RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15534
(157 letters)
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
mutation, glycolysis, nucleotide-binding, transfera;
HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
1v4t_A*
Length = 470
Score = 74.0 bits (181), Expect = 2e-16
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIV----KHYHIPDELRLGSGLKLFDFLAAC 138
E G FL+LDLGGTNFRV+L+ + +G V + Y IP++ G+ LFD+++ C
Sbjct: 75 EVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISEC 134
Query: 139 ISDFVHEYQVHDRVIPMG 156
ISDF+ ++Q+ + +P+G
Sbjct: 135 ISDFLDKHQMKHKKLPLG 152
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 72.1 bits (176), Expect = 1e-15
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKG--LVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E G FLALDLGGTNFRV+L+ ++ G + K Y IP E+ G+G +LFD + +CIS
Sbjct: 524 ENGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCIS 583
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + +P+G
Sbjct: 584 DFLDYMGIKGPRMPLG 599
Score = 70.2 bits (171), Expect = 5e-15
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHL--KKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACIS 140
E+G F+ALDLGG++FR++ + + +K + Y P+ + GSG +LFD +A C+
Sbjct: 76 EKGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLG 135
Query: 141 DFVHEYQVHDRVIPMG 156
DF+ + ++ D+ +P+G
Sbjct: 136 DFMEKRKIKDKKLPVG 151
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase,
structural genomics consortium, SGC, A enzyme,
ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo
sapiens}
Length = 445
Score = 71.2 bits (174), Expect = 2e-15
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 76 NLSGEVLEQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFL 135
+ + E+G FLALDLGGTNFRV+L+ + G+ + Y IP+ + GSG +LFD +
Sbjct: 50 RATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITS--EIYSIPETVAQGSGQQLFDHI 107
Query: 136 AACISDFVHEYQVHDRVIPMG 156
CI DF + + + +P+G
Sbjct: 108 VDCIVDFQQKQGLSGQSLPLG 128
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 70.8 bits (173), Expect = 3e-15
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 83 EQGQFLALDLGGTNFRVILMHLK-KGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISD 141
E G FLALDLGGTN+RV+ + L+ KG + Y IP E GSG +LF ++A ++D
Sbjct: 66 ETGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLAD 125
Query: 142 FVHEYQVHDRVIPMG 156
F+ + D+ +G
Sbjct: 126 FLENNGMKDKKFDLG 140
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 70.5 bits (172), Expect = 4e-15
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
+ G FLA+ +GG + VIL+ L + L+ A + F
Sbjct: 59 QAGSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAF 118
Query: 143 VH-EYQVHDRVIPMG 156
E+ +P+G
Sbjct: 119 SSXEFSSXAGSVPLG 133
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression
binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A
{Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A*
3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Length = 485
Score = 65.1 bits (158), Expect = 3e-13
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
E G FLALDLGGTN RV+L+ L D Y +PD LR G+ +L+ F+A C+ +F
Sbjct: 78 ETGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEF 137
Query: 143 VHEY--QVHDRVIPMG 156
V E+ +P+G
Sbjct: 138 VDEWYPDGVSEPLPLG 153
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA
binding P helix-turn-helix, phosphotransferase system;
2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10
c.55.1.10 PDB: 3bp8_A
Length = 406
Score = 33.4 bits (77), Expect = 0.024
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
E +L+L + + L L ++V L L L L D + + I F
Sbjct: 83 EAWHYLSLRISRGEIFLALRDLSS-----KLVVEESQE--LALKDDLPLLDRIISHIDQF 135
Query: 143 VHEYQV-HDRVIPMG 156
+Q +R+ +
Sbjct: 136 FIRHQKKLERLTSIA 150
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein
structure initiative, midwest center for structural
genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP:
a.4.5.63 c.55.1.10 c.55.1.10
Length = 429
Score = 32.3 bits (74), Expect = 0.050
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
QFL++ LG + L L E++ I + + L I +F
Sbjct: 106 LGWQFLSMRLGRGYLTIALHELGG-----EVLIDTKID--IHEIDQDDVLARLLFEIEEF 158
Query: 143 VHEYQVH-DRVIPMG 156
Y DRV +
Sbjct: 159 FQTYAAQLDRVTSIA 173
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase;
HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Length = 373
Score = 30.4 bits (68), Expect = 0.22
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
D+GGT+ R+ + K V Y + ++ +F I
Sbjct: 31 TFVGDVGGTSARMGFVREGKNDSVHACVTRYSMKR----KDITEIIEFFNEIIELM 82
>3mcp_A Glucokinase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
transferase; 3.00A {Parabacteroides distasonis}
Length = 366
Score = 29.3 bits (66), Expect = 0.53
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 9/37 (24%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIPDE 122
+ LD GGTNF + EI +P
Sbjct: 12 MTLDAGGTNFVF-------SAIQGGKEIADPVVLPAC 41
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 28.8 bits (65), Expect = 0.58
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
+ + +D+GGT + ++ LKKG + E + +P + + +A +++
Sbjct: 10 KNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFR---VPTPQPAT-PESVAEAVALVVAEL 65
Query: 143 VHEYQVHDRVIPMG 156
+ P+G
Sbjct: 66 SARPEAPAAGSPVG 79
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 29.2 bits (66), Expect = 0.60
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 87 FLALDLGGTNFRVILMHLKKGLV 109
+A+DLG ++ RV+L ++
Sbjct: 6 CVAVDLGASSGRVMLARYERECR 28
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.62
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 93 GGTNFRVILMHLKKGLVTDEI---------VKHYHIPDELRLGSGLKLFDFLAACISDFV 143
T + L H L DE+ + +P E+ + +L +A I D +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGL 341
Query: 144 HEYQ 147
+
Sbjct: 342 ATWD 345
Score = 27.9 bits (61), Expect = 1.7
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 2 FDDLICD-QTFLEVHQNDTETESVRLILSAAVCQQQTALETRSS-VSGEARRSRVQR 56
++ L+ FL + + LI S + AL + EA + +VQR
Sbjct: 541 YERLVNAILDFLPKIEEN-------LICSKYTDLLRIALMAEDEAIFEEAHK-QVQR 589
Score = 26.0 bits (56), Expect = 6.7
Identities = 7/67 (10%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 86 QFLALDLGGTNFRVILMHL---KKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDF 142
++ ++ + + + K + +E H I D + D + + +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 143 VHEYQVH 149
+ + H
Sbjct: 473 FYSHIGH 479
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 29.0 bits (65), Expect = 0.63
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIP 120
+ +DLG T +V L L ++ ++ +
Sbjct: 8 TIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLE 41
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding,
transferase; HET: MSE BGC; 2.20A {Escherichia coli}
SCOP: c.55.1.7 PDB: 1q18_A*
Length = 332
Score = 29.0 bits (64), Expect = 0.66
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146
L D+GGTN R+ L + G ++ K Y D + L A I ++ E+
Sbjct: 16 ALVGDVGGTNARLALCDIASGEISQ--AKTYSGLD----------YPSLEAVIRVYLEEH 63
Query: 147 QVH 149
+V
Sbjct: 64 KVE 66
>2yhw_A Bifunctional UDP-N-acetylglucosamine
2-epimerase/N-acetylmannosamine kinase; transferase,
sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A
{Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Length = 343
Score = 28.9 bits (65), Expect = 0.67
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 145
LA+DLGGTN RV +V+ EIVK Y + + + + + E
Sbjct: 33 LAVDLGGTNLRV-------AIVSMKGEIVKKYTQFNPKTYEERI---NLILQMCVEAAAE 82
Query: 146 YQV-HDRVIPMG 156
+ R++ +G
Sbjct: 83 AVKLNCRILGVG 94
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix,
structural PSI-2, protein structure initiative; HET:
MSE; 2.02A {Enterococcus faecalis}
Length = 326
Score = 28.8 bits (65), Expect = 0.80
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIPDELRLGSGLKLFDFLAACISDFVH 144
+ +DLGGT + ++T + + + I + G + + I +
Sbjct: 8 IIGIDLGGTTIKF-------AILTTDGVVQQKWSIETNILED-GKHIVPSIIESIRHRID 59
Query: 145 EYQV-HDRVIPMG 156
Y + + + +G
Sbjct: 60 LYNMKKEDFVGIG 72
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A
{Thermus thermophilus}
Length = 302
Score = 28.3 bits (64), Expect = 1.0
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTD-EIVKHYHIPDELRLGSGLKLFDFLAACISDFVHEY 146
+ LDLGGT G+ ++ +P G ++ + LA E
Sbjct: 4 VGLDLGGTKIAA-------GVFDGKRLLSKVVVPTPKE--GGERVAEALAEAAERAEREA 54
Query: 147 QVHDRVIPMG 156
V I +G
Sbjct: 55 GVRGEAIGLG 64
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 27.6 bits (61), Expect = 1.0
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 103 HLKKGLVTDEIVKHYHI---PDELRLGSGLKLFDFLAACISDFVHEYQVH 149
KG +++V+H+ I P +++ F +S V ++ +
Sbjct: 70 QPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYF--GSLSALVSQHSIS 117
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural
GENO protein structure initiative, midwest center for
structural genomics; HET: MLY MSE MLZ ADP; 1.66A
{Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Length = 302
Score = 28.0 bits (62), Expect = 1.2
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 9/39 (23%)
Query: 84 QGQFLALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIP 120
++ GGT F + + I+ P
Sbjct: 2 NAMLGGIEAGGTXFVC-------AVGREDGTIIDRIEFP 33
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.65A {Cytophaga hutchinsonii}
Length = 321
Score = 27.9 bits (63), Expect = 1.5
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 83 EQGQFLALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIPDELRLGSGLKLFDFLAACIS 140
QG L +D+GGT+ +K GLVT EI + G+ + + I
Sbjct: 17 FQGMILGIDVGGTS-------VKFGLVTPEGEIQNATRFMTADWVN-GIGFVESMKLEIG 68
Query: 141 DFVHEYQV 148
+F+ +Y +
Sbjct: 69 NFLKQYPI 76
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Length = 330
Score = 27.1 bits (59), Expect = 2.8
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 87 FLALDLGGTNFRVILMHLKKGLVTDEIVKHYHIPD 121
+ A+D G ++FR+ ++ + G V E +
Sbjct: 9 YAAVDWGTSSFRLWIIG-EDGAVLAERRSAEGMTT 42
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein structure
initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10
c.55.1.10
Length = 289
Score = 26.8 bits (60), Expect = 3.0
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIPDELRLGSGLKLFDFLAACISDFVHE 145
LA+D+GGT L L+ +I +P + L +S V
Sbjct: 4 LAIDIGGTK-------LAAALIGADGQIRDRRELPTPASQTP-----EALRDALSALVSP 51
Query: 146 YQVHDRVIPMG 156
Q H + + +
Sbjct: 52 LQAHAQRVAIA 62
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 26.5 bits (58), Expect = 3.3
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 58 ARFILQGTLFSLGGTNLTNLSGEVLEQGQFLALDL 92
+ + G +++ G NL+N E
Sbjct: 47 GKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMW 81
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A
{Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Length = 321
Score = 26.4 bits (59), Expect = 4.2
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 88 LALDLGGTNFRVILMHLKKGLVTD--EIVKHYHIP 120
+ +D+GGT G+V + I+ + +
Sbjct: 5 IGVDIGGTKIAA-------GVVDEEGRILSTFKVA 32
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 25.6 bits (56), Expect = 6.8
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 108 LVTDEIVKHYHIPDELRL-GSGLKLFDFLAACISDFVHEYQVH 149
+ +KH + E + G FD + D + Y+ H
Sbjct: 162 FRAEGKIKHCRVQQEGQTVMLGNSEFD----SLVDLISYYEKH 200
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne
transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP:
b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A
1tfp_A
Length = 127
Score = 24.9 bits (54), Expect = 8.3
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 109 VTDEIVKHYHIP 120
D + Y I
Sbjct: 97 ANDSGPRRYTIA 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 8.7
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 97 FRVILMHLKKGLVTD-------EIVKHY--HIPDELRLGSGLKLFDFLAACISDFVHEY- 146
F IL +G D E+V + ++ + + L C+++F + Y
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 147 ---QVHDRV 152
+H
Sbjct: 97 EGNDIHALA 105
>1vhx_A Putative holliday junction resolvase; structural genomics,
hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Length = 150
Score = 24.9 bits (55), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 43 SSVSGEARRSRV-QRAARFILQGTL 66
+ VS + R+ + + AA ILQG L
Sbjct: 112 ADVSRQKRKKVIDKMAAVMILQGYL 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.395
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,391,755
Number of extensions: 136840
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 46
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)