
Score = 52.0 bits (125), Expect = 1e-08
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLG---------SGLKLFD 133
E+G + A+D GGTNFR + + L+ G + + +P LG + LFD
Sbjct: 72 EKGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFD 131
Query: 134 FLAACISDFVHEYQVHD---RVIPMG 156
+A I + E + + +P+G
Sbjct: 132 HIAKSIKKMMEENGDPEDLNKPVPVG 157
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 50.7 bits (121), Expect = 5e-08
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 62 LQGTLFSLGGTNLTNLSGEV------LEQGQFLALDLGGTNFRVILMHL--KKGLVTDEI 113
+ L S GG+ L L V E G + ALDLGGTNFRV+ + L ++ + +
Sbjct: 66 MHAGLASEGGSKLKMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQD 125
Query: 114 VKHYHIPDELRLGSGLKLFDFLAACISDFV 143
V+ + IP L + LFDF+A+ + FV
Sbjct: 126 VERHPIPQHLMNSTSEVLFDFIASSLKQFV 155
>gnl|CDD|227359 COG5026, COG5026, Hexokinase [Carbohydrate transport and
metabolism].
Length = 466
Score = 48.2 bits (115), Expect = 3e-07
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVK-HYHIPDELRLGSGLK-LFDFLAACIS 140
E G LA+DLGGTN RV L+ L G T +I + +P E R LF F+A ++
Sbjct: 73 ESGSVLAIDLGGTNLRVCLVVL-GGDGTFDIEQSKSFLPVECRDSESRDELFGFIADRLA 131
Query: 141 DFVHEYQVHD--RVIPMG 156
F+ E +P+G
Sbjct: 132 AFIKEQHPSGYGSKLPIG 149
>gnl|CDD|224851 COG1940, NagC, Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism].
Length = 314
Score = 34.0 bits (78), Expect = 0.021
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
E L +D+GGT +V L+ L ++ E P + + + A +++
Sbjct: 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRE---RIPTPTP---DPEEAILEAILALVAEL 57
Query: 143 VHEYQVHDRVIPMG 156
+ + Q +I +G
Sbjct: 58 LKQAQGRVAIIGIG 71
>gnl|CDD|178206 PLN02596, PLN02596, hexokinase-like.
Length = 490
Score = 33.7 bits (77), Expect = 0.033
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E+G + L+L G+NF ++ L K ++D + IP + G+ +LFD++A ++
Sbjct: 94 EKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELA 153
Query: 141 DFVHEYQVHDRVIP 154
FV E+ + P
Sbjct: 154 KFVAEHPGDEADTP 167
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 32.9 bits (75), Expect = 0.038
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 147
L +D+G T+ + + L ++ +EIV + +L + L + + Q
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVG-RPGAVTDLDELEEALRELLKEA--LRQ 57
Query: 148 VHDRVIPMG 156
+ + +G
Sbjct: 58 LKSEIDAVG 66
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 30.0 bits (68), Expect = 0.49
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHI 119
L +D+G T+ + +L G V +
Sbjct: 6 VLGIDIGTTSVKAVLFDEDGGEVVATARFENPV 38
>gnl|CDD|227216 COG4879, COG4879, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 243
Score = 28.3 bits (63), Expect = 1.5
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 1 MFDDLICDQTFLEVHQNDTETESVRLILSAAVCQQQTALETRSSVSGEARRSRVQRAARF 60
FD + + E+V++IL+ + + E V G + RV R R
Sbjct: 83 DFDKVFYIENRYL--------EAVKIILTPELKEALVKKEGE--VKGSSAEDRVARVLRL 132
Query: 61 ILQGTLFS 68
+ G +F
Sbjct: 133 VFTGVMFG 140
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 28.0 bits (63), Expect = 2.3
Identities = 20/93 (21%), Positives = 26/93 (27%), Gaps = 23/93 (24%)
Query: 64 GTLFSLGGTNLTNLSGEVLEQGQFLALDLGG---------TNFRV--ILMHLKKG----- 107
G F L N GE E L T R + K G
Sbjct: 251 GAWFLLFKAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEENKAGRGPIY 310
Query: 108 LVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
+ T+E ++ H+ EL DFL
Sbjct: 311 MDTEEALQDKHLESEL-------WEDFLDMTPG 336
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 27.5 bits (61), Expect = 3.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 109 VTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEYQ 147
+ D + HYH+P+ L + + DF+ ++ F HE +
Sbjct: 82 IPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKE 120
>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial L-rhamnulose kinases
(RhuK, also known as rhamnulokinase; EC 2.7.1.5), which
are encoded by the rhaB gene and catalyze the
ATP-dependent phosphorylation of L-rhamnulose to produce
L-rhamnulose-1-phosphate and ADP. Some uncharacterized
homologous sequences are also included in this
subfamily. The prototypical member of this subfamily is
Escherichia coli RhuK, which exists as a monomer
composed of two large domains. The ATP binding site is
located in the cleft between the two domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of divalent Mg2+ or Mn2+
is required for catalysis. Although an intramolecular
disulfide bridge is present in Rhuk, disulfide formation
is not important to the regulation of RhuK enzymatic
activity. Members of this subfamily belong to the FGGY
family of carbohydrate kinases.
Length = 440
Score = 27.1 bits (61), Expect = 4.6
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 87 FLALDLGGTNFRVILMHLKKG-LVTDEI 113
LA+DLG ++ RVIL L G L +E+
Sbjct: 2 VLAVDLGASSGRVILGSLDGGKLTLEEV 29
>gnl|CDD|221314 pfam11920, DUF3438, Protein of unknown function (DUF3438). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 276 to 307 amino acids in
length.
Length = 285
Score = 26.9 bits (60), Expect = 5.0
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 17 NDTETESVRLILSAAVCQQQTALETRSSVSGEARRSRVQRAA 58
E VR++ V T+ + SS + R +R
Sbjct: 106 GQKPLEPVRIVYGDKVPTASTSDDAASSAPEQEARKTPRRET 147
>gnl|CDD|182034 PRK09698, PRK09698, D-allose kinase; Provisional.
Length = 302
Score = 26.9 bits (60), Expect = 5.3
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146
L +D+GGT+ R LV I + + + L + + + + EY
Sbjct: 6 VLGIDMGGTHIRF-------CLVDA----EGEILHCEKKRTAEVIAPDLVSGLGEMIDEY 54
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase.
Length = 502
Score = 26.0 bits (57), Expect = 10.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 117 YHIPDELRLGSGLKLFDFLAA 137
+ I D L+LG L LFDF AA
Sbjct: 197 FPIKDHLQLGKELDLFDFDAA 217
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.395
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,956,628
Number of extensions: 727452
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 25
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.9 bits)